Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 115 of 313
Found at i:37343505 original size:19 final size:20
Alignment explanation
Indices: 37343461--37343505 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
37343451 TTTTTATTAC
*
37343461 AATTTATGTGTTGATAAGTA
1 AATTTATGTGTTGAGAAGTA
37343481 AA-TTATGATGTTG-GAA-TA
1 AATTTATG-TGTTGAGAAGTA
37343499 AATTTAT
1 AATTTAT
37343506 AAATAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 4 0.18
19 11 0.50
20 7 0.32
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (20 bp):
AATTTATGTGTTGAGAAGTA
Found at i:37343781 original size:30 final size:30
Alignment explanation
Indices: 37343745--37343805 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
37343735 TAAATTTATT
37343745 TGAGAATGTGAGATTATGAGATAATTGGAA
1 TGAGAATGTGAGATTATGAGATAATTGGAA
37343775 TGAGAATGTGAGATTATGAGATAATTGGAA
1 TGAGAATGTGAGATTATGAGATAATTGGAA
37343805 T
1 T
37343806 ATTCTGAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.31
Consensus pattern (30 bp):
TGAGAATGTGAGATTATGAGATAATTGGAA
Found at i:37348318 original size:81 final size:81
Alignment explanation
Indices: 37348182--37348345 Score: 249
Period size: 81 Copynumber: 2.0 Consensus size: 81
37348172 GGAAAAGGGA
* * * * * *
37348182 ACTTAGATTAGCATAAGAGAAGAATGCAAGAGTTGGGAGAATGTGGAAATGTCTCTATTACTCAA
1 ACTTAGATTAGAACAAAAGAAGAATGCAAAAGTTGAGAGAATGTGGAAATATCTCTATTACTCAA
37348247 ATAAGCTAGCTTGGAT
66 ATAAGCTAGCTTGGAT
*
37348263 ACTTAGATTAGAACAAAAGAATAATGCAAAAGTTGAGAGAATGT-GAAAGTATCTCTATTACTCA
1 ACTTAGATTAGAACAAAAGAAGAATGCAAAAGTTGAGAGAATGTGGAAA-TATCTCTATTACTCA
37348327 AATAAGCTAGCTTGGAT
65 AATAAGCTAGCTTGGAT
37348344 AC
1 AC
37348346 AAAAGAGGAA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
80 4 0.05
81 71 0.95
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (81 bp):
ACTTAGATTAGAACAAAAGAAGAATGCAAAAGTTGAGAGAATGTGGAAATATCTCTATTACTCAA
ATAAGCTAGCTTGGAT
Found at i:37352684 original size:51 final size:51
Alignment explanation
Indices: 37352608--37352784 Score: 257
Period size: 51 Copynumber: 3.4 Consensus size: 51
37352598 TACACGGAAT
* *
37352608 CACTTATCATTTATCTCTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
37352659 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTAC
1 CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
*
37352709 CACTTATCACTTATCACTTGTCACTTGTCATTGATTAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTATCACTTGTCA-----C--TGATCAGATAAGTGTAGCTAAAGCTAC
37352767 CACTTATCACTTATCACT
1 CACTTATCACTTATCACT
37352785 AATCAAAAGT
Statistics
Matches: 115, Mismatches: 3, Indels: 9
0.91 0.02 0.07
Matches are distributed among these distances:
50 30 0.26
51 41 0.36
55 1 0.01
57 18 0.16
58 25 0.22
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.35
Consensus pattern (51 bp):
CACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:37369233 original size:6 final size:6
Alignment explanation
Indices: 37369222--37369248 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37369212 CTATTAACAC
37369222 GACTCG GACTCG GACTCG GACTCG GAC
1 GACTCG GACTCG GACTCG GACTCG GAC
37369249 GGATACACGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (6 bp):
GACTCG
Found at i:37369338 original size:40 final size:39
Alignment explanation
Indices: 37369284--37369418 Score: 114
Period size: 37 Copynumber: 3.4 Consensus size: 39
37369274 ACCAGTTTGG
*
37369284 CACCCAGTGCCTCATCGGATAATTCAAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGGATAATCCAAAGT-ATAAATTGA
* * * * *
37369324 CACCTAGTGTCTCATCGGTTGAA-CCGAAG--TAAATTGG
1 CACCCAGTGCCTCATCGGAT-AATCCAAAGTATAAATTGA
* * *
37369361 CACCTAGTGCCTCCTCGAATTAATCCAAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGGA-TAATCCAAAGTA-TAAATTGA
* *
37369402 AACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
37369419 ACTCGAAGTC
Statistics
Matches: 73, Mismatches: 16, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
37 24 0.33
38 6 0.08
40 21 0.29
41 22 0.30
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAATCCAAAGTATAAATTGA
Found at i:37370486 original size:43 final size:44
Alignment explanation
Indices: 37370406--37370500 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 44
37370396 TTTTTATTAT
*
37370406 TATTATAATATAATATAATATATATACTTAACATTTAAGTTTTAA
1 TATTATAATAT-ATATAATATATATACTTAACATTTAAATTTTAA
** *
37370451 TATTATAATAT-TATAATATATATTTTTTAAC-TTTAAATTTTTA
1 TATTATAATATATATAATATATA-TACTTAACATTTAAATTTTAA
*
37370494 TAATATA
1 TATTATA
37370501 TACACTTATG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
43 27 0.61
44 6 0.14
45 11 0.25
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (44 bp):
TATTATAATATATATAATATATATACTTAACATTTAAATTTTAA
Found at i:37378882 original size:18 final size:20
Alignment explanation
Indices: 37378850--37378887 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
37378840 GTTAATTTCA
*
37378850 ATTTTTTAATATTATTTAAT
1 ATTTTTTAATATTATGTAAT
37378870 ATTTTTT-AT-TTATGTAAT
1 ATTTTTTAATATTATGTAAT
37378888 TTTAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 2 0.12
20 7 0.41
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (20 bp):
ATTTTTTAATATTATGTAAT
Found at i:37382091 original size:126 final size:125
Alignment explanation
Indices: 37381871--37382257 Score: 455
Period size: 126 Copynumber: 3.1 Consensus size: 125
37381861 GCCAAGCAGT
*
37381871 AACTACTATAGAAAAAGAGCGTCCACGTG-G-G-----TTCAGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGT-ATTTTGCTGACAGTGCATCC
* * * * * * *
37381929 TGCTTGAAGTGTTTTTTATACTATTTTTTTAGAACCGTTTTCTCAAAATTATTTTTTTAAA
65 TGCTTGAAGCGTTTTTCACACTATTTTTTTATAACCGTCTTCTCAAAATTATTTTTTCAGA
* * * **
37381990 AACTACTGTAGAAAAAGAGTGTCCACGTGAGAGCTTTTTTTAGTGATTTTGCTGATAGTGCATTT
1 AACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGT-ATTTTGCTGACAGTGCATCC
* * *
37382055 TGCTTGAAGCGTCTTTCACACTATTTTTTTATAACCGTCTTCTCAAAATTATATTTTCAGG
65 TGCTTGAAGCGTTTTTCACACTATTTTTTTATAACCGTCTTCTCAAAATTATTTTTTCAGA
* * *
37382116 AACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTTCAGTACTTTTGCTAACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTA-TTTTGCTGACAGTGCATCC
* * * * * * * *
37382181 TACTCGAAGCATTTTTGACATTATCTTTTCATAACCGTCTTCTCAAAATTAATTTTTCAGA
65 TGCTTGAAGCGTTTTTCACACTATTTTTTTATAACCGTCTTCTCAAAATTATTTTTTCAGA
37382242 AACTACTGTAGAAAAA
1 AACTACTGTAGAAAAA
37382258 AAAAACAAAA
Statistics
Matches: 224, Mismatches: 36, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
119 27 0.12
120 1 0.00
121 1 0.00
125 1 0.00
126 194 0.87
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (125 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTATTTTGCTGACAGTGCATCCT
GCTTGAAGCGTTTTTCACACTATTTTTTTATAACCGTCTTCTCAAAATTATTTTTTCAGA
Found at i:37382357 original size:27 final size:31
Alignment explanation
Indices: 37382325--37382392 Score: 81
Period size: 33 Copynumber: 2.3 Consensus size: 31
37382315 TACAAAAACC
37382325 TTAAAAAC-TAAACAC-AA-AATT-ATTTTT
1 TTAAAAACATAAACACTAATAATTAATTTTT
*
37382352 TTAAAAACATAAACCCTAATTTAATTAATTTTT
1 TTAAAAACATAAACACTAA--TAATTAATTTTT
37382385 TTAAAAAC
1 TTAAAAAC
37382393 CCTAAACCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
27 8 0.24
28 6 0.18
29 2 0.06
32 4 0.12
33 14 0.41
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (31 bp):
TTAAAAACATAAACACTAATAATTAATTTTT
Found at i:37382399 original size:34 final size:34
Alignment explanation
Indices: 37382342--37382452 Score: 154
Period size: 34 Copynumber: 3.3 Consensus size: 34
37382332 CTAAACACAA
*
37382342 AATT-ATTTTTTTAAAAA-CATAAACCCTAATTT
1 AATTAATTTTTTTAAAAACCCTAAACCCTAATTT
*
37382374 AATTAATTTTTTTAAAAACCCTAAACCTTAATTT
1 AATTAATTTTTTTAAAAACCCTAAACCCTAATTT
** * *
37382408 AATTAATTTACTTAAAACCCCTAAAACCTAATTT
1 AATTAATTTTTTTAAAAACCCTAAACCCTAATTT
37382442 AATTAATTTTT
1 AATTAATTTTT
37382453 AAAAAATTTC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
32 4 0.06
33 13 0.19
34 51 0.75
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.43
Consensus pattern (34 bp):
AATTAATTTTTTTAAAAACCCTAAACCCTAATTT
Found at i:37385063 original size:22 final size:21
Alignment explanation
Indices: 37385038--37385085 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
37385028 TTTGCCCGGG
* * *
37385038 CCAAAATAAGACATAAATAAAA
1 CCAAAAGAAAACA-AAAAAAAA
*
37385060 CCAATAGAAAACAAAAAAAAA
1 CCAAAAGAAAACAAAAAAAAA
37385081 CCAAA
1 CCAAA
37385086 GTCTAAAATA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.71, C:0.17, G:0.04, T:0.08
Consensus pattern (21 bp):
CCAAAAGAAAACAAAAAAAAA
Found at i:37387410 original size:87 final size:87
Alignment explanation
Indices: 37387264--37387702 Score: 725
Period size: 87 Copynumber: 5.0 Consensus size: 87
37387254 ATCAGTGAAA
* * * * *
37387264 ATCGAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGATAGTTAAAGATAGCAGATCTTACTT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCT
*
37387329 TTCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
*
37387351 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCT
37387416 TCCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* *
37387438 ATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCT
37387503 TCCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
*
37387525 ATCAAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCT
37387590 TCCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* * * *
37387612 ATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGATTAAAGATAGCAGATCTTGCCC
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCT
** *
37387677 TCCTGCGTCGACAGTGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
37387699 ATCG
1 ATCG
37387703 GAGATTACAA
Statistics
Matches: 335, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 335 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (87 bp):
ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCT
TCCTGCGTTAACAGCGAAGCAG
Found at i:37387945 original size:41 final size:40
Alignment explanation
Indices: 37387860--37387945 Score: 91
Period size: 41 Copynumber: 2.1 Consensus size: 40
37387850 CCTTGAGATT
* * * * *
37387860 ACAGTAGAGTGGATTAAAAAGATCTTATCTCTCTGAAGTT
1 ACAGTAGAGTGGATCAAAAAGATCTTATCCCCCTAAAGTC
** *
37387900 ACAGTAGAGTGGATCACATCAGGTCTTATCCCCCTAAAGTC
1 ACAGTAGAGTGGATCA-AAAAGATCTTATCCCCCTAAAGTC
37387941 ACAGT
1 ACAGT
37387946 GGGGCAGACT
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
40 15 0.41
41 22 0.59
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (40 bp):
ACAGTAGAGTGGATCAAAAAGATCTTATCCCCCTAAAGTC
Found at i:37388062 original size:44 final size:44
Alignment explanation
Indices: 37387969--37388063 Score: 102
Period size: 44 Copynumber: 2.2 Consensus size: 44
37387959 GAAACAAATG
* * * *
37387969 TTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAATTCGATAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAATAATC
* * * *
37388013 CTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGT-AATAGTTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAATA-ATC
37388057 TTATCTC
1 TTATCTC
37388064 TCTTGCCGAC
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
43 3 0.07
44 38 0.93
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAATAATC
Found at i:37389027 original size:20 final size:20
Alignment explanation
Indices: 37388983--37389027 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
37388973 TGAGCTCTCT
37388983 GTTTTTTTATTTTTCTTTTA
1 GTTTTTTTATTTTTCTTTTA
* *
37389003 -TTTTTTCTTTTTTTCTTTTC
1 GTTTTTT-TATTTTTCTTTTA
37389023 GTTTT
1 GTTTT
37389028 GAAAAGTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 6 0.29
20 11 0.52
21 4 0.19
ACGTcount: A:0.04, C:0.09, G:0.04, T:0.82
Consensus pattern (20 bp):
GTTTTTTTATTTTTCTTTTA
Found at i:37391529 original size:18 final size:18
Alignment explanation
Indices: 37391508--37391542 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37391498 TTCTTTTTCT
* *
37391508 TTTTTTTTAATTTTCATG
1 TTTTCTTTAACTTTCATG
37391526 TTTTCTTTAACTTTCAT
1 TTTTCTTTAACTTTCAT
37391543 CGTTGATCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.11, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTCTTTAACTTTCATG
Found at i:37391915 original size:71 final size:71
Alignment explanation
Indices: 37391796--37392009 Score: 288
Period size: 71 Copynumber: 3.0 Consensus size: 71
37391786 TCGGGTTCCG
* * * * * *
37391796 GTTAGTTAGGTAGTTAATTAATGGTAGAATTATATAATTTAGTACTTGTAATTATGGATTCTTAT
1 GTTAGTTA-GTAGTTAATTAGTTGTAGAATTATTTAATTTAGTGCTTGTAATTATTGATTCTGAT
37391861 TGGAATT
65 TGGAATT
* *
37391868 GTTAGTTAGTAGTTAACTAGTTGTAGAATTATTTAGTTTAGTGCTTGTAATTATTGATTCTGATT
1 GTTAGTTAGTAGTTAATTAGTTGTAGAATTATTTAATTTAGTGCTTGTAATTATTGATTCTGATT
*
37391933 GCAATT
66 GGAATT
* * * *
37391939 GCTAGTTA--AGTTAATTAGTTGTAGAGTTATTCAATTTCGTGCTTGTAATTATTGATTCTGATT
1 GTTAGTTAGTAGTTAATTAGTTGTAGAATTATTTAATTTAGTGCTTGTAATTATTGATTCTGATT
37392002 GGAATT
66 GGAATT
37392008 GT
1 GT
37392010 CGATTTAAGT
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
69 56 0.45
71 61 0.49
72 8 0.06
ACGTcount: A:0.28, C:0.05, G:0.20, T:0.47
Consensus pattern (71 bp):
GTTAGTTAGTAGTTAATTAGTTGTAGAATTATTTAATTTAGTGCTTGTAATTATTGATTCTGATT
GGAATT
Found at i:37393816 original size:64 final size:64
Alignment explanation
Indices: 37393710--37393837 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
37393700 GAAAACGTTT
37393710 AATGATTTGCTTGGTGTGCCGATAATGGAGACCTTTCACTGTCATTGGAAAAGTCCCTAGTTCA
1 AATGATTTGCTTGGTGTGCCGATAATGGAGACCTTTCACTGTCATTGGAAAAGTCCCTAGTTCA
*
37393774 AATGGTTTGCTTGGTGTGCCGATAATGGAGACCTTTCACTGTCATTGGAAAAGTCCCTAGTTCA
1 AATGATTTGCTTGGTGTGCCGATAATGGAGACCTTTCACTGTCATTGGAAAAGTCCCTAGTTCA
37393838 TCCTCTTTCT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (64 bp):
AATGATTTGCTTGGTGTGCCGATAATGGAGACCTTTCACTGTCATTGGAAAAGTCCCTAGTTCA
Found at i:37402191 original size:21 final size:21
Alignment explanation
Indices: 37402166--37402228 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
37402156 CAATAGTCTA
37402166 ACAAGACAATCAATTTGCAAG
1 ACAAGACAATCAATTTGCAAG
** *
37402187 ACAAG-GTAT--A-TTCCAA-
1 ACAAGACAATCAATTTGCAAG
37402203 ACAAGACAATCAATTTGCAAG
1 ACAAGACAATCAATTTGCAAG
37402224 ACAAG
1 ACAAG
37402229 GTATATTCCA
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
16 5 0.16
17 7 0.23
18 1 0.03
19 1 0.03
20 7 0.23
21 10 0.32
ACGTcount: A:0.48, C:0.19, G:0.14, T:0.19
Consensus pattern (21 bp):
ACAAGACAATCAATTTGCAAG
Found at i:37402206 original size:37 final size:37
Alignment explanation
Indices: 37402165--37402248 Score: 159
Period size: 37 Copynumber: 2.3 Consensus size: 37
37402155 TCAATAGTCT
37402165 AACAAGACAATCAATTTGCAAGACAAGGTATATTCCA
1 AACAAGACAATCAATTTGCAAGACAAGGTATATTCCA
37402202 AACAAGACAATCAATTTGCAAGACAAGGTATATTCCA
1 AACAAGACAATCAATTTGCAAGACAAGGTATATTCCA
*
37402239 AACAAAACAA
1 AACAAGACAA
37402249 AGAAATTTGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.50, C:0.19, G:0.12, T:0.19
Consensus pattern (37 bp):
AACAAGACAATCAATTTGCAAGACAAGGTATATTCCA
Found at i:37411074 original size:36 final size:37
Alignment explanation
Indices: 37411008--37411080 Score: 139
Period size: 36 Copynumber: 2.0 Consensus size: 37
37410998 GATTCTCAAT
37411008 CCTTTTTCATTTTTCATATTTTTTTCTTAAAATTTCA
1 CCTTTTTCATTTTTCATATTTTTTTCTTAAAATTTCA
37411045 CCTTTTTCATTTTTCATA-TTTTTTCTTAAAATTTCA
1 CCTTTTTCATTTTTCATATTTTTTTCTTAAAATTTCA
37411081 TTTTCTTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 18 0.50
37 18 0.50
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.62
Consensus pattern (37 bp):
CCTTTTTCATTTTTCATATTTTTTTCTTAAAATTTCA
Found at i:37414530 original size:12 final size:12
Alignment explanation
Indices: 37414513--37414537 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37414503 TCAAAAAAGC
37414513 CCCTAAATTTCT
1 CCCTAAATTTCT
37414525 CCCTAAATTTCT
1 CCCTAAATTTCT
37414537 C
1 C
37414538 AAAGCTCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (12 bp):
CCCTAAATTTCT
Found at i:37418538 original size:15 final size:15
Alignment explanation
Indices: 37418517--37418556 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
37418507 AATAAAGTAT
37418517 ATTAAGTAATGCAAC
1 ATTAAGTAATGCAAC
*
37418532 GTTAAGTAATGCAAC
1 ATTAAGTAATGCAAC
37418547 ATTAAGTAAT
1 ATTAAGTAAT
37418557 AACAATATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (15 bp):
ATTAAGTAATGCAAC
Found at i:37420123 original size:125 final size:126
Alignment explanation
Indices: 37419866--37420385 Score: 715
Period size: 125 Copynumber: 4.2 Consensus size: 126
37419856 TAAGGCCAAA
* **
37419866 CAGGAACTATTGTAGAAAAAGATAGTCCACGTGGGAG-TTTTTTCAGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGC
*
37419930 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
**
37419991 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCCTTTTTCAGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGC
* *
37420056 ATCTTGCTTTAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTA-TTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * *
37420116 CAAGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAAATTTACTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGC
* * * * * *
37420181 ATCCTACTTGAAGCATTTTTGAAATTA-TTTTTCAGAACAGTTTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* ** * * *
37420241 CAGGAACTACTGTAGAAAAATAGCGTCCACGT-GGAGTTTTTTTCAGTAATTTTTATAATAGTGT
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGC
* * * ** * *
37420305 ATCCTGCTTGAAGCGTTTTTAACATTATCTTTTCAGAGTCGTCTTCTCAAAATTAATTATT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * *
37420366 CTGAAACTACTGTAAAAAAA
1 CAGGAACTACTGTAGAAAAA
37420386 ACAAAATCTT
Statistics
Matches: 350, Mismatches: 42, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
124 74 0.21
125 198 0.57
126 78 0.22
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (126 bp):
CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:37420562 original size:34 final size:34
Alignment explanation
Indices: 37420462--37420562 Score: 143
Period size: 34 Copynumber: 3.0 Consensus size: 34
37420452 AAAAACTAAC
*
37420462 CCTAATTTAATTAATTTTCTTAAAAACTCT-AAA
1 CCTAATTTAATTAATTTTTTTAAAAACTCTAAAA
*
37420495 CCTTAATTTAATTAATTTATTTAAAACAC-CTAAAA
1 CC-TAATTTAATTAATTTTTTTAAAA-ACTCTAAAA
*
37420530 CCTAGTTTAATTAATTTTTTTAAAAACTCTAAA
1 CCTAATTTAATTAATTTTTTTAAAAACTCTAAA
37420563 CTCTGGTTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
33 4 0.07
34 49 0.82
35 7 0.12
ACGTcount: A:0.43, C:0.14, G:0.01, T:0.43
Consensus pattern (34 bp):
CCTAATTTAATTAATTTTTTTAAAAACTCTAAAA
Found at i:37420572 original size:34 final size:33
Alignment explanation
Indices: 37420439--37420572 Score: 135
Period size: 34 Copynumber: 3.9 Consensus size: 33
37420429 CTAAACACAA
** * *
37420439 AATTATTTTTAAAAAAAACTAACCCTAATTTAATT
1 AATT-TTTTT-AAAAACTCTAAACCTAGTTTAATT
* *
37420474 AATTTTCTTAAAAACTCTAAACCTTAATTTAATT
1 AATTTTTTTAAAAACTCTAAACC-TAGTTTAATT
*
37420508 AATTTATTTAAAACAC-CTAAAACCTAGTTTAATT
1 AATTTTTTTAAAA-ACTCT-AAACCTAGTTTAATT
*
37420542 AATTTTTTTAAAAACTCTAAACTCTGGTTTA
1 AATTTTTTTAAAAACTCTAAAC-CTAGTTTA
37420573 TTTTTAAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
33 17 0.20
34 57 0.67
35 11 0.13
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.42
Consensus pattern (33 bp):
AATTTTTTTAAAAACTCTAAACCTAGTTTAATT
Found at i:37422244 original size:82 final size:83
Alignment explanation
Indices: 37422086--37422251 Score: 192
Period size: 82 Copynumber: 2.0 Consensus size: 83
37422076 TTAATGCGTA
** * * *
37422086 AATTAAATTCCATTAATTAATGCAATTAAAGCTGCACATGGGCATAAAATTGCCATTGGAAAGGC
1 AATTAAATTCCATTAATTAATGCAATTAAAGCTGCACATAAGAATAAAATTGCCATTGAAAAGAC
**
37422151 GGAATGAGTTTT-ATTGC
66 AAAATGAGTTTTAATTGC
* ** * *
37422168 AATTAAATTCCATTAATTACTGCAATTTTAGCTGTATATAAGAATAAAATTG-CAGTTGAAAAGA
1 AATTAAATTCCATTAATTAATGCAATTAAAGCTGCACATAAGAATAAAATTGCCA-TTGAAAAGA
*
37422232 CAAAATGGGTTTTAATTGC
65 CAAAATGAGTTTTAATTGC
37422251 A
1 A
37422252 GCAATGAATG
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
81 2 0.03
82 61 0.88
83 6 0.09
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (83 bp):
AATTAAATTCCATTAATTAATGCAATTAAAGCTGCACATAAGAATAAAATTGCCATTGAAAAGAC
AAAATGAGTTTTAATTGC
Found at i:37427620 original size:3 final size:3
Alignment explanation
Indices: 37427612--37427641 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
37427602 ATATTAAAAA
37427612 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37427642 ATAATTCGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:37429525 original size:24 final size:25
Alignment explanation
Indices: 37429498--37429553 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
37429488 ACCATATTTA
37429498 ATTTAGTATTTA-AAAATTATATAT
1 ATTTAGTATTTATAAAATTATATAT
** *
37429522 ATTTTTTATTTATTAAAATTCTATAT
1 ATTTAGTATTTA-TAAAATTATATAT
*
37429548 AATTAG
1 ATTTAG
37429554 GCCATATAAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
24 10 0.42
26 14 0.58
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (25 bp):
ATTTAGTATTTATAAAATTATATAT
Found at i:37430097 original size:84 final size:88
Alignment explanation
Indices: 37429929--37430097 Score: 215
Period size: 84 Copynumber: 2.0 Consensus size: 88
37429919 TAATTTTTCC
*
37429929 TTTTCATTTTTAGGAGAGTTAAAGGGCAATTTTACTATATATTAATTTTTAATTTCTTTATTTAT
1 TTTTCATTTTTAGGAGAGTTAAAGGGCAATTTTACTATATATTAATTTTTAA-TTCTTTATCTAT
37429994 TTATAAGAGAACTGAATTGAAAAA
65 TTATAAGAGAACTGAATTGAAAAA
* * * *
37430018 TTTTC-TTTTT-GGAG-GTTGAAGTGTAATTTTACTATATATATTATTTTATAA-T-TTT-TCTA
1 TTTTCATTTTTAGGAGAGTTAAAGGGCAATTTTACTATATAT-TAATTTT-TAATTCTTTATCTA
*
37430077 TTTATAAGAGAATTGAATTGA
64 TTTATAAGAGAACTGAATTGA
37430098 TTTTTTTTAG
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
84 23 0.32
85 3 0.04
86 23 0.32
87 10 0.14
88 8 0.11
89 5 0.07
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (88 bp):
TTTTCATTTTTAGGAGAGTTAAAGGGCAATTTTACTATATATTAATTTTTAATTCTTTATCTATT
TATAAGAGAACTGAATTGAAAAA
Found at i:37432282 original size:7 final size:7
Alignment explanation
Indices: 37432261--37432295 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
37432251 CCTTCTCCAG
*
37432261 TTCATTG
1 TTCATTT
*
37432268 TTCTTTT
1 TTCATTT
37432275 TTCATTT
1 TTCATTT
37432282 TTCATTT
1 TTCATTT
37432289 TTCATTT
1 TTCATTT
37432296 CATTTCAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.11, C:0.14, G:0.03, T:0.71
Consensus pattern (7 bp):
TTCATTT
Found at i:37436223 original size:43 final size:43
Alignment explanation
Indices: 37436159--37436383 Score: 256
Period size: 43 Copynumber: 5.2 Consensus size: 43
37436149 ATGGTACTTT
* * * *
37436159 TAGCGGCGTTTGT-AATCAAAGCGTCGCTAAATGTCTTGAGCTA
1 TAGCGGCGTTTGTGAA-AAAAGCGCCGCTAAAGGTCTTGATCTA
*
37436202 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
37436245 TAGCGGCGTTTGTGAAAGATGCGTCGCTAAAGGT-TCTGATTTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCT-TGATCTA
* * * * * *
37436288 TAGCAGCGTTTTTGTAAAAAGAGCCGCTAAAGGTCCTAATCTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * *
37436331 TAGCGGCGTTTTTGTAAAAAGCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
37436374 TAGCGGCGTT
1 TAGCGGCGTT
37436384 GACAATAGCG
Statistics
Matches: 158, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
42 1 0.01
43 155 0.98
44 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:37438823 original size:31 final size:30
Alignment explanation
Indices: 37438750--37438826 Score: 88
Period size: 29 Copynumber: 2.6 Consensus size: 30
37438740 AAGTTGTGGA
* *
37438750 TTTAGT-CTCTGTACTTTTATTTGGTCAAT
1 TTTAGTCCTCTGTACTTTTAATTGGTCAAC
37438779 TTTAGTCC-CTGTACTTTTCAAATTGGT-AAC
1 TTTAGTCCTCTGTACTTTT--AATTGGTCAAC
*
37438809 TTTAGTCCTTTGTACTTT
1 TTTAGTCCTCTGTACTTT
37438827 ATTTATTTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 16 0.39
30 11 0.27
31 14 0.34
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (30 bp):
TTTAGTCCTCTGTACTTTTAATTGGTCAAC
Found at i:37439491 original size:41 final size:41
Alignment explanation
Indices: 37439434--37439518 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
37439424 TGATTAATGA
37439434 AAATTCATAATTAACTAATAATATTAACACTTAAATACATT
1 AAATTCATAATTAACTAATAATATTAACACTTAAATACATT
37439475 AAATTCATAATTAACTAATAATATTAACACTTAAATACATT
1 AAATTCATAATTAACTAATAATATTAACACTTAAATACATT
37439516 AAA
1 AAA
37439519 AAATTTAAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (41 bp):
AAATTCATAATTAACTAATAATATTAACACTTAAATACATT
Found at i:37444665 original size:3 final size:3
Alignment explanation
Indices: 37444659--37444700 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
37444649 ATAATAATAA
* *
37444659 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37444701 AATTGCCCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:37444735 original size:20 final size:20
Alignment explanation
Indices: 37444710--37444753 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
37444700 TAATTGCCCT
* *
37444710 TATATATATACGTTTTTTTA
1 TATATACATACATTTTTTTA
*
37444730 TATATACATATATTTTTTTA
1 TATATACATACATTTTTTTA
37444750 TATA
1 TATA
37444754 CTTACACACA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (20 bp):
TATATACATACATTTTTTTA
Found at i:37444745 original size:18 final size:16
Alignment explanation
Indices: 37444712--37444754 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
37444702 ATTGCCCTTA
*
37444712 TATATATACGTTTTTT
1 TATATATACATTTTTT
37444728 TATATATACATATATTTT
1 TATATATACAT-T-TTTT
*
37444746 TTTATATAC
1 TATATATAC
37444755 TTACACACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 10 0.43
17 1 0.04
18 12 0.52
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (16 bp):
TATATATACATTTTTT
Found at i:37444788 original size:26 final size:24
Alignment explanation
Indices: 37444728--37444788 Score: 61
Period size: 26 Copynumber: 2.5 Consensus size: 24
37444718 TACGTTTTTT
* *
37444728 TATATATACATATATTTTTTTATA
1 TATATATACACATATTTTTTAATA
*
37444752 TACT-TACACACATACTTTTTGTAATA
1 TA-TATATACACATA-TTTTT-TAATA
37444778 TATATATACAC
1 TATATATACAC
37444789 TTACATATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
24 10 0.34
25 7 0.24
26 12 0.41
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.48
Consensus pattern (24 bp):
TATATATACACATATTTTTTAATA
Found at i:37444897 original size:39 final size:39
Alignment explanation
Indices: 37444835--37444912 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 39
37444825 TATATGTGTT
* * *
37444835 CTTTATATTTTATGATTCATACATATATCTATATATATA
1 CTTTATATTTTATGATACATACATACATATATATATATA
* ** *
37444874 CTTTTTATTTTATGATAGTTACATACATATATATGTATA
1 CTTTATATTTTATGATACATACATACATATATATATATA
37444913 TGCTTATTTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (39 bp):
CTTTATATTTTATGATACATACATACATATATATATATA
Found at i:37445546 original size:111 final size:110
Alignment explanation
Indices: 37445248--37445781 Score: 788
Period size: 111 Copynumber: 4.8 Consensus size: 110
37445238 TATTTCCAAT
*
37445248 TAAGGCAATGCTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTT
1 TAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTT
***
37445313 TCTCGTTCAACCAAATGGCTAAATATCCTTTTAAATTTTTTTTTAAAA
65 TCTCGTTCAACCAAATGGCTAAATATCCTTTTAAA-AAATTTTT-AAA
*
37445361 TAAGGCAATGTTTTGCGTTTGAAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTT
1 TAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTT
37445426 CTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTTTAAA
66 CTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAA-TTTTTAAA
*
37445472 TAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTTGATTTTT
1 TAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTT
* *
37445537 CTCGTTCAACCAAATGACTTAATATCCTTTTAAAAAATTTTT-AA
66 CTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTTAAA
*
37445581 TAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACAAGCCCTAAGGTGCTGGGTGTCGATTTT
1 TAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTT
* * **
37445646 TCTCATTCAACCAAATAGCTAAATATCCTTTTAAAAAATTTCAAAA
65 TCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTTAAA
* * * * * * *
37445692 TAAGACAATGTTTCGCGTTTGGAAATTTGAG-GAACGTACCCTAAGGTGCTGGGTTTCGA--TTT
1 TAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTT
* * *
37445754 CTCGTTTAACCAAATAGCCAAATATCCT
66 CTCGTTCAACCAAATGGCTAAATATCCT
37445782 CTCGAATTTC
Statistics
Matches: 390, Mismatches: 28, Indels: 12
0.91 0.07 0.03
Matches are distributed among these distances:
107 28 0.07
109 45 0.12
110 94 0.24
111 121 0.31
112 83 0.21
113 19 0.05
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (110 bp):
TAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTT
CTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTTAAA
Found at i:37449140 original size:10 final size:9
Alignment explanation
Indices: 37449121--37449151 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
37449111 GACTCGAAAG
37449121 AAAAATAAA
1 AAAAATAAA
37449130 AAAAATAAA
1 AAAAATAAA
37449139 AAAAATCAAA
1 AAAAAT-AAA
37449149 AAA
1 AAA
37449152 TCATAAGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 15 0.71
10 6 0.29
ACGTcount: A:0.87, C:0.03, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAATAAA
Found at i:37449168 original size:6 final size:6
Alignment explanation
Indices: 37449159--37449197 Score: 53
Period size: 6 Copynumber: 6.3 Consensus size: 6
37449149 AAATCATAAG
37449159 AGAAAA AGAAAGA AGAAAA A-AGAAA AGAAAA AGAAAA AG
1 AGAAAA AGAAA-A AGAAAA AGA-AAA AGAAAA AGAAAA AG
37449198 GAGAAGTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 1 0.03
6 22 0.73
7 7 0.23
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:37450417 original size:44 final size:44
Alignment explanation
Indices: 37450319--37450432 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 44
37450309 AAAAAGGGTG
* * *
37450319 GCTCAAATTTTGGAACAAAATGGGGCA-CAAAGTGGTCAGAGCA
1 GCTCAAATTTTGGATCAAATTGGGGCATCAAAGTGATCAGAGCA
* * ****
37450362 ACTTAAATTTTGGATCAAATTGGGGCATGGTGGTGATCAGAGCA
1 GCTCAAATTTTGGATCAAATTGGGGCATCAAAGTGATCAGAGCA
* *
37450406 GCTCAAATTTT-GATCAGATCGGGGCAT
1 GCTCAAATTTTGGATCAAATTGGGGCAT
37450433 ATGATGATCT
Statistics
Matches: 57, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
43 37 0.65
44 20 0.35
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (44 bp):
GCTCAAATTTTGGATCAAATTGGGGCATCAAAGTGATCAGAGCA
Found at i:37451828 original size:150 final size:150
Alignment explanation
Indices: 37451556--37451834 Score: 405
Period size: 150 Copynumber: 1.9 Consensus size: 150
37451546 AAAACCATAG
* * * *
37451556 ATTGCAATTCAAAATATTGAAGCCACAACGGTAAATCTCACCTCCCTGGCGATGCAACAGAACAG
1 ATTGCAATTCAAAAGATTAAAGCCACAACGGCAAATCTCACCTCCCTAGCGATGCAACAGAACAG
* ** * *
37451621 ATCGAAGCTACGATGGCGAATCTCACTTCCCCAACATTGCAATTTAAAAGATTGAAGCTACAACA
66 ATCGAAGCTACAACAGCGAATCTCACTTCCCCAACATTGCAATTTAAAAGATCGAAGCCACAACA
37451686 GCGAATTTTACTTCCCTAAC
131 GCGAATTTTACTTCCCTAAC
* ** * *
37451706 ATTGCAATTCAAAAGATTAAAGTCACAACGGCAAATCTCATTTCCCTAGCGATGCAGCGGAACAG
1 ATTGCAATTCAAAAGATTAAAGCCACAACGGCAAATCTCACCTCCCTAGCGATGCAACAGAACAG
* * *
37451771 ATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAAC
66 ATCGAAGCTACAACAGCGAATCTCACTTCCCCAACATTGCAATTTAAAAGATCGAAGCCACAAC
37451835 GGTGAATCTT
Statistics
Matches: 112, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
150 112 1.00
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (150 bp):
ATTGCAATTCAAAAGATTAAAGCCACAACGGCAAATCTCACCTCCCTAGCGATGCAACAGAACAG
ATCGAAGCTACAACAGCGAATCTCACTTCCCCAACATTGCAATTTAAAAGATCGAAGCCACAACA
GCGAATTTTACTTCCCTAAC
Found at i:37451844 original size:50 final size:50
Alignment explanation
Indices: 37451619--37452353 Score: 456
Period size: 50 Copynumber: 14.7 Consensus size: 50
37451609 GCAACAGAAC
* * * * *
37451619 AGATCGAAGCTACGATGGCGAATCTCACTTCCCCAACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * ** *
37451669 AGATTGAAGCTACAACAGCGAATTTTACTTCCCTAACATTGCAATTCAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * * **** *
37451719 AGATTAAAG-TCACAACGGCAAATCTCA-TTTCCCTAGCGA-TGCAGCGGAAC
1 AGATTGAAGCT-ACAACGGCGAATCTTACTTCCCCGA-C-ATTGCAATTTAAA
*
37451769 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * * * * * * *
37451819 AGATCGAAGCCACAACGGTGAATCTTATTTCCCAGGCAGTGCAGTTGAAT
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * *
37451869 AGATTGAAGCTACAACAGCGGATCTTGCTTCCTCGACATAGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * * * * * * * *
37451919 AGATCGAAG-AATTAACGGTGAATCTTATTTCCCAGGCAGTGCAGTTGAAC
1 AGATTGAAGCTA-CAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * *
37451969 AGATTGAAGCTACAACAGCGGATCTTGCTTCCTCGATATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* ** * * * * * * *
37452019 AGATCGAAGCCCCAACAGTGAATCTTATTTCCCAGGCAGTGC-AGTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * **
37452068 CAGATTGAAGCTACAACAGCGGATCTTGCTTCCTTGACATTGCAATTTAAA
1 -AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * * * ****
37452119 AGATCGAAGCCACAACGGTGAATCTTACTTCTCAGGCGA-TGCAGCGGAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGAC-ATTGCAATTTAAA
* * * * *
37452169 AGATTGAAGCTACGACGGCAAATCTCACTTCCCTGACATTGCAACTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * **** **** *
37452219 AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGTGGTGCAGCGGAAT
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * *
37452269 GGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACAGTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * *
37452319 AGATTGAAGCCACAACGGTGAATTTTACTCCCCCG
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCG
37452354 GCGGTGCAGC
Statistics
Matches: 497, Mismatches: 176, Indels: 24
0.71 0.25 0.03
Matches are distributed among these distances:
49 15 0.03
50 466 0.94
51 16 0.03
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTCCCCGACATTGCAATTTAAA
Found at i:37452347 original size:100 final size:100
Alignment explanation
Indices: 37451669--37452385 Score: 794
Period size: 100 Copynumber: 7.2 Consensus size: 100
37451659 GCAATTTAAA
* ** * ** *
37451669 AGATTGAAGCTACAACAGCGAATTTTACTTCCCTAACATTGCAATTCAAAAGATTAAAGTCACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAA
** * *
37451734 CGGCAAATCTCATTTCCCTA-GC-GATGCAGCGGAAC
66 CGGTGAATCTTACTTCCC-AGGCAG-TGCAGCGGAAC
37451769 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAA
* ** *
37451834 CGGTGAATCTTATTTCCCAGGCAGTGCAGTTGAAT
66 CGGTGAATCTTACTTCCCAGGCAGTGCAGCGGAAC
* * * * * *
37451869 AGATTGAAGCTACAACAGCGGATCTTGCTTCCTCGACATAGCAATTTAAAAGATCGAAG-AATTA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCA-CA
* **
37451933 ACGGTGAATCTTATTTCCCAGGCAGTGCAGTTGAAC
65 ACGGTGAATCTTACTTCCCAGGCAGTGCAGCGGAAC
* * * * *
37451969 AGATTGAAGCTACAACAGCGGATCTTGCTTCCTCGATATTGCAATTTAAAAGATCGAAGCCCCAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAA
* * ***
37452034 CAGTGAATCTTATTTCCCAGGCAGTGCAGTTAAAC
66 CGGTGAATCTTACTTCCCAGGCAGTGCAGCGGAAC
* * **
37452069 AGATTGAAGCTACAACAGCGGATCTTGCTTCCTTGACATTGCAATTTAAAAGATCGAAGCCACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAA
* *
37452134 CGGTGAATCTTACTTCTCAGGC-GATGCAGCGGAAA
66 CGGTGAATCTTACTTCCCAGGCAG-TGCAGCGGAAC
* * * * * * *
37452169 AGATTGAAGCTACGACGGCAAATCTCACTTCCCTGACATTGCAACTTAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAA
* ** *
37452234 CGGCGAATCTTACTTCCCAGGTGGTGCAGCGGAAT
66 CGGTGAATCTTACTTCCCAGGCAGTGCAGCGGAAC
* * ** * * *
37452269 GGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACAGTGCAATTTAAAAGATTGAAGCCACAA
1 AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAA
* * * * **
37452334 CGGTGAATTTTACTCCCCCGGCGGTGCAGCAAAAC
66 CGGTGAATCTTACTTCCCAGGCAGTGCAGCGGAAC
37452369 AGATTGAAGCTACAACA
1 AGATTGAAGCTACAACA
37452386 ATTGAAGATT
Statistics
Matches: 543, Mismatches: 68, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
99 3 0.01
100 538 0.99
101 2 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (100 bp):
AGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACATTGCAATTTAAAAGATCGAAGCCACAA
CGGTGAATCTTACTTCCCAGGCAGTGCAGCGGAAC
Found at i:37452361 original size:50 final size:50
Alignment explanation
Indices: 37451558--37452384 Score: 321
Period size: 50 Copynumber: 16.5 Consensus size: 50
37451548 AACCATAGAT
* ** * * * *
37451558 TGCAA-TTCAAAATATTGAAGCCACAACGGTAAATCTCACCTCCCTGGCGA
1 TGCAACTT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
** * * * * * * * **
37451608 TGCAACAGAACAGATCGAAGCTACGATGGCGAATCTCACTTCCCCA-ACAT
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTT-CCCAGGCGG
* * * * * **
37451658 TGCAATTTAAAAGATTGAAGCTACAACAGCGAATTTTACTTCCCTA-ACAT
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCC-AGGCGG
* * * * * *
37451708 TGCAA-TTCAAAAGATTAAAGTCACAACGGCAAATCTCATTTCCCTA-GCGA
1 TGCAACTT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCCC-AGGCGG
* ** * * * * * **
37451758 TGCAGCGGAACAGATTGAAGCTACAACAGCGAATCTTACTTCCCCGACAT
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
* * * * *
37451808 TGCAATTTAAAAGATCGAAGCCACAACGGTGAATCTTATTTCCCAGGCAG
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
* * * * * * * *
37451858 TGC-AGTTGAATAGATTGAAGCTACAACAGCGGATCTTGCTTCCTC-GAC-A
1 TGCAACTT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCC-CAGGCGG
* * * * * * *
37451907 TAGCAATTTAAAAGATCGAAG-AATTAACGGTGAATCTTATTTCCCAGGCAG
1 T-GCAACTTAAAAGATTGAAGCCA-CAACGGCGAATCTTACTTCCCAGGCGG
* * * * * * ****
37451958 TGC-AGTTGAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCTC-GATAT
1 TGCAACTT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCC-CAGGCGG
* * * * * * *
37452008 TGCAATTTAAAAGATCGAAGCCCCAACAGTGAATCTTATTTCCCAGGCAG
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
* * * * * ** * **
37452058 TGC-AGTTAAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCTTGACAT
1 TGCAACTTAAA-AGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
* * * * *
37452108 TGCAATTTAAAAGATCGAAGCCACAACGGTGAATCTTACTTCTCAGGCGA
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
* ** * * * * * * **
37452158 TGCAGCGGAAAAGATTGAAGCTACGACGGCAAATCTCACTTCCCTGACAT
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
*
37452208 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGTGG
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
* ** ** * * * * * * *
37452258 TGCAGCGGAATGGATTGAAGCTACGATGGCGAATCTCACTTCCCCGACAG
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
* * * * *
37452308 TGCAATTTAAAAGATTGAAGCCACAACGGTGAATTTTACTCCCCCGGCGG
1 TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
* * *
37452358 TGCAGC-AAAACAGATTGAAGCTACAAC
1 TGCAACTTAAA-AGATTGAAGCCACAAC
37452385 AATTGAAGAT
Statistics
Matches: 560, Mismatches: 196, Indels: 42
0.70 0.25 0.05
Matches are distributed among these distances:
49 24 0.04
50 517 0.92
51 19 0.03
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (50 bp):
TGCAACTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCAGGCGG
Found at i:37453907 original size:3 final size:3
Alignment explanation
Indices: 37453901--37453933 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
37453891 ATAATAATAA
*
37453901 TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37453934 AATTGCCCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:37453976 original size:18 final size:16
Alignment explanation
Indices: 37453942--37453985 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
37453932 ATAATTGCCC
*
37453942 TTATATATACGTTTTT
1 TTATATATACATTTTT
37453958 TTATATATACATATATTT
1 TTATATATACAT-T-TTT
*
37453976 TTTTATATAC
1 TTATATATAC
37453986 TTACACACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 11 0.46
17 1 0.04
18 12 0.50
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (16 bp):
TTATATATACATTTTT
Found at i:37454017 original size:24 final size:22
Alignment explanation
Indices: 37453959--37454017 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 22
37453949 TACGTTTTTT
* *
37453959 TATATATACATATATTTTTTTA
1 TATATATACACATATTTTTTAA
*
37453981 TATACTTACACACATACTTTTTGTAA
1 TATA--TATACACATA-TTTTT-TAA
37454007 TATATATACAC
1 TATATATACAC
37454018 TTACATATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
22 4 0.14
24 14 0.48
25 5 0.17
26 6 0.21
ACGTcount: A:0.37, C:0.14, G:0.02, T:0.47
Consensus pattern (22 bp):
TATATATACACATATTTTTTAA
Found at i:37454126 original size:39 final size:39
Alignment explanation
Indices: 37454064--37454138 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 39
37454054 TATATGTGTT
* * *
37454064 CTTTATATTTTATGATTCATACATATATCTATATATATA
1 CTTTATATTTTATGATACATACATACATATATATATATA
* **
37454103 CTTTTTATTTTATGATAGTTACATACATATATATAT
1 CTTTATATTTTATGATACATACATACATATATATAT
37454139 GTATATGCTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 30 1.00
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (39 bp):
CTTTATATTTTATGATACATACATACATATATATATATA
Found at i:37454676 original size:112 final size:110
Alignment explanation
Indices: 37454473--37454895 Score: 545
Period size: 110 Copynumber: 3.8 Consensus size: 110
37454463 TATTTCCAAT
*
37454473 TAAGGCAATGCTTTGCGTTTGAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTT
1 TAAGGCAATGTTTTGCGTTTG-GAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTT
*
37454538 TCTCGTTCAACCAAATGGCTAAATATCCTTTTAAATTTTTTTTTAAAA
65 TCTCGTTCAACCAAATGACTAAATATCCTTTTAAA--TTTTTTTAAAA
* * *
37454586 TAAGACAATGTTTTGCGTTTGGAAATTCGAGAAAATATGCCCTAAGGTGCTGGGTGTTGATTTTT
1 TAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTT
*
37454651 CTCGTTCAACCAAATGACTTAATATCCTTTTAAAATTTTTTT--AA
66 CTCGTTCAACCAAATGACTAAATATCCTTTT-AAATTTTTTTAAAA
*
37454695 TAAGGCGATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTT
1 TAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTT
* *** *
37454760 TCTCATTCAACCAAAT-AGCTAAATATCCTTTTAAAAAATTTCAAAA
65 TCTCGTTCAACCAAATGA-CTAAATATCCTTTTAAATTTTTTTAAAA
* * * * * * *
37454806 TAAGGCAATGTTTCGCGTTTAGAAATTTGAG-GAACGTACCCTAAGGTGCTGGGTTTCGA--TTT
1 TAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTT
* *
37454868 CTCGTTTAACCAAAT-AGCCAAATATCCT
66 CTCGTTCAACCAAATGA-CTAAATATCCT
37454896 CTCGAAATTC
Statistics
Matches: 278, Mismatches: 27, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
107 28 0.10
109 51 0.18
110 79 0.28
111 27 0.10
112 71 0.26
113 22 0.08
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (110 bp):
TAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTT
CTCGTTCAACCAAATGACTAAATATCCTTTTAAATTTTTTTAAAA
Found at i:37461803 original size:11 final size:11
Alignment explanation
Indices: 37461784--37461829 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
37461774 TCTGTTGCAG
*
37461784 TTTTGCTATTA
1 TTTTACTATTA
37461795 TTTTACTATTA
1 TTTTACTATTA
* *
37461806 TATTGCTATTA
1 TTTTACTATTA
*
37461817 TTTTATTATTA
1 TTTTACTATTA
37461828 TT
1 TT
37461830 ATTTGGATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.65
Consensus pattern (11 bp):
TTTTACTATTA
Found at i:37461811 original size:22 final size:22
Alignment explanation
Indices: 37461786--37461828 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
37461776 TGTTGCAGTT
37461786 TTGCTATTATTTTACTATTATA
1 TTGCTATTATTTTACTATTATA
*
37461808 TTGCTATTATTTTATTATTAT
1 TTGCTATTATTTTACTATTAT
37461829 TATTTGGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.07, G:0.05, T:0.63
Consensus pattern (22 bp):
TTGCTATTATTTTACTATTATA
Found at i:37462710 original size:9 final size:9
Alignment explanation
Indices: 37462696--37462723 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
37462686 TTTTGTTACA
37462696 ACAATTAAT
1 ACAATTAAT
37462705 ACAATTAAT
1 ACAATTAAT
37462714 ACAATTAAT
1 ACAATTAAT
37462723 A
1 A
37462724 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:37462745 original size:68 final size:66
Alignment explanation
Indices: 37462666--37462807 Score: 248
Period size: 68 Copynumber: 2.1 Consensus size: 66
37462656 TTAAGTTTGT
*
37462666 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
37462731 AAA
64 AAA
37462734 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
*
37462799 T
66 A
37462800 TTTACTAA
1 TTTACTAA
37462808 CAATTAATTT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
66 27 0.38
67 1 0.01
68 44 0.61
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATTAATAATTTGATAA
A
Found at i:37462817 original size:16 final size:16
Alignment explanation
Indices: 37462796--37462837 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
37462786 AATAATTTGA
*
37462796 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
*
37462812 TAATTTAAATAACAAT
1 TAATTTTAATAACAAT
*
37462828 TAGTTTTAAT
1 TAATTTTAAT
37462838 TTTATTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.45
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:37472784 original size:73 final size:72
Alignment explanation
Indices: 37472651--37472798 Score: 181
Period size: 73 Copynumber: 2.0 Consensus size: 72
37472641 TAACGTTGGG
* ** * *
37472651 ATTAATTCATTTGTTGCCTACTTTTTGCGGTTTGAAAAACAAGAACTTCCACACTCATCTGAAAG
1 ATTAATTCATTTATTGCCTACTTTCCGCGATTTGAAAAACAAGAACTT-CACACTCATCTGAAAA
37472716 AGTTCCAC
65 AGTTCCAC
* * * *
37472724 ATTAATTCATTTATTGCCTACTTTCCGTGATTTGAAAAACGAGAACCCTT-ACATTTATCTGAAA
1 ATTAATTCATTTATTGCCTACTTTCCGCGATTTGAAAAACAAGAA--CTTCACACTCATCTGAAA
37472788 AAGTTCCAC
64 AAGTTCCAC
37472797 AT
1 AT
37472799 GGTTTGTTTA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
73 61 0.95
75 3 0.05
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (72 bp):
ATTAATTCATTTATTGCCTACTTTCCGCGATTTGAAAAACAAGAACTTCACACTCATCTGAAAAA
GTTCCAC
Found at i:37473830 original size:21 final size:22
Alignment explanation
Indices: 37473789--37473831 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
37473779 TAAATAAATG
37473789 TGTAATAAATATATGTATACATT
1 TGTAATAAATATATG-ATACATT
*
37473812 TGTAATTAATATATG-TACAT
1 TGTAATAAATATATGATACAT
37473832 ACTTATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
23 14 0.74
ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44
Consensus pattern (22 bp):
TGTAATAAATATATGATACATT
Found at i:37473979 original size:26 final size:27
Alignment explanation
Indices: 37473927--37473984 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
37473917 AACAGAATAG
*
37473927 GAAAACGAAAACAGGGGAGAAAGGAAA
1 GAAAACGAAAACAGGGAAGAAAGGAAA
*
37473954 GAAAACTAAAA-AGGGAAGGAAA-GAAA
1 GAAAACGAAAACAGGGAA-GAAAGGAAA
37473980 GAAAA
1 GAAAA
37473985 TTTGGGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 14 0.50
27 14 0.50
ACGTcount: A:0.64, C:0.05, G:0.29, T:0.02
Consensus pattern (27 bp):
GAAAACGAAAACAGGGAAGAAAGGAAA
Found at i:37475144 original size:37 final size:38
Alignment explanation
Indices: 37475044--37475144 Score: 87
Period size: 37 Copynumber: 2.6 Consensus size: 38
37475034 GACCTTGAGT
* **
37475044 CGATGAGACACTAGGTGTCATACTGTTACTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AC--TTACTTCGGATAGAGC
** ** * *
37475085 CGATGAGGTACTGGGTACCAACTTACTTCGGCTTG-GC
1 CGATGAGACACTGGGTGTCAACTTACTTCGGATAGAGC
37475122 CGATGAGACACTGGGTGTCAACT
1 CGATGAGACACTGGGTGTCAACT
37475145 ATTGCTTCGA
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
37 19 0.40
38 11 0.23
40 2 0.04
41 15 0.32
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAACTTACTTCGGATAGAGC
Found at i:37483515 original size:21 final size:21
Alignment explanation
Indices: 37483488--37483543 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
37483478 AGCTCTCACG
37483488 AGCTTCTGTTTAACTC-ATATA
1 AGCTTCTGTTTAACTCTAT-TA
* * *
37483509 AGTTTCTGTTGAACTCTATTG
1 AGCTTCTGTTTAACTCTATTA
37483530 AGCTTCTGTTTAAC
1 AGCTTCTGTTTAAC
37483544 CCTTATGGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 27 0.93
22 2 0.07
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (21 bp):
AGCTTCTGTTTAACTCTATTA
Found at i:37483557 original size:21 final size:21
Alignment explanation
Indices: 37483533--37483602 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
37483523 TCTATTGAGC
*
37483533 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTCAACCCTTATGGGT
* * * * *
37483554 TTCTGTTCAGCTCTTACGAGC
1 TTCTGTTCAACCCTTATGGGT
*
37483575 TTCCGTTCAACCCTTATGGGT
1 TTCTGTTCAACCCTTATGGGT
*
37483596 TTTTGTT
1 TTCTGTT
37483603 TAGCTTTCAT
Statistics
Matches: 35, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAACCCTTATGGGT
Found at i:37483617 original size:42 final size:42
Alignment explanation
Indices: 37483469--37483625 Score: 138
Period size: 42 Copynumber: 3.7 Consensus size: 42
37483459 TCATGTTTTC
* * * * * * * **
37483469 TTTCCGTTTAGCTCTCACGAGCTTCTGTTTAACTCATATAAG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGG
* * *
37483511 TTTCTGTTGAACTC-TATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCTGTTCAGCTCTTA-TGAGCTTCTGTTCAACCCTTATGGG
* *
37483553 TTTCTGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTATGGG
1 TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGG
* *
37483595 TTTTTGTTTAGCT-TTCATGAGCTTCTGTTCA
1 TTTCTGTTCAGCTCTT-ATGAGCTTCTGTTCA
37483626 GCTTTCGAGC
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 3 0.03
42 89 0.95
43 2 0.02
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (42 bp):
TTTCTGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGG
Found at i:37483637 original size:19 final size:20
Alignment explanation
Indices: 37483599--37483639 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
37483589 TATGGGTTTT
*
37483599 TGTTTAGCTTTCATGAGCTTC
1 TGTTCAGCTTTCA-GAGCTTC
37483620 TGTTCAGCTTTC-GAGCTTC
1 TGTTCAGCTTTCAGAGCTTC
37483639 T
1 T
37483640 AAAAAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
21 11 0.58
ACGTcount: A:0.12, C:0.22, G:0.20, T:0.46
Consensus pattern (20 bp):
TGTTCAGCTTTCAGAGCTTC
Found at i:37485876 original size:18 final size:17
Alignment explanation
Indices: 37485842--37485892 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 17
37485832 AACCCTAGAG
37485842 TAAATAAAATAGAATAAAA
1 TAAAT-AAATAGAAT-AAA
37485861 TAAATAAATA-ATATAAA
1 TAAATAAATAGA-ATAAA
*
37485878 TAATATAAATTGAAT
1 TAA-ATAAATAGAAT
37485893 TGAATTGTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 7 0.25
18 15 0.54
19 6 0.21
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (17 bp):
TAAATAAATAGAATAAA
Found at i:37485887 original size:9 final size:9
Alignment explanation
Indices: 37485854--37485887 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
37485844 AATAAAATAG
37485854 AATA-AAAT
1 AATATAAAT
37485862 AA-ATAAAT
1 AATATAAAT
37485870 AATATAAAT
1 AATATAAAT
37485879 AATATAAAT
1 AATATAAAT
37485888 TGAATTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 1 0.04
8 8 0.33
9 15 0.62
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (9 bp):
AATATAAAT
Found at i:37493834 original size:13 final size:14
Alignment explanation
Indices: 37493799--37493840 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 14
37493789 ATCATATATT
37493799 TTATGTTTAAATAA
1 TTATGTTTAAATAA
*
37493813 TT-T-TTTAAA-AG
1 TTATGTTTAAATAA
37493824 TTATGTTTAAATAA
1 TTATGTTTAAATAA
37493838 TTA
1 TTA
37493841 CTTCACTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
11 3 0.13
12 7 0.30
13 7 0.30
14 6 0.26
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTATGTTTAAATAA
Found at i:37497441 original size:31 final size:32
Alignment explanation
Indices: 37497375--37497441 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
37497365 AAATTTTTTT
* *
37497375 TTTTTGAAAATTTTAATTAAGCTCTCTTAAAA
1 TTTTTGAAAATTTTAATTAAGCTCACTAAAAA
* * *
37497407 TTTTTGAAAATTTTTATTTATCTCAC-AAAAA
1 TTTTTGAAAATTTTAATTAAGCTCACTAAAAA
37497438 TTTT
1 TTTT
37497442 AATATTTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 8 0.27
32 22 0.73
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (32 bp):
TTTTTGAAAATTTTAATTAAGCTCACTAAAAA
Found at i:37497859 original size:27 final size:27
Alignment explanation
Indices: 37497821--37497875 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
37497811 GTTTCAATAC
37497821 TTTCCCTACAACATCAAATATCTGTTG
1 TTTCCCTACAACATCAAATATCTGTTG
37497848 TTTCCCTACAACATCAAATATCTGTTG
1 TTTCCCTACAACATCAAATATCTGTTG
37497875 T
1 T
37497876 GCAACATCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.38
Consensus pattern (27 bp):
TTTCCCTACAACATCAAATATCTGTTG
Found at i:37502972 original size:13 final size:13
Alignment explanation
Indices: 37502956--37502989 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
37502946 TCTTTAGCCA
37502956 TTAACT-TTAACAG
1 TTAACTGTTAA-AG
37502969 TTAACTGTTAAAG
1 TTAACTGTTAAAG
37502982 TTAACTGT
1 TTAACTGT
37502990 CCCTAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (13 bp):
TTAACTGTTAAAG
Found at i:37503336 original size:20 final size:20
Alignment explanation
Indices: 37503284--37503337 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
37503274 TTTAGTACGA
37503284 TATTTTTATAATTTTTTAAC
1 TATTTTTATAATTTTTTAAC
*
37503304 TAATTTTAT-ATTTCTTT-AC
1 TATTTTTATAATTT-TTTAAC
37503323 -ATTTTTTATAATTTT
1 TA-TTTTTATAATTTT
37503338 CTTACGACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
18 1 0.03
19 13 0.45
20 15 0.52
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTTTTATAATTTTTTAAC
Found at i:37503407 original size:10 final size:10
Alignment explanation
Indices: 37503392--37503450 Score: 50
Period size: 9 Copynumber: 5.9 Consensus size: 10
37503382 AAAAAAATTC
37503392 TAATTTTTAA
1 TAATTTTTAA
37503402 TAATTTTTTAA
1 TAA-TTTTTAA
37503413 T-ATTTTTAA
1 TAATTTTTAA
**
37503422 TTAAAATTTAA
1 -TAATTTTTAA
*
37503433 TCATTTTT-A
1 TAATTTTTAA
*
37503442 TAACTTTTA
1 TAATTTTTA
37503451 TTTTTTATCA
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
9 14 0.37
10 10 0.26
11 14 0.37
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.59
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:37504871 original size:43 final size:42
Alignment explanation
Indices: 37504805--37504933 Score: 156
Period size: 43 Copynumber: 3.0 Consensus size: 42
37504795 ATAGGATTTC
*
37504805 CGATATGTGTTATCGTGTAAGACCACGTCTAGGACGTTGGCAT
1 CGATATGTGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCAT
37504848 CGACT-TGTGTTTACGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGA-TATGTG-TTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* *
37504891 CGATATGTGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 CGATATGTG-TTACGTGTAAGACCACGTCTGGGACGTTGGCAT
37504934 TGTACGAGTT
Statistics
Matches: 75, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
42 3 0.04
43 66 0.88
44 6 0.08
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (42 bp):
CGATATGTGTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:37505824 original size:47 final size:47
Alignment explanation
Indices: 37505770--37505889 Score: 152
Period size: 47 Copynumber: 2.6 Consensus size: 47
37505760 TGAGTTGAAC
** *
37505770 CAATTTGTTACATATATGCTGTCCAATTTTGATGCT-TAAATGCTGCT
1 CAATTTGTTGTATATATGCTGTCCAATTTTGATG-TAAAAATGCTGCT
* *
37505817 CAATTTGTTGTATATATGCTGTCCAGTTTTGGTGTAAAAATGCTGCT
1 CAATTTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGCTGCT
** *
37505864 CAAACTGTTGTATATATGCTGCCCAA
1 CAATTTGTTGTATATATGCTGTCCAA
37505890 ATTGTTGTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 1 0.02
47 62 0.98
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (47 bp):
CAATTTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGCTGCT
Found at i:37505936 original size:23 final size:23
Alignment explanation
Indices: 37505781--37505937 Score: 104
Period size: 23 Copynumber: 6.7 Consensus size: 23
37505771 AATTTGTTAC
*
37505781 ATATATGCTGTCCAATTTTGATGCT
1 ATATATGCTGTCCAA-ATTGATG-T
* * *
37505806 -TAAATGCTG-CTCAATTTGTTGT
1 ATATATGCTGTC-CAAATTGATGT
** *
37505828 ATATATGCTGTCCAGTTTTGGTGT
1 ATATATGCTGTCCA-AATTGATGT
* * * *
37505852 AAAAATGCTG-CTCAAACTGTTGT
1 ATATATGCTGTC-CAAATTGATGT
* *
37505875 ATATATGCTGCCCAAATTGTTGT
1 ATATATGCTGTCCAAATTGATGT
*
37505898 ATTTATGCTGTCCAAATTGATGT
1 ATATATGCTGTCCAAATTGATGT
* *
37505921 ATAAAAGCTGTCCAAAT
1 ATATATGCTGTCCAAAT
37505938 AGGGTAGATT
Statistics
Matches: 106, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
22 1 0.01
23 75 0.71
24 30 0.28
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.39
Consensus pattern (23 bp):
ATATATGCTGTCCAAATTGATGT
Found at i:37523750 original size:2 final size:2
Alignment explanation
Indices: 37523743--37523775 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
37523733 TTTTGTGCTT
37523743 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
37523776 TATAGGGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:37530948 original size:16 final size:16
Alignment explanation
Indices: 37530927--37530965 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
37530917 ATTTTGTTAC
*
37530927 AACAATTAATATAATT
1 AACAATTAATACAATT
37530943 AACAATTAATACAATT
1 AACAATTAATACAATT
*
37530959 AATAATT
1 AACAATT
37530966 TGATAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (16 bp):
AACAATTAATACAATT
Found at i:37530990 original size:16 final size:16
Alignment explanation
Indices: 37530969--37531010 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
37530959 AATAATTTGA
*
37530969 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
37530985 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
37531001 TAGTTTTAAT
1 TAATTTTAAT
37531011 TTTATCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:37543390 original size:18 final size:18
Alignment explanation
Indices: 37543367--37543401 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37543357 AAAGCTTACA
37543367 CATTGCAATTGGTCATAC
1 CATTGCAATTGGTCATAC
* *
37543385 CATTGCATTTGTTCATA
1 CATTGCAATTGGTCATA
37543402 TGGCCAACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (18 bp):
CATTGCAATTGGTCATAC
Found at i:37547419 original size:249 final size:250
Alignment explanation
Indices: 37546981--37547543 Score: 867
Period size: 249 Copynumber: 2.3 Consensus size: 250
37546971 CCCAAACATG
** * *
37546981 CTACTGTAGCAAAAGTGCGTCCACGTGGGTGCGATTTCACAAATTCTTCTCATAAAGCATCTTGG
1 CTACTGTAGCAAAAGCACGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGG
* * *
37547046 TAGAAGCGATTTTATACTATTTGTTCAGAAACGTCAACTCGAAATTATTTCTTCTAGGACCAACT
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAAGACCAACT
* * * * *
37547111 GTAGCAAAAGCGCGTCTACGAGGACGCGATTTCAGAAATTCTTCTCAAATAGCATCCTGCTTGAA
131 GTAGCAAAAGCGCATCCACGAGGACGCGATTTCACAAATTATTCACAAATAGCATCCTGCTTGAA
**
37547176 GCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAAT-AATTTTTTAGGAC
196 GCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAAATTTTCCAGGAC
*
37547230 CTACTGTAGTAAAAGCACGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGG
1 CTACTGTAGCAAAAGCACGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGG
*
37547295 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAAGACCGACT
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAAGACCAACT
* * *
37547360 GTAGCAAAAGCGCATCCAGGAGGGCGCGATTTCACAAATTATTCACATATAGCATCCTGCTTGAA
131 GTAGCAAAAGCGCATCCACGAGGACGCGATTTCACAAATTATTCACAAATAGCATCCTGCTTGAA
*
37547425 GCGTTTTTTATACTATTTGCTCAGAAATGTCAACTCGAAATAAATTTTCCAGGAC
196 GCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAAATTTTCCAGGAC
* * * * * * * *
37547480 CTACTGTAGCAAAAGCACGTACACGTGGGCACGACTGCAAAAATCCTTCTGATAAATCATCCTG
1 CTACTGTAGCAAAAGCACGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
37547544 CTTTGATTTT
Statistics
Matches: 284, Mismatches: 29, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
249 218 0.77
250 66 0.23
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (250 bp):
CTACTGTAGCAAAAGCACGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAAGACCAACT
GTAGCAAAAGCGCATCCACGAGGACGCGATTTCACAAATTATTCACAAATAGCATCCTGCTTGAA
GCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATAAATTTTCCAGGAC
Found at i:37547546 original size:125 final size:125
Alignment explanation
Indices: 37546981--37547546 Score: 708
Period size: 125 Copynumber: 4.5 Consensus size: 125
37546971 CCCAAACATG
* * * *
37546981 CTACTGTAGCAAAAGTGCGTCCACGTGGGTGCGATTTCACAAATTCTTCTCATAAAGCATCTTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * * *
37547046 TAGAAGCGATTTTATACTATTTGTTCAGAAACGTCAACTCGAAATTATTTCTTCTAGGAC
66 TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTAATTCTTCCAGGAC
* * * * *
37547106 CAACTGTAGCAAAAGCGCGTCTACGAGGACGCGATTTCAGAAATTCTTCTCA-AATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* **
37547170 CTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAA-TAATT-TTTTAGGAC
65 CTTGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTAATTCTTCCAGGAC
* * *
37547230 CTACTGTAGTAAAAGCACGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * *
37547295 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAAGAC
66 TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTAATTCTTCCAGGAC
* * * * * * *
37547355 CGACTGTAGCAAAAGCGCATCCAGGAGGGCGCGATTTCACAAATTATTCACATATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * *
37547420 TTGAAGCGTTTTTTATACTATTTGCTCAGAAATGTCAACTCGAAATAAATT-TTCCAGGAC
66 TTGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTAATTCTTCCAGGAC
* * * * * * * * *
37547480 CTACTGTAGCAAAAGCACGTACACGTGGGCACGACTGCAAAAATCCTTCTGATAAATCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
37547545 TT
66 TT
37547547 TGATTTTATC
Statistics
Matches: 375, Mismatches: 60, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
123 35 0.09
124 75 0.20
125 193 0.51
126 72 0.19
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTAATTCTTCCAGGAC
Found at i:37548093 original size:16 final size:17
Alignment explanation
Indices: 37548058--37548098 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
37548048 TTGTTTTTTT
37548058 TTTTAAATTATTAAATA
1 TTTTAAATTATTAAATA
37548075 TTTT-AATTAATTAAA-A
1 TTTTAAATT-ATTAAATA
37548091 TTTGTAAA
1 TTT-TAAA
37548099 ATATGTCAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.38
17 11 0.52
18 2 0.10
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTTAAATTATTAAATA
Found at i:37549392 original size:43 final size:43
Alignment explanation
Indices: 37549331--37549416 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
37549321 GCTAAAATTT
37549331 CTTGTATGTCAATGGACTTTTCATCAGTTCAATATGAAATCTA
1 CTTGTATGTCAATGGACTTTTCATCAGTTCAATATGAAATCTA
*
37549374 CTTGTATGTCAGTGGACTTTTCATCAGTTCAATATGAAATCTA
1 CTTGTATGTCAATGGACTTTTCATCAGTTCAATATGAAATCTA
37549417 TCCAATTCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (43 bp):
CTTGTATGTCAATGGACTTTTCATCAGTTCAATATGAAATCTA
Found at i:37549641 original size:32 final size:32
Alignment explanation
Indices: 37549595--37549659 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
37549585 TGGTTATTGG
* *
37549595 TGGTTCAGCTAGAAGGGGAGAAGCAGAGCGGA
1 TGGTTCAGCCAGAAGAGGAGAAGCAGAGCGGA
37549627 TGGTTCAGCCAGAAGAGGAGAAGCAGAGCGGA
1 TGGTTCAGCCAGAAGAGGAGAAGCAGAGCGGA
37549659 T
1 T
37549660 TGTGAAGGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.14, G:0.42, T:0.12
Consensus pattern (32 bp):
TGGTTCAGCCAGAAGAGGAGAAGCAGAGCGGA
Found at i:37553859 original size:11 final size:11
Alignment explanation
Indices: 37553843--37553869 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
37553833 ATTCTTCATG
37553843 TAAAAGTACCA
1 TAAAAGTACCA
37553854 TAAAAGTACCA
1 TAAAAGTACCA
37553865 TAAAA
1 TAAAA
37553870 TCCCTTGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.15, G:0.07, T:0.19
Consensus pattern (11 bp):
TAAAAGTACCA
Found at i:37563592 original size:31 final size:28
Alignment explanation
Indices: 37563557--37563654 Score: 81
Period size: 31 Copynumber: 3.2 Consensus size: 28
37563547 GTTTGGGTCA
37563557 GGACTGAAATTGACCAATTTGAAAAGTATAG
1 GGACT-AAATTGA-CAATTT-AAAAGTATAG
*
37563588 GGACTAAAGTTGATCAAATT-AAAGTATAG
1 GGACTAAA-TTGA-CAATTTAAAAGTATAG
* * *
37563617 AGACTAAATTTACAATTTTTATAAAGTAGAG
1 GGACTAAATTGACAA--TTTA-AAAGTATAG
37563648 GGACTAA
1 GGACTAA
37563655 TAGTAAAATT
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
27 3 0.05
28 3 0.05
29 18 0.33
30 3 0.05
31 28 0.51
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (28 bp):
GGACTAAATTGACAATTTAAAAGTATAG
Found at i:37568779 original size:16 final size:17
Alignment explanation
Indices: 37568745--37568789 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
37568735 CATATATATG
*
37568745 AAAAAACAAAACAAAAA
1 AAAAAAGAAAACAAAAA
*
37568762 AAAAAAGAAAA-AAGAA
1 AAAAAAGAAAACAAAAA
*
37568778 AAGAAAGAAAAC
1 AAAAAAGAAAAC
37568790 CATATTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.58
17 10 0.42
ACGTcount: A:0.84, C:0.07, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAAAAGAAAACAAAAA
Found at i:37568780 original size:12 final size:12
Alignment explanation
Indices: 37568744--37568788 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
37568734 TCATATATAT
*
37568744 GAAAAAACAAAA
1 GAAAAAAAAAAA
*
37568756 CAAAAAAAAAAA
1 GAAAAAAAAAAA
*
37568768 GAAAAAAGAAAA
1 GAAAAAAAAAAA
37568780 GAAAGAAAA
1 GAAA-AAAA
37568789 CCATATTCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 24 0.89
13 3 0.11
ACGTcount: A:0.84, C:0.04, G:0.11, T:0.00
Consensus pattern (12 bp):
GAAAAAAAAAAA
Found at i:37571690 original size:49 final size:49
Alignment explanation
Indices: 37571613--37571711 Score: 164
Period size: 49 Copynumber: 2.0 Consensus size: 49
37571603 TTGTAACAAC
* *
37571613 ATAGTACATCGTTGCCAGTTGTGGTAGGCTTTGGTACCAAATTGTTATG
1 ATAGTACATCATTGCCAGTTGTGATAGGCTTTGGTACCAAATTGTTATG
37571662 ATAGTACATCATTGCCTA-TTGTGATAGGCTTTGGTACCAAATTGTTATG
1 ATAGTACATCATTGCC-AGTTGTGATAGGCTTTGGTACCAAATTGTTATG
37571711 A
1 A
37571712 ATACACAAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 46 0.98
50 1 0.02
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.37
Consensus pattern (49 bp):
ATAGTACATCATTGCCAGTTGTGATAGGCTTTGGTACCAAATTGTTATG
Found at i:37575598 original size:43 final size:43
Alignment explanation
Indices: 37575548--37575860 Score: 373
Period size: 43 Copynumber: 7.3 Consensus size: 43
37575538 ACTTTAGAAA
*
37575548 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
* * * *
37575591 AAACGCCGCTAAAGACCACGACCTTTAACGGCGGTTCTTCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
* * * *
37575634 AAACACCGCTAAAGACAAAGACCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
* * *
37575677 AAACGCCGTTAAAGACCAAGACCTTTAACGGCGCTATTTCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
* * * *
37575720 AAACGTCGCTATAGACCATGACCTTTCGCGGCGCTTTTAT-CAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTT-TCCAC
* *
37575763 AAACGCCGCTATAA-ACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTA-AAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
* ** *
37575806 AAACGCCGCTAAAGAACAA-ACCTTTAGCGGCG-TTTCTAGCAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTT-TTCCAC
37575848 AAACGCCGCTAAA
1 AAACGCCGCTAAA
37575861 AACATAATCT
Statistics
Matches: 231, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
41 3 0.01
42 31 0.13
43 195 0.84
44 2 0.01
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.20
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTTCCAC
Found at i:37578860 original size:14 final size:14
Alignment explanation
Indices: 37578841--37578878 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
37578831 CCTAAATCAC
37578841 TAACTCTTAACCCA
1 TAACTCTTAACCCA
*
37578855 TAACTCTTAACCCT
1 TAACTCTTAACCCA
*
37578869 TAAATCTTAA
1 TAACTCTTAA
37578879 ATCTCAACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.34
Consensus pattern (14 bp):
TAACTCTTAACCCA
Found at i:37579289 original size:22 final size:21
Alignment explanation
Indices: 37579211--37579289 Score: 52
Period size: 22 Copynumber: 3.6 Consensus size: 21
37579201 AAACCCTTAA
*
37579211 CACATAACCTCTAAACCTTAAAC
1 CACA-AACCT-TAAACCATAAAC
* *
37579234 C-CCAGCCTTTAAACCATAAAC
1 CACAAACC-TTAAACCATAAAC
* * * *
37579255 CATAACCCCTAAACTCATAATC
1 CACAAACCTTAAAC-CATAAAC
37579277 CACAAACCTTAAA
1 CACAAACCTTAAA
37579290 ATGGTATCAC
Statistics
Matches: 42, Mismatches: 11, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
21 20 0.48
22 21 0.50
23 1 0.02
ACGTcount: A:0.43, C:0.35, G:0.01, T:0.20
Consensus pattern (21 bp):
CACAAACCTTAAACCATAAAC
Found at i:37579558 original size:40 final size:40
Alignment explanation
Indices: 37579503--37579578 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
37579493 TAAATCCCTG
* *
37579503 AGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAAATAA
1 AGCATTAGCGACGCTTTATAAAAAACGCCGCTAAAAATAA
* *
37579543 AGCATTCGCGACGCTTTATCAAAAACGCCGCTAAAA
1 AGCATTAGCGACGCTTTATAAAAAACGCCGCTAAAA
37579579 GCCCTGAGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (40 bp):
AGCATTAGCGACGCTTTATAAAAAACGCCGCTAAAAATAA
Found at i:37579632 original size:41 final size:40
Alignment explanation
Indices: 37579562--37579785 Score: 340
Period size: 41 Copynumber: 5.5 Consensus size: 40
37579552 GACGCTTTAT
37579562 CAAAAACGCCGCTAAAAGCCCTGAGCATTAGCGGCGCTATCC
1 CAAAAACGCCGCT-AAAGCCCTGAGCATTAGCGGCGCT-TCC
37579604 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCC
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTT-CC
* * *
37579645 CAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCACTTTCT
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTCC
* *
37579686 CAAAAACGCCGCTAAAGCCCTGACCATTAGCGGCGCTTTTC
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGC-TTCC
**
37579727 CAAAAATACCGCTAAAGCCCTGAGCATTAGCGGCGCTTCC
1 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCC
37579767 CAAAAACGCCGCTAAAGCC
1 CAAAAACGCCGCTAAAGCC
37579786 TAGAAAGCTC
Statistics
Matches: 166, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
40 21 0.13
41 130 0.78
42 15 0.09
ACGTcount: A:0.30, C:0.34, G:0.20, T:0.16
Consensus pattern (40 bp):
CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCC
Found at i:37579640 original size:123 final size:122
Alignment explanation
Indices: 37579493--37579782 Score: 395
Period size: 123 Copynumber: 2.4 Consensus size: 122
37579483 TAAATTATTT
* *** * *
37579493 TAAATCCCTGAGCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAA-AATAAAGCATTCGCGACGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAACAAT-AAGCATTAGCGACAC
* *
37579557 TTTATCAAAAACGCCGCTAAAAGCCCTGAGCATTAGCGGCGCTATCCCAAAAACGCCGC
65 TTTATCAAAAACGCCGCT-AAAGCCCTGACCATTAGCGGCGCTATCCCAAAAACACCGC
* ** *
37579616 TAAAGCCCTGAGCATTAGCGGCGCTTCCCCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAA-CAATAAGCATTAGCGACAC
* * * *
37579681 TTTCTCAAAAACGCCGCTAAAGCCCTGACCATTAGCGGCGCTTTTCCAAAAATACCGC
65 TTTATCAAAAACGCCGCTAAAGCCCTGACCATTAGCGGCGCTATCCCAAAAACACCGC
37579739 TAAAGCCCTGAGCATTAGCGGCGC-TTCCCAAAAACGCCGCTAAA
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAA
37579783 GCCTAGAAAG
Statistics
Matches: 148, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
122 19 0.13
123 99 0.67
124 29 0.20
125 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (122 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCTAAACAATAAGCATTAGCGACACT
TTATCAAAAACGCCGCTAAAGCCCTGACCATTAGCGGCGCTATCCCAAAAACACCGC
Found at i:37579888 original size:39 final size:40
Alignment explanation
Indices: 37579845--37579953 Score: 157
Period size: 40 Copynumber: 2.8 Consensus size: 40
37579835 TTCTGGGAAA
* *
37579845 CGCCACTAATGCTTG-TTTTTAGCGGCGTTTTTCATAAAG
1 CGCCACTAATGCTTGATCTTTAGCGGCGTTTTTCAAAAAG
* * *
37579884 CGCCATTAATACTCGATCTTTAGCGGCGTTTTTCAAAAAG
1 CGCCACTAATGCTTGATCTTTAGCGGCGTTTTTCAAAAAG
*
37579924 CGCCGCTAATGCTTGATCTTTAGCGGCGTT
1 CGCCACTAATGCTTGATCTTTAGCGGCGTT
37579954 ATTTATCTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 12 0.20
40 48 0.80
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (40 bp):
CGCCACTAATGCTTGATCTTTAGCGGCGTTTTTCAAAAAG
Found at i:37598983 original size:156 final size:156
Alignment explanation
Indices: 37598791--37599102 Score: 624
Period size: 156 Copynumber: 2.0 Consensus size: 156
37598781 AACTTTATAC
37598791 ATCTATGTTATTTAAAGATATAGTTTATAAATTATTGAGCTGAATTTTATGTGGATTCTATATAC
1 ATCTATGTTATTTAAAGATATAGTTTATAAATTATTGAGCTGAATTTTATGTGGATTCTATATAC
37598856 AATTATGAGATACAACTTCTGTGAATTGAGATTTTTTTAAAGCTTAGTACCAATCAGATTAATTG
66 AATTATGAGATACAACTTCTGTGAATTGAGATTTTTTTAAAGCTTAGTACCAATCAGATTAATTG
37598921 CCGGTGAAATGTTTCGGACTTTACGT
131 CCGGTGAAATGTTTCGGACTTTACGT
37598947 ATCTATGTTATTTAAAGATATAGTTTATAAATTATTGAGCTGAATTTTATGTGGATTCTATATAC
1 ATCTATGTTATTTAAAGATATAGTTTATAAATTATTGAGCTGAATTTTATGTGGATTCTATATAC
37599012 AATTATGAGATACAACTTCTGTGAATTGAGATTTTTTTAAAGCTTAGTACCAATCAGATTAATTG
66 AATTATGAGATACAACTTCTGTGAATTGAGATTTTTTTAAAGCTTAGTACCAATCAGATTAATTG
37599077 CCGGTGAAATGTTTCGGACTTTACGT
131 CCGGTGAAATGTTTCGGACTTTACGT
37599103 CTAGCAGGCT
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 156 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (156 bp):
ATCTATGTTATTTAAAGATATAGTTTATAAATTATTGAGCTGAATTTTATGTGGATTCTATATAC
AATTATGAGATACAACTTCTGTGAATTGAGATTTTTTTAAAGCTTAGTACCAATCAGATTAATTG
CCGGTGAAATGTTTCGGACTTTACGT
Found at i:37601637 original size:16 final size:17
Alignment explanation
Indices: 37601611--37601645 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
37601601 TAGAATTGTG
*
37601611 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
37601628 TTGA-AAAATTAATTAA
1 TTGAGAAAATTAATTAA
37601644 TT
1 TT
37601646 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:37612131 original size:22 final size:23
Alignment explanation
Indices: 37612088--37612131 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
37612078 TTATCATTGT
* **
37612088 TATAAAAAATATTTAATTATAAC
1 TATAAAAAATAATTAAAAATAAC
37612111 TATAAAAAA-AATTAAAAATAA
1 TATAAAAAATAATTAAAAATAA
37612132 TTATCATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
TATAAAAAATAATTAAAAATAAC
Found at i:37612397 original size:21 final size:21
Alignment explanation
Indices: 37612373--37612425 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
37612363 CATTGTTTCT
*
37612373 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
37612394 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
37612415 AATCTCACCGC
1 AATCTCACCGC
37612426 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:37619028 original size:22 final size:22
Alignment explanation
Indices: 37619003--37619044 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
37618993 GCATCGAAAT
* *
37619003 GAGGCACTGTAGTGCAAATACA
1 GAGGCACTGAAGTGAAAATACA
37619025 GAGGCACTGAAGTGAAAATA
1 GAGGCACTGAAGTGAAAATA
37619045 AAGACACCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.14, G:0.29, T:0.17
Consensus pattern (22 bp):
GAGGCACTGAAGTGAAAATACA
Found at i:37619077 original size:20 final size:20
Alignment explanation
Indices: 37619033--37619078 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
37619023 CAGAGGCACT
*
37619033 GAAGTGAAAATAAAGACACC
1 GAAGTGAAAACAAAGACACC
* * *
37619053 AAAGTGAAAACAAAGTCATC
1 GAAGTGAAAACAAAGACACC
37619073 GAAGTG
1 GAAGTG
37619079 CGATCCAGTA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.13, G:0.22, T:0.13
Consensus pattern (20 bp):
GAAGTGAAAACAAAGACACC
Found at i:37620016 original size:29 final size:30
Alignment explanation
Indices: 37619957--37620014 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37619947 TCCGAGCCTT
*
37619957 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
37619987 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
37620015 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:37620244 original size:13 final size:13
Alignment explanation
Indices: 37620226--37620257 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37620216 TTTCCAGCAA
37620226 TTATGAATTTATT
1 TTATGAATTTATT
37620239 TTATGAATTTATT
1 TTATGAATTTATT
*
37620252 TGATGA
1 TTATGA
37620258 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:37620465 original size:50 final size:50
Alignment explanation
Indices: 37620352--37620593 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
37620342 ATTTGGGTAA
* * *
37620352 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
37620408 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37620458 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37620508 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
37620558 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
37620594 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:37620541 original size:100 final size:103
Alignment explanation
Indices: 37620352--37620601 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
37620342 ATTTGGGTAA
37620352 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
37620417 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
37620458 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
37620520 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
37620558 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
37620602 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:37627610 original size:29 final size:30
Alignment explanation
Indices: 37627551--37627608 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37627541 TCCGAGCCTT
*
37627551 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
37627581 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
37627609 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:37627838 original size:13 final size:13
Alignment explanation
Indices: 37627820--37627851 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37627810 TTTCCAGCAA
37627820 TTATGAATTTATT
1 TTATGAATTTATT
37627833 TTATGAATTTATT
1 TTATGAATTTATT
*
37627846 TGATGA
1 TTATGA
37627852 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:37628059 original size:50 final size:50
Alignment explanation
Indices: 37627946--37628187 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
37627936 ATTTGGGTAA
* * *
37627946 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
37628002 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37628052 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
37628102 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
37628152 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
37628188 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:37628135 original size:100 final size:103
Alignment explanation
Indices: 37627946--37628195 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
37627936 ATTTGGGTAA
37627946 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
37628011 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
37628052 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
37628114 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
37628152 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
37628196 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:37633567 original size:21 final size:21
Alignment explanation
Indices: 37633520--37633567 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
37633510 TTTCGTTTGC
*
37633520 TATTCTGTTTCTTTTCTTCTA
1 TATTTTGTTTCTTTTCTTCTA
* *
37633541 TCTTTTGTTTC-TTTCTTTCTT
1 TATTTTGTTTCTTTTC-TTCTA
37633562 TATTTT
1 TATTTT
37633568 ACTTACTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.06, C:0.17, G:0.04, T:0.73
Consensus pattern (21 bp):
TATTTTGTTTCTTTTCTTCTA
Found at i:37633753 original size:24 final size:25
Alignment explanation
Indices: 37633711--37633757 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
37633701 TATTTGTTAC
* *
37633711 AATTTAATTTATTTTATAACATAAT
1 AATTTAATTAATTTAATAACATAAT
37633736 AATTTAA-TAATTTAATAACATA
1 AATTTAATTAATTTAATAACATA
37633758 TTTTAACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (25 bp):
AATTTAATTAATTTAATAACATAAT
Found at i:37636137 original size:24 final size:23
Alignment explanation
Indices: 37636096--37636142 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
37636086 TATTCATGGG
37636096 ACATTTAAAGTAAGGTAAGTAATA
1 ACATTTAAAGTAAGGTAAG-AATA
*
37636120 ACATTTGAAATTAA-GTAAGAATA
1 ACATTT-AAAGTAAGGTAAGAATA
37636143 TGTGTGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (23 bp):
ACATTTAAAGTAAGGTAAGAATA
Found at i:37636494 original size:21 final size:23
Alignment explanation
Indices: 37636452--37636494 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
37636442 TATTATTCCG
*
37636452 GGTGTGTTTAGGTTGGATATTCT
1 GGTGTGTTTAGGGTGGATATTCT
37636475 GGTGTGTTT-GGGTGGA-ATTC
1 GGTGTGTTTAGGGTGGATATTC
37636495 GCGTATCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 6 0.32
23 9 0.47
ACGTcount: A:0.12, C:0.05, G:0.40, T:0.44
Consensus pattern (23 bp):
GGTGTGTTTAGGGTGGATATTCT
Found at i:37638405 original size:19 final size:19
Alignment explanation
Indices: 37638341--37638407 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
37638331 CATAAGTATT
* *
37638341 TATTTATACACATATTAAA
1 TATTTTTACATATATTAAA
*
37638360 TATTTTT-TATAT-TTATAA
1 TATTTTTACATATATTA-AA
37638378 GTATTTTTTTACATATATTAAA
1 -TA--TTTTTACATATATTAAA
37638400 TATTTTTA
1 TATTTTTA
37638408 AAAATATCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
17 3 0.08
18 5 0.13
19 14 0.37
21 7 0.18
22 6 0.16
23 3 0.08
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.57
Consensus pattern (19 bp):
TATTTTTACATATATTAAA
Found at i:37638405 original size:20 final size:20
Alignment explanation
Indices: 37638347--37638406 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
37638337 TATTTATTTA
*
37638347 TACACATATTAAATATTTTT
1 TACATATATTAAATATTTTT
* * *
37638367 TATATTTA-TAAGTATTTTTT
1 TACATATATTAAATA-TTTTT
37638387 TACATATATTAAATATTTTT
1 TACATATATTAAATATTTTT
37638407 AAAAATATCG
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
19 5 0.16
20 21 0.68
21 5 0.16
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (20 bp):
TACATATATTAAATATTTTT
Found at i:37638961 original size:32 final size:32
Alignment explanation
Indices: 37638899--37638961 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
37638889 CCATAAACTT
* *
37638899 ATAAACTAATTACTTGAATTTAGTAGCTCATG
1 ATAAACTAATTAATTGAATTTAGTAACTCATG
* *
37638931 ATAAATTAATTAATTTAATTT-GATAACTCAT
1 ATAAACTAATTAATTGAATTTAG-TAACTCAT
37638962 ATTGATTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
31 1 0.04
32 25 0.96
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (32 bp):
ATAAACTAATTAATTGAATTTAGTAACTCATG
Found at i:37640522 original size:16 final size:17
Alignment explanation
Indices: 37640491--37640528 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
37640481 GCGTTTCTTC
*
37640491 TTCTTCCATTTCTTTGT
1 TTCTTCCATCTCTTTGT
37640508 TTCTTCCA-CTCTTTGT
1 TTCTTCCATCTCTTTGT
37640524 TTCTT
1 TTCTT
37640529 TCCGACGCCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.05, C:0.26, G:0.05, T:0.63
Consensus pattern (17 bp):
TTCTTCCATCTCTTTGT
Done.