Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 114 of 313
Found at i:37141193 original size:120 final size:122
Alignment explanation
Indices: 37140979--37141269 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
37140969 TAGTATGATG
* **
37140979 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
37141044 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
37141100 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
37141163 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
37141221 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
37141270 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:37141248 original size:18 final size:19
Alignment explanation
Indices: 37141213--37141249 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
37141203 ATTATTAAGA
37141213 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
37141232 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
37141250 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:37141479 original size:44 final size:45
Alignment explanation
Indices: 37141414--37141504 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
37141404 ACCTCTATTC
* * *
37141414 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
37141458 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
37141503 CA
1 CA
37141505 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:37141506 original size:16 final size:16
Alignment explanation
Indices: 37141485--37141553 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
37141475 GATTAGCTAT
37141485 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37141501 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
37141518 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
37141534 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37141550 TACA
1 TACA
37141554 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:37141530 original size:33 final size:32
Alignment explanation
Indices: 37141485--37141553 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
37141475 GATTAGCTAT
37141485 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
37141518 TACACCTTTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
37141550 TACA
1 TACA
37141554 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:37143648 original size:26 final size:26
Alignment explanation
Indices: 37143618--37143669 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
37143608 AGAAAGACTA
*
37143618 AGAGAAAACCTAGAGAAAACTAAGGC
1 AGAGAAAACCTAGAGAAAACAAAGGC
37143644 AGAGAAAACCTAGAGAAAACAAAGGC
1 AGAGAAAACCTAGAGAAAACAAAGGC
37143670 TAAAACTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.56, C:0.15, G:0.23, T:0.06
Consensus pattern (26 bp):
AGAGAAAACCTAGAGAAAACAAAGGC
Found at i:37146658 original size:19 final size:19
Alignment explanation
Indices: 37146634--37146690 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
37146624 TAAATATATA
37146634 TTAATTTTTATA-ATATTT
1 TTAATTTTTATATATATTT
37146652 TTCAATTTTTATATACTATTT
1 TT-AATTTTTATATA-TATTT
*
37146673 TTACTTTTTATATATATT
1 TTAATTTTTATATATATT
37146691 ATATATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 2 0.06
19 14 0.40
20 12 0.34
21 7 0.20
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (19 bp):
TTAATTTTTATATATATTT
Found at i:37146673 original size:20 final size:19
Alignment explanation
Indices: 37146622--37146690 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
37146612 AAAATTGAAA
* *
37146622 TTTAAATATATATT-AATT
1 TTTATATATATTTTCAATT
37146640 TTTATA-ATATTTTTCAATT
1 TTTATATATA-TTTTCAATT
* *
37146659 TTTATATACTATTTTTACTT
1 TTTATATA-TATTTTCAATT
37146679 TTTATATATATT
1 TTTATATATATT
37146691 ATATATTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
17 3 0.07
18 8 0.19
19 14 0.33
20 16 0.37
21 2 0.05
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATATATATTTTCAATT
Found at i:37146700 original size:20 final size:20
Alignment explanation
Indices: 37146657--37146701 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
37146647 TATTTTTCAA
*
37146657 TTTTTATATACTATTTTTAC
1 TTTTTATATACTATTTATAC
37146677 TTTTTATATA-TATTATATA-
1 TTTTTATATACTATT-TATAC
37146696 TTTTTA
1 TTTTTA
37146702 CATTTTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTATATACTATTTATAC
Found at i:37153353 original size:16 final size:16
Alignment explanation
Indices: 37153307--37153353 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
37153297 GGGTAGAAAT
*
37153307 AAAATTAGAAAGATAG
1 AAAATTAAAAAGATAG
**
37153323 AAAATTAAAGGGATAGG
1 AAAATTAAAAAGATA-G
37153340 AAAA-TAAAAAGATA
1 AAAATTAAAAAGATA
37153354 TAGTATAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
16 20 0.80
17 5 0.20
ACGTcount: A:0.64, C:0.00, G:0.19, T:0.17
Consensus pattern (16 bp):
AAAATTAAAAAGATAG
Found at i:37154142 original size:31 final size:30
Alignment explanation
Indices: 37154093--37154151 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 30
37154083 GACTTTAATT
*
37154093 TTGAAATCTAAAGAATAAAGAGACTAAATTAC
1 TTGAAATCAAAAGAAT-AA-AGACTAAATTAC
*
37154125 TTGAAA-CAAAAGTATAAAGACTAAATT
1 TTGAAATCAAAAGAATAAAGACTAAATT
37154152 CTAAATTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.40
30 2 0.08
31 7 0.28
32 6 0.24
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.25
Consensus pattern (30 bp):
TTGAAATCAAAAGAATAAAGACTAAATTAC
Found at i:37156019 original size:24 final size:24
Alignment explanation
Indices: 37155969--37156020 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
37155959 AATCAAAGTC
** *
37155969 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
* *
37155993 AAATATATTATACTCATAAATATT
1 AAATATATTATACTAATAAATACT
37156017 AAAT
1 AAAT
37156021 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:37161219 original size:29 final size:26
Alignment explanation
Indices: 37161178--37161234 Score: 60
Period size: 26 Copynumber: 2.1 Consensus size: 26
37161168 AAAATTTGTA
* *
37161178 TTAAAATGCTTAATTAACTTATTATTTTT
1 TTAAAAGGCTTAA--AA-TTATAATTTTT
*
37161207 TTAAAAGGGTTAAAATTATAATTTTT
1 TTAAAAGGCTTAAAATTATAATTTTT
37161233 TT
1 TT
37161235 CCATTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 12 0.48
27 2 0.08
29 11 0.44
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.53
Consensus pattern (26 bp):
TTAAAAGGCTTAAAATTATAATTTTT
Found at i:37171774 original size:20 final size:21
Alignment explanation
Indices: 37171730--37171776 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
37171720 TATTGGTTAT
*
37171730 ATTTTA-ATATTTAAAATATA
1 ATTTTATATATTCAAAATATA
*
37171750 A-TTTATATATTCAAATTA-A
1 ATTTTATATATTCAAAATATA
37171769 ATTTTATA
1 ATTTTATA
37171777 AATAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
ATTTTATATATTCAAAATATA
Found at i:37172309 original size:21 final size:20
Alignment explanation
Indices: 37172269--37172308 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
37172259 TTTATATTTG
37172269 TTTTATAAATTATAAATATA
1 TTTTATAAATTATAAATATA
37172289 TTTTATATAATT-TAAA-ATA
1 TTTTATA-AATTATAAATATA
37172308 T
1 T
37172309 AAAATTAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 11 0.58
21 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTATAAATTATAAATATA
Found at i:37172493 original size:94 final size:94
Alignment explanation
Indices: 37172390--37172579 Score: 371
Period size: 94 Copynumber: 2.0 Consensus size: 94
37172380 AACCCAACAC
37172390 TTCTTTTATTATTTATTAATTTTTTATTTTAAAATAAATAAAATTAAGTTTAAAGTTGGTAAACT
1 TTCTTTTATTATTTATTAATTTTTTATTTTAAAATAAATAAAATTAAGTTTAAAGTTGGTAAACT
37172455 TTAAATAATGTACTAGTTGGTGCACAATA
66 TTAAATAATGTACTAGTTGGTGCACAATA
*
37172484 TTCTTTTATTATTTATTAATTTTTTATTTTAAAATAAATAAAATTAAGTTTAAAGTTGGTAAATT
1 TTCTTTTATTATTTATTAATTTTTTATTTTAAAATAAATAAAATTAAGTTTAAAGTTGGTAAACT
37172549 TTAAATAATGTACTAGTTGGTGCACAATA
66 TTAAATAATGTACTAGTTGGTGCACAATA
37172578 TT
1 TT
37172580 TTAACTGGTG
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 95 1.00
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (94 bp):
TTCTTTTATTATTTATTAATTTTTTATTTTAAAATAAATAAAATTAAGTTTAAAGTTGGTAAACT
TTAAATAATGTACTAGTTGGTGCACAATA
Found at i:37173754 original size:14 final size:14
Alignment explanation
Indices: 37173735--37173837 Score: 71
Period size: 14 Copynumber: 7.6 Consensus size: 14
37173725 TTAGTTTAAA
37173735 ATATATATTATATT
1 ATATATATTATATT
*
37173749 ATATATACGTA-ATT
1 ATATATA-TTATATT
*
37173763 A-ATGATTATGT-TTTT
1 ATAT-A-TAT-TATATT
37173778 ATATTATATTATTATT
1 ATA-TATATTA-TATT
37173794 A-ATATATTATATT
1 ATATATATTATATT
37173807 ATAT-T-TTATA-T
1 ATATATATTATATT
37173818 ATATATA-TATA-T
1 ATATATATTATATT
37173830 ATATATAT
1 ATATATAT
37173838 AACAAAAGAA
Statistics
Matches: 72, Mismatches: 4, Indels: 27
0.70 0.04 0.26
Matches are distributed among these distances:
11 5 0.07
12 18 0.25
13 8 0.11
14 22 0.31
15 12 0.17
16 6 0.08
17 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (14 bp):
ATATATATTATATT
Found at i:37173801 original size:19 final size:21
Alignment explanation
Indices: 37173735--37173838 Score: 84
Period size: 19 Copynumber: 5.3 Consensus size: 21
37173725 TTAGTTTAAA
37173735 ATATATATTATATTATATA-T
1 ATATATATTATATTATATATT
** *
37173755 ACGTA-ATTAATGATTATGT-TT
1 ATATATATT-AT-ATTATATATT
37173776 -T-TATATTATATTAT-TATT
1 ATATATATTATATTATATATT
*
37173794 A-ATATATTATATTATATTTT
1 ATATATATTATATTATATATT
37173814 ATATATA-TATA-TATATA-T
1 ATATATATTATATTATATATT
37173832 ATATATA
1 ATATATA
37173839 ACAAAAGAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
17 1 0.01
18 15 0.22
19 25 0.36
20 16 0.23
21 12 0.17
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (21 bp):
ATATATATTATATTATATATT
Found at i:37173811 original size:10 final size:10
Alignment explanation
Indices: 37173738--37173837 Score: 61
Period size: 10 Copynumber: 10.0 Consensus size: 10
37173728 GTTTAAAATA
37173738 TATATTATAT
1 TATATTATAT
*
37173748 TATA-TATACG
1 TATATTATA-T
37173758 TA-ATTAATGAT
1 TATATT-AT-AT
*
37173769 TATGTT-T-T
1 TATATTATAT
37173777 TATATTATAT
1 TATATTATAT
37173787 TATTATTA-A-
1 TA-TATTATAT
37173796 TATATTATAT
1 TATATTATAT
*
37173806 TATATTTTA-
1 TATATTATAT
37173815 TATATATATAT
1 TATAT-TATAT
37173826 ATATATATATAT
1 -TATAT-TATAT
37173838 AACAAAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 24
0.70 0.06 0.24
Matches are distributed among these distances:
8 11 0.15
9 14 0.20
10 23 0.32
11 9 0.13
12 14 0.20
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (10 bp):
TATATTATAT
Found at i:37173818 original size:2 final size:2
Alignment explanation
Indices: 37173777--37173838 Score: 59
Period size: 2 Copynumber: 35.0 Consensus size: 2
37173767 ATTATGTTTT
37173777 TA TA T- TA TA T- TA T- TA T- TA -A TA TA T- TA TA T- TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
37173811 TT TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37173839 ACAAAAGAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 16
0.75 0.01 0.24
Matches are distributed among these distances:
1 8 0.16
2 43 0.84
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:37173838 original size:39 final size:41
Alignment explanation
Indices: 37173735--37173838 Score: 98
Period size: 39 Copynumber: 2.6 Consensus size: 41
37173725 TTAGTTTAAA
*
37173735 ATATATAT-TATAT-TATATATACGTAATTAATGATTATGTTTT
1 ATATATATATATATATATATATA--T-ATTAATGATTATATTTT
37173777 -TATAT-TATAT-TAT-TATTAATATATT-AT-ATTATATTTT
1 ATATATATATATATATATA-T-ATATATTAATGATTATATTTT
37173814 ATATATATATATATATATATATATA
1 ATATATATATATATATATATATATA
37173839 ACAAAAGAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 19
0.73 0.01 0.26
Matches are distributed among these distances:
37 9 0.17
38 7 0.13
39 13 0.25
40 9 0.17
41 12 0.23
42 3 0.06
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (41 bp):
ATATATATATATATATATATATATATTAATGATTATATTTT
Found at i:37174701 original size:27 final size:30
Alignment explanation
Indices: 37174662--37174718 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 30
37174652 AAATAAGGTG
*
37174662 AATATCGATATTGAATTAAA-TGAATTAAA
1 AATATCGATATTGAATAAAAGTGAATTAAA
37174691 AATAT-GA-ATTGAATAAAAGTGAATTAAA
1 AATATCGATATTGAATAAAAGTGAATTAAA
37174719 TTATGATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.38
28 11 0.42
29 5 0.19
ACGTcount: A:0.54, C:0.02, G:0.12, T:0.32
Consensus pattern (30 bp):
AATATCGATATTGAATAAAAGTGAATTAAA
Found at i:37175042 original size:41 final size:37
Alignment explanation
Indices: 37174994--37175093 Score: 101
Period size: 37 Copynumber: 2.6 Consensus size: 37
37174984 TCGACCTTGA
37174994 GTCGATGAGACACTGGGTGTCATACTGTTACTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA-AC--TTACTTCGGATAG
* ** ** * *
37175034 ATTCGATGAGGTACTGGGTACCAACTTACTTCGGCTTG
1 -GTCGATGAGACACTGGGTGTCAACTTACTTCGGATAG
37175072 GTCGATGAGACACTGGGTGTCA
1 GTCGATGAGACACTGGGTGTCA
37175094 CTTTATTGCT
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
37 17 0.36
38 11 0.23
40 2 0.04
41 17 0.36
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (37 bp):
GTCGATGAGACACTGGGTGTCAACTTACTTCGGATAG
Found at i:37175087 original size:37 final size:40
Alignment explanation
Indices: 37174980--37175089 Score: 109
Period size: 41 Copynumber: 2.8 Consensus size: 40
37174970 TGTTCAGGGA
* **
37174980 TACTTCGACCTTGAGTCGATGAGACACTGGGTGTCATACTGT
1 TACTTCG-GCTTGAGTCGATGAGACACTGGGTACCATAC-GT
* * * **
37175022 TACTTCGGATAGATTCGATGAGGTACTGGGTACCA-AC-T
1 TACTTCGGCTTGAGTCGATGAGACACTGGGTACCATACGT
37175060 TACTTCGGCTTG-GTCGATGAGACACTGGGT
1 TACTTCGGCTTGAGTCGATGAGACACTGGGT
37175090 GTCACTTTAT
Statistics
Matches: 55, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
37 15 0.27
38 11 0.20
40 2 0.04
41 20 0.36
42 7 0.13
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (40 bp):
TACTTCGGCTTGAGTCGATGAGACACTGGGTACCATACGT
Found at i:37178489 original size:18 final size:18
Alignment explanation
Indices: 37178466--37178500 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37178456 TTTAACCTAT
37178466 TTGTTCATATGATTAATA
1 TTGTTCATATGATTAATA
* *
37178484 TTGTTCGTTTGATTAAT
1 TTGTTCATATGATTAAT
37178501 TTAAGACTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (18 bp):
TTGTTCATATGATTAATA
Found at i:37188411 original size:205 final size:205
Alignment explanation
Indices: 37188059--37188468 Score: 820
Period size: 205 Copynumber: 2.0 Consensus size: 205
37188049 ATGAATGAGT
37188059 TTAATTAATCAAAAGTTATACTATTTGATTTTTTGAAAAAGAATTATAACGATTTAAATAATATT
1 TTAATTAATCAAAAGTTATACTATTTGATTTTTTGAAAAAGAATTATAACGATTTAAATAATATT
37188124 ATTTGAATAGTTATAATATTAAATAAATAATTATGTGTTTATTTTAAAGACATTATTATTCTGAA
66 ATTTGAATAGTTATAATATTAAATAAATAATTATGTGTTTATTTTAAAGACATTATTATTCTGAA
37188189 AGACACCTATTGATGAAAGAAGAGACATGAAAATTCCTATAAATAGGAATGAGATTTCATTTGGA
131 AGACACCTATTGATGAAAGAAGAGACATGAAAATTCCTATAAATAGGAATGAGATTTCATTTGGA
37188254 AATCACACCA
196 AATCACACCA
37188264 TTAATTAATCAAAAGTTATACTATTTGATTTTTTGAAAAAGAATTATAACGATTTAAATAATATT
1 TTAATTAATCAAAAGTTATACTATTTGATTTTTTGAAAAAGAATTATAACGATTTAAATAATATT
37188329 ATTTGAATAGTTATAATATTAAATAAATAATTATGTGTTTATTTTAAAGACATTATTATTCTGAA
66 ATTTGAATAGTTATAATATTAAATAAATAATTATGTGTTTATTTTAAAGACATTATTATTCTGAA
37188394 AGACACCTATTGATGAAAGAAGAGACATGAAAATTCCTATAAATAGGAATGAGATTTCATTTGGA
131 AGACACCTATTGATGAAAGAAGAGACATGAAAATTCCTATAAATAGGAATGAGATTTCATTTGGA
37188459 AATCACACCA
196 AATCACACCA
37188469 ACAAATTCTA
Statistics
Matches: 205, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
205 205 1.00
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (205 bp):
TTAATTAATCAAAAGTTATACTATTTGATTTTTTGAAAAAGAATTATAACGATTTAAATAATATT
ATTTGAATAGTTATAATATTAAATAAATAATTATGTGTTTATTTTAAAGACATTATTATTCTGAA
AGACACCTATTGATGAAAGAAGAGACATGAAAATTCCTATAAATAGGAATGAGATTTCATTTGGA
AATCACACCA
Found at i:37193229 original size:23 final size:23
Alignment explanation
Indices: 37193203--37193348 Score: 97
Period size: 23 Copynumber: 6.4 Consensus size: 23
37193193 AAATATTTTC
*
37193203 AATCCTTCAAGGGATCATTTCCT
1 AATCCCTCAAGGGATCATTTCCT
* **
37193226 AATCCCTC-GGGTGAT-AAATCCGT
1 AATCCCTCAAGG-GATCATTTCC-T
37193249 AATCCCTC-AGGAGATCATTTCCT
1 AATCCCTCAAGG-GATCATTTCCT
* * *
37193272 AATCCTTTAAGGGGTCA-TTCCTT
1 AATCCCTCAAGGGATCATTTCC-T
* * *
37193295 ATTCCTTCATA--GATAATTTCCT
1 AATCCCTCA-AGGGATCATTTCCT
* *
37193317 AATCCCTCGAGGGATAATTTCCT
1 AATCCCTCAAGGGATCATTTCCT
37193340 AATCCCTCA
1 AATCCCTCA
37193349 GGAGATAATA
Statistics
Matches: 95, Mismatches: 19, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
21 1 0.01
22 20 0.21
23 66 0.69
24 8 0.08
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.34
Consensus pattern (23 bp):
AATCCCTCAAGGGATCATTTCCT
Found at i:37193355 original size:23 final size:23
Alignment explanation
Indices: 37193219--37193357 Score: 108
Period size: 23 Copynumber: 6.1 Consensus size: 23
37193209 TCAAGGGATC
* *
37193219 ATTTCCTAATCCCTCGGGTGATA
1 ATTTCCTAATCCCTCAGGAGATA
* *
37193242 A-ATCCGTAATCCCTCAGGAGATC
1 ATTTCC-TAATCCCTCAGGAGATA
* * * *
37193265 ATTTCCTAATCCTTTAAGG-GGTC
1 ATTTCCTAATCC-CTCAGGAGATA
* * *
37193288 A-TTCCTTATTCCTTCA-TAGATA
1 ATTTCC-TAATCCCTCAGGAGATA
37193310 ATTTCCTAATCCCTCGAGG-GATA
1 ATTTCCTAATCCCTC-AGGAGATA
37193333 ATTTCCTAATCCCTCAGGAGATA
1 ATTTCCTAATCCCTCAGGAGATA
37193356 AT
1 AT
37193358 ATCTTGTTCC
Statistics
Matches: 91, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
22 23 0.25
23 61 0.67
24 7 0.08
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (23 bp):
ATTTCCTAATCCCTCAGGAGATA
Found at i:37193357 original size:46 final size:46
Alignment explanation
Indices: 37193219--37193357 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 46
37193209 TCAAGGGATC
* *
37193219 ATTTCCTAATCCCTCG-GGTGATAAATCCGTAATCCCTCAGGAGATC
1 ATTTCCTAATCCCTCGAGG-GATAATTCCGTAATCCCTCAGGAGATA
* ** * * * * * *
37193265 ATTTCCTAATCCTTTAAGGGGTCATTCCTTATTCCTTCA-TAGATA
1 ATTTCCTAATCCCTCGAGGGATAATTCCGTAATCCCTCAGGAGATA
37193310 ATTTCCTAATCCCTCGAGGGATAATTTCC-TAATCCCTCAGGAGATA
1 ATTTCCTAATCCCTCGAGGGATAA-TTCCGTAATCCCTCAGGAGATA
37193356 AT
1 AT
37193358 ATCTTGTTCC
Statistics
Matches: 71, Mismatches: 19, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
45 31 0.44
46 38 0.54
47 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (46 bp):
ATTTCCTAATCCCTCGAGGGATAATTCCGTAATCCCTCAGGAGATA
Found at i:37195839 original size:20 final size:19
Alignment explanation
Indices: 37195811--37195861 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
37195801 ATTTTTTATG
*
37195811 ATATAAAAAATAAACATTTT
1 ATATTAAAAATAAA-ATTTT
37195831 ATATT-AAAATGAAAATTTT
1 ATATTAAAAAT-AAAATTTT
*
37195850 AAATTAAAAATA
1 ATATTAAAAATA
37195862 TTAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (19 bp):
ATATTAAAAATAAAATTTT
Found at i:37197149 original size:28 final size:28
Alignment explanation
Indices: 37197091--37197152 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
37197081 TAGGGGCCTG
**
37197091 ATCAAATTAATCCTCTACTATTAAATGA
1 ATCAAATTAATCCTCTACTATTAAAACA
*
37197119 ATCAATTTAATCCTCGTACTA-TAAAACA
1 ATCAAATTAATCCTC-TACTATTAAAACA
37197147 ATCAAA
1 ATCAAA
37197153 CAATGCCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.45, C:0.19, G:0.03, T:0.32
Consensus pattern (28 bp):
ATCAAATTAATCCTCTACTATTAAAACA
Found at i:37199925 original size:9 final size:9
Alignment explanation
Indices: 37199911--37199940 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
37199901 AGTTTACTAC
37199911 TTTTCTTCT
1 TTTTCTTCT
37199920 TTTTCTTCT
1 TTTTCTTCT
*
37199929 TCTTCTTCT
1 TTTTCTTCT
37199938 TTT
1 TTT
37199941 CTTGCTCCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTCTTCT
Found at i:37199954 original size:3 final size:3
Alignment explanation
Indices: 37199943--37199986 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
37199933 CTTCTTTTCT
* *
37199943 TGC TCC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
37199987 TGTTTTCTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.32, G:0.32, T:0.36
Consensus pattern (3 bp):
TGC
Found at i:37200367 original size:5 final size:5
Alignment explanation
Indices: 37200362--37200392 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
37200352 CTATTGTTTT
*
37200362 GGTTT GGTTG GGTTG GGTTG GGTTG GGTTG G
1 GGTTG GGTTG GGTTG GGTTG GGTTG GGTTG G
37200393 TTTGTTCTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.58, T:0.42
Consensus pattern (5 bp):
GGTTG
Found at i:37201326 original size:27 final size:27
Alignment explanation
Indices: 37201288--37201339 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
37201278 CTTAGGGAAG
37201288 AGGCAGCACTGGTGGAGGAGCTGGCGC
1 AGGCAGCACTGGTGGAGGAGCTGGCGC
*
37201315 AGGCGGCACTGGTGGAGGAGCTGGC
1 AGGCAGCACTGGTGGAGGAGCTGGC
37201340 AGAAGCGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.17, C:0.21, G:0.50, T:0.12
Consensus pattern (27 bp):
AGGCAGCACTGGTGGAGGAGCTGGCGC
Found at i:37201347 original size:27 final size:27
Alignment explanation
Indices: 37201293--37201349 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
37201283 GGAAGAGGCA
*
37201293 GCACTGGTGGAGGAGCTGGCGCAGGCG
1 GCACTGGTGGAGGAGCTGGCGCAAGCG
37201320 GCACTGGTGGAGGAGCTGGCAG-AAGCG
1 GCACTGGTGGAGGAGCTGGC-GCAAGCG
37201347 GCA
1 GCA
37201350 TCACAGGCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 27 0.96
28 1 0.04
ACGTcount: A:0.19, C:0.21, G:0.49, T:0.11
Consensus pattern (27 bp):
GCACTGGTGGAGGAGCTGGCGCAAGCG
Found at i:37201545 original size:16 final size:16
Alignment explanation
Indices: 37201524--37201556 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
37201514 AAAGAAAAAA
37201524 AGAGAA-GAGAATAGAG
1 AGAGAACGAGAA-AGAG
37201540 AGAGAACGAGAAAGAG
1 AGAGAACGAGAAAGAG
37201556 A
1 A
37201557 AGGAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.58, C:0.03, G:0.36, T:0.03
Consensus pattern (16 bp):
AGAGAACGAGAAAGAG
Found at i:37214618 original size:14 final size:13
Alignment explanation
Indices: 37214591--37214624 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
37214581 GACCTGACAG
37214591 TATTAAAATTTTA
1 TATTAAAATTTTA
37214604 TATTAAAATTTT-
1 TATTAAAATTTTA
37214616 TATATAAAA
1 TAT-TAAAA
37214625 ACAAATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.15
13 17 0.85
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATTAAAATTTTA
Found at i:37214703 original size:4 final size:4
Alignment explanation
Indices: 37214694--37214726 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
37214684 AATAAGTTGA
37214694 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
37214727 TTTATGCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:37216413 original size:100 final size:103
Alignment explanation
Indices: 37216237--37216483 Score: 347
Period size: 105 Copynumber: 2.4 Consensus size: 103
37216227 TTTTTTTGGT
** *
37216237 CATTGACAGGCCAGCACAAAATTTTTTTTTGGTTTACTTTTTTTGTATACTGATATCTGATTCTG
1 CATTGACAGGCCAGCACCCAA-TTTTTTTT--TTTACTTTTTTCGTATACTGATATCTGATTCTG
37216302 ACACG-AAAAAAAA-A-TTTTAAATTGTACTGGGTGCCGAC
63 ACACGAAAAAAAAATATTTTTAAATTGTACTGGGTGCCGAC
*
37216340 CATTGACAGGCCAGAACCCAATTTTTTTTTTTACTTTTTTCGTATACTGATATCTGATTCTGACA
1 CATTGACAGGCCAGCACCCAATTTTTTTTTTTACTTTTTTCGTATACTGATATCTGATTCTGACA
*
37216405 CGAAAAAAAAATATTTTTTTAAATTGTACTGGGTGCCGGC
66 CGAAAAAAAAATA--TTTTTAAATTGTACTGGGTGCCGAC
* ** *
37216445 CATTGATAGGCCAGCACCCAAAATTTTTTTTTCCTTTTT
1 CATTGACAGGCCAGCACCCAATTTTTTTTTTTACTTTTT
37216484 CTTTTTTTTC
Statistics
Matches: 129, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
100 37 0.29
101 8 0.06
102 9 0.07
103 18 0.14
105 57 0.44
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (103 bp):
CATTGACAGGCCAGCACCCAATTTTTTTTTTTACTTTTTTCGTATACTGATATCTGATTCTGACA
CGAAAAAAAAATATTTTTAAATTGTACTGGGTGCCGAC
Found at i:37219767 original size:28 final size:29
Alignment explanation
Indices: 37219721--37219789 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 29
37219711 TAAAAATTAC
37219721 AAAATAATTTAAAATAAATTTTAAAATTT
1 AAAATAATTTAAAATAAATTTTAAAATTT
*
37219750 AAAAT-ATTTATAAA-AAATTTTAAATTTT
1 AAAATAATTTA-AAATAAATTTTAAAATTT
37219778 AATTAATAATTT
1 AA--AATAATTT
37219790 GTGTTTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
28 20 0.57
29 8 0.23
30 3 0.09
31 4 0.11
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (29 bp):
AAAATAATTTAAAATAAATTTTAAAATTT
Found at i:37220520 original size:4 final size:4
Alignment explanation
Indices: 37220511--37220539 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
37220501 TCTATTCTGG
37220511 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
37220540 TATATTATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:37221992 original size:34 final size:32
Alignment explanation
Indices: 37221916--37221992 Score: 75
Period size: 34 Copynumber: 2.3 Consensus size: 32
37221906 GAACTCTAAG
* *
37221916 TATAAAATATAATATAATTTAATTTACTATTGT
1 TATAAAA-ATAATATAATTTAATTTACTACTAT
*
37221949 TAGTTAAAATAATTATAATTTAATTTTGAC-ACTAT
1 TA-TAAAAATAA-TATAATTTAA-TTT-ACTACTAT
37221984 TATAAAAAT
1 TATAAAAAT
37221993 GATTTTCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
33 6 0.17
34 20 0.56
35 8 0.22
36 2 0.06
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (32 bp):
TATAAAAATAATATAATTTAATTTACTACTAT
Found at i:37224598 original size:31 final size:31
Alignment explanation
Indices: 37224563--37224623 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
37224553 AACAACTTAG
*
37224563 TGACTTAAATAAAAAGTTTTGAA-TAGTTCAA
1 TGACTTAAATAAAAACTTTT-AAGTAGTTCAA
*
37224594 TGACTTAAATGAAAACTTTTAAGTAGTTCA
1 TGACTTAAATAAAAACTTTTAAGTAGTTCA
37224624 GTGATTACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 2 0.07
31 25 0.93
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTTAAGTAGTTCAA
Found at i:37230335 original size:12 final size:12
Alignment explanation
Indices: 37230305--37230337 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
37230295 TATATATTTT
37230305 AAAATT-ATATA
1 AAAATTAATATA
37230316 AAAA-TAATATA
1 AAAATTAATATA
37230327 AAAATTAATAT
1 AAAATTAATAT
37230338 TGGAGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:37233295 original size:5 final size:5
Alignment explanation
Indices: 37233287--37233314 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
37233277 TTCGGTTATG
37233287 ATTGC ATTGC ATTGC ATTGC ATTGC ATT
1 ATTGC ATTGC ATTGC ATTGC ATTGC ATT
37233315 TTTCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (5 bp):
ATTGC
Found at i:37236240 original size:29 final size:28
Alignment explanation
Indices: 37236198--37236312 Score: 115
Period size: 29 Copynumber: 4.0 Consensus size: 28
37236188 AAAAAATAAA
*
37236198 AAATTACATTTTAACCTCTAAACTTTTTG
1 AAATTACATTTTAACC-CTAAAATTTTTG
* * *
37236227 AAATTGCATTTTAACCCCT-AAATTTCATA
1 AAATTACATTTTAA-CCCTAAAATTT-TTG
*
37236256 AAATTACATTTTGACCCATAAAATTTTTG
1 AAATTACATTTTAACCC-TAAAATTTTTG
* *
37236285 AAATTACGTTTTGACCACTAAAATTTTT
1 AAATTACATTTTAACC-CTAAAATTTTT
37236313 CAAAATTTTG
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
28 8 0.11
29 55 0.76
30 9 0.12
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.42
Consensus pattern (28 bp):
AAATTACATTTTAACCCTAAAATTTTTG
Found at i:37236306 original size:58 final size:58
Alignment explanation
Indices: 37236197--37236306 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 58
37236187 CAAAAAATAA
* * *
37236197 AAAATTACATTTTAACCTCTAAACTTTTTGAAATTGCATTTTAACCCCTAAATTTCAT
1 AAAATTACATTTTAACCTCTAAAATTTTTGAAATTACATTTTAACCACTAAATTTCAT
* * *
37236255 AAAATTACATTTTGACC-CATAAAATTTTTGAAATTACGTTTTGACCACTAAA
1 AAAATTACATTTTAACCTC-TAAAATTTTTGAAATTACATTTTAACCACTAAA
37236307 ATTTTTCAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 1 0.02
58 44 0.98
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.39
Consensus pattern (58 bp):
AAAATTACATTTTAACCTCTAAAATTTTTGAAATTACATTTTAACCACTAAATTTCAT
Found at i:37236663 original size:3 final size:3
Alignment explanation
Indices: 37236655--37236725 Score: 58
Period size: 3 Copynumber: 23.7 Consensus size: 3
37236645 CCAAGGCGTA
37236655 AAG AAG AAG AAG AAG AAAG AAG AAG AAAG AAG AAGG AAG AA- AA- AAG
1 AAG AAG AAG AAG AAG -AAG AAG AAG -AAG AAG AA-G AAG AAG AAG AAG
* * * *
37236701 AAA AAG -AG AAA AAA AAG AAA AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
37236726 AAAAGAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
2 6 0.11
3 42 0.74
4 9 0.16
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:37236686 original size:17 final size:17
Alignment explanation
Indices: 37236654--37236732 Score: 96
Period size: 17 Copynumber: 4.9 Consensus size: 17
37236644 ACCAAGGCGT
*
37236654 AAAGAAG-AAGAAGAAG
1 AAAGAAGAAAAAAGAAG
*
37236670 AAAGAAGAAGAAAGAAG
1 AAAGAAGAAAAAAGAAG
*
37236687 AAGGAAGAAAAAAGAA-
1 AAAGAAGAAAAAAGAAG
37236703 AAAG-AGAAAAAA-AAG
1 AAAGAAGAAAAAAGAAG
37236718 AAA-AAGAAAAAAGAA
1 AAAGAAGAAAAAAGAA
37236733 AAATAATAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
14 2 0.04
15 19 0.35
16 12 0.22
17 21 0.39
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAGAAGAAAAAAGAAG
Found at i:37236733 original size:7 final size:7
Alignment explanation
Indices: 37236654--37236735 Score: 67
Period size: 7 Copynumber: 11.3 Consensus size: 7
37236644 ACCAAGGCGT
37236654 AAAGAAGA
1 AAAGAA-A
*
37236662 AGAAGAAG
1 A-AAGAAA
37236670 AAAG-AA
1 AAAGAAA
*
37236676 GAAGAAA
1 AAAGAAA
* *
37236683 GAAGAAG
1 AAAGAAA
*
37236690 GAAGAAA
1 AAAGAAA
37236697 AAAGAAA
1 AAAGAAA
37236704 AAGAGAAA
1 AA-AGAAA
*
37236712 AAAAAGAA
1 AAAGA-AA
37236720 AAAGAAA
1 AAAGAAA
37236727 AAAGAAA
1 AAAGAAA
37236734 AA
1 AA
37236736 TAATAAAGCA
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
6 4 0.06
7 38 0.61
8 15 0.24
9 5 0.08
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (7 bp):
AAAGAAA
Found at i:37236743 original size:13 final size:13
Alignment explanation
Indices: 37236658--37236735 Score: 66
Period size: 13 Copynumber: 5.6 Consensus size: 13
37236648 AGGCGTAAAG
* *
37236658 AAGAAGAAGAAGA
1 AAGAAAAAGAAAA
* *
37236671 AAGAAGAAGAAAG
1 AAGAAAAAGAAAA
*
37236684 AAGAAGGAAGAAAA
1 AAGAA-AAAGAAAA
37236698 AAGAAAAAGAGAAAAAA
1 AAG-AAAA-AG--AAAA
37236715 AAGAAAAAGAAAA
1 AAGAAAAAGAAAA
37236728 AAGAAAAA
1 AAGAAAAA
37236736 TAATAAAGCA
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
13 28 0.50
14 11 0.20
15 6 0.11
16 4 0.07
17 7 0.12
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGAAAAAGAAAA
Found at i:37236948 original size:26 final size:26
Alignment explanation
Indices: 37236897--37236949 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
37236887 AGGGGGCAGG
** *
37236897 CCAACAGCAGGCCCAATTCCAGCAGC
1 CCAACAGCAGGCCCAAGCCCAACAGC
*
37236923 CCAACAGCAGGCCCTAGCCCAACAGC
1 CCAACAGCAGGCCCAAGCCCAACAGC
37236949 C
1 C
37236950 AGCCTGTCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.45, G:0.19, T:0.06
Consensus pattern (26 bp):
CCAACAGCAGGCCCAAGCCCAACAGC
Found at i:37237040 original size:5 final size:5
Alignment explanation
Indices: 37237032--37237094 Score: 56
Period size: 5 Copynumber: 11.8 Consensus size: 5
37237022 GCCCAGCAGA
* *
37237032 AAAAG AAAAG AAAAAAG AAAA- AAAAG AAAAA AAAAG AAAAAAG AAGAG
1 AAAAG AAAAG --AAAAG AAAAG AAAAG AAAAG AAAAG --AAAAG AAAAG
37237080 AAAAAG AAAAG AAAA
1 -AAAAG AAAAG AAAA
37237095 ATTCAATTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
4 4 0.08
5 30 0.62
6 4 0.08
7 10 0.21
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:37237045 original size:11 final size:11
Alignment explanation
Indices: 37237032--37237095 Score: 71
Period size: 11 Copynumber: 5.9 Consensus size: 11
37237022 GCCCAGCAGA
37237032 AAAAG-AAAAG
1 AAAAGAAAAAG
*
37237042 AAAA-AAGAAAA
1 AAAAGAA-AAAG
37237053 AAAAGAAAAA-
1 AAAAGAAAAAG
37237063 AAAAGAAAAAAG
1 AAAAG-AAAAAG
*
37237075 AAGAGAAAAAG
1 AAAAGAAAAAG
37237086 AAAAGAAAAA
1 AAAAGAAAAA
37237096 TTCAATTTGT
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
10 10 0.22
11 30 0.65
12 6 0.13
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:37237046 original size:12 final size:12
Alignment explanation
Indices: 37237031--37237095 Score: 78
Period size: 12 Copynumber: 5.3 Consensus size: 12
37237021 AGCCCAGCAG
37237031 AAAAAGAAAAGA
1 AAAAAGAAAAGA
*
37237043 AAAAAGAAAAAAA
1 AAAAAG-AAAAGA
*
37237056 AGAAAAAAAAAGA
1 A-AAAAGAAAAGA
*
37237069 AAAAAGAAGAG-
1 AAAAAGAAAAGA
37237080 AAAAAGAAAAGA
1 AAAAAGAAAAGA
37237092 AAAA
1 AAAA
37237096 TTCAATTTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
11 10 0.23
12 18 0.41
13 12 0.27
14 4 0.09
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAGA
Found at i:37237482 original size:21 final size:21
Alignment explanation
Indices: 37237456--37237498 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
37237446 TCGGGTTTCG
*
37237456 AAATTTTTCGTGTCTTCAAAA
1 AAATTTATCGTGTCTTCAAAA
*
37237477 AAATTTATCGTGTTTTCAAAA
1 AAATTTATCGTGTCTTCAAAA
37237498 A
1 A
37237499 TAAAGTAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (21 bp):
AAATTTATCGTGTCTTCAAAA
Found at i:37237681 original size:17 final size:18
Alignment explanation
Indices: 37237653--37237690 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
37237643 TTTTTCATGT
37237653 TTTCAGAAAATTCCCGTG
1 TTTCAGAAAATTCCCGTG
*
37237671 TTTCA-AAAATTCTCGTG
1 TTTCAGAAAATTCCCGTG
37237688 TTT
1 TTT
37237691 TATAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.42
Consensus pattern (18 bp):
TTTCAGAAAATTCCCGTG
Found at i:37237690 original size:36 final size:35
Alignment explanation
Indices: 37237612--37237691 Score: 97
Period size: 35 Copynumber: 2.3 Consensus size: 35
37237602 AGAAAATTTT
* *
37237612 TCGTGTTTTCAAAAAATTCCAATTTTCAAAATTTT
1 TCGTGTTTTCAAAAAATTCCAATTTTCAAAAATTC
* * **
37237647 TCATGTTTTCAGAAAATTCCCGTGTTTCAAAAATTC
1 TCGTGTTTTCAAAAAATTCCAAT-TTTCAAAAATTC
37237683 TCGTGTTTT
1 TCGTGTTTT
37237692 ATAAATTTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
35 19 0.51
36 18 0.49
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (35 bp):
TCGTGTTTTCAAAAAATTCCAATTTTCAAAAATTC
Found at i:37237697 original size:17 final size:17
Alignment explanation
Indices: 37237659--37237764 Score: 81
Period size: 17 Copynumber: 6.1 Consensus size: 17
37237649 ATGTTTTCAG
* *
37237659 AAAATTCCCGTGTTTCA
1 AAAATTCTCGTGTTTTA
37237676 AAAATTCTCGTGTTTTA
1 AAAATTCTCGTGTTTTA
* * *
37237693 TAAATTTTCGTTTTTTA
1 AAAATTCTCGTGTTTTA
* **
37237710 GACAAAAT-T-GTGTTTCC
1 -A-AAATTCTCGTGTTTTA
37237727 AAAATTCTCGTGTTTTAAAA
1 AAAATTCTCGTGTTTT---A
37237747 AAAATTCTCGTGTTTTA
1 AAAATTCTCGTGTTTTA
37237764 A
1 A
37237765 TCGGATCACG
Statistics
Matches: 69, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
15 4 0.06
16 2 0.03
17 42 0.61
18 1 0.01
19 4 0.06
20 16 0.23
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.44
Consensus pattern (17 bp):
AAAATTCTCGTGTTTTA
Found at i:37237752 original size:20 final size:20
Alignment explanation
Indices: 37237727--37237764 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
37237717 TTGTGTTTCC
37237727 AAAATTCTCGTGTTTTAAAA
1 AAAATTCTCGTGTTTTAAAA
37237747 AAAATTCTCGTGTTTTAA
1 AAAATTCTCGTGTTTTAA
37237765 TCGGATCACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
AAAATTCTCGTGTTTTAAAA
Found at i:37240798 original size:442 final size:442
Alignment explanation
Indices: 37239974--37240854 Score: 1717
Period size: 442 Copynumber: 2.0 Consensus size: 442
37239964 GTTACAAGTC
37239974 CTGAAATAGATTTTGAGAAGGCTGTTTGTTTAGGAGAATTTGAAGCCGAGGAAGATGCTGAAGAT
1 CTGAAATAGATTTTGAGAAGGCTGTTTGTTTAGGAGAATTTGAAGCCGAGGAAGATGCTGAAGAT
37240039 TGTGTCTCGCCTCCTGACTTACTGAGAATGGTTAAACAAGAAAAGAAACAGATTCTACCCCATCA
66 TGTGTCTCGCCTCCTGACTTACTGAGAATGGTTAAACAAGAAAAGAAACAGATTCTACCCCATCA
37240104 AGAATCTGTTGAGACAGTGAACTTGGGAAATGAAGAAAAGAAACAAGAAGTGAAGATTGGAACTT
131 AGAATCTGTTGAGACAGTGAACTTGGGAAATGAAGAAAAGAAACAAGAAGTGAAGATTGGAACTT
* *
37240169 CCATTTTAGAAAACACAAGGCAAGATTTGATCGCCTTACTCCATGAGTATAAGGATGTGTTTGCC
196 CCATTTCAGAAAACACAAGGCAAGATTTGATCGCCTTACTCCATGAGTACAAGGATGTGTTTGCC
37240234 TGGTCTTATCAGGATATGCCAGGATTGAACACGGATATTGTGGTCCACAAGCTCCCACTAAAACC
261 TGGTCTTATCAGGATATGCCAGGATTGAACACGGATATTGTGGTCCACAAGCTCCCACTAAAACC
*
37240299 AGAATGCAAGCCCGTTCAGCAGAAGTTAAGAAGGATGAGACCCGAAATGCTGTTGAAGGTAAAAG
326 AGAATGCAAGCCCGTTCAGCAGAAGTTAAGAAGGATGAGACCCGAAATGCTGTTGAAGATAAAAG
37240364 AAGAAGTCAAGAAACAATTTGACGCTGGCTTCCTACAAGTCTCCAAGTAATG
391 AAGAAGTCAAGAAACAATTTGACGCTGGCTTCCTACAAGTCTCCAAGTAATG
37240416 CTGAAATAGATTTTGAGAAGGCTGTTTGTTTAGGAGAATTTGAAGCCGAGGAAGATGCTGAAGAT
1 CTGAAATAGATTTTGAGAAGGCTGTTTGTTTAGGAGAATTTGAAGCCGAGGAAGATGCTGAAGAT
37240481 TGTGTCTCGCCTCCTGACTTACTGAGAATGGTTAAACAAGAAAAGAAACAGATTCTACCCCATCA
66 TGTGTCTCGCCTCCTGACTTACTGAGAATGGTTAAACAAGAAAAGAAACAGATTCTACCCCATCA
37240546 AGAATCTGTTGAGACAGTGAACTTGGGAAATGAAGAAAAGAAACAAGAAGTGAAGATTGGAACTT
131 AGAATCTGTTGAGACAGTGAACTTGGGAAATGAAGAAAAGAAACAAGAAGTGAAGATTGGAACTT
*
37240611 CCATTTCAGAAAACACAAGGCAAGATTTGATCGCCTTGCTCCATGAGTACAAGGATGTGTTTGCC
196 CCATTTCAGAAAACACAAGGCAAGATTTGATCGCCTTACTCCATGAGTACAAGGATGTGTTTGCC
*
37240676 TGGTCTTATCAGGATATGCCAGGATTGAACACGGATATTGTGGTCCACAAGTTCCCACTAAAACC
261 TGGTCTTATCAGGATATGCCAGGATTGAACACGGATATTGTGGTCCACAAGCTCCCACTAAAACC
37240741 AGAATGCAAGCCCGTTCAGCAGAAGTTAAGAAGGATGAGACCCGAAATGCTGTTGAAGATAAAAG
326 AGAATGCAAGCCCGTTCAGCAGAAGTTAAGAAGGATGAGACCCGAAATGCTGTTGAAGATAAAAG
37240806 AAGAAGTCAAGAAACAATTTGACGCTGGCTTCCTACAAGTCTCCAAGTA
391 AAGAAGTCAAGAAACAATTTGACGCTGGCTTCCTACAAGTCTCCAAGTA
37240855 TCCAGAATGG
Statistics
Matches: 434, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
442 434 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (442 bp):
CTGAAATAGATTTTGAGAAGGCTGTTTGTTTAGGAGAATTTGAAGCCGAGGAAGATGCTGAAGAT
TGTGTCTCGCCTCCTGACTTACTGAGAATGGTTAAACAAGAAAAGAAACAGATTCTACCCCATCA
AGAATCTGTTGAGACAGTGAACTTGGGAAATGAAGAAAAGAAACAAGAAGTGAAGATTGGAACTT
CCATTTCAGAAAACACAAGGCAAGATTTGATCGCCTTACTCCATGAGTACAAGGATGTGTTTGCC
TGGTCTTATCAGGATATGCCAGGATTGAACACGGATATTGTGGTCCACAAGCTCCCACTAAAACC
AGAATGCAAGCCCGTTCAGCAGAAGTTAAGAAGGATGAGACCCGAAATGCTGTTGAAGATAAAAG
AAGAAGTCAAGAAACAATTTGACGCTGGCTTCCTACAAGTCTCCAAGTAATG
Found at i:37243849 original size:11 final size:11
Alignment explanation
Indices: 37243833--37243875 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 11
37243823 TATTATGCCC
37243833 AAAAAAAAACA
1 AAAAAAAAACA
37243844 AAAAAAAGAACA
1 AAAAAAA-AACA
37243856 AAAAAAGAAA-A
1 AAAAAA-AAACA
37243867 AGAAAAAAA
1 A-AAAAAAA
37243876 TCAAGATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
11 11 0.38
12 17 0.59
13 1 0.03
ACGTcount: A:0.88, C:0.05, G:0.07, T:0.00
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:37244829 original size:81 final size:79
Alignment explanation
Indices: 37244729--37244892 Score: 283
Period size: 79 Copynumber: 2.1 Consensus size: 79
37244719 TCAAGAAATA
*
37244729 TTTTTAAAATTCTGTTTTTTTTCAAAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
1 TTTTTAAAATTCTGCTTTTTTTC--AAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGG
37244794 GTCACGCTGAGGTATT
64 GTCACGCTGAGGTATT
* *
37244810 TTTTTTAATTTCTGCTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
1 TTTTTAAAATTCTGCTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
37244875 CACGCTGAGGTATT
66 CACGCTGAGGTATT
37244889 TTTT
1 TTTT
37244893 NNNNNNNNNN
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
79 60 0.75
81 20 0.25
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (79 bp):
TTTTTAAAATTCTGCTTTTTTTCAAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGT
CACGCTGAGGTATT
Found at i:37245709 original size:81 final size:81
Alignment explanation
Indices: 37245356--37246482 Score: 1166
Period size: 81 Copynumber: 14.0 Consensus size: 81
37245346 ATTTTTTGTC
* * *
37245356 TTTTTTT-AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGT--CACGCTGAGGTA-
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
*
37245416 -TTTTTAATTTATGTT
66 TTTTTTAATTTCTGTT
** * * * *
37245431 TTTTTTAAAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCACAC-C-GAGGTA
1 TTTTTT-TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTA
*
37245493 TTTCTTTTAAATTTATG--
65 TTT-TTTT-AATTTCTGTT
* * *
37245510 --TTTTTCAAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCGCATGCTGAGGTA
1 TTTTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTA
*
37245573 TTTTTTTTAAATTTCTATT
65 -TTTTTTT-AATTTCTGTT
* *
37245592 TTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCGCACGCTGAGGTAT
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
*
37245657 TTTTTTAATTTCTATT
66 TTTTTTAATTTCTGTT
* * *
37245673 TTTTTTTCAAAAATCAACTCATATTACAATAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGT-T
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
37245737 TTTTTTAAATTTCTGTT
66 TTTTTT-AATTTCTGTT
37245754 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
*
37245819 TTTTTTAAAATTTTTG-T
66 TTTTTT--AATTTCTGTT
*
37245836 TTTTTTTCAAAAATCAGCTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTA-
37245901 TTTTTTTTTAAAAATTTCTG-T
65 --TTTTTTT---AATTTCTGTT
37245922 TTTTTTT---AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
*
37245984 TTTTTAAAATTTCTGTTTTT
66 TTTTT-TAATTTCTG---TT
***
37246004 TATGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGT
1 T-T-TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGT
37246069 ATTTCTTTTAAATTTCTG--
64 ATTT-TTTT-AATTTCTGTT
* *
37246087 -TTTTTTCAAAAAATCAACTCATATTTCGAGAAGTGAGTTGAGCTTCGGGTCGCACGCTGAGGTA
1 TTTTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTA
*
37246151 TTTCTTTTAAATTTTTG-T
65 TTT-TTTT-AATTTCTGTT
**** *
37246169 TTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
37246234 TTCTTTTAAATTTCTGTT
66 TT-TTTT-AATTTCTGTT
***** * * * * *
37246252 TTTCAAAAAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTTGGAT--CACGCTGAGGTA
1 TTT-TTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTA
*
37246314 --TTTTTAATTTCGGTCT
65 TTTTTTTAATTTCTGT-T
* * * * *
37246330 TTTTTTT--AAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGT--CACACTAAGGTA-
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
*
37246389 TTTTTTAATTTATGTT
66 TTTTTTAATTTCTGTT
* * * * *
37246405 TTTTTTT---AAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGG-CGACACTCCGAGGTA
1 TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCG-CACGCTGAGGTA
*
37246465 --TTTTCAATTTCTGTT
65 TTTTTTTAATTTCTGTT
37246480 TTT
1 TTT
37246483 CAAATAAAAA
Statistics
Matches: 938, Mismatches: 68, Indels: 92
0.85 0.06 0.08
Matches are distributed among these distances:
74 38 0.04
75 78 0.08
76 21 0.02
77 75 0.08
78 40 0.04
79 6 0.01
80 39 0.04
81 229 0.24
82 149 0.16
83 140 0.15
84 31 0.03
85 7 0.01
86 17 0.02
87 57 0.06
88 11 0.01
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (81 bp):
TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTAT
TTTTTTAATTTCTGTT
Found at i:37245872 original size:163 final size:162
Alignment explanation
Indices: 37245348--37246468 Score: 1191
Period size: 163 Copynumber: 7.0 Consensus size: 162
37245338 GCTGAGGTAT
* * *
37245348 TTTTTGTCTTTTTTT-AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGT--CACGC
1 TTTTTGT-TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
* * ** *
37245409 TGAGG-TATTTTT-AATTTATGTTTTTTTTAAAAAAAATCAACTCATAATAC-AGAGGTGAGTTG
65 TGAGGTTTTTTTTAAATTTCTGTTTTTTTT-TCAAAAATCAACTCATATTACGAGAGGTGAGTTG
*
37245471 AGCCTCGGGTCACAC-C-GAGGTATTTCTTTTAAA
129 AGCCTCGGGTCGCACGCTGAGGTATTT-TTTTAAA
* * * *
37245504 TTTATG---TTTTTCAAAAAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCGAGTCGCATGC
1 TTTTTGTTTTTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
* *
37245566 TGAGGTATTTTTTTTAAATTTCTATTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
65 TGAGG--TTTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTT
*
37245631 GAGTCTCGGGTCGCACGCTGAGGTATTTTTTT-AA
128 GAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
* * *
37245665 TTTCTAT-TTTTTTTTCAAAAATCAACTCATATTACAATAAGTGAGTTGAGCCTCGGGTCGCACG
1 TTT-T-TGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACG
* *
37245729 CTGAGGTTTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTG
64 CTGAGGTTTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTG
37245794 AGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAAA
129 AGCCTCGGGTCGCACGCTGAGGTATTTTTTT-AAA
*
37245829 TTTTTGTTTTTTTTCAAAAATCAGCTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCT
1 TTTTTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCT
* *
37245894 GAGGTATTTTTTTTTTAAAAATTTCTG-TTTTTTTT---AAATCAACTCATATTGCGAGAAGTGA
66 GAGG----TTTTTTTT--AAATTTCTGTTTTTTTTTCAAAAATCAACTCATATTACGAGAGGTGA
*
37245955 GTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTAAAA
125 GTTGAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
* ***
37245993 TTTCTGTTTTTTATGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCG
1 --T-T-TTTGTT-T-TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCG
* *
37246058 CACGCTGAGGTATTTCTTTTAAATTTCTG---TTTTTTCAAAAAATCAACTCATATTTCGAGAAG
60 CACGCTGAGGT-TTT-TTTTAAATTTCTGTTTTTTTTTC-AAAAATCAACTCATATTACGAGAGG
*
37246120 TGAGTTGAGCTTCGGGTCGCACGCTGAGGTATTTCTTTTAAA
122 TGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTT-TTTTAAA
**** *
37246162 TTTTTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCT
1 TTTTTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCT
***** *
37246227 GAGGTATTTCTTTTAAATTTCTGTTTTTCAAAAAAAAAATCAACTCATAATAC-AGAGGTGAGTT
66 GAGGT-TTT-TTTTAAATTTCTGTTTTT-TTTTCAAAAATCAACTCATATTACGAGAGGTGAGTT
* *
37246291 GAGCCTTGGAT--CACGCTGAGGTA--TTTTT-AA
128 GAGCCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
** * * * * *
37246321 TTTCGGTCTTTTTTT-TAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGT--CACAC
1 TTTTTGT-TTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
* * * *
37246382 TAAGGTATTTTTT-AATTTATGTTTTTTTTT---AAATCAACTCATAATAC-AGAGGTGAGTTGA
65 TGAGGTTTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGA
* *
37246442 GCCTCGGG-CGACACTCCGAGGTATTTT
130 GCCTCGGGTCG-CACGCTGAGGTATTTT
37246469 CAATTTCTGT
Statistics
Matches: 838, Mismatches: 78, Indels: 101
0.82 0.08 0.10
Matches are distributed among these distances:
149 36 0.04
151 10 0.01
152 5 0.01
153 14 0.02
154 20 0.02
155 22 0.03
156 14 0.02
157 9 0.01
158 22 0.03
159 23 0.03
160 31 0.04
161 45 0.05
162 93 0.11
163 154 0.18
164 63 0.08
165 89 0.11
166 31 0.04
167 13 0.02
168 72 0.09
169 16 0.02
170 56 0.07
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (162 bp):
TTTTTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCT
GAGGTTTTTTTTAAATTTCTGTTTTTTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
CCTCGGGTCGCACGCTGAGGTATTTTTTTAAA
Found at i:37246058 original size:87 final size:88
Alignment explanation
Indices: 37245829--37246254 Score: 498
Period size: 82 Copynumber: 5.0 Consensus size: 88
37245819 TTTTTTAAAA
*
37245829 TTTT-TGTTTTTTTTCAAAAATCAGCTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
1 TTTTATGTTTTTTTT---AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGC
****
37245893 TGAGGTATTT-TTTT---TTT-AAAA
63 TGAGGTATTTCTTTTAAATTTCTGTT
* *
37245914 ATTTCTGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGA
1 TTTTATGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGA
*
37245979 GGTATTT-TTTAAAATTTCTGTT
66 GGTATTTCTTTTAAATTTCTGTT
37246001 TTTTATGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGA
1 TTTTATGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGA
37246066 GGTATTTCTTTTAAATTTCTGTT
66 GGTATTTCTTTTAAATTTCTGTT
** * *
37246089 TTTTCA--------AAAAATCAACTCATATTTCGAGAAGTGAGTTGAGCTTCGGGTCGCACGCTG
1 TTTT-ATGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTG
*
37246146 AGGTATTTCTTTTAAATTTTTGTT
65 AGGTATTTCTTTTAAATTTCTGTT
* **** *
37246170 TTTCA------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGA
1 TTTTATGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGA
37246229 GGTATTTCTTTTAAATTTCTGTT
66 GGTATTTCTTTTAAATTTCTGTT
37246252 TTT
1 TTT
37246255 CAAAAAAAAA
Statistics
Matches: 312, Mismatches: 20, Indels: 21
0.88 0.06 0.06
Matches are distributed among these distances:
80 1 0.00
81 73 0.23
82 74 0.24
83 59 0.19
85 3 0.01
86 13 0.04
87 70 0.22
88 18 0.06
89 1 0.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (88 bp):
TTTTATGTTTTTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGTCGCACGCTGA
GGTATTTCTTTTAAATTTCTGTT
Found at i:37246687 original size:29 final size:29
Alignment explanation
Indices: 37246654--37246766 Score: 129
Period size: 29 Copynumber: 3.9 Consensus size: 29
37246644 AAAAAATAAA
37246654 AAATTACATTTTAACCCCTAAACTTTTTG
1 AAATTACATTTTAACCCCTAAACTTTTTG
* * *
37246683 AAATTGCATTTTAACCCCTAAA-TTTCATA
1 AAATTACATTTTAACCCCTAAACTTT-TTG
* * *
37246712 AAATTACATTTTGACCCATAAAATTTTTG
1 AAATTACATTTTAACCCCTAAACTTTTTG
* * *
37246741 AAATTACTTTTTGACCACTAAACTTT
1 AAATTACATTTTAACCCCTAAACTTT
37246767 CTCAAAATTT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 3 0.04
29 64 0.91
30 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.41
Consensus pattern (29 bp):
AAATTACATTTTAACCCCTAAACTTTTTG
Found at i:37246762 original size:58 final size:59
Alignment explanation
Indices: 37246653--37246775 Score: 160
Period size: 58 Copynumber: 2.1 Consensus size: 59
37246643 CAAAAAATAA
* * * *
37246653 AAAATTACATTTTAACCCCTAAACTTTTTGAAATTGCATTTTAACCCCTAAA-TTTCAT-
1 AAAATTACATTTTAACCCATAAAATTTTTGAAATTACATTTTAACCACTAAACTTTC-TC
* * *
37246711 AAAATTACATTTTGACCCATAAAATTTTTGAAATTACTTTTTGACCACTAAACTTTCTC
1 AAAATTACATTTTAACCCATAAAATTTTTGAAATTACATTTTAACCACTAAACTTTCTC
37246770 AAAATT
1 AAAATT
37246776 TTGTTTCGGC
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
58 46 0.82
59 10 0.18
ACGTcount: A:0.37, C:0.19, G:0.04, T:0.40
Consensus pattern (59 bp):
AAAATTACATTTTAACCCATAAAATTTTTGAAATTACATTTTAACCACTAAACTTTCTC
Found at i:37247002 original size:6 final size:6
Alignment explanation
Indices: 37246991--37247015 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
37246981 GCGAATCAAG
37246991 AAAGAA AAAGAA AAAGAA AAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA A
37247016 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:37247123 original size:3 final size:3
Alignment explanation
Indices: 37247115--37247193 Score: 76
Period size: 3 Copynumber: 26.7 Consensus size: 3
37247105 CCAAGGCGTA
37247115 AAG AAG AAG AAG AAG AAG AAG AAGG AAG AAG AAAG AAG AAGG AAG AA-
1 AAG AAG AAG AAG AAG AAG AAG AA-G AAG AAG -AAG AAG AA-G AAG AAG
* * *
37247162 AA- AAG AAA AAG -AG AA- AAG AAA AAG AAA AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
37247194 AAATAATAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
2 8 0.12
3 47 0.73
4 9 0.14
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:37247196 original size:7 final size:7
Alignment explanation
Indices: 37247143--37247196 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
37247133 AAGAAGGAAG
*
37247143 AAGAAAG
1 AAGAAAA
**
37247150 AAGAAGG
1 AAGAAAA
37247157 AAGAAAA
1 AAGAAAA
37247164 AAG-AAA
1 AAGAAAA
*
37247170 AAGAGAA
1 AAGAAAA
37247177 AAG-AAA
1 AAGAAAA
37247183 AAG-AAA
1 AAGAAAA
37247189 AAGAAAA
1 AAGAAAA
37247196 A
1 A
37247197 TAATAAAGCA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
6 17 0.43
7 23 0.57
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (7 bp):
AAGAAAA
Found at i:37247204 original size:19 final size:19
Alignment explanation
Indices: 37247140--37247196 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
37247130 AAGAAGAAGG
*
37247140 AAGAAGAAAGAAGAAG-GAA
1 AAGAA-AAAGAAAAAGAGAA
*
37247159 GA-AAAAAGAAAAAGAGAA
1 AAGAAAAAGAAAAAGAGAA
37247177 AAGAAAAAGAAAAAGA-AA
1 AAGAAAAAGAAAAAGAGAA
37247195 AA
1 AA
37247197 TAATAAAGCA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 9 0.27
18 10 0.30
19 14 0.42
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (19 bp):
AAGAAAAAGAAAAAGAGAA
Found at i:37247308 original size:11 final size:11
Alignment explanation
Indices: 37247292--37247330 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37247282 GTCAAGCCCA
37247292 AAAAAAAAAAG
1 AAAAAAAAAAG
*
37247303 AAAAAAGAAGAG
1 AAAAAA-AAAAG
*
37247315 AAAAAGAAAAG
1 AAAAAAAAAAG
37247326 AAAAA
1 AAAAA
37247331 TTCAATTTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:37247717 original size:21 final size:21
Alignment explanation
Indices: 37247691--37247733 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
37247681 TCGGGTTTCG
*
37247691 AAATTTTTCGTGTCTTCAAAA
1 AAATTTCTCGTGTCTTCAAAA
*
37247712 AAATTTCTCGTGTTTTCAAAA
1 AAATTTCTCGTGTCTTCAAAA
37247733 A
1 A
37247734 TAAAGTAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (21 bp):
AAATTTCTCGTGTCTTCAAAA
Found at i:37247890 original size:36 final size:36
Alignment explanation
Indices: 37247844--37247969 Score: 148
Period size: 36 Copynumber: 3.5 Consensus size: 36
37247834 ATTAGAAATT
37247844 TTTTCGTGTTTTCAAAAAATTCCAAT-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAAATTCCAATGTTTCAAAAA
* * **
37247879 TTTTTCATGTTTTCAGAAAATTCCCGTGTTTCAAAAA
1 -TTTTCGTGTTTTCAAAAAATTCCAATGTTTCAAAAA
* * * **
37247916 TTCTCGTGTTTTC-AAAAATTTCGATGTTTTGAAAA
1 TTTTCGTGTTTTCAAAAAATTCCAATGTTTCAAAAA
37247951 TTTTCGTGTTTTCAAAAAA
1 TTTTCGTGTTTTCAAAAAA
37247970 AAATCTCGTG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
35 28 0.37
36 38 0.51
37 9 0.12
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.44
Consensus pattern (36 bp):
TTTTCGTGTTTTCAAAAAATTCCAATGTTTCAAAAA
Found at i:37247917 original size:17 final size:18
Alignment explanation
Indices: 37247886--37247968 Score: 82
Period size: 18 Copynumber: 4.7 Consensus size: 18
37247876 AAATTTTTCA
37247886 TGTTTTCAGAAAATTCCCG
1 TGTTTTCA-AAAATTCCCG
*
37247905 TG-TTTCAAAAATTCTCG
1 TGTTTTCAAAAATTCCCG
*
37247922 TGTTTTCAAAAATT-TCG
1 TGTTTTCAAAAATTCCCG
* **
37247939 ATGTTTT-GAAAATTTTCG
1 -TGTTTTCAAAAATTCCCG
37247957 TGTTTTCAAAAA
1 TGTTTTCAAAAA
37247969 AAAATCTCGT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
17 26 0.46
18 29 0.51
19 2 0.04
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (18 bp):
TGTTTTCAAAAATTCCCG
Found at i:37248024 original size:34 final size:34
Alignment explanation
Indices: 37247904--37248044 Score: 108
Period size: 34 Copynumber: 4.0 Consensus size: 34
37247894 GAAAATTCCC
* * *
37247904 GTGTTTCAAAAATTCTCGTGTTTT-CAAAAATTT
1 GTGTTTCATAAATTCTCGTGTTTTAAAAAAAATT
* *
37247937 CGATGTTTTGA-AAATTTTCGTGTTTTCAAAAAAAAATCT
1 -G-TG-TTTCATAAATTCTCGTGTTTT--AAAAAAAAT-T
* * * *
37247976 CGTGTTTCATAAATTTTCGTTTTTTAGACAAAATT
1 -GTGTTTCATAAATTCTCGTGTTTTAAAAAAAATT
37248011 GTGTTTCCA-AAATTCTCGTGTTTTAAAAAAAATT
1 GTGTTT-CATAAATTCTCGTGTTTTAAAAAAAATT
37248045 CTTGTGTTTT
Statistics
Matches: 87, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
34 28 0.32
35 19 0.22
36 11 0.13
37 4 0.05
38 22 0.25
39 3 0.03
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.44
Consensus pattern (34 bp):
GTGTTTCATAAATTCTCGTGTTTTAAAAAAAATT
Found at i:37248033 original size:17 final size:17
Alignment explanation
Indices: 37247870--37248039 Score: 94
Period size: 17 Copynumber: 9.5 Consensus size: 17
37247860 AAATTCCAAT
* *
37247870 TTTCAAAAATTTTTCATG
1 TTTCAAAAA-TTCTCGTG
*
37247888 TTTTCAGAAAATTCCCGTG
1 -TTTCA-AAAATTCTCGTG
37247907 TTTCAAAAATTCTCGTG
1 TTTCAAAAATTCTCGTG
37247924 TTTTCAAAAATT-TCGATG
1 -TTTCAAAAATTCTCG-TG
** *
37247942 TTTTGAAAATTTTCGTG
1 TTTCAAAAATTCTCGTG
*
37247959 TTTTCAAAAAAAAATCTCGTG
1 -TTTC---AAAAATTCTCGTG
* * *
37247980 TTTCATAAATTTTCGTT
1 TTTCAAAAATTCTCGTG
* *
37247997 TTTTAGACAAAAT-T-GTG
1 TTTCA-A-AAATTCTCGTG
*
37248014 TTTCCAAAATTCTCGTG
1 TTTCAAAAATTCTCGTG
*
37248031 TTTTAAAAA
1 TTTCAAAAA
37248040 AAATTCTTGT
Statistics
Matches: 116, Mismatches: 23, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
15 4 0.03
16 2 0.02
17 53 0.46
18 25 0.22
19 14 0.12
20 8 0.07
21 10 0.09
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (17 bp):
TTTCAAAAATTCTCGTG
Found at i:37248044 original size:20 final size:20
Alignment explanation
Indices: 37248019--37248056 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37248009 TTGTGTTTCC
37248019 AAAATTCTCGTGTTTTAAAA
1 AAAATTCTCGTGTTTTAAAA
*
37248039 AAAATTCTTGTGTTTTAA
1 AAAATTCTCGTGTTTTAA
37248057 TCGGATCACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.45
Consensus pattern (20 bp):
AAAATTCTCGTGTTTTAAAA
Found at i:37249479 original size:29 final size:30
Alignment explanation
Indices: 37249420--37249477 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
37249410 TCCGAGCCTT
*
37249420 GGGGCAAAAATGTAATTATGCAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
*
37249450 GGGGCAAAATTGTAAATT-TGAAAAAGTT
1 GGGGCAAAAATGT-AATTATGAAAAAGTT
37249478 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.43, C:0.05, G:0.24, T:0.28
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:37249889 original size:50 final size:50
Alignment explanation
Indices: 37249814--37249999 Score: 282
Period size: 50 Copynumber: 3.7 Consensus size: 50
37249804 ATTTGGGTAA
37249814 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
* * *
37249864 AGAGGTCCCATATAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
** * *
37249914 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
**
37249964 AGTACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
37250000 TTTGGCATGT
Statistics
Matches: 121, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 92 0.76
51 29 0.24
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATG
Found at i:37253000 original size:24 final size:24
Alignment explanation
Indices: 37252971--37253023 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
37252961 CCGAAGGTGC
*
37252971 AGTGGATTGAACCTTAAAGGTTAT
1 AGTGGATTGAACCTTAAAGATTAT
* *
37252995 GGTGGATTGAACCTTGAAGATTAT
1 AGTGGATTGAACCTTAAAGATTAT
37253019 AGTGG
1 AGTGG
37253024 GGCAAGCCGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.32
Consensus pattern (24 bp):
AGTGGATTGAACCTTAAAGATTAT
Found at i:37253462 original size:45 final size:45
Alignment explanation
Indices: 37253327--37253822 Score: 562
Period size: 45 Copynumber: 11.1 Consensus size: 45
37253317 ATGGATTGAA
* *
37253327 GAAGATTGCAGATCTTGTCTTTCTGTATTGGCAGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *** * * *
37253372 GAAGATA-CA-AGCCTCGTCTCCCTG-AGCAGCAGTGGAGTAGGTC
1 GAAGATAGCAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* *
37253415 GAAGATAGCAGATATTGTCTTCCTGTATTGGCAAC-ATAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGA-AGTAGATC
*
37253460 GAATATAGCATG-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
1 GAAGATAGCA-GATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
*
37253505 GAAGATAGCAGATCTTGTCTTCCTATATTGGCAGC-AGAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGA-AGTAGATC
* * *
37253550 GAAAATAGCA-AGTTTTGTCTTCCTGTATTGGTAGCGAAGTAGATC
1 GAAGATAGCAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *
37253595 AAAGATATCA-AGTATTGTCTTCCTGTATTGGCAGC-AATGTATATC
1 GAAGATAGCAGA-TCTTGTCTTCCTGTATTGGCAGCGAA-GTAGATC
* *
37253640 -AGAGATAGCAGGTCTTGTCTTCCTGTATTGGCAACGAAGTAGATC
1 GA-AGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* *
37253685 GAAGATAGCAGGTCTTGTCTTCCTATATTGGCAGCGAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* *
37253730 GAAGATAGCAGGTCTTGTCTTCCTGTATTGGCAGCAAAGTAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
* * * *
37253775 GAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGGTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
37253820 GAA
1 GAA
37253823 AACACTAGTC
Statistics
Matches: 383, Mismatches: 52, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
43 21 0.05
44 28 0.07
45 328 0.86
46 6 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (45 bp):
GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
Found at i:37253863 original size:43 final size:44
Alignment explanation
Indices: 37253807--37253909 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 44
37253797 CTGTACTGGC
* *
37253807 AGTGAAGCAGGTCGAAAACACTAG-TCCTATCTCCCTGAGCAGT
1 AGTGGAGCAGGTCGAAAACACTAGATCCTATCTCCCTAAGCAGT
* * *** *
37253850 AGTGGAGTAGGTCGAAGATTGTAGATCCTGTCTCCCTAAGCAGT
1 AGTGGAGCAGGTCGAAAACACTAGATCCTATCTCCCTAAGCAGT
*
37253894 AGTGGAGCAGATCGAA
1 AGTGGAGCAGGTCGAA
37253910 GATAGTGACT
Statistics
Matches: 49, Mismatches: 10, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
43 18 0.37
44 31 0.63
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (44 bp):
AGTGGAGCAGGTCGAAAACACTAGATCCTATCTCCCTAAGCAGT
Found at i:37254056 original size:72 final size:72
Alignment explanation
Indices: 37253948--37254084 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 72
37253938 CAGTGGAACA
* * * * * *
37253948 GATTAAAGCTAAAGGTAGCGAATCTTGTTTCATTGGCATTGTAGTGGAATAGATTAAAGCTAAAG
1 GATTAAAGCTAAAGGCAGCGAATCCTATCTCATTGGCATTATAGTAGAATAGATTAAAGCTAAAG
37254013 TGGAGGG
66 TGGAGGG
* * *
37254020 GATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCGTTATAGTAGAATAGATTAAAGCTAAAG
1 GATTAAAGCTAAAGGCAGCGAATCCTATCTCATTGGCATTATAGTAGAATAGATTAAAGCTAAAG
37254085 GTAGCGAATC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 56 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (72 bp):
GATTAAAGCTAAAGGCAGCGAATCCTATCTCATTGGCATTATAGTAGAATAGATTAAAGCTAAAG
TGGAGGG
Found at i:37254343 original size:44 final size:44
Alignment explanation
Indices: 37254226--37254343 Score: 200
Period size: 44 Copynumber: 2.7 Consensus size: 44
37254216 TAGAAAATCT
*
37254226 TATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTACTAGTCC
1 TATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTTACTAGTCC
*
37254270 TATCTCCCTGAAGTTGTAGTGGAGCGGATTGAGGTTACTAGTCC
1 TATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTTACTAGTCC
* *
37254314 TATCTCCCTGAAGTTGCAGTGGAGTGGATT
1 TATCTCCCTGAAGTTGTAGTGGAGCGGATT
37254344 AAAATGATGG
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 70 1.00
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGTAGTGGAGCGGATTGAAGTTACTAGTCC
Found at i:37254565 original size:46 final size:45
Alignment explanation
Indices: 37254423--37254635 Score: 180
Period size: 46 Copynumber: 4.7 Consensus size: 45
37254413 AGTTGAAGCT
* * * * *
37254423 ACAAGTCTTGTCTCACTGAGGTTGCAGTAGAGTAGACTGAAGATA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
** * * *
37254468 AC-AGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGA-TCACACTATA
1 ACAAG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-A-GATA
*
37254514 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCATACTGAAGATA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
* * * *
37254559 ACCAAGTCTTATCTCCCTAAAGTTGTAGTGGAGTAGACTAAAGATA
1 A-CAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
* * * **
37254605 GCGAA-TTTTATTTTTCTGAAGTTGCAGTGGA
1 AC-AAGTCTTATCTCCCTGAAGTTGCAGTGGA
37254636 ATAGATTGAA
Statistics
Matches: 136, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
44 4 0.03
45 54 0.40
46 74 0.54
47 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (45 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA
Found at i:37254925 original size:50 final size:49
Alignment explanation
Indices: 37254867--37255249 Score: 336
Period size: 50 Copynumber: 7.7 Consensus size: 49
37254857 GCAGTGGAAC
* *
37254867 AGATTGAAGCTACAACAGCGAACCTTGCTTCCCCGACATGACAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATG-CAGTTAAAT
* * * ** *
37254917 AGATTGAAGCTATAACAGCGAATCTTACTT-CCCTAGCGGTGCAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGA-C-ATGCAGTTAAAT
* * * *
37254967 AGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTACAATTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACA-TGCAGTTAAAT
* * * ** *** * *
37255017 AGATTGAAGCTACAATAGTGAATCTTACTTTTCTGGTGGTGCAGTGAAAC
1 AGATTGAAGCTACAACAGCGAATCTTAC-TTCCCCGACATGCAGTTAAAT
** * **
37255067 AGATTGAAGCTACAATGGCGAATCTTGCTTCATCGACATTGCAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACA-TGCAGTTAAAT
** * * * ** *
37255117 AGATTGAAGCTACAACAGCGAATCTTACTTCCTTGGCGGTGTAGTGGAAC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGAC-ATGCAGTTAAAT
* * * *
37255167 AGATTTAAGCTACAATAGCGAATCTTGCTTCCCCGATATTGCAGTTAAAT
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACA-TGCAGTTAAAT
37255217 AGATTGAAGCTACAACAGCGAATCTTACTTCCC
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCC
37255250 TGGCGAACAG
Statistics
Matches: 258, Mismatches: 67, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
49 8 0.03
50 240 0.93
51 10 0.04
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (49 bp):
AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATGCAGTTAAAT
Found at i:37255254 original size:100 final size:100
Alignment explanation
Indices: 37254846--37255254 Score: 604
Period size: 100 Copynumber: 4.1 Consensus size: 100
37254836 CAACCTTATC
* *
37254846 TCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAACCTTGCTTCCCCGACA-TGACA
1 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTG-CA
*
37254910 GTTAAATAGATTGAAGCTATAACAGCGAATCTTACT
65 GTTAAATAGATTGAAGCTACAACAGCGAATCTTACT
* * * *
37254946 TCCCTAGCGGTGCAGTGGAACAGATTGAAGCTACAACAGTGAATCTTGCTTCCCCGACATTACAA
1 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
* *
37255011 TTAAATAGATTGAAGCTACAATAGTGAATCTTACT
66 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
** * * ** **
37255046 TTTCTGGTGGTGCAGTGAAACAGATTGAAGCTACAATGGCGAATCTTGCTTCATCGACATTGCAG
1 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
37255111 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
66 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
* * * * *
37255146 TCCTTGGCGGTGTAGTGGAACAGATTTAAGCTACAATAGCGAATCTTGCTTCCCCGATATTGCAG
1 TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
37255211 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
66 TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
37255246 TCCCTGGCG
1 TCCCTGGCG
37255255 AACAGATCAA
Statistics
Matches: 275, Mismatches: 33, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
100 274 1.00
101 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (100 bp):
TCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACATTGCAG
TTAAATAGATTGAAGCTACAACAGCGAATCTTACT
Found at i:37255443 original size:44 final size:44
Alignment explanation
Indices: 37255369--37255483 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 44
37255359 ATAAATAACC
* * * * * * *
37255369 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGCTATT
1 AATCCTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCGATG
*
37255413 AATCCTATCTCCCTAAAGTTGCAATAGAGCAGATTAAAGCGATG
1 AATCCTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCGATG
*
37255457 AATCCTATAC-CTCTGAAGTTGCAATAG
1 AATCCTAT-CTCCCTGAAGTTGCAATAG
37255484 GTCGGGTTAA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 59 0.98
45 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (44 bp):
AATCCTATCTCCCTGAAGTTGCAATAGAGCAGATTAAAGCGATG
Found at i:37255611 original size:44 final size:45
Alignment explanation
Indices: 37255562--37255648 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 45
37255552 ACCTCACCCC
* *
37255562 CTAAAGTCGCAGCAGAGTGGATTGAAG-CTACAAGTCGTATCTTT
1 CTAAAGTCGCAGCAGAGTAGATTGAAGAATACAAGTCGTATCTTT
* ** *
37255606 CTAAAGTTGCAGTGGAGTAGATTGAAGAATACAAGTCTTATCT
1 CTAAAGTCGCAGCAGAGTAGATTGAAGAATACAAGTCGTATCT
37255649 CCCTGAAGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 23 0.64
45 13 0.36
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (45 bp):
CTAAAGTCGCAGCAGAGTAGATTGAAGAATACAAGTCGTATCTTT
Found at i:37255703 original size:44 final size:45
Alignment explanation
Indices: 37255606--37255703 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
37255596 TCGTATCTTT
* * * * *
37255606 CTAAAGTTGCAGTGGAGTAGATTGAAGAATACAAGTCTTATCTCC
1 CTAAAGTTGCAATAGAGCAGACTGAAGAATACAAGTCTTATCCCC
* *
37255651 CTGAAGTTGCAATAGAGCAGACTGAAG-CTACTAA-TCTTATCCCC
1 CTAAAGTTGCAATAGAGCAGACTGAAGAATAC-AAGTCTTATCCCC
37255695 CTAAAGTTG
1 CTAAAGTTG
37255704 TAGTGGAGCG
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 20 0.45
45 24 0.55
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (45 bp):
CTAAAGTTGCAATAGAGCAGACTGAAGAATACAAGTCTTATCCCC
Found at i:37256515 original size:17 final size:18
Alignment explanation
Indices: 37256493--37256534 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
37256483 TTAATATCTA
37256493 TTTTATCAATATA-AAAT
1 TTTTATCAATATATAAAT
* * *
37256510 TTTTATTATTTTATAAAT
1 TTTTATCAATATATAAAT
37256528 TTTTATC
1 TTTTATC
37256535 CATAAATATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTATCAATATATAAAT
Found at i:37257147 original size:6 final size:6
Alignment explanation
Indices: 37257138--37257165 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
37257128 GTAGAAAAAG
37257138 AAGAAT AAGAAT AAGAAT AAGAAT AAGA
1 AAGAAT AAGAAT AAGAAT AAGAAT AAGA
37257166 GAAGAAATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.14
Consensus pattern (6 bp):
AAGAAT
Found at i:37264025 original size:27 final size:27
Alignment explanation
Indices: 37263987--37264039 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
37263977 AGATTATCTT
* *
37263987 ATTTGATTCATTTGGTTGGAATGTAAG
1 ATTTGATTCATTTAGTTAGAATGTAAG
*
37264014 ATTTGGTTCATTTAGTTAGAATGTAA
1 ATTTGATTCATTTAGTTAGAATGTAA
37264040 TATTCAGATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.45
Consensus pattern (27 bp):
ATTTGATTCATTTAGTTAGAATGTAAG
Found at i:37264494 original size:4 final size:4
Alignment explanation
Indices: 37264485--37264509 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
37264475 CTATATACTC
37264485 ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA A
37264510 GGATTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:37265737 original size:15 final size:16
Alignment explanation
Indices: 37265717--37265749 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
37265707 TAATACACAT
*
37265717 TTGTGTTGTG-TTGTG
1 TTGTGTTGCGTTTGTG
37265732 TTGTGTTGCGTTTGTG
1 TTGTGTTGCGTTTGTG
37265748 TT
1 TT
37265750 TACACAGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.00, C:0.03, G:0.36, T:0.61
Consensus pattern (16 bp):
TTGTGTTGCGTTTGTG
Found at i:37267836 original size:173 final size:173
Alignment explanation
Indices: 37267547--37267893 Score: 694
Period size: 173 Copynumber: 2.0 Consensus size: 173
37267537 CAATTTAAAT
37267547 AGGCTATGCCTAATTTCCAATTTTTCATATTTGGAATGCAAAGGCATATATAATTTCAACTTAGA
1 AGGCTATGCCTAATTTCCAATTTTTCATATTTGGAATGCAAAGGCATATATAATTTCAACTTAGA
37267612 TACAGGTATAACAAGGAGTAAATCTATCTAATTCACTAACAGTATAAGCTATTAAAAAAATAAAG
66 TACAGGTATAACAAGGAGTAAATCTATCTAATTCACTAACAGTATAAGCTATTAAAAAAATAAAG
37267677 CAAGTAATACATAATTCCACAAATTGTCAAGTAAACTCAACAG
131 CAAGTAATACATAATTCCACAAATTGTCAAGTAAACTCAACAG
37267720 AGGCTATGCCTAATTTCCAATTTTTCATATTTGGAATGCAAAGGCATATATAATTTCAACTTAGA
1 AGGCTATGCCTAATTTCCAATTTTTCATATTTGGAATGCAAAGGCATATATAATTTCAACTTAGA
37267785 TACAGGTATAACAAGGAGTAAATCTATCTAATTCACTAACAGTATAAGCTATTAAAAAAATAAAG
66 TACAGGTATAACAAGGAGTAAATCTATCTAATTCACTAACAGTATAAGCTATTAAAAAAATAAAG
37267850 CAAGTAATACATAATTCCACAAATTGTCAAGTAAACTCAACAG
131 CAAGTAATACATAATTCCACAAATTGTCAAGTAAACTCAACAG
37267893 A
1 A
37267894 TTAAATTGAA
Statistics
Matches: 174, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
173 174 1.00
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (173 bp):
AGGCTATGCCTAATTTCCAATTTTTCATATTTGGAATGCAAAGGCATATATAATTTCAACTTAGA
TACAGGTATAACAAGGAGTAAATCTATCTAATTCACTAACAGTATAAGCTATTAAAAAAATAAAG
CAAGTAATACATAATTCCACAAATTGTCAAGTAAACTCAACAG
Found at i:37268718 original size:25 final size:25
Alignment explanation
Indices: 37268671--37268740 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
37268661 ATTATTCATC
* *
37268671 TAAATTTTTTAAAAATT-TTAAAATT
1 TAAA-TTTTTAAAAATTATAAAAATA
*
37268696 TTAATTTTTAAAAATTATAAAAATA
1 TAAATTTTTAAAAATTATAAAAATA
* *
37268721 TAAACTATTAAAAATTATAA
1 TAAATTTTTAAAAATTATAA
37268741 TTTAATTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.32
25 26 0.68
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (25 bp):
TAAATTTTTAAAAATTATAAAAATA
Found at i:37270144 original size:2 final size:2
Alignment explanation
Indices: 37270137--37270170 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
37270127 TTCAGAAGTC
37270137 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
37270171 GTTCTGCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:37275010 original size:48 final size:50
Alignment explanation
Indices: 37274944--37275038 Score: 149
Period size: 48 Copynumber: 1.9 Consensus size: 50
37274934 TTAAAAACAG
* *
37274944 CATTTATCTCAATAAATTAAAGTAATAATA-T-TTTTAAAAAAAACAAAT
1 CATTAATCTCAATAAATTAAACTAATAATATTATTTTAAAAAAAACAAAT
*
37274992 CATTAATCTCAATCAATTAAACTAATAATATTATTTTAAAAAAAACA
1 CATTAATCTCAATAAATTAAACTAATAATATTATTTTAAAAAAAACA
37275039 TGTTTTACAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
48 27 0.64
49 1 0.02
50 14 0.33
ACGTcount: A:0.54, C:0.11, G:0.01, T:0.35
Consensus pattern (50 bp):
CATTAATCTCAATAAATTAAACTAATAATATTATTTTAAAAAAAACAAAT
Found at i:37281936 original size:6 final size:6
Alignment explanation
Indices: 37281896--37281933 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
37281886 CCTTTTGTCT
* *
37281896 CCTCCT CCTCCA CCTCCA CCTCCA CCTCCA CCGCCA CC
1 CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA CCTCCA CC
37281934 GCCGCCGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.13, C:0.68, G:0.03, T:0.16
Consensus pattern (6 bp):
CCTCCA
Found at i:37287059 original size:16 final size:17
Alignment explanation
Indices: 37287023--37287059 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
37287013 CTCCAAGTTA
37287023 GAAATGACAACCAAATC
1 GAAATGACAACCAAATC
37287040 -AAATGACAACC-AATC
1 GAAATGACAACCAAATC
37287055 GAAAT
1 GAAAT
37287060 ACTGATCCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.54, C:0.22, G:0.11, T:0.14
Consensus pattern (17 bp):
GAAATGACAACCAAATC
Found at i:37289509 original size:26 final size:27
Alignment explanation
Indices: 37289475--37289529 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
37289465 ATCAAACCCT
*
37289475 ATCAACACAAAAAT-GAAACCACAAAA
1 ATCAACACAAAAATGGAAACCAAAAAA
* * *
37289501 ATCAGCACAAACATGGGAACCAAAAAA
1 ATCAACACAAAAATGGAAACCAAAAAA
37289528 AT
1 AT
37289530 TGCAACAAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.60, C:0.22, G:0.09, T:0.09
Consensus pattern (27 bp):
ATCAACACAAAAATGGAAACCAAAAAA
Found at i:37295831 original size:50 final size:50
Alignment explanation
Indices: 37295761--37295861 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
37295751 TTTCTTAATA
37295761 TTTTAGCAACATTTTCCCATAATTATAAGTATTCCTAGTAATCACATTTT
1 TTTTAGCAACATTTTCCCATAATTATAAGTATTCCTAGTAATCACATTTT
37295811 TTTTAGCAACATTTTCCCATAATTATAAGTATTCCTAGTAATCACATTTT
1 TTTTAGCAACATTTTCCCATAATTATAAGTATTCCTAGTAATCACATTTT
37295861 T
1 T
37295862 AACTATCTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.45
Consensus pattern (50 bp):
TTTTAGCAACATTTTCCCATAATTATAAGTATTCCTAGTAATCACATTTT
Found at i:37298891 original size:24 final size:24
Alignment explanation
Indices: 37298864--37298916 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
37298854 TGCAATCGAT
*
37298864 AGGGTGAAGAGAGGAGCTGTGGAA
1 AGGGTGAAGAAAGGAGCTGTGGAA
37298888 AGGGTGAAGAAAGGAGCTGTGGAA
1 AGGGTGAAGAAAGGAGCTGTGGAA
37298912 AGGGT
1 AGGGT
37298917 TTCAAAGGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.34, C:0.04, G:0.49, T:0.13
Consensus pattern (24 bp):
AGGGTGAAGAAAGGAGCTGTGGAA
Found at i:37299365 original size:274 final size:274
Alignment explanation
Indices: 37298876--37299428 Score: 1045
Period size: 274 Copynumber: 2.0 Consensus size: 274
37298866 GGTGAAGAGA
*
37298876 GGAGCTGTGGAAAGGGTGAAGAAAGGAGCTGTGGAAAGGGTTTCAAAGGTGAATAGATGAGCTGT
1 GGAGCTGTGGAAAGGCTGAAGAAAGGAGCTGTGGAAAGGGTTTCAAAGGTGAATAGATGAGCTGT
*
37298941 GGAAAATGTCTTACCGATTTCTAAGGGGTAAGACATTTTCCGGAAAGATGAGATGATTTTACCCG
66 GAAAAATGTCTTACCGATTTCTAAGGGGTAAGACATTTTCCGGAAAGATGAGATGATTTTACCCG
37299006 TGTTGTGGAATTGATTTTACAAAAGTAAAATATTTTCCTCCAAACAAACATTGGAAAATGGGGAA
131 TGTTGTGGAATTGATTTTACAAAAGTAAAATATTTTCCTCCAAACAAACATTGGAAAATGGGGAA
* *
37299071 AACTAATTCTGAAAAATATTTTTCCTTTATCAAATAGACCCTAAATTCATTCATTGGAAATAGTA
196 AACTAATTCCGAAAAATATTTTTCCTTTATCAAACAGACCCTAAATTCATTCATTGGAAATAGTA
37299136 ATACCAATGATCAT
261 ATACCAATGATCAT
37299150 GGAGCTGTGGAAAGGCTGAAGAAAGGAGCTGTGGAAAGGGTTTCAAAGGTGAATAGATGAGCTGT
1 GGAGCTGTGGAAAGGCTGAAGAAAGGAGCTGTGGAAAGGGTTTCAAAGGTGAATAGATGAGCTGT
*
37299215 GAAAAATGTCTTACCGATTTCTAAGGGGTAAGACATTTTTCGGAAAGATGAGATGATTTTACCCG
66 GAAAAATGTCTTACCGATTTCTAAGGGGTAAGACATTTTCCGGAAAGATGAGATGATTTTACCCG
37299280 TGTTGTGGAATTGATTTTACAAAAGTAAAATATTTTCCTCCAAACAAACATTGGAAAATGGGGAA
131 TGTTGTGGAATTGATTTTACAAAAGTAAAATATTTTCCTCCAAACAAACATTGGAAAATGGGGAA
37299345 AA-TCAATTCCGAAAAATATTTTTCCTTTATCAAACAGACCCTAAATTCATTCATTGGAAATAGT
196 AACT-AATTCCGAAAAATATTTTTCCTTTATCAAACAGACCCTAAATTCATTCATTGGAAATAGT
37299409 AATACCAATGATCAT
260 AATACCAATGATCAT
37299424 GGAGC
1 GGAGC
37299429 CCCTCCAAAA
Statistics
Matches: 273, Mismatches: 5, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
273 1 0.00
274 272 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (274 bp):
GGAGCTGTGGAAAGGCTGAAGAAAGGAGCTGTGGAAAGGGTTTCAAAGGTGAATAGATGAGCTGT
GAAAAATGTCTTACCGATTTCTAAGGGGTAAGACATTTTCCGGAAAGATGAGATGATTTTACCCG
TGTTGTGGAATTGATTTTACAAAAGTAAAATATTTTCCTCCAAACAAACATTGGAAAATGGGGAA
AACTAATTCCGAAAAATATTTTTCCTTTATCAAACAGACCCTAAATTCATTCATTGGAAATAGTA
ATACCAATGATCAT
Found at i:37300045 original size:31 final size:31
Alignment explanation
Indices: 37300007--37300082 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
37299997 CTTTTATTTG
* * *
37300007 TTCAATTTTAGTCTTTGTACTTTTTAAAATT
1 TTCAATTTTAGTCCTTATACTTTTCAAAATT
*
37300038 TTCAATTTTAGTCCTTATACTTTTCAAATTT
1 TTCAATTTTAGTCCTTATACTTTTCAAAATT
*
37300069 TTAAAATTTTAGTC
1 TT-CAATTTTAGTC
37300083 ATGACCTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 29 0.74
32 10 0.26
ACGTcount: A:0.28, C:0.12, G:0.05, T:0.55
Consensus pattern (31 bp):
TTCAATTTTAGTCCTTATACTTTTCAAAATT
Found at i:37304589 original size:17 final size:16
Alignment explanation
Indices: 37304546--37304589 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
37304536 ATGTTATTCG
*
37304546 TTTATATATTTACTTAT
1 TTTAT-TATATACTTAT
37304563 TTTA-TATATACATTAT
1 TTTATTATATAC-TTAT
37304579 TTTATTATATA
1 TTTATTATATA
37304590 TGTATTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 6 0.25
16 8 0.33
17 10 0.42
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTATTATATACTTAT
Found at i:37304597 original size:16 final size:16
Alignment explanation
Indices: 37304550--37304589 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
37304540 TATTCGTTTA
*
37304550 TATATTTAC-TTATTT
1 TATATATACATTATTT
37304565 TATATATACATTATTT
1 TATATATACATTATTT
37304581 TATTATATA
1 TA-TATATA
37304590 TGTATTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 8 0.36
17 6 0.27
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (16 bp):
TATATATACATTATTT
Found at i:37304926 original size:29 final size:28
Alignment explanation
Indices: 37304893--37304959 Score: 98
Period size: 29 Copynumber: 2.4 Consensus size: 28
37304883 TTTTAACATC
* *
37304893 TTTAATTTATTTCAACTTATTTCAATAT
1 TTTAATTTATTTAAACTTATTTAAATAT
*
37304921 TGTTAATTTATTTAAATTTATTTAAATAT
1 T-TTAATTTATTTAAACTTATTTAAATAT
37304950 TTTAATTTAT
1 TTTAATTTAT
37304960 ATATATTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 10 0.29
29 25 0.71
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (28 bp):
TTTAATTTATTTAAACTTATTTAAATAT
Found at i:37304971 original size:29 final size:29
Alignment explanation
Indices: 37304894--37304972 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
37304884 TTTAACATCT
* * * *
37304894 TTAATTTATTTCAACTTATTTCAATATTG
1 TTAATTTATATAAATTTATTTAAATATTG
*
37304923 TTAATTTATTTAAATTTATTTAAATATT-
1 TTAATTTATATAAATTTATTTAAATATTG
*
37304951 TTAATTTATATATATTATATTT
1 TTAATTTATATAAATT-TATTT
37304973 TTTTCTTGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 14 0.32
29 30 0.68
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.59
Consensus pattern (29 bp):
TTAATTTATATAAATTTATTTAAATATTG
Found at i:37306554 original size:19 final size:18
Alignment explanation
Indices: 37306523--37306563 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
37306513 TGAATAATCT
37306523 TTAATTAACCTAAATTAA
1 TTAATTAACCTAAATTAA
* *
37306541 TTAAGTTAATCTAACTTAA
1 TTAA-TTAACCTAAATTAA
37306560 TTAA
1 TTAA
37306564 CATAATAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (18 bp):
TTAATTAACCTAAATTAA
Found at i:37308936 original size:15 final size:15
Alignment explanation
Indices: 37308918--37308953 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
37308908 CAGCCGTGTG
*
37308918 TGACACATGGCCAGA
1 TGACACACGGCCAGA
*
37308933 TGACACACGGCCAGG
1 TGACACACGGCCAGA
37308948 TGACAC
1 TGACAC
37308954 GACCGTGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.31, G:0.28, T:0.11
Consensus pattern (15 bp):
TGACACACGGCCAGA
Found at i:37317140 original size:14 final size:14
Alignment explanation
Indices: 37317121--37317147 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37317111 GTATATTTCC
37317121 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
37317135 TTTTCTTTTTTTT
1 TTTTCTTTTTTTT
37317148 AAAATTATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (14 bp):
TTTTCTTTTTTTTT
Found at i:37321774 original size:19 final size:19
Alignment explanation
Indices: 37321727--37321788 Score: 54
Period size: 19 Copynumber: 3.0 Consensus size: 19
37321717 TTACTTAACA
37321727 AATTATATAGAATTTTATAATAGT
1 AATTAT-TA-AATTTTAT-AT--T
37321751 AATTA-TAAATTTTGATATT
1 AATTATTAAATTTT-ATATT
*
37321770 AATTATTCAATTTTATATT
1 AATTATTAAATTTTATATT
37321789 TTAATTAGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
19 11 0.31
20 7 0.20
21 8 0.23
22 4 0.11
24 5 0.14
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (19 bp):
AATTATTAAATTTTATATT
Found at i:37332226 original size:3 final size:3
Alignment explanation
Indices: 37332218--37332246 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
37332208 ATGAATCTTG
37332218 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37332247 AAAAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37342804 original size:14 final size:14
Alignment explanation
Indices: 37342782--37342820 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
37342772 ATATATTATA
*
37342782 ATAAAATTAAATAT
1 ATAATATTAAATAT
37342796 ATAATATTATAATAT
1 ATAATATTA-AATAT
37342811 A-AATATTAAA
1 ATAATATTAAA
37342821 AAAATTTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 2 0.09
14 15 0.65
15 6 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATAATATTAAATAT
Found at i:37342807 original size:22 final size:21
Alignment explanation
Indices: 37342771--37342816 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
37342761 GCTTCATGTT
*
37342771 TATATATTATAATAAAATTAAA
1 TATATAATATAATAAAA-TAAA
* *
37342793 TATATAATATTATAATATAAA
1 TATATAATATAATAAAATAAA
37342814 TAT
1 TAT
37342817 TAAAAAAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TATATAATATAATAAAATAAA
Done.