Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 113 of 313
Found at i:36811469 original size:29 final size:29
Alignment explanation
Indices: 36811434--36811507 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
36811424 ACACGAATTA
36811434 TCAATGAACAAGTTCTTCATCGCGAACT-C
1 TCAATGAACAAGTTCTTCATCGCGAA-TAC
*
36811463 TCAATGAACAAGGTCTTCATCGCGAATAC
1 TCAATGAACAAGTTCTTCATCGCGAATAC
**
36811492 TCAACAAACAAGTTCT
1 TCAATGAACAAGTTCT
36811508 CCACCTCTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (29 bp):
TCAATGAACAAGTTCTTCATCGCGAATAC
Found at i:36816007 original size:26 final size:26
Alignment explanation
Indices: 36815967--36816016 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
36815957 TGCAGATGCT
*
36815967 ACCAGTTGGGTGATACAAGGTAGAAA
1 ACCAGTTGGGCGATACAAGGTAGAAA
36815993 ACCAGTTGGGCGATACAAGGTAGA
1 ACCAGTTGGGCGATACAAGGTAGA
36816017 GAGTCATCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.14, G:0.32, T:0.18
Consensus pattern (26 bp):
ACCAGTTGGGCGATACAAGGTAGAAA
Found at i:36817876 original size:10 final size:10
Alignment explanation
Indices: 36817851--36817891 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
36817841 TAGGAAGATA
36817851 TTATTTTT-T
1 TTATTTTTAT
*
36817860 TTGTTTTTAT
1 TTATTTTTAT
36817870 TTATTTTTAT
1 TTATTTTTAT
36817880 TT-TATTTTAT
1 TTAT-TTTTAT
36817890 TT
1 TT
36817892 TTTAAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 8 0.29
10 20 0.71
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (10 bp):
TTATTTTTAT
Found at i:36818151 original size:45 final size:45
Alignment explanation
Indices: 36818098--36818351 Score: 244
Period size: 45 Copynumber: 5.7 Consensus size: 45
36818088 AAGTAGCATG
*
36818098 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* * * * *
36818143 TCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATAACATA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* * * * **
36818188 TCCTATCTCTCTGAAGTTACAGCGGAATAGA-TCGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-GAAGATAGCAAA
* * ** ** *
36818233 CCTTATCTCTCTGAAGTTGCAGTAAAGCAGGTTGAAG-TAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
* * * * *
36818277 TCTTATCTCCCTAAAGTTGCAATGGAGTAGACTAAAGACCA-CAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGA-TAGCAAA
*
36818322 CCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAG
36818352 GTTGAAATTA
Statistics
Matches: 164, Mismatches: 41, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
44 34 0.21
45 128 0.78
46 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAA
Found at i:36818329 original size:89 final size:89
Alignment explanation
Indices: 36818059--36818384 Score: 316
Period size: 89 Copynumber: 3.6 Consensus size: 89
36818049 CTGAAGACAG
* * * *
36818059 TCTCTCTGAAGTTGTAGTAAAGCAGGTTAAAGTAGCATGTCTTATCTCCCTGAAGTTGCAGTGGA
1 TCTCCCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGA
* * *
36818124 GCAGACTGAAGATAGCAGATCTTA
66 GTAGACTGAAGATAGCAAACCTTA
* ** ** * * * * *
36818148 TCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATAACATA-TCCTATCTCTCTGAAGTTACAGCG
1 TCTCCCTGAAGTTGCAGTAAAGCAGGTTGAAG-TAGCA-AGTCTTATCTCCCTGAAGTTGCAGTG
*
36818212 GAATAGA-TCGAAGATAGCAAACCTTA
64 GAGTAGACT-GAAGATAGCAAACCTTA
* * *
36818238 TCTCTCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTAAAGTTGCAATGGA
1 TCTCCCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGA
* *
36818303 GTAGACTAAAGACCA-CAAACCTTA
66 GTAGACTGAAGA-TAGCAAACCTTA
** * * * * *
36818327 TCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAACTCTTACCTCCTTGAAGTT
1 TCTCCCTGAAGTTGCAGTAAAGCAGGTTG-AAGTAGCAAGTCTTATCTCCCTGAAGTT
36818385 CCAGCGAAGT
Statistics
Matches: 189, Mismatches: 41, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
88 1 0.01
89 94 0.50
90 94 0.50
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (89 bp):
TCTCCCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGA
GTAGACTGAAGATAGCAAACCTTA
Found at i:36818384 original size:179 final size:175
Alignment explanation
Indices: 36818059--36818595 Score: 505
Period size: 179 Copynumber: 3.0 Consensus size: 175
36818049 CTGAAGACAG
* * * *
36818059 TCTCTCTGAAGTTGTAGTAAAGCAGGTTAAAGTAGCATGTCTTATCTCCCTGAAGTTGCAGTGGA
1 TCTCTCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTAAAGTTGCAGTGGA
* * * * * * *
36818124 GCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGA-TAACATA
66 GCAGACTAAAGACA-CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA-ATTACCA-A
*
36818188 TCCTATCT-CTCTGAAGTTACAGCGGAATAGATCGAAGATAGCAAACCT-T
128 TCTTATCTCCT-TGAAGTTACAGC-GAATAGATCGAAGATA-CAAACCTCT
*
36818237 ATCTCTCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTAAAGTTGCAATGG
1 -TCTCTCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTAAAGTTGCAGTGG
* *
36818302 AGTAGACTAAAGACCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAAC
65 AGCAGACTAAAGA-CACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAATTACCAA-
* * * * * *
36818367 TCTTACCTCCTTGAAGTTCCAGCGAAGTATATCAAAGCTACAAATCTCT
128 TCTTATCTCCTTGAAGTTACAGCGAA-TAGATCGAAGATACAAACCTCT
* * * * * * * * * *
36818416 TCTAC-CTGAAATTACATTAGAGCAGATCGAA--ACCACAATCCTTATCTCTCTAAAGTTGTAGT
1 TCT-CTCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCA-AGT-CTTATCTCCCTAAAGTTGCAGT
* * *
36818478 AGAGCAGGA-TAAAAATACACAAACCTTAT-TCCCCTAAAGTTGCAGTGGAGCAGATTGAAATTA
63 GGAGCA-GACT--AAAGACACAAACCTTATCT-CCCTGAAGTTGCAGTGGAGCAGATTGAAATTA
* * * *
36818541 CCAATTCTTATCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTACAAATCTCT
124 CCAA-TCTTATCTCCTTGAAGTTACAGC-GAATAGATCGAAGATACAAACCTCT
36818595 T
1 T
36818596 TTCCCTAAAA
Statistics
Matches: 301, Mismatches: 43, Indels: 28
0.81 0.12 0.08
Matches are distributed among these distances:
176 3 0.01
177 2 0.01
178 59 0.20
179 228 0.76
180 9 0.03
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (175 bp):
TCTCTCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTAAAGTTGCAGTGGA
GCAGACTAAAGACACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAATTACCAATCT
TATCTCCTTGAAGTTACAGCGAATAGATCGAAGATACAAACCTCT
Found at i:36818410 original size:89 final size:87
Alignment explanation
Indices: 36818144--36818589 Score: 244
Period size: 89 Copynumber: 5.0 Consensus size: 87
36818134 GATAGCAGAT
* ** *
36818144 CTTATCTCCCTGAAGTTGTAGTGGAGCAAATTGAAGATAACATATCCTATCT-CTCTGAAGTTAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAA-ATAACA-ATCTTATCTCCT-TGAAGTTAC
* *
36818208 AGCGGAA-TAGATCGAAGATAGCAAAC
63 AGC-GAAGTAGATCAAAGCTA-CAAAC
* ** * * * * * *
36818234 CTTATCTCTCTGAAGTTGCAGTAAAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTAAAGTTGCAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATAACAA-TCTTATCTCCTTGAAGTTACAG
* * *
36818299 TGGAGTAGA-CTAAAGACCACAAAC
65 CGAAGTAGATC-AAAG-CTACAAAC
* * *
36818323 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAACTCTTACCTCCTTGAAGTTCCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAA-TAACAA-TCTTATCTCCTTGAAGTTACA
* *
36818388 GCGAAGTATATCAAAGCTACAAAT
64 GCGAAGTAGATCAAAGCTACAAAC
* * * * * * * ** * **
36818412 CTCT-TCTACCTGAAATTACATTAGAGCAGATCGAAACCACAATCCTTATCT-CTCTAAAGTTGT
1 CT-TATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATAACAAT-CTTATCTCCT-TGAAGTTAC
* * **
36818475 AG-TAGAGCAGGAT-AAAAATACACAAAC
63 AGCGA-AGTA-GATCAAAGCT--ACAAAC
* * * *
36818502 CTTAT-TCCCCTAAAGTTGCAGTGGAGCAGATTGAAATTACCAATTCTTATCTCCTTGAAGTTTC
1 CTTATCT-CCCTGAAGTTGCAGTGGAGCAGGTTGAAA-TAACAA-TCTTATCTCCTTGAAGTTAC
*
36818566 AGC-AGAGTAGATCGAAGCTACAAA
63 AGCGA-AGTAGATCAAAGCTACAAA
36818590 TCTCTTTTCC
Statistics
Matches: 264, Mismatches: 71, Indels: 43
0.70 0.19 0.11
Matches are distributed among these distances:
87 4 0.02
88 28 0.11
89 105 0.40
90 97 0.37
91 27 0.10
92 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (87 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAATAACAATCTTATCTCCTTGAAGTTACAGC
GAAGTAGATCAAAGCTACAAAC
Found at i:36819001 original size:14 final size:14
Alignment explanation
Indices: 36818979--36819012 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
36818969 AATAGGAAAA
*
36818979 TATTATTTTATTTT
1 TATTTTTTTATTTT
*
36818993 TATTTTTTTGTTTT
1 TATTTTTTTATTTT
36819007 TATTTT
1 TATTTT
36819013 ATTAAATTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (14 bp):
TATTTTTTTATTTT
Found at i:36819145 original size:20 final size:20
Alignment explanation
Indices: 36819117--36819156 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36819107 TCAATTTGGA
36819117 ATTGAATTATTCTCTCTTTT
1 ATTGAATTATTCTCTCTTTT
*
36819137 ATTGGATTATTCTCTCTTTT
1 ATTGAATTATTCTCTCTTTT
36819157 CCTATTTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.15, G:0.07, T:0.60
Consensus pattern (20 bp):
ATTGAATTATTCTCTCTTTT
Found at i:36822809 original size:46 final size:46
Alignment explanation
Indices: 36822757--36822889 Score: 185
Period size: 46 Copynumber: 2.9 Consensus size: 46
36822747 TTCTGAAATG
* *
36822757 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGATATA
1 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGACAGA
* *
36822803 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACAGA
1 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGACAGA
* * * * *
36822849 AAATGAGTAAGACCATAGTCGAAAGACACTATGGCATCATG
1 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATG
36822890 TCAAAGATAA
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.20
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGACAGA
Found at i:36823191 original size:16 final size:17
Alignment explanation
Indices: 36823170--36823202 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36823160 ATGATAGAGC
36823170 ATGAAAT-ATTAATATA
1 ATGAAATGATTAATATA
*
36823186 ATGAAATGATTGATATA
1 ATGAAATGATTAATATA
36823203 TACTTATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTAATATA
Found at i:36824389 original size:7 final size:7
Alignment explanation
Indices: 36824352--36824390 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
36824342 TAACATTCGC
*
36824352 ATCATTC
1 ATCATTT
*
36824359 ATCATTC
1 ATCATTT
36824366 ATCATTT
1 ATCATTT
36824373 ATCATTT
1 ATCATTT
*
36824380 ATCATCT
1 ATCATTT
36824387 ATCA
1 ATCA
36824391 CGCATTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (7 bp):
ATCATTT
Found at i:36833535 original size:21 final size:21
Alignment explanation
Indices: 36833509--36833549 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36833499 AGACGAGCAA
* *
36833509 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
36833530 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
36833550 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:36857570 original size:2 final size:2
Alignment explanation
Indices: 36857563--36857593 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
36857553 GAACAAGTTT
36857563 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
36857594 TCATGCATGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:36859227 original size:7 final size:8
Alignment explanation
Indices: 36859215--36859248 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
36859205 ATAATAAAAT
36859215 ATAT-AAA
1 ATATCAAA
36859222 ATAT-AAA
1 ATATCAAA
36859229 ATATCAAA
1 ATATCAAA
36859237 ATATCAAA
1 ATATCAAA
36859245 ATAT
1 ATAT
36859249 TAGAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (8 bp):
ATATCAAA
Found at i:36859231 original size:24 final size:24
Alignment explanation
Indices: 36859204--36859259 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
36859194 TAATGATGTG
*
36859204 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
*
36859228 AAT-ATCAAAATATCAAAATATTAG
1 AATAAT-AAAATATCAAAATATTAA
36859252 AATAATAA
1 AATAATAA
36859260 TAATTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 8 0.30
24 17 0.63
25 2 0.07
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:36859255 original size:16 final size:15
Alignment explanation
Indices: 36859208--36859255 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
36859198 GATGTGAATA
36859208 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
*
36859224 ATAAAATATCAAAAT
1 ATAAAATATTAAAAT
*
36859239 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
36859255 A
1 A
36859256 ATAATAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:36859314 original size:18 final size:18
Alignment explanation
Indices: 36859272--36859314 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
36859262 ATTAATATTG
36859272 ACAAATAAAAAATAAAAT
1 ACAAATAAAAAATAAAAT
* *
36859290 AGAAATAAAAAA-AAAGT
1 ACAAATAAAAAATAAAAT
36859307 ACATAATA
1 ACA-AATA
36859315 TATATATTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (18 bp):
ACAAATAAAAAATAAAAT
Found at i:36859473 original size:22 final size:24
Alignment explanation
Indices: 36859410--36859474 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
36859400 CGTGATAATA
*
36859410 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
36859435 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
36859458 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
36859475 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:36859624 original size:23 final size:24
Alignment explanation
Indices: 36859499--36859626 Score: 79
Period size: 23 Copynumber: 5.5 Consensus size: 24
36859489 AAAAATATAT
* *
36859499 ATATAAATAATATAATATTAAAGAT
1 ATATACATAATATAATATT-AAGAA
* * * *
36859524 ATATACATAAAATAGTA-TAATAT
1 ATATACATAATATAATATTAAGAA
** *
36859547 ATATATGTAATATAGA-ATTTA-AA
1 ATATACATAATATA-ATATTAAGAA
* * *
36859570 ATATACCTAATATATTA-AAAG-A
1 ATATACATAATATAATATTAAGAA
*
36859592 ATATATATAATATAATATTAAGAA
1 ATATACATAATATAATATTAAGAA
36859616 ATATA-ATAATA
1 ATATACATAATA
36859627 ACAAAAAAGG
Statistics
Matches: 78, Mismatches: 19, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
22 16 0.21
23 39 0.50
24 9 0.12
25 14 0.18
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATACATAATATAATATTAAGAA
Found at i:36860144 original size:30 final size:30
Alignment explanation
Indices: 36860108--36860182 Score: 123
Period size: 30 Copynumber: 2.5 Consensus size: 30
36860098 TAGGTACAAG
* *
36860108 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
36860138 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
36860168 TGGTGGTGGAAAAGG
1 TGGTGGTGGAAAAGG
36860183 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.23, C:0.03, G:0.51, T:0.24
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:36861690 original size:9 final size:9
Alignment explanation
Indices: 36861678--36861708 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
36861668 AAAAAAATAA
36861678 AAAAGTTAT
1 AAAAGTTAT
36861687 AAAAGTTAT
1 AAAAGTTAT
36861696 AAAAGTTAT
1 AAAAGTTAT
36861705 AAAA
1 AAAA
36861709 AATATTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (9 bp):
AAAAGTTAT
Found at i:36861699 original size:20 final size:19
Alignment explanation
Indices: 36861669--36861724 Score: 71
Period size: 18 Copynumber: 3.0 Consensus size: 19
36861659 ATAAAAGATA
36861669 AAAAAATA-AAAAAGTTAT
1 AAAAAATATAAAAAGTTAT
**
36861687 AAAAGTTAT-AAAAGTTAT
1 AAAAAATATAAAAAGTTAT
36861705 AAAAAATATTAAAAAGTTAT
1 AAAAAATA-TAAAAAGTTAT
36861725 TGTTTATAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 21 0.68
19 1 0.03
20 9 0.29
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (19 bp):
AAAAAATATAAAAAGTTAT
Found at i:36861798 original size:21 final size:21
Alignment explanation
Indices: 36861772--36861852 Score: 92
Period size: 22 Copynumber: 3.7 Consensus size: 21
36861762 TAAAAATTGC
36861772 AAAAATTATAAAATATCCT-AA
1 AAAAATTATAAAA-ATCCTAAA
**
36861793 AAAAATTATAAAAATTTGTAAA
1 AAAAATTATAAAAA-TCCTAAA
36861815 AGAAAATTATAAAAATCCTGAAA
1 A-AAAATTATAAAAATCCT-AAA
*
36861838 AAAATTTATAAAAAT
1 AAAAATTATAAAAAT
36861853 TATTATATCC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
20 1 0.02
21 15 0.29
22 18 0.35
23 17 0.33
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAAATTATAAAAATCCTAAA
Found at i:36861806 original size:22 final size:22
Alignment explanation
Indices: 36861772--36861850 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 22
36861762 TAAAAATTGC
36861772 AAAAATTATAAAATATCCT-AA
1 AAAAATTATAAAATATCCTAAA
**
36861793 AAAAATTATAAAA-ATTTGTAAA
1 AAAAATTATAAAATA-TCCTAAA
36861815 AGAAAATTATAAAA-ATCCTGAAA
1 A-AAAATTATAAAATATCCT-AAA
*
36861838 AAAATTTATAAAA
1 AAAAATTATAAAA
36861851 ATTATTATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
20 1 0.02
21 15 0.31
22 16 0.33
23 17 0.35
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (22 bp):
AAAAATTATAAAATATCCTAAA
Found at i:36861851 original size:22 final size:21
Alignment explanation
Indices: 36861772--36861852 Score: 94
Period size: 21 Copynumber: 3.7 Consensus size: 21
36861762 TAAAAATTGC
36861772 AAAAATTATAAAATATCCT-AA
1 AAAAATTATAAAA-ATCCTGAA
*
36861793 AAAAATTATAAAAAT-TTGTAAA
1 AAAAATTATAAAAATCCTG--AA
36861815 AGAAAATTATAAAAATCCTGAA
1 A-AAAATTATAAAAATCCTGAA
36861837 AAAAATTTATAAAAAT
1 AAAAA-TTATAAAAAT
36861853 TATTATATCC
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.02
20 2 0.04
21 17 0.33
22 16 0.31
23 14 0.27
24 2 0.04
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAAATTATAAAAATCCTGAA
Found at i:36866312 original size:31 final size:31
Alignment explanation
Indices: 36866274--36866332 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
36866264 TCCTCTACTT
* *
36866274 GATTTTAT-AATATTTATAATATTTTTTTTAC
1 GATTTTATAAAAAATTATAAT-TTTTTTTTAC
36866305 GATTTTATAAAAAATTATAATTTTTTTT
1 GATTTTATAAAAAATTATAATTTTTTTT
36866333 CTTTATTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 15 0.60
32 10 0.40
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (31 bp):
GATTTTATAAAAAATTATAATTTTTTTTTAC
Found at i:36866368 original size:18 final size:18
Alignment explanation
Indices: 36866347--36866387 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
36866337 ATTTCTATTT
* * *
36866347 ATTTTGTAATTTTTTATG
1 ATTTTATAATATTTTACG
36866365 ATTTTATAATATTTTACG
1 ATTTTATAATATTTTACG
36866383 ATTTT
1 ATTTT
36866388 TTAAATAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (18 bp):
ATTTTATAATATTTTACG
Found at i:36868019 original size:9 final size:9
Alignment explanation
Indices: 36868005--36868036 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
36867995 AACTTGGTGC
36868005 ATTTTGTTT
1 ATTTTGTTT
36868014 ATTTTGTTT
1 ATTTTGTTT
36868023 ATTTTGTTT
1 ATTTTGTTT
36868032 ATTTT
1 ATTTT
36868037 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:36868147 original size:23 final size:23
Alignment explanation
Indices: 36868114--36868162 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
36868104 ATTGAAACAA
*
36868114 CATAATGATAGCTAATATGCTTT
1 CATAATAATAGCTAATATGCTTT
36868137 CATAATAATAGCTAATATGCTTT
1 CATAATAATAGCTAATATGCTTT
36868160 CAT
1 CAT
36868163 CTTTTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (23 bp):
CATAATAATAGCTAATATGCTTT
Found at i:36875713 original size:3 final size:3
Alignment explanation
Indices: 36875700--36875732 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
36875690 AATCAGATAC
*
36875700 ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
36875733 CCTGGTAGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:36879267 original size:18 final size:19
Alignment explanation
Indices: 36879244--36879281 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
36879234 GGAAGCAAGC
*
36879244 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
36879262 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
36879281 A
1 A
36879282 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:36886974 original size:16 final size:17
Alignment explanation
Indices: 36886953--36886985 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
36886943 AGAAAACTCT
36886953 AATCAAAT-CAACCCAC
1 AATCAAATCCAACCCAC
36886969 AATCAAATCCAACCCAC
1 AATCAAATCCAACCCAC
36886986 TCATCTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.12
Consensus pattern (17 bp):
AATCAAATCCAACCCAC
Found at i:36892968 original size:17 final size:17
Alignment explanation
Indices: 36892946--36892979 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
36892936 AGATCTAGTG
36892946 GATAATGATGACGAATA
1 GATAATGATGACGAATA
36892963 GATAATGATGACGAATA
1 GATAATGATGACGAATA
36892980 AAATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.24, T:0.24
Consensus pattern (17 bp):
GATAATGATGACGAATA
Found at i:36893496 original size:54 final size:54
Alignment explanation
Indices: 36893414--36893684 Score: 542
Period size: 54 Copynumber: 5.0 Consensus size: 54
36893404 AGATAATGTG
36893414 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
1 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
36893468 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
1 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
36893522 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
1 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
36893576 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
1 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
36893630 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
1 ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
36893684 A
1 A
36893685 CTTTGATTAT
Statistics
Matches: 217, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 217 1.00
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (54 bp):
ATTAACTAAGGCTTTAAGGTAAGATCTTCATGCTTTAGTGATAGTTGCATGTTT
Found at i:36913325 original size:4 final size:4
Alignment explanation
Indices: 36913285--36913309 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
36913275 CGTCCCCACA
36913285 TAAT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAAT TAAT TAAT TAAT TAAT T
36913310 TACTCATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TAAT
Found at i:36915846 original size:17 final size:17
Alignment explanation
Indices: 36915756--36915849 Score: 58
Period size: 17 Copynumber: 5.6 Consensus size: 17
36915746 TTTAGGTTGG
36915756 TTTATATTATTTTAATA
1 TTTATATTATTTTAATA
*
36915773 TTTA-A-TAATTTAATAA
1 TTTATATTATTTTAAT-A
36915789 TTT-T-TTATTTATTAA-A
1 TTTATATTA-TT-TTAATA
* *
36915805 TTT-TTTTA-TATAATAA
1 TTTATATTATTTTAAT-A
36915821 TCTTAATATTATTTTAATA
1 T-TT-ATATTATTTTAATA
36915840 TTTATATTAT
1 TTTATATTAT
36915850 AATAGTATTA
Statistics
Matches: 60, Mismatches: 5, Indels: 24
0.67 0.06 0.27
Matches are distributed among these distances:
14 3 0.05
15 9 0.15
16 14 0.23
17 17 0.28
18 6 0.10
19 6 0.10
20 5 0.08
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATATTATTTTAATA
Found at i:36917890 original size:19 final size:20
Alignment explanation
Indices: 36917850--36917887 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
36917840 GGTAGAATTG
36917850 TTATTCCTAGAAAATAAAAT
1 TTATTCCTAGAAAATAAAAT
*
36917870 TTATTCTTAGAAAATAAA
1 TTATTCCTAGAAAATAAA
36917888 TTTCCACTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.37
Consensus pattern (20 bp):
TTATTCCTAGAAAATAAAAT
Found at i:36927858 original size:43 final size:43
Alignment explanation
Indices: 36927792--36927882 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
36927782 CACATTGCAA
* * * *
36927792 GGTAATAAAACATACAATGCATTTTCTTAATGAAGTAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
* *
36927835 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
36927878 -GTAAT
1 GGTAAT
36927883 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:36931356 original size:15 final size:16
Alignment explanation
Indices: 36931331--36931360 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
36931321 TTTTATATAT
36931331 TATAGAATATAAATAA
1 TATAGAATATAAATAA
36931347 TATA-AATATAAATA
1 TATAGAATATAAATA
36931361 TGGAATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
TATAGAATATAAATAA
Found at i:36932675 original size:36 final size:36
Alignment explanation
Indices: 36932628--36932699 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
36932618 TAAATTTTCT
*
36932628 CTAGTTTTAGTGGAAAGGCCAACCAATATGCCACTG
1 CTAGTTTTAGTGGAAAGGCCAACCAACATGCCACTG
* * *
36932664 CTAGTTTTAGTGGGAAGGCCAATCAACATGTCACTG
1 CTAGTTTTAGTGGAAAGGCCAACCAACATGCCACTG
36932700 AACCTACTCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (36 bp):
CTAGTTTTAGTGGAAAGGCCAACCAACATGCCACTG
Found at i:36935730 original size:6 final size:6
Alignment explanation
Indices: 36935719--36935748 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
36935709 TTTGGAAAAT
36935719 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
36935749 AAATCGAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:36935959 original size:16 final size:16
Alignment explanation
Indices: 36935933--36935984 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
36935923 AAAAAATACG
* *
36935933 AAAACATAAATCAACA
1 AAAAAATAAATAAACA
*
36935949 AACAAATAAATAAACA
1 AAAAAATAAATAAACA
*
36935965 AAAAAAT--ATAAAGA
1 AAAAAATAAATAAACA
36935979 AAAAAA
1 AAAAAA
36935985 AGTGCATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
16 19 0.61
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAAAATAAATAAACA
Found at i:36937818 original size:6 final size:6
Alignment explanation
Indices: 36937807--36937836 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
36937797 TTTGGAAAAT
36937807 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
36937837 AAATCGAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:36938047 original size:16 final size:16
Alignment explanation
Indices: 36938021--36938072 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
36938011 AAAAAATACG
* *
36938021 AAAACATAAATCAACA
1 AAAAAATAAATAAACA
*
36938037 AACAAATAAATAAACA
1 AAAAAATAAATAAACA
*
36938053 AAAAAAT--ATAAAGA
1 AAAAAATAAATAAACA
36938067 AAAAAA
1 AAAAAA
36938073 AGTGCATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 12 0.39
16 19 0.61
ACGTcount: A:0.77, C:0.10, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAAAATAAATAAACA
Found at i:36939521 original size:15 final size:16
Alignment explanation
Indices: 36939495--36939527 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
36939485 ATTTGGACCC
*
36939495 TATTTTTCTATTTTTT
1 TATTTTTCTATTTGTT
36939511 TATTTTT-TATTTGTT
1 TATTTTTCTATTTGTT
36939526 TA
1 TA
36939528 CTAAGAGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (16 bp):
TATTTTTCTATTTGTT
Found at i:36941110 original size:29 final size:27
Alignment explanation
Indices: 36941058--36941114 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
36941048 ATTTAAACCC
*
36941058 TTTTTTATCTTATTTATTTATTTAGTTT
1 TTTTTTATCTTATTTATATATTTA-TTT
* *
36941086 TTTTTTTTGCTTATTTATATCTTTATTT
1 TTTTTTAT-CTTATTTATATATTTATTT
36941114 T
1 T
36941115 AAACTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.16, C:0.05, G:0.04, T:0.75
Consensus pattern (27 bp):
TTTTTTATCTTATTTATATATTTATTT
Found at i:36941888 original size:112 final size:110
Alignment explanation
Indices: 36941598--36941926 Score: 532
Period size: 110 Copynumber: 3.0 Consensus size: 110
36941588 CATCAAAAAC
* * *
36941598 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGAGAAATTTGAGAAAACGTGCCCTAAGGTACT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
36941663 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
* * *
36941708 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGAAAATTCGAGAGAACGTGCCCCAAGGTGCT
1 AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
36941773 GGGTGTCGATTTTTCTTGTTCAACCAAATGGCTAAATATCCTTTT
66 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
*
36941818 AAAAAATTTTCGAAATAAGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
1 -AAAAATTTTC-AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
* * *
36941883 CTGGGTGTCGATTTTTCTCGTTTAACCAAATAGCCAAATATCCT
64 CTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCT
36941927 CTCGAATTTC
Statistics
Matches: 201, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
110 102 0.51
111 10 0.05
112 89 0.44
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (110 bp):
AAAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
Found at i:36943697 original size:19 final size:19
Alignment explanation
Indices: 36943675--36943716 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
36943665 ATAACATAAT
36943675 AAAAATTTATAA-AAATTAC
1 AAAAATTTA-AATAAATTAC
*
36943694 AAAAATTTAAATAAATTAT
1 AAAAATTTAAATAAATTAC
36943713 AAAA
1 AAAA
36943717 TATATAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATTTAAATAAATTAC
Found at i:36949938 original size:379 final size:379
Alignment explanation
Indices: 36949239--36949995 Score: 1424
Period size: 379 Copynumber: 2.0 Consensus size: 379
36949229 CTGAGACTAT
36949239 GGCTCCATCACCTAGACCAGAGAAGAATAACACTGATTCAATCCAACTCATTTCCTTGCAAGCTT
1 GGCTCCATCACCTAGACCAGAGAAGAATAACACTGATTCAATCCAACTCATTTCCTTGCAAGCTT
* *
36949304 CCTCGGAGACATCCAATTCGGCAAAAACCTGACCTAGGATCAAAACAGCTTCTCTTTTTCGACCG
66 CCTCGGAGACACCCAATTCGGCAAAAACCCGACCTAGGATCAAAACAGCTTCTCTTTTTCGACCG
36949369 AGGAAGAAGCCGTTAAATGTTGCTGATATGCCAATAGACTTAGCCTGAGGCAGGCCAGCACCAAC
131 AGGAAGAAGCCGTTAAATGTTGCTGATATGCCAATAGACTTAGCCTGAGGCAGGCCAGCACCAAC
36949434 AGCGCATGACAAATACATATCACCTTCTAAATTTGGAGCCACATGTTGCCATTTGTTTACTAAAT
196 AGCGCATGACAAATACATATCACCTTCTAAATTTGGAGCCACATGTTGCCATTTGTTTACTAAAT
* *
36949499 TGGCTACATGTGCTATGGTGCCCGGTCTAGACACAATGAAGCTGGTTACGGTTTTTGGTACTTTC
261 TGGCTACATGTGCTATGGTGCCCGGTCTAGACACAATGAAGCTGGTTACGGTCTTTGGTACTCTC
36949564 AATAACTTAATTTTCCAAGCGTAAACGATTCCCCATATGCCACCACCACCACCG
326 AATAACTTAATTTTCCAAGCGTAAACGATTCCCCATATGCCACCACCACCACCG
*
36949618 GGCTCCATCACCTAGACCAGAGAAGAATAACACTGATTCAATCCAACTCATTTCCTTGCAATCTT
1 GGCTCCATCACCTAGACCAGAGAAGAATAACACTGATTCAATCCAACTCATTTCCTTGCAAGCTT
* * *
36949683 CCTCGGCGACACCCAATTCGGCAAAAACCCGGCGTAGGATCAAAACAGCTTCTCTTTTTCGACCG
66 CCTCGGAGACACCCAATTCGGCAAAAACCCGACCTAGGATCAAAACAGCTTCTCTTTTTCGACCG
36949748 AGGAAGAAGCCGTTAAATGTTGCTGATATGCCAATAGACTTAGCCTGAGGCAGGCCAGCACCAAC
131 AGGAAGAAGCCGTTAAATGTTGCTGATATGCCAATAGACTTAGCCTGAGGCAGGCCAGCACCAAC
36949813 AGCGCATGACAAATACATATCACCTTCTAAATTTGGAGCCACATGTTGCCATTTGTTTACTAAAT
196 AGCGCATGACAAATACATATCACCTTCTAAATTTGGAGCCACATGTTGCCATTTGTTTACTAAAT
* *
36949878 TGGCTGCATGTGCTTTGGTGCCCGGTCTAGACACAATGAAGCTGGTTACGGTCTTTGGTACTCTC
261 TGGCTACATGTGCTATGGTGCCCGGTCTAGACACAATGAAGCTGGTTACGGTCTTTGGTACTCTC
36949943 AATAACTTAATTTTCCAAGCGTAAACGATTCCCCATATGCCACCACCACCACC
326 AATAACTTAATTTTCCAAGCGTAAACGATTCCCCATATGCCACCACCACCACC
36949996 TCTAATTGCC
Statistics
Matches: 368, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
379 368 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (379 bp):
GGCTCCATCACCTAGACCAGAGAAGAATAACACTGATTCAATCCAACTCATTTCCTTGCAAGCTT
CCTCGGAGACACCCAATTCGGCAAAAACCCGACCTAGGATCAAAACAGCTTCTCTTTTTCGACCG
AGGAAGAAGCCGTTAAATGTTGCTGATATGCCAATAGACTTAGCCTGAGGCAGGCCAGCACCAAC
AGCGCATGACAAATACATATCACCTTCTAAATTTGGAGCCACATGTTGCCATTTGTTTACTAAAT
TGGCTACATGTGCTATGGTGCCCGGTCTAGACACAATGAAGCTGGTTACGGTCTTTGGTACTCTC
AATAACTTAATTTTCCAAGCGTAAACGATTCCCCATATGCCACCACCACCACCG
Found at i:36951669 original size:9 final size:9
Alignment explanation
Indices: 36951647--36951698 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
36951637 CCCTTAACTG
36951647 ATTTTTA-T
1 ATTTTTATT
* *
36951655 AATTTTATA
1 ATTTTTATT
36951664 ATTTTT-TT
1 ATTTTTATT
*
36951672 ATTTTTTTT
1 ATTTTTATT
*
36951681 ATTTTTTTT
1 ATTTTTATT
36951690 ATTTTTATT
1 ATTTTTATT
36951699 TATATTAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
8 13 0.35
9 24 0.65
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
ATTTTTATT
Found at i:36951678 original size:10 final size:9
Alignment explanation
Indices: 36951665--36951701 Score: 65
Period size: 9 Copynumber: 4.0 Consensus size: 9
36951655 AATTTTATAA
36951665 TTTTTTTAT
1 TTTTTTTAT
36951674 TTTTTTTAT
1 TTTTTTTAT
36951683 TTTTTTTAT
1 TTTTTTTAT
36951692 TTTTATTTAT
1 TTTT-TTTAT
36951702 ATTAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 22 0.81
10 5 0.19
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:36951678 original size:18 final size:18
Alignment explanation
Indices: 36951657--36951695 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
36951647 ATTTTTATAA
36951657 TTTTATAATTTTTTTATT
1 TTTTATAATTTTTTTATT
* *
36951675 TTTTTTATTTTTTTTATT
1 TTTTATAATTTTTTTATT
36951693 TTT
1 TTT
36951696 ATTTATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTATAATTTTTTTATT
Found at i:36953683 original size:9 final size:9
Alignment explanation
Indices: 36953661--36953712 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
36953651 CCCTTAACTG
36953661 ATTTTTA-T
1 ATTTTTATT
* *
36953669 AATTTTATA
1 ATTTTTATT
36953678 ATTTTT-TT
1 ATTTTTATT
*
36953686 ATTTTTTTT
1 ATTTTTATT
*
36953695 ATTTTTTTT
1 ATTTTTATT
36953704 ATTTTTATT
1 ATTTTTATT
36953713 TATATTAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
8 13 0.35
9 24 0.65
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
ATTTTTATT
Found at i:36953692 original size:10 final size:9
Alignment explanation
Indices: 36953679--36953715 Score: 65
Period size: 9 Copynumber: 4.0 Consensus size: 9
36953669 AATTTTATAA
36953679 TTTTTTTAT
1 TTTTTTTAT
36953688 TTTTTTTAT
1 TTTTTTTAT
36953697 TTTTTTTAT
1 TTTTTTTAT
36953706 TTTTATTTAT
1 TTTT-TTTAT
36953716 ATTAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 22 0.81
10 5 0.19
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:36953692 original size:18 final size:18
Alignment explanation
Indices: 36953671--36953709 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
36953661 ATTTTTATAA
36953671 TTTTATAATTTTTTTATT
1 TTTTATAATTTTTTTATT
* *
36953689 TTTTTTATTTTTTTTATT
1 TTTTATAATTTTTTTATT
36953707 TTT
1 TTT
36953710 ATTTATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTATAATTTTTTTATT
Found at i:36957084 original size:18 final size:18
Alignment explanation
Indices: 36957061--36957104 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
36957051 TTCCCTTAAC
36957061 TGATTTTTATAATTTTTT
1 TGATTTTTATAATTTTTT
*
36957079 TGATTTTTATGATTTTTT
1 TGATTTTTATAATTTTTT
*
36957097 TTATTTTT
1 TGATTTTT
36957105 GAATTTGTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (18 bp):
TGATTTTTATAATTTTTT
Found at i:36957102 original size:9 final size:9
Alignment explanation
Indices: 36957061--36957104 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
36957051 TTCCCTTAAC
*
36957061 TGATTTTTA
1 TGATTTTTT
*
36957070 TAATTTTTT
1 TGATTTTTT
*
36957079 TGATTTTTA
1 TGATTTTTT
36957088 TGATTTTTT
1 TGATTTTTT
*
36957097 TTATTTTT
1 TGATTTTT
36957105 GAATTTGTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (9 bp):
TGATTTTTT
Found at i:36959355 original size:46 final size:47
Alignment explanation
Indices: 36959304--36959409 Score: 126
Period size: 47 Copynumber: 2.3 Consensus size: 47
36959294 TTTCTCAAAA
** * *
36959304 ACACCTTTTTAACACA-TTTAAAAAAATCTATTAAGGTATGAT-AAGT
1 ACACCTTTTTAACACACTCGAAAAAAATATATTAAGATATGATGAA-T
* *
36959350 ACACCTTTCTAACACACTCGAAAAAAATATATTATGATATGATGAAT
1 ACACCTTTTTAACACACTCGAAAAAAATATATTAAGATATGATGAAT
*
36959397 ACACATTTTTAAC
1 ACACCTTTTTAAC
36959410 GCAAATATAT
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
46 15 0.30
47 33 0.66
48 2 0.04
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (47 bp):
ACACCTTTTTAACACACTCGAAAAAAATATATTAAGATATGATGAAT
Found at i:36962347 original size:13 final size:14
Alignment explanation
Indices: 36962331--36962379 Score: 66
Period size: 13 Copynumber: 3.6 Consensus size: 14
36962321 TTACTTATTT
*
36962331 AATTAATTTAA-TT
1 AATTAATTTAACTA
*
36962344 AATTACTTTAACTA
1 AATTAATTTAACTA
36962358 AATTAA-TTAACTA
1 AATTAATTTAACTA
36962371 AATTAATTT
1 AATTAATTT
36962380 TCCAATTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 23 0.74
14 8 0.26
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (14 bp):
AATTAATTTAACTA
Found at i:36964015 original size:9 final size:9
Alignment explanation
Indices: 36963997--36964027 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36963987 TTTGGTTAAA
36963997 AATTAACCG
1 AATTAACCG
*
36964006 AATTACCCG
1 AATTAACCG
36964015 AATTAACCG
1 AATTAACCG
36964024 AATT
1 AATT
36964028 GAATCACTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:36964141 original size:5 final size:5
Alignment explanation
Indices: 36964131--36964171 Score: 55
Period size: 5 Copynumber: 7.6 Consensus size: 5
36964121 ATTTTTATGA
36964131 TTGGG TTGGG TTGGG TAATTGGG TTGGG TTGGG TTGGG TTG
1 TTGGG TTGGG TTGGG ---TTGGG TTGGG TTGGG TTGGG TTG
36964172 AATACTTGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 28 0.85
8 5 0.15
ACGTcount: A:0.05, C:0.00, G:0.54, T:0.41
Consensus pattern (5 bp):
TTGGG
Found at i:36964153 original size:18 final size:18
Alignment explanation
Indices: 36964130--36964164 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
36964120 AATTTTTATG
36964130 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGGGTA
36964148 ATTGGGTTGGGTTGGGT
1 ATTGGGTTGGGTTGGGT
36964165 TGGGTTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.09, C:0.00, G:0.51, T:0.40
Consensus pattern (18 bp):
ATTGGGTTGGGTTGGGTA
Found at i:36964202 original size:29 final size:28
Alignment explanation
Indices: 36964129--36964204 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 28
36964119 TAATTTTTAT
* ** *
36964129 GATTGGGTTGGGTTGGGTAATTGGGTTG
1 GATTGGGTTAGGTTGAATACTTGGGTTG
* *
36964157 GGTTGGGTTGGGTTGAATACTTGGGTTTG
1 GATTGGGTTAGGTTGAATACTTGGG-TTG
36964186 GATTGGGTTTAGG-TGAATA
1 GATTGGG-TTAGGTTGAATA
36964205 GTGGGCCTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 21 0.52
29 15 0.38
30 4 0.10
ACGTcount: A:0.14, C:0.01, G:0.45, T:0.39
Consensus pattern (28 bp):
GATTGGGTTAGGTTGAATACTTGGGTTG
Found at i:36964748 original size:30 final size:31
Alignment explanation
Indices: 36964707--36964788 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 31
36964697 GTTCAAGGAT
* *
36964707 TAAAAT-TTATC-ACCTTAATATCAAATTAA
1 TAAAATATTATCAACATAAATATCAAATTAA
*
36964736 TAAAATATTATCAAGATAAATATCAAATTAA
1 TAAAATATTATCAACATAAATATCAAATTAA
* * *
36964767 -ATAATATTATAAAGATAAATAT
1 TAAAATATTATCAACATAAATAT
36964789 TTAATTTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 6 0.13
30 25 0.54
31 15 0.33
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.35
Consensus pattern (31 bp):
TAAAATATTATCAACATAAATATCAAATTAA
Found at i:36964759 original size:31 final size:30
Alignment explanation
Indices: 36964723--36964788 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
36964713 TTATCACCTT
*
36964723 AATATCAAATTAATAAAATATTATCAAGATA
1 AATATCAAATTAA-AAAATATTATAAAGATA
*
36964754 AATATCAAATTAAATAATATTATAAAGATA
1 AATATCAAATTAAAAAATATTATAAAGATA
36964784 AATAT
1 AATAT
36964789 TTAATTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 20 0.61
31 13 0.39
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (30 bp):
AATATCAAATTAAAAAATATTATAAAGATA
Found at i:36969284 original size:14 final size:14
Alignment explanation
Indices: 36969265--36969294 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36969255 GACTAGAAGA
36969265 TATAAAATAAAAAC
1 TATAAAATAAAAAC
36969279 TATAAAATAAAAAC
1 TATAAAATAAAAAC
36969293 TA
1 TA
36969295 AACATGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (14 bp):
TATAAAATAAAAAC
Found at i:36977941 original size:15 final size:16
Alignment explanation
Indices: 36977914--36977949 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
36977904 TAAATATAAA
36977914 TTAT-TTTATATTTAT
1 TTATATTTATATTTAT
36977929 TTATATTTA-ATTTAT
1 TTATATTTATATTTAT
36977944 TT-TATT
1 TTATATT
36977950 CGCTAACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.20
15 12 0.60
16 4 0.20
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTATATTTATATTTAT
Found at i:36978976 original size:28 final size:28
Alignment explanation
Indices: 36978922--36978977 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
36978912 GTTCATCCCT
* * *
36978922 CTAAGGGTGCAACTCTTTCACCCTTCCA
1 CTAAGGGTACAACCCTTTCACCATTCCA
36978950 CTAAGGGTACAACCCTCTT-ACCATTCCA
1 CTAAGGGTACAACCCT-TTCACCATTCCA
36978978 AAAATTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.25, C:0.36, G:0.12, T:0.27
Consensus pattern (28 bp):
CTAAGGGTACAACCCTTTCACCATTCCA
Found at i:36980708 original size:6 final size:6
Alignment explanation
Indices: 36980699--36980731 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
36980689 GCAGGCTAAC
36980699 AAAAGA AAAA-A AAAAGA AAAAG- AAAAGA AAAAG
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAG
36980732 GGAAGAGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:36980719 original size:17 final size:17
Alignment explanation
Indices: 36980699--36980731 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36980689 GCAGGCTAAC
36980699 AAAAGAAAAAAAAAAGA
1 AAAAGAAAAAAAAAAGA
*
36980716 AAAAGAAAAGAAAAAG
1 AAAAGAAAAAAAAAAG
36980732 GGAAGAGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAAAAAAGA
Found at i:36980737 original size:11 final size:11
Alignment explanation
Indices: 36980699--36980731 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
36980689 GCAGGCTAAC
*
36980699 AAAAGAAAAAA
1 AAAAGAAAAAG
36980710 AAAAGAAAAAG
1 AAAAGAAAAAG
36980721 AAAAGAAAAAG
1 AAAAGAAAAAG
36980732 GGAAGAGGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:36983062 original size:30 final size:31
Alignment explanation
Indices: 36983023--36983082 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
36983013 GGAGGTGGGA
*
36983023 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
36983054 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
36983083 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:36983315 original size:9 final size:9
Alignment explanation
Indices: 36983297--36983333 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
36983287 TATACTTTGA
36983297 TATTCGAAT
1 TATTCGAAT
*
36983306 TATTCAAAT
1 TATTCGAAT
*
36983315 TATTCGAGT
1 TATTCGAAT
36983324 TATTCGAAT
1 TATTCGAAT
36983333 T
1 T
36983334 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:36985712 original size:21 final size:21
Alignment explanation
Indices: 36985673--36985712 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
36985663 AGCCTAAAAA
* *
36985673 CCTATATAAACTATTCTAAAT
1 CCTATACAAACTATACTAAAT
*
36985694 CCTATACAAAGTATACTAA
1 CCTATACAAACTATACTAA
36985713 CACATGTACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.33
Consensus pattern (21 bp):
CCTATACAAACTATACTAAAT
Found at i:36986491 original size:20 final size:20
Alignment explanation
Indices: 36986466--36986505 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36986456 CGTAAAATGA
*
36986466 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
36986486 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
36986506 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:36986495 original size:34 final size:35
Alignment explanation
Indices: 36986451--36986517 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
36986441 CAGTAAAATA
*
36986451 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
36986485 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
36986518 CTGGTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:36986521 original size:14 final size:15
Alignment explanation
Indices: 36986445--36986521 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
36986435 GATTGCCAGT
* *
36986445 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
36986459 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
36986473 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
36986493 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
36986508 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
36986522 TATTTAATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:36991291 original size:314 final size:314
Alignment explanation
Indices: 36990722--36991356 Score: 1270
Period size: 314 Copynumber: 2.0 Consensus size: 314
36990712 GAGGATAAGT
36990722 TTATGGGTCTGTTTAGGTTTGGAAAGTGTTTTTCATTTTACACCTCCACTATTACTGCAATATGA
1 TTATGGGTCTGTTTAGGTTTGGAAAGTGTTTTTCATTTTACACCTCCACTATTACTGCAATATGA
36990787 TGAACAAAAATATTTATAAAGAGATTCAATTAAACTGGTAAATAACTAAGTTTTGAAATCCTTTT
66 TGAACAAAAATATTTATAAAGAGATTCAATTAAACTGGTAAATAACTAAGTTTTGAAATCCTTTT
36990852 TTATCTAAATTCTGAACAAACTAGACAACTATTTTAGCTTGTTTCTTTTTTAATTTCTAATGTAT
131 TTATCTAAATTCTGAACAAACTAGACAACTATTTTAGCTTGTTTCTTTTTTAATTTCTAATGTAT
36990917 TATTGAAATCAATTTGCTTAAGGTAGAGATAGACGAAAAAAATCAGTTCTATATATGCACAATGG
196 TATTGAAATCAATTTGCTTAAGGTAGAGATAGACGAAAAAAATCAGTTCTATATATGCACAATGG
36990982 TAACTTTTATTTTGTGCTGCCTTGTTTAGTGAAGAATCAGGAACTTTTCCAGGC
261 TAACTTTTATTTTGTGCTGCCTTGTTTAGTGAAGAATCAGGAACTTTTCCAGGC
36991036 TTATGGGTCTGTTTAGGTTTGGAAAGTGTTTTTCATTTTACACCTCCACTATTACTGCAATATGA
1 TTATGGGTCTGTTTAGGTTTGGAAAGTGTTTTTCATTTTACACCTCCACTATTACTGCAATATGA
36991101 TGAACAAAAATATTTATAAAGAGATTCAATTAAACTGGTAAATAACTAAGTTTTGAAATCCTTTT
66 TGAACAAAAATATTTATAAAGAGATTCAATTAAACTGGTAAATAACTAAGTTTTGAAATCCTTTT
36991166 TTATCTAAATTCTGAACAAACTAGACAACTATTTTAGCTTGTTTCTTTTTTAATTTCTAATGTAT
131 TTATCTAAATTCTGAACAAACTAGACAACTATTTTAGCTTGTTTCTTTTTTAATTTCTAATGTAT
36991231 TATTGAAATCAATTTGCTTAAGGTAGAGATAGACGAAAAAAATCAGTTCTATATATGCACAATGG
196 TATTGAAATCAATTTGCTTAAGGTAGAGATAGACGAAAAAAATCAGTTCTATATATGCACAATGG
36991296 TAACTTTTATTTTGTGCTGCCTTGTTTAGTGAAGAATCAGGAACTTTTCCAGGC
261 TAACTTTTATTTTGTGCTGCCTTGTTTAGTGAAGAATCAGGAACTTTTCCAGGC
36991350 TTATGGG
1 TTATGGG
36991357 AACATAATAA
Statistics
Matches: 321, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
314 321 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (314 bp):
TTATGGGTCTGTTTAGGTTTGGAAAGTGTTTTTCATTTTACACCTCCACTATTACTGCAATATGA
TGAACAAAAATATTTATAAAGAGATTCAATTAAACTGGTAAATAACTAAGTTTTGAAATCCTTTT
TTATCTAAATTCTGAACAAACTAGACAACTATTTTAGCTTGTTTCTTTTTTAATTTCTAATGTAT
TATTGAAATCAATTTGCTTAAGGTAGAGATAGACGAAAAAAATCAGTTCTATATATGCACAATGG
TAACTTTTATTTTGTGCTGCCTTGTTTAGTGAAGAATCAGGAACTTTTCCAGGC
Found at i:36996786 original size:21 final size:21
Alignment explanation
Indices: 36996762--36996830 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
36996752 AGTTTAAGTT
36996762 TTTTTATATATAATAATTTTA
1 TTTTTATATATAATAATTTTA
* * **
36996783 TTTTAAT-TTTAGGACATTTTA
1 TTTTTATATATAATA-ATTTTA
* *
36996804 TTTTTAAAATATAATTAATGTTA
1 TTTTT-ATATATAA-TAATTTTA
36996827 TTTT
1 TTTT
36996831 AATAGCCTTG
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
20 4 0.12
21 16 0.47
22 1 0.03
23 12 0.35
24 1 0.03
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (21 bp):
TTTTTATATATAATAATTTTA
Found at i:37000174 original size:102 final size:102
Alignment explanation
Indices: 36999998--37000194 Score: 376
Period size: 102 Copynumber: 1.9 Consensus size: 102
36999988 GAAGATGATA
36999998 AGAATGAAATAGGTACTGAAAATACTGCATTTGTGCATGGGAAACCACCTCAAGATGCTGCTGGA
1 AGAATGAAATAGGTACTGAAAATACTGCATTTGTGCATGGGAAACCACCTCAAGATGCTGCTGGA
37000063 CCTCCGAAAGTTGAATCTGATATGGAAATTGTTGAGG
66 CCTCCGAAAGTTGAATCTGATATGGAAATTGTTGAGG
* *
37000100 AGAATGAAATAGTTACTGAAAATACTGCATTTGTGCATGGGGAACCACCTCAAGATGCTGCTGGA
1 AGAATGAAATAGGTACTGAAAATACTGCATTTGTGCATGGGAAACCACCTCAAGATGCTGCTGGA
37000165 CCTCCGAAAGTTGAATCTGATATGGAAATT
66 CCTCCGAAAGTTGAATCTGATATGGAAATT
37000195 CTTCATGAAA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 93 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (102 bp):
AGAATGAAATAGGTACTGAAAATACTGCATTTGTGCATGGGAAACCACCTCAAGATGCTGCTGGA
CCTCCGAAAGTTGAATCTGATATGGAAATTGTTGAGG
Found at i:37000506 original size:44 final size:44
Alignment explanation
Indices: 37000433--37000523 Score: 119
Period size: 44 Copynumber: 2.1 Consensus size: 44
37000423 GCTGCAACTA
*
37000433 GAAGCTTGAATCTTGTATCTGGTTATTTTAATCAACATCTTAAT
1 GAAGCTTGAATCTTGTATCTGATTATTTTAATCAACATCTTAAT
* * * * * *
37000477 GAAGTTTGAATCTTTTATCTTATTCTTTTACTCAACATCTTGAT
1 GAAGCTTGAATCTTGTATCTGATTATTTTAATCAACATCTTAAT
37000521 GAA
1 GAA
37000524 ACTATACTGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (44 bp):
GAAGCTTGAATCTTGTATCTGATTATTTTAATCAACATCTTAAT
Found at i:37003532 original size:31 final size:31
Alignment explanation
Indices: 37003494--37003555 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
37003484 CTTAAATTTG
**
37003494 TTTGAAAAGTATAGAGGTTAAAATTGATCAA
1 TTTGAAAAGTATAGAGACTAAAATTGATCAA
*
37003525 TTTGAAAAGTATATAGACTAAAATTGATCAA
1 TTTGAAAAGTATAGAGACTAAAATTGATCAA
37003556 ATAAAAGTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.47, C:0.05, G:0.16, T:0.32
Consensus pattern (31 bp):
TTTGAAAAGTATAGAGACTAAAATTGATCAA
Found at i:37003846 original size:32 final size:33
Alignment explanation
Indices: 37003810--37003874 Score: 96
Period size: 34 Copynumber: 2.0 Consensus size: 33
37003800 TTTTATTATA
* *
37003810 AATTT-TATATTTTGTATATCATAATATTAATG
1 AATTTATATATTCTATATATCATAATATTAATG
37003842 AATTTCATATATTCTATATATCATAATATTAAT
1 AATTT-ATATATTCTATATATCATAATATTAAT
37003875 TACTTAATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 5 0.17
34 24 0.83
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (33 bp):
AATTTATATATTCTATATATCATAATATTAATG
Found at i:37012013 original size:18 final size:17
Alignment explanation
Indices: 37011972--37012013 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
37011962 ACTCACCTTT
37011972 AAAAAAAGTAAAGTTGA
1 AAAAAAAGTAAAGTTGA
37011989 AAGAAAAAGTGAAATGTT-A
1 AA-AAAAAGT-AAA-GTTGA
37012008 AAAAAA
1 AAAAAA
37012014 CCCCTATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.09
18 11 0.50
19 6 0.27
20 3 0.14
ACGTcount: A:0.67, C:0.00, G:0.17, T:0.17
Consensus pattern (17 bp):
AAAAAAAGTAAAGTTGA
Found at i:37019795 original size:364 final size:364
Alignment explanation
Indices: 37019126--37019854 Score: 1431
Period size: 364 Copynumber: 2.0 Consensus size: 364
37019116 GATGATCACT
37019126 AAGCAGTAGTTTTTAATAGGACAAAAAGTTCTCCTATACGACTCCACCTTAAAAATTTTCGCTAG
1 AAGCAGTAGTTTTTAATAGGACAAAAAGTTCTCCTATACGACTCCACCTTAAAAATTTTCGCTAG
37019191 TAAGCTTCGATCCAAATGGATAGGTCCATTTACTATCACTAATTTATTCTCAAATGGTGCAGTGG
66 TAAGCTTCGATCCAAATGGATAGGTCCATTTACTATCACTAATTTATTCTCAAATGGTGCAGTGG
37019256 AAATTCAAAGCGAAGAAACCCGGAAGTGCTTTAAGGTGAATGGTCAACGATTGAAACCCTTATAC
131 AAATTCAAAGCGAAGAAACCCGGAAGTGCTTTAAGGTGAATGGTCAACGATTGAAACCCTTATAC
*
37019321 GAGAATTTTCAAATACACACGATTGAGGAGATTGTTCTCGAGGAGCCCAGAATTTGAATAACAGG
196 GAGAATTTTCAAATACACACGATTGAAGAGATTGTTCTCGAGGAGCCCAGAATTTGAATAACAGG
37019386 TCGTCGAGCTAAACGACGTTAAATAAAGCGCTGTTGGGAGGCAACCCAAATTTTCTTTTCCTTTA
261 TCGTCGAGCTAAACGACGTTAAATAAAGCGCTGTTGGGAGGCAACCCAAATTTTCTTTTCCTTTA
37019451 TGCAAATAAAATTTTTGGTAAAATGGAAAATGAAAATGC
326 TGCAAATAAAATTTTTGGTAAAATGGAAAATGAAAATGC
37019490 AAGCAGTAGTTTTTAATAGGACAAAAAGTTCTCCTATACGACTCCACCTTAAAAATTTTCGCTAG
1 AAGCAGTAGTTTTTAATAGGACAAAAAGTTCTCCTATACGACTCCACCTTAAAAATTTTCGCTAG
37019555 TAAGCTTCGATCCAAATGGATAGGTCCATTTACTATCACTAATTTATTCTCAAATGGTGCAGTGG
66 TAAGCTTCGATCCAAATGGATAGGTCCATTTACTATCACTAATTTATTCTCAAATGGTGCAGTGG
*
37019620 AAATTCAAAGCGAAGAAACCCGGAAGTGCTTTAAGGTGAATGGTCAACGATTGAAACCCTTCTAC
131 AAATTCAAAGCGAAGAAACCCGGAAGTGCTTTAAGGTGAATGGTCAACGATTGAAACCCTTATAC
*
37019685 GAGAATTTTCAAATGCACACGATTGAAGAGATTGTTCTCGAGGAGCCCAGAATTTGAATAACAGG
196 GAGAATTTTCAAATACACACGATTGAAGAGATTGTTCTCGAGGAGCCCAGAATTTGAATAACAGG
37019750 TCGTCGAGCTAAACGACGTTAAATAAAGCGCTGTTGGGAGGCAACCCAAATTTTCTTTTCCTTTA
261 TCGTCGAGCTAAACGACGTTAAATAAAGCGCTGTTGGGAGGCAACCCAAATTTTCTTTTCCTTTA
37019815 TGCAAATAAAATTTTTGGTAAAATGGAAAATGAAAATGC
326 TGCAAATAAAATTTTTGGTAAAATGGAAAATGAAAATGC
37019854 A
1 A
37019855 TGTTGAGGAT
Statistics
Matches: 362, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
364 362 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (364 bp):
AAGCAGTAGTTTTTAATAGGACAAAAAGTTCTCCTATACGACTCCACCTTAAAAATTTTCGCTAG
TAAGCTTCGATCCAAATGGATAGGTCCATTTACTATCACTAATTTATTCTCAAATGGTGCAGTGG
AAATTCAAAGCGAAGAAACCCGGAAGTGCTTTAAGGTGAATGGTCAACGATTGAAACCCTTATAC
GAGAATTTTCAAATACACACGATTGAAGAGATTGTTCTCGAGGAGCCCAGAATTTGAATAACAGG
TCGTCGAGCTAAACGACGTTAAATAAAGCGCTGTTGGGAGGCAACCCAAATTTTCTTTTCCTTTA
TGCAAATAAAATTTTTGGTAAAATGGAAAATGAAAATGC
Found at i:37020081 original size:18 final size:18
Alignment explanation
Indices: 37020036--37020087 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
37020026 TTGAAAAGAA
* *
37020036 ATTTTTTTTAATTTTCCT
1 ATTTTATTTAATTTTACT
37020054 ATTATTATTTAATTTTACT
1 ATT-TTATTTAATTTTACT
*
37020073 ATTTTATTTTATTTT
1 ATTTTATTTAATTTT
37020088 TGTAGGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTATTTAATTTTACT
Found at i:37022902 original size:25 final size:25
Alignment explanation
Indices: 37022872--37022927 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
37022862 TTACCGAACG
37022872 CTGAAGTCTTCCCATTTCTTTTACA
1 CTGAAGTCTTCCCATTTCTTTTACA
*
37022897 CTGAAGTCTTCCCATTTCTTTTACT
1 CTGAAGTCTTCCCATTTCTTTTACA
37022922 CTGAAG
1 CTGAAG
37022928 AAATCCGATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.20, C:0.27, G:0.11, T:0.43
Consensus pattern (25 bp):
CTGAAGTCTTCCCATTTCTTTTACA
Found at i:37025887 original size:28 final size:28
Alignment explanation
Indices: 37025855--37025909 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
37025845 AAATCTTCCA
*
37025855 TCTCCATCCCATCCTCGTTCTTCATTTG
1 TCTCCATCCCATCCTCATTCTTCATTTG
*
37025883 TCTCCATCCCATCCTCATTCTTTATTT
1 TCTCCATCCCATCCTCATTCTTCATTT
37025910 TGCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.13, C:0.38, G:0.04, T:0.45
Consensus pattern (28 bp):
TCTCCATCCCATCCTCATTCTTCATTTG
Found at i:37029482 original size:29 final size:30
Alignment explanation
Indices: 37029448--37029506 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
37029438 TTTAATAAAA
37029448 TGTGCAAAGTCATACATG-AATTTTGATTT
1 TGTGCAAAGTCATACATGAAATTTTGATTT
** *
37029477 TGTGCAATTTGATACATGAAATTTTGATTT
1 TGTGCAAAGTCATACATGAAATTTTGATTT
37029507 AGTTCATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (30 bp):
TGTGCAAAGTCATACATGAAATTTTGATTT
Found at i:37036178 original size:19 final size:19
Alignment explanation
Indices: 37036136--37036176 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
37036126 CACATTCTTG
* *
37036136 AAATTTTAGAATTATGTTA
1 AAATTTTAAAATTAAGTTA
37036155 AAATTTTAAAATTAAGATTA
1 AAATTTTAAAATTAAG-TTA
37036175 AA
1 AA
37036177 TTAACAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (19 bp):
AAATTTTAAAATTAAGTTA
Found at i:37040600 original size:2 final size:2
Alignment explanation
Indices: 37040593--37040621 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
37040583 TTGAGTCTTT
37040593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37040622 TCTACGATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37046757 original size:23 final size:23
Alignment explanation
Indices: 37046724--37046776 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
37046714 TTCGAACCGA
*
37046724 CTGCTATCGCCTCAATGGCTTTC
1 CTGCTAACGCCTCAATGGCTTTC
37046747 CTGCTAACGCCTCAATGGCTTTC
1 CTGCTAACGCCTCAATGGCTTTC
37046770 CTGCTAA
1 CTGCTAA
37046777 TTTCAAGTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (23 bp):
CTGCTAACGCCTCAATGGCTTTC
Found at i:37051112 original size:46 final size:46
Alignment explanation
Indices: 37051056--37051240 Score: 190
Period size: 46 Copynumber: 4.0 Consensus size: 46
37051046 AGTTTTTCCC
* *
37051056 AGGTTCCGAGCTCCTACATATGTTGCGGACTCGAGAATACATGAAT
1 AGGTTTCGAGCTCCTACATATGTTGCGGACTCGAGAATACAGGAAT
* * *
37051102 AGGTTTCGAGCTCCTATATATGTTGTGGATTCGAGAATACAGGAAT
1 AGGTTTCGAGCTCCTACATATGTTGCGGACTCGAGAATACAGGAAT
* * * * * * * **
37051148 AAGTTTTGAGCTTCTGCATATGTTGCAGACTTGAGAATACAAGTTT
1 AGGTTTCGAGCTCCTACATATGTTGCGGACTCGAGAATACAGGAAT
* * * * * *
37051194 AGATTTTGAGCTCCTGCATATGTTGTGGGCTTGAGAATACAGGAAT
1 AGGTTTCGAGCTCCTACATATGTTGCGGACTCGAGAATACAGGAAT
37051240 A
1 A
37051241 TTAAGCCCTG
Statistics
Matches: 113, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 113 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (46 bp):
AGGTTTCGAGCTCCTACATATGTTGCGGACTCGAGAATACAGGAAT
Found at i:37051185 original size:92 final size:92
Alignment explanation
Indices: 37051063--37051240 Score: 232
Period size: 92 Copynumber: 1.9 Consensus size: 92
37051053 CCCAGGTTCC
* * * *
37051063 GAGCTCCTACATATGTTGCGGACTCGAGAATACATGAATAGGTTTCGAGCTCCTATATATGTTGT
1 GAGCTCCTACATATGTTGCAGACTCGAGAATACAAGAATAGATTTCGAGCTCCTACATATGTTGT
37051128 -GGATTCGAGAATACAGGAATAAGTTTT
66 GGGATT-GAGAATACAGGAATAAGTTTT
* * * ** * *
37051155 GAGCTTCTGCATATGTTGCAGACTTGAGAATACAAGTTTAGATTTTGAGCTCCTGCATATGTTGT
1 GAGCTCCTACATATGTTGCAGACTCGAGAATACAAGAATAGATTTCGAGCTCCTACATATGTTGT
*
37051220 GGGCTTGAGAATACAGGAATA
66 GGGATTGAGAATACAGGAATA
37051241 TTAAGCCCTG
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
92 69 0.95
93 4 0.05
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.32
Consensus pattern (92 bp):
GAGCTCCTACATATGTTGCAGACTCGAGAATACAAGAATAGATTTCGAGCTCCTACATATGTTGT
GGGATTGAGAATACAGGAATAAGTTTT
Found at i:37055357 original size:16 final size:16
Alignment explanation
Indices: 37055338--37055368 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37055328 CCCTTTCTTT
*
37055338 TTCTTTTTTTTTTCCA
1 TTCTATTTTTTTTCCA
37055354 TTCTATTTTTTTTCC
1 TTCTATTTTTTTTCC
37055369 TCTTTCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTATTTTTTTTCCA
Found at i:37056261 original size:9 final size:9
Alignment explanation
Indices: 37056242--37056280 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
37056232 AAATATATTC
37056242 TTTTA-AAT
1 TTTTATAAT
37056250 TTTTATAAT
1 TTTTATAAT
37056259 TTTTATAA-
1 TTTTATAAT
*
37056267 TTTTAAAAT
1 TTTTATAAT
37056276 TTTTA
1 TTTTA
37056281 AAAAATAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 12 0.43
9 16 0.57
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:37057589 original size:21 final size:21
Alignment explanation
Indices: 37057565--37057629 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
37057555 TATTCTGAAA
*
37057565 ATTTTTAAATTTTTTAACTTT
1 ATTTATAAATTTTTTAACTTT
* *
37057586 ATTTATATATTATTTTAGA-ATT
1 ATTTATAAATT-TTTTA-ACTTT
37057608 -TTTATAAATATTTTTAACTTT
1 ATTTATAAAT-TTTTTAACTTT
37057629 A
1 A
37057630 AAAATTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
20 1 0.03
21 24 0.71
22 8 0.24
23 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.62
Consensus pattern (21 bp):
ATTTATAAATTTTTTAACTTT
Found at i:37062522 original size:32 final size:33
Alignment explanation
Indices: 37062460--37062527 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 33
37062450 AGTGTACGAG
* *
37062460 TTTAGCTTCAATGTTATATTTGGTAATT-AAAT
1 TTTAGCTTCAATATTATATTTAGTAATTAAAAT
* *
37062492 TTTAGCTTTAATATT-TGATTTAGTACTTAAAAT
1 TTTAGCTTCAATATTAT-ATTTAGTAATTAAAAT
37062525 TTT
1 TTT
37062528 CTATCCCATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
31 1 0.03
32 22 0.73
33 7 0.23
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.53
Consensus pattern (33 bp):
TTTAGCTTCAATATTATATTTAGTAATTAAAAT
Found at i:37063121 original size:2 final size:2
Alignment explanation
Indices: 37063110--37063138 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
37063100 TTTGTCTATT
37063110 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37063139 AAAGCATGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:37064106 original size:19 final size:20
Alignment explanation
Indices: 37064082--37064126 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
37064072 ATTATATTTA
37064082 AAAATTCAAAT-AATGAATT
1 AAAATTCAAATAAATGAATT
** *
37064101 AAAATTTTAATAAATTAATT
1 AAAATTCAAATAAATGAATT
37064121 AAAATT
1 AAAATT
37064127 TAATATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (20 bp):
AAAATTCAAATAAATGAATT
Found at i:37064126 original size:26 final size:26
Alignment explanation
Indices: 37064078--37064156 Score: 86
Period size: 26 Copynumber: 2.9 Consensus size: 26
37064068 TTTTATTATA
* *
37064078 TTTAAAAATTCAAATAATGAATTAAAAT
1 TTTAAAAATT-AATTAA-AAATTAAAAT
* *
37064106 TTTAATAAATTAATTAAAATTTAATAT
1 TTTAA-AAATTAATTAAAAATTAAAAT
*
37064133 TTTTAAAATTAATTAAAAATTAAA
1 TTTAAAAATTAATTAAAAATTAAA
37064157 TACTTAAAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 17 0.40
27 11 0.26
28 10 0.23
29 5 0.12
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (26 bp):
TTTAAAAATTAATTAAAAATTAAAAT
Found at i:37064158 original size:27 final size:27
Alignment explanation
Indices: 37064097--37064158 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
37064087 TCAAATAATG
37064097 AATTAAA-ATTTTAATAAATTAATTAA
1 AATTAAATATTTTAATAAATTAATTAA
* *
37064123 AATTTAATATTTTTA-AAATTAATTAAA
1 AATTAAATATTTTAATAAATTAATT-AA
37064150 AATTAAATA
1 AATTAAATA
37064159 CTTAAAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.48
27 16 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
AATTAAATATTTTAATAAATTAATTAA
Found at i:37064163 original size:25 final size:26
Alignment explanation
Indices: 37064112--37064168 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
37064102 AAATTTTAAT
* **
37064112 AAATTAATTAAAATTTAATATTTTTA
1 AAATTAATTAAAAATTAATATACTTA
37064138 AAATTAATTAAAAATTAA-ATACTTA
1 AAATTAATTAAAAATTAATATACTTA
37064163 AAATTA
1 AAATTA
37064169 CATGCAACGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
AAATTAATTAAAAATTAATATACTTA
Found at i:37069682 original size:9 final size:9
Alignment explanation
Indices: 37069668--37069743 Score: 82
Period size: 9 Copynumber: 8.4 Consensus size: 9
37069658 TTTGGTTAAA
37069668 AATTAACCG
1 AATTAACCG
*
37069677 AATTAACTG
1 AATTAACCG
*
37069686 AATTAACTG
1 AATTAACCG
*
37069695 AATTACCCG
1 AATTAACCG
**
37069704 AATTAATTG
1 AATTAACCG
37069713 AATT-ACCTG
1 AATTAACC-G
*
37069722 AATTACCCG
1 AATTAACCG
37069731 AATTAACCG
1 AATTAACCG
37069740 AATT
1 AATT
37069744 GAATCACTAC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
8 1 0.02
9 52 0.95
10 2 0.04
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTAACCG
Found at i:37069704 original size:27 final size:27
Alignment explanation
Indices: 37069668--37069743 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
37069658 TTTGGTTAAA
*
37069668 AATTAACCGAATTAACTGAATTAACTG
1 AATTACCCGAATTAACTGAATTAACTG
* *
37069695 AATTACCCGAATTAATTGAATTACCTG
1 AATTACCCGAATTAACTGAATTAACTG
*
37069722 AATTACCCGAATTAACCGAATT
1 AATTACCCGAATTAACTGAATT
37069744 GAATCACTAC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (27 bp):
AATTACCCGAATTAACTGAATTAACTG
Found at i:37069880 original size:18 final size:18
Alignment explanation
Indices: 37069840--37069883 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
37069830 AATTTTTATG
**
37069840 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
37069858 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
37069876 CTTGGGTT
1 ATTGGGTT
37069884 TGGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:37074063 original size:42 final size:43
Alignment explanation
Indices: 37074016--37074124 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 43
37074006 TTTCGAGGTG
*
37074016 TGATTTCATGTAAGACCATGTCTGGGACATTGGCATCG-TATA
1 TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGATATA
* *
37074058 TGATTTCATGTAAGACCCTGTCTGGGATAGTGGCATCGATATA
1 TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGATATA
* ** * *
37074101 TTATAACATGTAACACCATATCTG
1 TGATTTCATGTAAGACCATGTCTG
37074125 AGATATGGCA
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
42 35 0.61
43 22 0.39
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGGGACAGTGGCATCGATATA
Found at i:37074853 original size:48 final size:49
Alignment explanation
Indices: 37074677--37074837 Score: 220
Period size: 48 Copynumber: 3.3 Consensus size: 49
37074667 AATGATAAGA
* * *
37074677 TGCTGTCCATTTTT-TAGCATATTAATGCTGTCCAAATTGATGGTTAAT
1 TGCTGTCTATTTTTGTAGTATATTAATGCTGTCCAAATTGATGCTTAAT
37074725 TGCTGTCTATTTTTG-AGTATATTAATGCTGTCCAAATTGATGCTTAAT
1 TGCTGTCTATTTTTGTAGTATATTAATGCTGTCCAAATTGATGCTTAAT
* * * * *
37074773 TGCTGCCCATTTTT-TAGTATATTAATGTTGTCCAAATTGGTGCTTAAA
1 TGCTGTCTATTTTTGTAGTATATTAATGCTGTCCAAATTGATGCTTAAT
*
37074821 TGCTATCTATTTTTGTA
1 TGCTGTCTATTTTTGTA
37074838 CAAATCAATG
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
48 97 0.98
49 2 0.02
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.46
Consensus pattern (49 bp):
TGCTGTCTATTTTTGTAGTATATTAATGCTGTCCAAATTGATGCTTAAT
Found at i:37077588 original size:21 final size:21
Alignment explanation
Indices: 37077573--37077618 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
37077563 AATAATTACT
37077573 TATATAAATTAAATAAATTAAAA
1 TATAT-AATTAAAT-AATTAAAA
37077596 TATATAATTAAATAATTAAAA
1 TATATAATTAAATAATTAAAA
37077617 TA
1 TA
37077619 ATTAAATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.43
22 8 0.35
23 5 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (21 bp):
TATATAATTAAATAATTAAAA
Found at i:37089133 original size:28 final size:27
Alignment explanation
Indices: 37089101--37089187 Score: 88
Period size: 28 Copynumber: 3.1 Consensus size: 27
37089091 TATATAGTTC
37089101 TTCTATAATTTTATAAATTTTTTTATTT
1 TTCTATAATTTT-TAAATTTTTTTATTT
* *
37089129 TTCTATAATTTTTACCAATTTTTTGA-AT
1 TTCTATAATTTTTA--AATTTTTTTATTT
37089157 TTCTATCATATTTTT-AATATTTTTTATTT
1 TTCTAT-A-ATTTTTAAAT-TTTTTTATTT
37089186 TT
1 TT
37089188 AAGAATATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 5 0.10
28 25 0.51
29 13 0.27
30 6 0.12
ACGTcount: A:0.26, C:0.07, G:0.01, T:0.66
Consensus pattern (27 bp):
TTCTATAATTTTTAAATTTTTTTATTT
Found at i:37091972 original size:17 final size:17
Alignment explanation
Indices: 37091946--37091983 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
37091936 TCATATTTAA
* *
37091946 TTTT-TTTAAAATTAGT
1 TTTTATTTAAAAATAAT
37091962 TTTTATTTAAAAATAAT
1 TTTTATTTAAAAATAAT
37091979 TTTTA
1 TTTTA
37091984 GAAAATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTTATTTAAAAATAAT
Found at i:37095472 original size:10 final size:10
Alignment explanation
Indices: 37095448--37095526 Score: 61
Period size: 10 Copynumber: 7.6 Consensus size: 10
37095438 TTATAATCAA
37095448 ATAATTTTTTCT
1 ATAA-TTTTT-T
37095460 ATAATTTTTT
1 ATAATTTTTT
* *
37095470 ATAATTATTA
1 ATAATTTTTT
**
37095480 ATAAATTTTAC
1 AT-AATTTTTT
*
37095491 ATAATTTTAT
1 ATAATTTTTT
37095501 ATAATTTTTT
1 ATAATTTTTT
37095511 -TATATTTTTT
1 ATA-ATTTTTT
*
37095521 AAAATT
1 ATAATT
37095527 ACCTAAAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
9 2 0.04
10 37 0.66
11 13 0.23
12 4 0.07
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:37095488 original size:21 final size:21
Alignment explanation
Indices: 37095448--37095526 Score: 65
Period size: 21 Copynumber: 3.8 Consensus size: 21
37095438 TTATAATCAA
* *
37095448 ATAATTTTTTCTATAATTTTTT
1 ATAATTTTATATA-AATTTTTT
**
37095470 ATAATTATTA-ATAAATTTTAC
1 ATAATT-TTATATAAATTTTTT
*
37095491 ATAATTTTATATAATTTTTTT
1 ATAATTTTATATAAATTTTTT
*
37095512 AT-ATTTTTTA-AAATT
1 ATAATTTTATATAAATT
37095527 ACCTAAAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
19 4 0.09
20 10 0.22
21 22 0.48
22 8 0.17
23 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (21 bp):
ATAATTTTATATAAATTTTTT
Found at i:37095498 original size:31 final size:30
Alignment explanation
Indices: 37095422--37095506 Score: 91
Period size: 30 Copynumber: 2.8 Consensus size: 30
37095412 AATCGAAAAC
* * *
37095422 ATTTTTCTATAAATTTTTATAATCAAATAA
1 ATTTTACTATAATTTTTTATAATTAAATAA
* *
37095452 TTTTTTCTATAATTTTTTATAATTATTAATAA
1 ATTTTACTATAATTTTTTATAATTA--AATAA
*
37095484 ATTTTAC-ATAATTTTATATAATT
1 ATTTTACTATAATTTTTTATAATT
37095507 TTTTTATATT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
30 22 0.47
31 15 0.32
32 10 0.21
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (30 bp):
ATTTTACTATAATTTTTTATAATTAAATAA
Found at i:37100604 original size:2 final size:2
Alignment explanation
Indices: 37100597--37100627 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
37100587 AGGACTCATA
37100597 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
37100628 TGCCTAAGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:37107330 original size:14 final size:14
Alignment explanation
Indices: 37107311--37107346 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
37107301 CGCTTTACTA
37107311 AAGCGCGTCCACGT
1 AAGCGCGTCCACGT
37107325 AAGCGCGTCCACGT
1 AAGCGCGTCCACGT
37107339 AAGCGCGT
1 AAGCGCGT
37107347 TTTTTTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.22, C:0.33, G:0.31, T:0.14
Consensus pattern (14 bp):
AAGCGCGTCCACGT
Found at i:37110606 original size:16 final size:17
Alignment explanation
Indices: 37110536--37110612 Score: 61
Period size: 16 Copynumber: 4.5 Consensus size: 17
37110526 TCAGTATATG
*
37110536 GCTCGCACACAACATAGA
1 GCTCGCACAC-ATATAGA
*
37110554 GCTCGCACATGTATATAG-
1 GCTCGCACA--CATATAGA
* *
37110572 GCTCGCATA-ATACAGA
1 GCTCGCACACATATAGA
37110588 GCTCGCACACATATA-A
1 GCTCGCACACATATAGA
*
37110604 GCTCACACA
1 GCTCGCACA
37110613 ATTGTAAAGG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
15 5 0.10
16 17 0.35
17 4 0.08
18 17 0.35
19 5 0.10
ACGTcount: A:0.35, C:0.30, G:0.17, T:0.18
Consensus pattern (17 bp):
GCTCGCACACATATAGA
Found at i:37116468 original size:12 final size:12
Alignment explanation
Indices: 37116451--37116484 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
37116441 AATAGATAAC
37116451 AATAATAATAGT
1 AATAATAATAGT
*
37116463 AGTAATAATAGT
1 AATAATAATAGT
37116475 AATAATAATA
1 AATAATAATA
37116485 TTAAATAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (12 bp):
AATAATAATAGT
Found at i:37141166 original size:59 final size:58
Alignment explanation
Indices: 37140986--37141269 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
37140976 ATGATAAATT
* ** * *
37140986 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
37141045 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
37141106 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
37141165 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
37141227 T
58 C
*
37141228 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
37141270 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Done.