Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 116 of 313
Found at i:37650924 original size:5 final size:6
Alignment explanation
Indices: 37650907--37650948 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
37650897 ATTTTTTTCG
*
37650907 ATAAAA ATAAAA ATAAAA AT-AAA ATAAATA CTAAAA AGTAAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAA-A ATAAAA A-TAAA
37650949 TAGCTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
5 5 0.16
6 17 0.55
7 9 0.29
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:37650932 original size:17 final size:19
Alignment explanation
Indices: 37650910--37650948 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
37650900 TTTTTCGATA
37650910 AAAATAAA-AATAAAAA-T
1 AAAATAAATAATAAAAAGT
*
37650927 AAAATAAATACTAAAAAGT
1 AAAATAAATAATAAAAAGT
37650946 AAA
1 AAA
37650949 TAGCTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 7 0.37
19 4 0.21
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18
Consensus pattern (19 bp):
AAAATAAATAATAAAAAGT
Found at i:37657326 original size:14 final size:15
Alignment explanation
Indices: 37657307--37657349 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
37657297 TTAACCCAAT
37657307 ATTTTATTTATTAA-
1 ATTTTATTTATTAAC
*
37657321 ATTTTATATTTTTAAC
1 ATTTTAT-TTATTAAC
37657337 A-TTTATTTATTAA
1 ATTTTATTTATTAA
37657350 GTTTAGGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.52
15 11 0.44
16 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTTATTTATTAAC
Found at i:37659099 original size:28 final size:28
Alignment explanation
Indices: 37659068--37659132 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
37659058 ATAAAAATTA
37659068 ACCAAAATATTATAAC-TTTTTT-TTATTT
1 ACCAAAATATT-T-ACTTTTTTTATTATTT
37659096 ACCAAAATA-TTACTTTTTTTATTATTT
1 ACCAAAATATTTACTTTTTTTATTATTT
*
37659123 ACGAAAATAT
1 ACCAAAATAT
37659133 ACCAAAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 2 0.06
26 7 0.21
27 15 0.45
28 9 0.27
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (28 bp):
ACCAAAATATTTACTTTTTTTATTATTT
Found at i:37659232 original size:27 final size:27
Alignment explanation
Indices: 37659202--37659280 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
37659192 GGCCAATCGC
* *
37659202 ATTGGCGACACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
* *
37659229 ATTGGTGGCACCAATGGTGCCAAAGTG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
37659256 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAATGGTGCCAAAG
37659281 GACTAAAATG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.30, C:0.22, G:0.32, T:0.16
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGAG
Found at i:37659381 original size:19 final size:19
Alignment explanation
Indices: 37659354--37659423 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
37659344 TCAACTCATT
*
37659354 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
37659373 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
37659391 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
37659410 TTTTAATTTAATAA
1 TTTTAATTTAATAA
37659424 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:37659404 original size:37 final size:37
Alignment explanation
Indices: 37659359--37659429 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
37659349 TCATTTTTTT
37659359 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
37659396 ATTTAATAACTCTATTTTAATTTAATAAACTATT
1 ATTTAATAACTCTATTTTAATTTAATAAACTATT
37659430 AAGTAATACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:37659686 original size:18 final size:19
Alignment explanation
Indices: 37659649--37659687 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37659639 TCAACTCATT
* *
37659649 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACACTA
37659668 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACACTA
37659686 TT
1 TT
37659688 CTCATTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTAATTTAATAACACTA
Found at i:37659694 original size:18 final size:19
Alignment explanation
Indices: 37659654--37659696 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
37659644 TCATTTTTTT
* *
37659654 ATTTAATAACTCTATTTTA
1 ATTTAATAACACTATTCTA
*
37659673 ATTTAATAA-ACTATTCTC
1 ATTTAATAACACTATTCTA
37659691 ATTTAA
1 ATTTAA
37659697 ATTAAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTAATAACACTATTCTA
Found at i:37659756 original size:18 final size:19
Alignment explanation
Indices: 37659693--37659751 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
37659683 CTATTCTCAT
37659693 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
37659712 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
37659730 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
37659749 TTA
1 TTA
37659752 CTTAATTAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:37659865 original size:262 final size:269
Alignment explanation
Indices: 37659286--37660310 Score: 1149
Period size: 295 Copynumber: 3.6 Consensus size: 269
37659276 CAAAGGACTA
37659286 AAATGTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
1 AAATGTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
37659351 ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAATAACTCTATTTTAA
66 ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCA-TT--TAA--C-A-TTTAA
* * * *
37659416 TTTAATAAACTATTAAGTAATACTTAATTTTTTTAAAATTAAAATAGAGTTATTAAATGAGAGAA
124 --TAATAAACTATTAAATAAGACATAA-TTTATT-AAATTAAAATAGAGTTA-T---T-----AA
* * ** * * *
37659481 TTCTAATTAAGTGACCATTTGCAGTTTTAAGGGCCTGACATGCAAATTTACCATTTTGAATTTTG
176 CTCTAATTAA-CGA-CATTTGCAGGCTTAA-GGACAGAAATGCAAATTTACCATTTTGAATTTTG
*
37659546 AAAGTGAATTGCTACTGCTGTGCGCACTAAAATTG
238 AAAGTGAATTG---CTGTTGTGCGCACTAAAATTG
*
37659581 AAATGTGGCTAATTGTCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
1 AAATGTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
37659646 ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAA-A-TTAA-AATAGA
66 ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAACATTTAATAATA-A
** * *
37659708 GTTATTAAATGAGA-ATAGTTTATTAAATTAAAATAGAGTTATT-ACT-TAATT-A-GA-ATTCT
130 ACTATTAAATAAGACATAATTTATTAAATTAAAATAGAGTTATTAACTCTAATTAACGACATT-T
*
37659767 AAGGAGGGCTT-A-GA-AGAAATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTGCTGTTGT
194 --GCA-GGCTTAAGGACAGAAATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTGCTGTTGT
37659829 GCGCACTAAAATTG
256 GCGCACTAAAATTG
37659843 AAATGTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
1 AAATGTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
37659908 A-TTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAATAACTCTATTTTAA
66 ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCA-TT--TAA--C-A-TTTAA
* * * * *
37659972 TTTAATAAACTATTAAGTAATACTTAATTTTTTAAATTAAAATAGAGTTATTAATTCTAATTAAC
124 --TAATAAACTATTAAATAAGACATAATTTATTAAATTAAAATAGAGTTATTAACTCTAATTAAC
** * *
37660037 TGACCATTTGCAGTTTTAAGGACCTGACATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTG
187 -GA-CATTTGCAGGCTTAAGGA-CAGAAATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTG
37660102 CTGCTGCTGTGCGCACTAAAATTG
249 CTG-T--TGTGCGCACTAAAATTG
37660126 AAATGTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
1 AAATGTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
* *
37660191 GTTTTTTTATTTAATATCTCTATTTTAATTTAATAAACTATTCTCATTTAATAACTCTATTTTAA
66 ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCA-TT--TAA--C-A-TTTAA
* * * *
37660256 TTTAATAAACTATTAAGTAATACTTAATTTTTTTAAATTAAAATAGAAGTTATTA
124 --TAATAAACTATTAAATAAGACATAA-TTTATTAAATTAAAATAG-AGTTATTA
37660311 TTAAATTAAA
Statistics
Matches: 661, Mismatches: 34, Indels: 79
0.85 0.04 0.10
Matches are distributed among these distances:
261 44 0.07
262 87 0.13
264 3 0.00
265 42 0.06
266 2 0.00
267 2 0.00
268 4 0.01
269 4 0.01
270 9 0.01
271 2 0.00
272 10 0.02
273 30 0.05
274 2 0.00
275 5 0.01
276 4 0.01
277 4 0.01
278 4 0.01
279 1 0.00
280 46 0.07
281 18 0.03
282 5 0.01
283 88 0.13
284 99 0.15
285 18 0.03
286 12 0.02
288 1 0.00
292 3 0.00
294 2 0.00
295 110 0.17
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (269 bp):
AAATGTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC
ATTTTTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAACATTTAATAATAAA
CTATTAAATAAGACATAATTTATTAAATTAAAATAGAGTTATTAACTCTAATTAACGACATTTGC
AGGCTTAAGGACAGAAATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTGCTGTTGTGCGCA
CTAAAATTG
Found at i:37659932 original size:19 final size:19
Alignment explanation
Indices: 37659910--37659979 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
37659900 TTCAACTCAT
*
37659910 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
37659929 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
37659947 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
37659966 TTTTAATTTAATAA
1 TTTTAATTTAATAA
37659980 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:37659959 original size:37 final size:37
Alignment explanation
Indices: 37659915--37659985 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
37659905 CTCATTTTTT
37659915 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
37659952 ATTTAATAACTCTATTTTAATTTAATAAACTATT
1 ATTTAATAACTCTATTTTAATTTAATAAACTATT
37659986 AAGTAATACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:37660158 original size:283 final size:283
Alignment explanation
Indices: 37659785--37660310 Score: 986
Period size: 284 Copynumber: 1.9 Consensus size: 283
37659775 CTTAGAAGAA
37659785 ATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTGCTGTTGTGCGCACTAAAATTGAAATGTG
1 ATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTGCTGTTGTGCGCACTAAAATTGAAATGTG
37659850 GCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTC-ATTTTT
66 GCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTCGATTTTT
37659914 TATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAATAACTCTATTTTAATTTAATA
131 TATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAATAACTCTATTTTAATTTAATA
37659979 AACTATTAAGTAATACTTAA-TTTTTTAAATTAAAATAG-AGTTATTAATTCTAATTAACTGACC
196 AACTATTAAGTAATACTTAATTTTTTTAAATTAAAATAGAAGTTATTAATTCTAATTAACTGACC
37660042 ATTTGCAGTTTTAAGGACCTGAC
261 ATTTGCAGTTTTAAGGACCTGAC
37660065 ATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTGCTGCTGCTGTGCGCACTAAAATTGAAAT
1 ATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTGCTG-T--TGTGCGCACTAAAATTGAAAT
*
37660130 GTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTCGTTT
63 GTGGCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTCGATT
*
37660195 TTTTATTTAATATCTCTATTTTAATTTAATAAACTATTCTCATTTAATAACTCTATTTTAATTTA
128 TTTTATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAATAACTCTATTTTAATTTA
37660260 ATAAACTATTAAGTAATACTTAATTTTTTTAAATTAAAATAGAAGTTATTA
193 ATAAACTATTAAGTAATACTTAATTTTTTTAAATTAAAATAGAAGTTATTA
37660311 TTAAATTAAA
Statistics
Matches: 238, Mismatches: 2, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
280 40 0.17
281 1 0.00
283 82 0.34
284 89 0.37
285 18 0.08
286 8 0.03
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (283 bp):
ATGCAAATTTACCATTTTGAATTTTGAAAGTGAATTGCTGTTGTGCGCACTAAAATTGAAATGTG
GCTAATTGCCTTCTAAGCCCTCCTTATTTATTATTTTCTTTTTATTCCCCTTCAACTCGATTTTT
TATTTAATAACTCTATTTTAATTTAATAAACTATTCTCATTTAATAACTCTATTTTAATTTAATA
AACTATTAAGTAATACTTAATTTTTTTAAATTAAAATAGAAGTTATTAATTCTAATTAACTGACC
ATTTGCAGTTTTAAGGACCTGAC
Found at i:37660231 original size:18 final size:18
Alignment explanation
Indices: 37660210--37660269 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
37660200 TTTAATATCT
37660210 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
* * *
37660228 CTATTCTCATTTAATAACT
1 CTATTTTAATTTAATAA-A
37660247 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
37660265 CTATT
1 CTATT
37660270 AAGTAATACT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
18 20 0.57
19 15 0.43
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (18 bp):
CTATTTTAATTTAATAAA
Found at i:37660249 original size:37 final size:37
Alignment explanation
Indices: 37660199--37660269 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
37660189 TCGTTTTTTT
*
37660199 ATTTAATATCTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
37660236 ATTTAATAACTCTATTTTAATTTAATAAACTATT
1 ATTTAATAACTCTATTTTAATTTAATAAACTATT
37660270 AAGTAATACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:37660263 original size:19 final size:19
Alignment explanation
Indices: 37660194--37660263 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 19
37660184 TCAACTCGTT
* *
37660194 TTTTTATTTAATATCTCTA
1 TTTTAATTTAATAACTCTA
*
37660213 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
37660231 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
37660250 TTTTAATTTAATAA
1 TTTTAATTTAATAA
37660264 ACTATTAAGT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
18 15 0.36
19 27 0.64
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:37660314 original size:23 final size:22
Alignment explanation
Indices: 37660288--37660332 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 22
37660278 CTTAATTTTT
37660288 TTAAATTAAAATAGAAGTTATTA
1 TTAAATTAAAATAG-AGTTATTA
37660311 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
37660333 AATGAGAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (22 bp):
TTAAATTAAAATAGAGTTATTA
Found at i:37660333 original size:37 final size:37
Alignment explanation
Indices: 37660292--37660369 Score: 108
Period size: 37 Copynumber: 2.1 Consensus size: 37
37660282 ATTTTTTTAA
37660292 ATTAAAAT-AGAAGTTA-TTATTAAATTAAAATAGAGTT
1 ATTAAAATGAGAA--TAGTTATTAAATTAAAATAGAGTT
37660329 ATT-AAATGAGAATAGTTTATTAAATTAAAATAGAGTT
1 ATTAAAATGAGAATAG-TTATTAAATTAAAATAGAGTT
37660366 ATTA
1 ATTA
37660370 CTTAATTAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
35 2 0.05
36 4 0.11
37 31 0.84
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (37 bp):
ATTAAAATGAGAATAGTTATTAAATTAAAATAGAGTT
Found at i:37660374 original size:18 final size:19
Alignment explanation
Indices: 37660288--37660369 Score: 94
Period size: 19 Copynumber: 4.2 Consensus size: 19
37660278 CTTAATTTTT
37660288 TTAAATTAAAATAGAAGTTATTA
1 TTAAATTAAAATAG-AG---TTA
37660311 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
37660330 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
37660348 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
37660367 TTA
1 TTA
37660370 CTTAATTAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
18 15 0.29
19 21 0.40
22 2 0.04
23 14 0.27
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:37660606 original size:37 final size:37
Alignment explanation
Indices: 37660564--37660634 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
37660554 AGCATTACTT
37660564 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
37660601 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
37660635 AAAAAAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.39
Consensus pattern (37 bp):
AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
Found at i:37660639 original size:19 final size:19
Alignment explanation
Indices: 37660570--37660638 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
37660560 ACTTAATAGT
37660570 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * *
37660589 TTATTAAATGAGAATAG-T
1 TTATTAAATTAAAATAGAG
37660607 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
37660626 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
37660639 AAATGAGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 20 0.47
19 23 0.53
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:37660744 original size:27 final size:27
Alignment explanation
Indices: 37660713--37660764 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
37660703 CATTTTAGTC
37660713 CTTTGGCACCATTGGTGCCACCAATCT
1 CTTTGGCACCATTGGTGCCACCAATCT
* *
37660740 CTTTGGCACCTTTGGTGCCGCCAAT
1 CTTTGGCACCATTGGTGCCACCAAT
37660765 GTGATTGGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.15, C:0.33, G:0.21, T:0.31
Consensus pattern (27 bp):
CTTTGGCACCATTGGTGCCACCAATCT
Found at i:37660772 original size:27 final size:27
Alignment explanation
Indices: 37660715--37660773 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
37660705 TTTTAGTCCT
*
37660715 TTGGCACCATTGGTGCCACCAATCTCT
1 TTGGCACCATTGGTGCCACCAATCTCA
* * * *
37660742 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCACCAATCTCA
37660769 TTGGC
1 TTGGC
37660774 CTGATCAGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.29, G:0.25, T:0.31
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCACCAATCTCA
Found at i:37660876 original size:27 final size:24
Alignment explanation
Indices: 37660824--37660884 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 24
37660814 TTTTTTTGGT
* *
37660824 ATATTTTCGTAAATAAAAAAAGTA
1 ATATTTTGGTAAATAAAAAAAATA
37660848 ATATTTTGGTAAATAAAAAAAATTATA
1 ATATTTTGGTAAAT-AAAAAAA--ATA
37660875 ATATTTTGGT
1 ATATTTTGGT
37660885 TAATTTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 13 0.41
25 7 0.22
27 12 0.38
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (24 bp):
ATATTTTGGTAAATAAAAAAAATA
Found at i:37661273 original size:19 final size:20
Alignment explanation
Indices: 37661251--37661316 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 20
37661241 AATAAATTCT
*
37661251 AAAATTTATAT-TTTTAAAA
1 AAAATTTATATAATTTAAAA
37661270 AAAA-TTATATAATTTAAAA
1 AAAATTTATATAATTTAAAA
* * * *
37661289 AAAATCTAAAGAATATATAAA
1 AAAATTTATATAATTTA-AAA
37661310 AAAATTT
1 AAAATTT
37661317 GAAAATTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
18 6 0.16
19 15 0.39
20 8 0.21
21 9 0.24
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATTTATATAATTTAAAA
Found at i:37670041 original size:18 final size:18
Alignment explanation
Indices: 37670014--37670106 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
37670004 TACGACCGTT
37670014 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
37670032 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
37670050 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
37670068 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
37670086 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
37670104 TAC
1 TAC
37670107 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:37678607 original size:31 final size:32
Alignment explanation
Indices: 37678558--37678626 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 32
37678548 TTTAAAGGTG
*
37678558 TATAA-TTAAATCAAAATTAAAATTTTAAGTA
1 TATAATTTAAACCAAAATTAAAATTTTAAGTA
* * * *
37678589 TA-AATTTAAACCACAATTAGAGTTTTATGTA
1 TATAATTTAAACCAAAATTAAAATTTTAAGTA
37678620 TATAATT
1 TATAATT
37678627 GAACCAATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 2 0.06
31 25 0.81
32 4 0.13
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.41
Consensus pattern (32 bp):
TATAATTTAAACCAAAATTAAAATTTTAAGTA
Found at i:37686866 original size:90 final size:90
Alignment explanation
Indices: 37686713--37686888 Score: 289
Period size: 90 Copynumber: 2.0 Consensus size: 90
37686703 GAGTTGAGGT
* * * *
37686713 TACAAAATTAATGCGACGAATAACATGTAACTCATAAATGATAAGTTTTGAATGGTCGTTTCCAT
1 TACAAAATTAATGCAACAAATAACATATAACTCATAAATGATAAGTTCTGAATGGTCGTTTCCAT
37686778 CCAACATACGTTGCTTTTGTAGTCC
66 CCAACATACGTTGCTTTTGTAGTCC
* *
37686803 TACAAAATTAATGCAACAAATAACATATAACTCGTAAATGATAAGTTCTGAATGGTCTTTTCCAT
1 TACAAAATTAATGCAACAAATAACATATAACTCATAAATGATAAGTTCTGAATGGTCGTTTCCAT
*
37686868 CCAACATATGTTGCTTTTGTA
66 CCAACATACGTTGCTTTTGTA
37686889 ATCCAGGTAC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 79 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (90 bp):
TACAAAATTAATGCAACAAATAACATATAACTCATAAATGATAAGTTCTGAATGGTCGTTTCCAT
CCAACATACGTTGCTTTTGTAGTCC
Found at i:37689288 original size:24 final size:24
Alignment explanation
Indices: 37689242--37689294 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
37689232 CTGTATCTTT
*
37689242 TTAATAATAATTATTAAATAATTA
1 TTAATAATAATAATTAAATAATTA
*
37689266 TTAATAA-AATAATTAATTCAATTA
1 TTAATAATAATAATTAAAT-AATTA
37689290 TTAAT
1 TTAAT
37689295 CTAAATCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 9 0.35
24 17 0.65
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
TTAATAATAATAATTAAATAATTA
Found at i:37691151 original size:48 final size:49
Alignment explanation
Indices: 37691086--37691689 Score: 561
Period size: 50 Copynumber: 12.5 Consensus size: 49
37691076 TACAAAAATT
* * * * *
37691086 GAAAAAAAAA-TTGGGTGTTGGCCTATCAATGACCAGTACCAGTA-TAC
1 GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* * *
37691133 GAAAAAAAAATTTAGGTG-TTGCCTTGTCAATGGCCGGAACCAGTA-TAC
1 GAAAAAAAAATTTGGGTGCTGGCC-TGTCAATGGCCGGCACCAGTAGTAC
* * * * **
37691181 GAAAAAAAATTTTGGGTGCTAGCTTGTCAATGGCTGGCACCACCAGTAC
1 GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* * * * *
37691230 GAAACAAAAAAATTGGGTGCTGGACTATCAATGGCCTGCACCAGCAGTAC
1 GAAA-AAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* * * **
37691280 AAAAAAAAAATTTTGTGTGCTGGCCTATCAATGGCCGGCACCACCAGTAC
1 GAAAAAAAAA-TTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* *
37691330 GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGTCGGCACCAGCAGTAC
1 GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* * ** *
37691379 --AAAAAAAATGTTGGGGTGCTGGCTTGTCAATGGTCGGCACCAACAATAC
1 GAAAAAAAAAT-TT-GGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* *
37691428 GGAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGTCGGCACCAGTA-TAC
1 -GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* * * *
37691477 -AAAAAAAAATTTGGGTGCTGACCTGTTAATGGTCTGCACCAGTA-TAC
1 GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* ** * *
37691524 GAAAAAAAAATTTGAGTGCCAGCCTGTCAATGGACGACACCAGTAGTAC
1 GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* * *
37691573 GAAAAAAGAAATTTAGGTGCTGGCCTGTCAATGGCCGGCACTAGTAG-AT
1 GAAAAAA-AAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* * * * * * *
37691622 G-AAAAAAAA-CTGGGTGCTGGCCTGTTAATCGTCAGCACTAG-CGTA-
1 GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
* *
37691667 TAAAAAAAAATTTTGGTGCTGGC
1 GAAAAAAAAATTTGGGTGCTGGC
37691690 AATTTATCAA
Statistics
Matches: 469, Mismatches: 71, Indels: 34
0.82 0.12 0.06
Matches are distributed among these distances:
45 1 0.00
46 35 0.07
47 79 0.17
48 102 0.22
49 99 0.21
50 143 0.30
51 2 0.00
52 8 0.02
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.23
Consensus pattern (49 bp):
GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC
Found at i:37691265 original size:98 final size:97
Alignment explanation
Indices: 37691130--37691689 Score: 523
Period size: 98 Copynumber: 5.8 Consensus size: 97
37691120 AGTACCAGTA
* * *
37691130 TACGAAAAAAAAATTTAGGTG-TTGCCTTGTCAATGGCCGGAACCAGTA-TACGAAAAAAAATTT
1 TACGAAAAAAAAATTTGGGTGCTGGCC-TGTCAATGGCCGGCACCAGTAGTAC-AAAAAAAATTT
* *
37691193 TGGGTGCTAGCTTGTCAATGGCTGGCACCACCAG
64 TGGGTGCTGGCCTGTCAATGGCTGGCACCACCAG
* * * * *
37691227 TACGAAACAAAAAAATTGGGTGCTGGACTATCAATGGCCTGCACCAGCAGTACAAAAAAAAAATT
1 TACGAAA-AAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC--AAAAAAAATT
* * *
37691292 TTGTGTGCTGGCCTATCAATGGCCGGCACCACCAG
63 TTGGGTGCTGGCCTGTCAATGGCTGGCACCACCAG
* * *
37691327 TACGAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGTCGGCACCAGCAGTACAAAAAAAATGTTG
1 TACGAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTACAAAAAAAAT-TTT
* * *
37691392 GGGTGCTGGCTTGTCAATGG-TCGGCACCAACAA
65 GGGTGCTGGCCTGTCAATGGCT-GGCACCACCAG
* * *
37691425 TACGGAAAAAAAATTTTGGGTGCTGGCCTGTCAATGGTCGGCACCAGTA-TACAAAAAAAAATTT
1 TAC-GAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTACAAAAAAAATTTT
* * **
37691489 GGGTGCTGACCTGTTAATGGTCT-GCACCAGTA-
65 GGGTGCTGGCCTGTCAATGG-CTGGCACCACCAG
* ** * * *
37691521 TACGAAAAAAAAATTTGAGTGCCAGCCTGTCAATGGACGACACCAGTAGTACGAAAAAAGAAATT
1 TACGAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTAC-AAAAAA-AATTT
* * * **
37691586 TAGGTGCTGGCCTGTCAATGGCCGGCACTAGTAG
64 TGGGTGCTGGCCTGTCAATGGCTGGCACCACCAG
* * * * * * *
37691620 -ATG-AAAAAAAA-CTGGGTGCTGGCCTGTTAATCGTCAGCACTAGCGTA-TA-AAAAAAAATTT
1 TACGAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCA--GTAGTACAAAAAAAATTT
37691680 T-GGTGCTGGC
64 TGGGTGCTGGC
37691690 AATTTATCAA
Statistics
Matches: 389, Mismatches: 58, Indels: 36
0.81 0.12 0.07
Matches are distributed among these distances:
93 9 0.02
94 5 0.01
95 45 0.12
96 27 0.07
97 59 0.15
98 107 0.28
99 90 0.23
100 47 0.12
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (97 bp):
TACGAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCAGTAGTACAAAAAAAATTTTG
GGTGCTGGCCTGTCAATGGCTGGCACCACCAG
Found at i:37694660 original size:21 final size:23
Alignment explanation
Indices: 37694636--37694697 Score: 74
Period size: 21 Copynumber: 2.7 Consensus size: 23
37694626 AAAGTAAATT
37694636 AAATTTTAA-TGAAATGAGG-GA
1 AAATTTTAATTGAAATGAGGAGA
*
37694657 AAATTTTAATTTAAATGAGGAGAAA
1 AAATTTTAATTGAAATGAGGAG--A
37694682 AAATTTTGAATTGAAA
1 AAATTTT-AATTGAAA
37694698 ATAGAAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 9 0.26
22 9 0.26
23 1 0.03
25 8 0.24
26 7 0.21
ACGTcount: A:0.50, C:0.00, G:0.18, T:0.32
Consensus pattern (23 bp):
AAATTTTAATTGAAATGAGGAGA
Found at i:37694804 original size:19 final size:19
Alignment explanation
Indices: 37694782--37694821 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
37694772 CGGAAAAAGT
*
37694782 TAAATTTAAATTAAAAAAA
1 TAAATTGAAATTAAAAAAA
*
37694801 TAAATTGAAATTGAAAAAA
1 TAAATTGAAATTAAAAAAA
37694820 TA
1 TA
37694822 TATATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
TAAATTGAAATTAAAAAAA
Found at i:37698756 original size:95 final size:94
Alignment explanation
Indices: 37698627--37698839 Score: 266
Period size: 95 Copynumber: 2.2 Consensus size: 94
37698617 GACTATTAGA
* * **
37698627 AGGCCAGCACCTACTTTTTTTTCGTACTGCTGGTGCCGGCCATTGACAGGCTTGCACCCAAATTT
1 AGGCTAGCACCCA-TTTTTTTTCGTACTGCTGGTGCCGGCCATTGACAGGCCAGCACCCAAATTT
*
37698692 TTTTTTCGTACTACTGGTG-TCGCCCATTGAC
65 TTTTTTCGTA-TACTGCTGCT-GCCCATTGAC
* * * *
37698723 AGGCTAGCACCCATTTTTTTTCGTATTGGTGGTGCCGGCTATTGACAGGCCAGCACCTAAATTTT
1 AGGCTAGCACCCATTTTTTTTCGTACTGCTGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTT
*
37698788 TTTTTCGTATACTGCTGCTGGCCATTGAC
66 TTTTTCGTATACTGCTGCTGCCCATTGAC
* *
37698817 AAGTTAGCACCCAAATTTTTTTT
1 AGGCTAGCACCC--ATTTTTTTT
37698840 TTTTTTTAAA
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
94 26 0.25
95 56 0.55
96 20 0.20
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (94 bp):
AGGCTAGCACCCATTTTTTTTCGTACTGCTGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTT
TTTTTCGTATACTGCTGCTGCCCATTGAC
Found at i:37698841 original size:49 final size:49
Alignment explanation
Indices: 37698641--37698840 Score: 246
Period size: 49 Copynumber: 4.2 Consensus size: 49
37698631 CAGCACCTAC
* *
37698641 TTTTTTTTCGTACTGCTGGTGCCGGCCATTGACAGGCTTGCACCCAAAT
1 TTTTTTTTCGTACTACTGGTGCCGGCCATTGACAGGCTAGCACCCAAAT
* *
37698690 TTTTTTTTCGTACTACTGGTGTCGCCCATTGACAGGCTAGCACCC--A-
1 TTTTTTTTCGTACTACTGGTGCCGGCCATTGACAGGCTAGCACCCAAAT
* ** * * *
37698736 TTTTTTTTCGTATTGGTGGTGCCGGCTATTGACAGGCCAGCACCTAAAT
1 TTTTTTTTCGTACTACTGGTGCCGGCCATTGACAGGCTAGCACCCAAAT
* * * *
37698785 TTTTTTTTCGTA-TACTGCTGCTGGCCATTGACAAGTTAGCACCCAAAT
1 TTTTTTTTCGTACTACTGGTGCCGGCCATTGACAGGCTAGCACCCAAAT
37698833 TTTTTTTT
1 TTTTTTTT
37698841 TTTTTTAAAT
Statistics
Matches: 127, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
46 37 0.29
47 1 0.01
48 36 0.28
49 53 0.42
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (49 bp):
TTTTTTTTCGTACTACTGGTGCCGGCCATTGACAGGCTAGCACCCAAAT
Found at i:37706252 original size:197 final size:196
Alignment explanation
Indices: 37705892--37706257 Score: 418
Period size: 197 Copynumber: 1.9 Consensus size: 196
37705882 ATTTGCTAAG
* * * * * * **
37705892 GCCTCTTAATGCCCGAACTCGCTAAAAAGCACTACCAATGAAGGAATTACCCAACAACAATGGTC
1 GCCTCTTAAGGCCCCAACTAGCTAAAAAGCACTACCAACGAAGCAACTACCCAACAACAATGAAC
* * * *
37705957 TTCCAAAGACCCTAATGTTGTTTTTGGTAAAGCCTTTTAAGGCTCTAGTGTTCTGCCAGGTAAGG
66 TTCCAAAGACCCTAATGTTGTTTTTGGTAAAGCCTTTTAAAGCTCTAGTGCTCTGCCAAGCAAGG
**
37706022 CCTCTTAAGGCCCTAAACTGACTTCTGGCGTAGGCCTTTCGAGTGCCTTATTATTGTTTTCAACA
131 CCTCTTAAGGCCCT-AACTGACTTCCAGCGTAGGCCTTTCGAGTGCCTTATTATTGTTTTCAACA
37706087 AA
195 AA
* * *
37706089 GCCTCTTAAGGCCCCAACTAGCTAAAAAGTGACTACCAACGAAGCAACTATCTAACAACAAT-AA
1 GCCTCTTAAGGCCCCAACTAGCTAAAAAG-CACTACCAACGAAGCAACTACCCAACAACAATGAA
* * * *
37706153 CTTGCC-AAGGCCCTAGTG-TGATTTTTGGTGAAGCCTTTTAAAGCTCTAGTGC-CTCGTCAAGC
65 CTT-CCAAAGACCCTAATGTTG-TTTTTGGTAAAGCCTTTTAAAGCTCTAGTGCTCT-GCCAAGC
* * *
37706215 GAGGCCTCTTAAGGCCCT-AGTGCCATTTCCAGCGTAGGCCTTT
127 AAGGCCTCTTAAGGCCCTAACTG--ACTTCCAGCGTAGGCCTTT
37706258 TGAGGGATCC
Statistics
Matches: 139, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
195 3 0.02
196 4 0.03
197 104 0.75
198 28 0.20
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (196 bp):
GCCTCTTAAGGCCCCAACTAGCTAAAAAGCACTACCAACGAAGCAACTACCCAACAACAATGAAC
TTCCAAAGACCCTAATGTTGTTTTTGGTAAAGCCTTTTAAAGCTCTAGTGCTCTGCCAAGCAAGG
CCTCTTAAGGCCCTAACTGACTTCCAGCGTAGGCCTTTCGAGTGCCTTATTATTGTTTTCAACAA
A
Found at i:37706614 original size:60 final size:60
Alignment explanation
Indices: 37706518--37706664 Score: 163
Period size: 60 Copynumber: 2.5 Consensus size: 60
37706508 ATAAAGACAG
* * * * * *
37706518 CATTGGAGAGTTCATTGTATATGTACCCTTATGGAGTTCACTCA-T-TGATACGAACCCCTT
1 CATTGGAGAGTTCATTATATATCTATCCTTACGGAGTTAACTCACTCAGATA--AACCCCTT
* ** *
37706578 CATTGGAGAGTTCATTATGTATCTATTGTTACGGAGTTAACTCACTCAGGTAAACCCCTT
1 CATTGGAGAGTTCATTATATATCTATCCTTACGGAGTTAACTCACTCAGATAAACCCCTT
*
37706638 CATTGAAGAGTTCATTATATATCTATC
1 CATTGGAGAGTTCATTATATATCTATC
37706665 TTTTTTATTC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
60 68 0.94
61 1 0.01
62 3 0.04
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (60 bp):
CATTGGAGAGTTCATTATATATCTATCCTTACGGAGTTAACTCACTCAGATAAACCCCTT
Found at i:37708855 original size:12 final size:11
Alignment explanation
Indices: 37708827--37708878 Score: 56
Period size: 12 Copynumber: 4.8 Consensus size: 11
37708817 ATATACTAAA
*
37708827 TAAAATAATAA
1 TAAAATAATAT
37708838 TAAAATAATATT
1 TAAAATAATA-T
37708850 TAAAAT-A-A-
1 TAAAATAATAT
37708858 TAAAATAATATT
1 TAAAATAATA-T
37708870 TAAAATAAT
1 TAAAATAAT
37708879 TAATCTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
8 6 0.17
9 1 0.03
10 2 0.06
11 11 0.31
12 15 0.43
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAAATAATAT
Found at i:37708858 original size:20 final size:20
Alignment explanation
Indices: 37708833--37708878 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
37708823 TAAATAAAAT
37708833 AATAATAAAATAATATTTAA
1 AATAATAAAATAATATTTAA
37708853 AATAATAAAATAATATTTAA
1 AATAATAAAATAATATTTAA
37708873 AATAAT
1 AATAAT
37708879 TAATCTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
AATAATAAAATAATATTTAA
Found at i:37709342 original size:23 final size:23
Alignment explanation
Indices: 37709313--37709361 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
37709303 CTTTCTTAAT
* **
37709313 GTAGTAATTTTCGAGGTATTACA
1 GTAGTAATTTTCAAAATATTACA
37709336 GTAGTAATTTTCAAAATATTACA
1 GTAGTAATTTTCAAAATATTACA
37709359 GTA
1 GTA
37709362 TATATAGTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (23 bp):
GTAGTAATTTTCAAAATATTACA
Found at i:37713308 original size:11 final size:11
Alignment explanation
Indices: 37713292--37713336 Score: 54
Period size: 11 Copynumber: 3.7 Consensus size: 11
37713282 ATATTTTTAA
37713292 AAAAATTATAT
1 AAAAATTATAT
37713303 AAAAATAATAATAAT
1 AAAAAT--T-AT-AT
37713318 AAAAATTATAT
1 AAAAATTATAT
37713329 AAAAATTA
1 AAAAATTA
37713337 ATACGGTCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
11 16 0.53
12 2 0.07
13 2 0.07
14 2 0.07
15 8 0.27
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAAATTATAT
Found at i:37713808 original size:26 final size:26
Alignment explanation
Indices: 37713777--37713853 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 26
37713767 GCCCATTTTT
* *
37713777 AATAAACATTAAAAAATTATTTTAAA
1 AATAAAAATTAAAAAAATATTTTAAA
** *
37713803 AATAAAAAATTTTAAAAGTA-TTTAAA
1 AAT-AAAAATTAAAAAAATATTTTAAA
*
37713829 ATTAAAAATTAAAAAAATATATTTA
1 AATAAAAATTAAAAAAATAT-TTTA
37713854 TTATATTCGG
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
25 13 0.32
26 11 0.28
27 16 0.40
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (26 bp):
AATAAAAATTAAAAAAATATTTTAAA
Found at i:37713851 original size:27 final size:27
Alignment explanation
Indices: 37713779--37713853 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 27
37713769 CCATTTTTAA
* *
37713779 TAAACATTAAAAAATTAT-TTTAAAAAT
1 TAAAAATTAAAAAAATATATTT-AAAAT
* ** *
37713806 AAAAAATT-TTAAAA-GTATTTAAAAT
1 TAAAAATTAAAAAAATATATTTAAAAT
37713831 TAAAAATTAAAAAAATATATTTA
1 TAAAAATTAAAAAAATATATTTA
37713854 TTATATTCGG
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
25 13 0.37
26 10 0.29
27 12 0.34
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (27 bp):
TAAAAATTAAAAAAATATATTTAAAAT
Found at i:37720944 original size:5 final size:6
Alignment explanation
Indices: 37720928--37720953 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
37720918 ACTAAATTCT
37720928 TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TA
37720954 GAGGGACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:37723071 original size:43 final size:42
Alignment explanation
Indices: 37723022--37723139 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 42
37723012 ATAATTTCGT
*
37723022 TGAACTTGAGTGATTCAGATTGTGATTAATATATATTTTCGGA
1 TGAACTTAAGTGATTCAGATTGTGATTAATATATATTTT-GGA
* * *
37723065 TGAACTTAAGTGATTCAGATTGTGATCAAATATGTATTTTTGA
1 TGAACTTAAGTGATTCAGATTGTGAT-TAATATATATTTTGGA
* *
37723108 TGAACTTTTAAGTGACTCAAATTGTGATTAAT
1 TGAAC--TTAAGTGATTCAGATTGTGATTAAT
37723140 TTTGGGGTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
43 32 0.49
44 14 0.22
45 19 0.29
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.42
Consensus pattern (42 bp):
TGAACTTAAGTGATTCAGATTGTGATTAATATATATTTTGGA
Found at i:37742747 original size:46 final size:46
Alignment explanation
Indices: 37742646--37742971 Score: 410
Period size: 46 Copynumber: 7.6 Consensus size: 46
37742636 TACGTATGAT
*
37742646 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
37742689 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
37742735 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAA
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
37742781 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-A-G----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
37742817 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
37742863 CACTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A-G----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
* *
37742899 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
37742945 CACTTATCACTTTGTCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
37742972 AGTACTCAAA
Statistics
Matches: 249, Mismatches: 11, Indels: 43
0.82 0.04 0.14
Matches are distributed among these distances:
36 57 0.23
38 5 0.02
39 1 0.00
40 4 0.02
41 4 0.02
42 4 0.02
43 11 0.04
44 10 0.04
45 20 0.08
46 133 0.53
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:37742822 original size:36 final size:36
Alignment explanation
Indices: 37742781--37742935 Score: 175
Period size: 36 Copynumber: 4.0 Consensus size: 36
37742771 CTAAGGCTAA
37742781 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
*
37742817 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG
* *
37742859 CTACCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
1 ----CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
* *
37742899 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
37742935 C
1 C
37742936 TAAAGCTACC
Statistics
Matches: 103, Mismatches: 6, Indels: 20
0.80 0.05 0.16
Matches are distributed among these distances:
36 64 0.62
38 3 0.03
40 3 0.03
42 3 0.03
44 2 0.02
46 28 0.27
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:37742872 original size:82 final size:82
Alignment explanation
Indices: 37742735--37742971 Score: 429
Period size: 82 Copynumber: 2.9 Consensus size: 82
37742725 CTAAGGCTAC
* * * *
37742735 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
37742800 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
37742817 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
*
37742882 TGATCAGATAAGTGTAG
66 TGATCAGATAAGTATAG
37742899 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
37742964 TGATCAGA
66 TGATCAGA
37742972 AGTACTCAAA
Statistics
Matches: 150, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
82 150 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (82 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
TGATCAGATAAGTATAG
Found at i:37742949 original size:128 final size:133
Alignment explanation
Indices: 37742646--37742971 Score: 416
Period size: 128 Copynumber: 2.5 Consensus size: 133
37742636 TACGTATGAT
* *
37742646 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
*
37742709 GATCAGATAAGTGTAGCTAAGGCTACCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTA
66 GATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTCTCACTTGATCAGATAAG-GTAGCTA
37742774 AGGCTAA
130 AGG---A
*
37742781 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-AG----CACTTATCACTTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
* *
37742837 GATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCTTGATCAGATAA-GT-G-T-A
66 GATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTCTCACTTGATCAGATAAGGTAGCTAA
37742898 -G-
131 GGA
* *
37742899 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTGTCACT
37742964 TGATCAGA
65 TGATCAGA
37742972 AGTACTCAAA
Statistics
Matches: 170, Mismatches: 9, Indels: 31
0.81 0.04 0.15
Matches are distributed among these distances:
118 29 0.17
120 3 0.02
122 2 0.01
123 1 0.01
124 3 0.02
125 1 0.01
126 2 0.01
128 97 0.57
132 1 0.01
133 1 0.01
135 13 0.08
136 5 0.03
137 12 0.07
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (133 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTGTCACTT
GATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTCTCACTTGATCAGATAAGGTAGCTAA
GGA
Found at i:37752846 original size:24 final size:24
Alignment explanation
Indices: 37752819--37752865 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
37752809 GGTTTAAGCT
*
37752819 ATGTTTTGGTATGTAGT-TTAGTTA
1 ATGTTGTGGTATGT-GTATTAGTTA
37752843 ATGTTGTGGTATGTGTATTAGTT
1 ATGTTGTGGTATGTGTATTAGTT
37752866 TTAAAGCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (24 bp):
ATGTTGTGGTATGTGTATTAGTTA
Found at i:37755861 original size:44 final size:44
Alignment explanation
Indices: 37755798--37755888 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
37755788 AACTTTGTTT
* *
37755798 TTAGTTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTAATTAATGTAGGTTATTTTAATA
37755842 TTAGTTTCCCACTTAAACTCTAATTAATGTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTAATTAATGTAGGTTATTTTAATA
37755886 TTA
1 TTA
37755889 TTTGACCTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (44 bp):
TTAGTTTCCCACTTAAACTCTAATTAATGTAGGTTATTTTAATA
Found at i:37757043 original size:97 final size:96
Alignment explanation
Indices: 37756876--37757105 Score: 399
Period size: 97 Copynumber: 2.4 Consensus size: 96
37756866 TTAAAAAGAG
*
37756876 GCAAATGAATTACCACAAAGGCATCTAAGTAAAAGAAACATAATTGATGCAATTCAAATGTTCAA
1 GCAAATGAGTTACCACAAAGGCATCTAAGTAAAA-AAACATAATTGATGCAATTCAAATGTTCAA
*
37756941 TACAAGCATCTAAGCATAATACCATAATCAAT
65 CACAAGCATCTAAGCATAATACCATAATCAAT
*
37756973 GCAAATGAGTTACCACAAAGGCATCTAAGTAAAGAAAACATAATTGATGCAGTTCAAATGTTCAA
1 GCAAATGAGTTACCACAAAGGCATCTAAGTAAA-AAAACATAATTGATGCAATTCAAATGTTCAA
37757038 CACAAGCATCTAAGCATAATACCATAATCAAT
65 CACAAGCATCTAAGCATAATACCATAATCAAT
*
37757070 GCAAATGAGTTACCACAAAGG-ATTTAAGTAAAAAAA
1 GCAAATGAGTTACCACAAAGGCATCTAAGTAAAAAAA
37757106 AAACATAAAG
Statistics
Matches: 128, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
95 4 0.03
96 10 0.08
97 113 0.88
98 1 0.01
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.23
Consensus pattern (96 bp):
GCAAATGAGTTACCACAAAGGCATCTAAGTAAAAAAACATAATTGATGCAATTCAAATGTTCAAC
ACAAGCATCTAAGCATAATACCATAATCAAT
Found at i:37757122 original size:26 final size:26
Alignment explanation
Indices: 37757086--37757139 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
37757076 GAGTTACCAC
37757086 AAAGGATTTAAGTAAAAAAAAAACAT
1 AAAGGATTTAAGTAAAAAAAAAACAT
37757112 AAAGGATTTAAGTAAAAAAAAAACAT
1 AAAGGATTTAAGTAAAAAAAAAACAT
37757138 AA
1 AA
37757140 TTGATGCGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.19
Consensus pattern (26 bp):
AAAGGATTTAAGTAAAAAAAAAACAT
Found at i:37757658 original size:22 final size:22
Alignment explanation
Indices: 37757614--37757657 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
37757604 TAGAAGGAGG
37757614 AGAAGCAAGAAACAAGCAAAAA
1 AGAAGCAAGAAACAAGCAAAAA
*
37757636 AGAAGCAAGAAGCAA-CAAAAA
1 AGAAGCAAGAAACAAGCAAAAA
37757657 A
1 A
37757658 AATTTAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.68, C:0.14, G:0.18, T:0.00
Consensus pattern (22 bp):
AGAAGCAAGAAACAAGCAAAAA
Found at i:37758315 original size:28 final size:27
Alignment explanation
Indices: 37758283--37758345 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
37758273 TTTAATATTA
*
37758283 AAATAATACA-AAAATTCATTTATAATTT
1 AAATAATA-ATAAAATTCA-GTATAATTT
* *
37758311 GAATAATAATATAATTCAGTATAATTT
1 AAATAATAATAAAATTCAGTATAATTT
37758338 AAATAATA
1 AAATAATA
37758346 TTACTAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 16 0.53
28 14 0.47
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (27 bp):
AAATAATAATAAAATTCAGTATAATTT
Found at i:37760239 original size:44 final size:44
Alignment explanation
Indices: 37760189--37760503 Score: 160
Period size: 44 Copynumber: 7.2 Consensus size: 44
37760179 CCAGTAATTC
*
37760189 TATCTCCCTGAGCAGCAGTGGAATAGATTAAAGATTTCAGATAT
1 TATCTCCCTGAGCAGCAGTGGAATAGATTGAAGATTTCAGATAT
* * * * * ** ** * *
37760233 TGTCTCCCTAAGCAGTAGTGGGACAGATCAAAGATGGCGGATTT
1 TATCTCCCTGAGCAGCAGTGGAATAGATTGAAGATTTCAGATAT
* ** * * *
37760277 TACCTCCCTGAAGTTGCAGTGGAGTATATTGAAG---CCAG-TAATT
1 TATCTCCCTG-AGCAGCAGTGGAATAGATTGAAGATTTCAGAT-A-T
*
37760320 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATAT
1 -TATCTCCCTGAGCAGCAGTGGAATAGATTGAAGATTTCAGATAT
* * * * * ** ** * *
37760365 TGTCTCCCTAAGCAGTAGTGGGACAGATCAAAGATGGCGGATTT
1 TATCTCCCTGAGCAGCAGTGGAATAGATTGAAGATTTCAGATAT
* ** * * *
37760409 TACCTCCCTGAAGTTGCAGTGGAGTATATTGAAG---CCAG-TAATT
1 TATCTCCCTG-AGCAGCAGTGGAATAGATTGAAGATTTCAGAT-A-T
*
37760452 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATAT
1 -TATCTCCCTGAGCAGCAGTGGAATAGATTGAAGATTTCAGATAT
*
37760497 TGTCTCC
1 TATCTCC
37760504 AGTAGTGGGA
Statistics
Matches: 188, Mismatches: 67, Indels: 32
0.66 0.23 0.11
Matches are distributed among these distances:
41 2 0.01
42 4 0.02
43 38 0.20
44 104 0.55
45 30 0.16
46 8 0.04
47 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAGCAGCAGTGGAATAGATTGAAGATTTCAGATAT
Found at i:37760283 original size:132 final size:132
Alignment explanation
Indices: 37760124--37760980 Score: 1133
Period size: 132 Copynumber: 6.5 Consensus size: 132
37760114 GACAACGAAG
* * *
37760124 CAGATCAAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* *
37760189 TATCTCCCTGAGCAGCAGTGGAATAGATTAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGG
66 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGG
37760254 GA
131 GA
* * *
37760256 CAGATCAAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
37760321 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGG
66 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGG
37760386 GA
131 GA
* * *
37760388 CAGATCAAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
37760453 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCT--C----CAGTAGTGG
66 TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGG
37760512 GA
131 GA
* * *
37760514 CAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* * *
37760579 TA-CTTCCCTGGGCAGCAGTGGAATAGATTGAAAATTACAGATCTTGTCTCCCTAAGCAGTAGTG
66 TATC-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTG
37760643 AGG-
130 -GGA
* * * * * *
37760646 CAGATCAAAGAGGGTGAATGTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* * * *
37760711 TA-CTTCCCTGGGCAGAAGTGGAATAGATGGAAGATTTCAGATCTTTTCTCCCTAAGCAGTAGTG
66 TATC-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTG
*
37760775 GAA
130 GGA
* * ** * *
37760778 CATATTAAAGATGATGGATTTTACCTCCCT-ATGGTTACAATGGAGTAAATTGAAGCCAGTAATT
1 CAGATCAAAGATGGCGGATTTTACCTCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAGTAATT
* * * * * * ** * *
37760842 CTATCTTCCTAGGCAACAGTGGAATAGATTGAAGACTACAGATCTCATCTCCTTAGGCAGTAGTG
65 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTG
*
37760907 GAA
130 GGA
* * * * * *
37760910 TAGATCGAAGATTGCAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCAAGT-ATTC
1 CAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATT-
37760974 CTATCTC
65 CTATCTC
37760981 TTTGAAGTTG
Statistics
Matches: 660, Mismatches: 52, Indels: 26
0.89 0.07 0.04
Matches are distributed among these distances:
125 1 0.00
126 114 0.17
128 1 0.00
130 1 0.00
131 4 0.01
132 535 0.81
133 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
CAGATCAAAGATGGCGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
TATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGG
GA
Found at i:37760843 original size:390 final size:394
Alignment explanation
Indices: 37760124--37760980 Score: 1144
Period size: 390 Copynumber: 2.2 Consensus size: 394
37760114 GACAACGAAG
* * * * *
37760124 CAGATCAAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
*
37760189 TATCTCCCTGAGCAGCAGTGGAATAGATTAAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGG
66 TATCTCCCTGAGCAGCAGTGGAATAGATTAAAGATTACAGATATTGTCTCCCTAAGCAGTAGTGG
* * * * *
37760254 GACAGATCAAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTAAT
131 GACAGATCAAAGAGGGCGAATGTTACCTCCCTGAAGTTACAGTGGAGTACATTGAAGCCAGTAAT
* *
37760319 TCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGT
196 TCTATCTCCCTGGGCAGAAGTGGAATAGATGGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGT
* * * * *
37760384 GGGACAGATCAAAGATGGCGGATTTTACCTCCCTGAAGTTGCAGTGGAGTATATTGAAGCCAGTA
261 GGAACAGATCAAAGATGACGGATTTTACCTCCCTGAAGTTACAATGGAGTAAATTGAAGCCAGTA
* * * * *
37760449 ATTCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATAT-TGT-C-T-CCAGTAGT
326 ATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGACTACAGATATATCTCCTTACCAGTAGT
*
37760510 GGGA
391 GGAA
*
37760514 CAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
1 CAGATCAAAGATGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
* *
37760579 TA-CTTCCCTGGGCAGCAGTGGAATAGATTGAAA-ATTACAGATCTTGTCTCCCTAAGCAGTAGT
66 TATC-TCCCTGAGCAGCAGTGGAATAGATT-AAAGATTACAGATATTGTCTCCCTAAGCAGTAGT
* * **
37760642 GAGG-CAGATCAAAGAGGGTGAATGTTACCTTCCTGTGGTTACAGTGGAGTACATTGAAGCCAGT
129 G-GGACAGATCAAAGAGGGCGAATGTTACCTCCCTGAAGTTACAGTGGAGTACATTGAAGCCAGT
* *
37760706 AATTCTA-CTTCCCTGGGCAGAAGTGGAATAGATGGAAGATTTCAGATCTTTTCTCCCTAAGCAG
193 AATTCTATC-TCCCTGGGCAGAAGTGGAATAGATGGAAGATTTCAGATATTGTCTCCCTAAGCAG
* * * *
37760770 TAGTGGAACATATTAAAGATGATGGATTTTACCTCCCT-ATGGTTACAATGGAGTAAATTGAAGC
257 TAGTGGAACAGATCAAAGATGACGGATTTTACCTCCCTGA-AGTTACAATGGAGTAAATTGAAGC
* * *
37760834 CAGTAATTCTATCTTCCTAGGCAACAGTGGAATAGATTGAAGACTACAGATCTCATCTCCTTAGG
321 CAGTAATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGACTACAGATAT-ATCTCCTTA-C
37760899 CAGTAGTGGAA
384 CAGTAGTGGAA
* * * *
37760910 TAGATCGAAGAT--TGCAGATTTTACCTCCCTGAGGTTACAATGGAGTACATTGAAGCAAGT-AT
1 CAGATCAAAGATGGTG-A-ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
37760972 TCCTATCTC
64 T-CTATCTC
37760981 TTTGAAGTTG
Statistics
Matches: 407, Mismatches: 45, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
389 3 0.01
390 323 0.79
391 5 0.01
392 2 0.00
393 1 0.00
394 3 0.01
395 4 0.01
396 65 0.16
397 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (394 bp):
CAGATCAAAGATGGTGAATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTC
TATCTCCCTGAGCAGCAGTGGAATAGATTAAAGATTACAGATATTGTCTCCCTAAGCAGTAGTGG
GACAGATCAAAGAGGGCGAATGTTACCTCCCTGAAGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTATCTCCCTGGGCAGAAGTGGAATAGATGGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGT
GGAACAGATCAAAGATGACGGATTTTACCTCCCTGAAGTTACAATGGAGTAAATTGAAGCCAGTA
ATTCTATCTCCCTAGGCAACAGTGGAATAGATTGAAGACTACAGATATATCTCCTTACCAGTAGT
GGAA
Found at i:37765058 original size:60 final size:60
Alignment explanation
Indices: 37764994--37765279 Score: 321
Period size: 60 Copynumber: 4.9 Consensus size: 60
37764984 TACCGTACTG
** * *
37764994 CTATTTTTTTTCTGGCAACTTTTTTGCTGCCTCTTCATGATCTCTTTGCCACCCCTGCTA
1 CTATTTTTTTTCTGGCAACTGCTTTGCTGCCTCTTCACGATCTCTTTGCAACCCCTGCTA
* *
37765054 CTATTATTTTTTTCT-GCAACTGCTTTGCTGCCTCTTCACGTATCTC--TGCAACCCTTGCTG
1 CTA-T-TTTTTTTCTGGCAACTGCTTTGCTGCCTCTTCACG-ATCTCTTTGCAACCCCTGCTA
*
37765114 CTA--TTTTTT-TGGCAACTGCTTTGCTGTCTCTTCACG-TCTCTTTGCAACCCCTGCTA
1 CTATTTTTTTTCTGGCAACTGCTTTGCTGCCTCTTCACGATCTCTTTGCAACCCCTGCTA
* *
37765170 CTATTATTTTTTTCT-GCAACTGCTTT-CTTGCCTCTTCACGTATCTC--TGCAACCCTTGCTG
1 CTA-T-TTTTTTTCTGGCAACTGCTTTGC-TGCCTCTTCACG-ATCTCTTTGCAACCCCTGCTA
*
37765230 CTA-TGTTTTT-TGGCAACTGCTTTGCTGCCTCTTCACG-TCTCTTTGCAACC
1 CTATTTTTTTTCTGGCAACTGCTTTGCTGCCTCTTCACGATCTCTTTGCAACC
37765280 TCTACTGATT
Statistics
Matches: 195, Mismatches: 13, Indels: 39
0.79 0.05 0.16
Matches are distributed among these distances:
54 4 0.02
55 5 0.03
56 46 0.24
57 36 0.18
58 1 0.01
59 1 0.01
60 60 0.31
61 24 0.12
62 18 0.09
ACGTcount: A:0.13, C:0.30, G:0.13, T:0.44
Consensus pattern (60 bp):
CTATTTTTTTTCTGGCAACTGCTTTGCTGCCTCTTCACGATCTCTTTGCAACCCCTGCTA
Found at i:37765276 original size:117 final size:116
Alignment explanation
Indices: 37764999--37765279 Score: 474
Period size: 116 Copynumber: 2.4 Consensus size: 116
37764989 TACTGCTATT
** * *
37764999 TTTTTTCTGGCAACTTTTTTGCTGCCTCTTCATGATCTCTTTGCCACCCCTGCTACTATTATTTT
1 TTTTTT-TGGCAACTGCTTTGCTGCCTCTTCACG-TCTCTTTGCAACCCCTGCTACTATTATTTT
37765064 TTTCTGCAACTGCTTTGCTGCCTCTTCACGTATCTCTGCAACCCTTGCTGCTA
64 TTTCTGCAACTGCTTTGCTGCCTCTTCACGTATCTCTGCAACCCTTGCTGCTA
*
37765117 TTTTTTTGGCAACTGCTTTGCTGTCTCTTCACGTCTCTTTGCAACCCCTGCTACTATTATTTTTT
1 TTTTTTTGGCAACTGCTTTGCTGCCTCTTCACGTCTCTTTGCAACCCCTGCTACTATTATTTTTT
37765182 TCTGCAACTGCTTT-CTTGCCTCTTCACGTATCTCTGCAACCCTTGCTGCTA
66 TCTGCAACTGCTTTGC-TGCCTCTTCACGTATCTCTGCAACCCTTGCTGCTA
37765233 TGTTTTTTGGCAACTGCTTTGCTGCCTCTTCACGTCTCTTTGCAACC
1 T-TTTTTTGGCAACTGCTTTGCTGCCTCTTCACGTCTCTTTGCAACC
37765280 TCTACTGATT
Statistics
Matches: 155, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
115 1 0.01
116 81 0.52
117 67 0.43
118 6 0.04
ACGTcount: A:0.12, C:0.30, G:0.14, T:0.44
Consensus pattern (116 bp):
TTTTTTTGGCAACTGCTTTGCTGCCTCTTCACGTCTCTTTGCAACCCCTGCTACTATTATTTTTT
TCTGCAACTGCTTTGCTGCCTCTTCACGTATCTCTGCAACCCTTGCTGCTA
Found at i:37769018 original size:9 final size:9
Alignment explanation
Indices: 37769004--37769028 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37768994 ACTTAAATTT
37769004 TAAATTAAA
1 TAAATTAAA
37769013 TAAATTAAA
1 TAAATTAAA
37769022 TAAATTA
1 TAAATTA
37769029 TTGAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
TAAATTAAA
Found at i:37772394 original size:6 final size:6
Alignment explanation
Indices: 37772385--37772418 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
37772375 ACTATAAGAA
* *
37772385 GGTTGG GGTTAA GGTTAG GGTTAG GGTTAG GGTT
1 GGTTAG GGTTAG GGTTAG GGTTAG GGTTAG GGTT
37772419 GAGGTAGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (6 bp):
GGTTAG
Found at i:37772400 original size:12 final size:12
Alignment explanation
Indices: 37772383--37772423 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
37772373 AAACTATAAG
*
37772383 AAGGTTGGGGTT
1 AAGGTTAGGGTT
37772395 AAGGTTAGGGTT
1 AAGGTTAGGGTT
*
37772407 AGGGTTAGGGTT
1 AAGGTTAGGGTT
*
37772419 GAGGT
1 AAGGT
37772424 AGATGAGGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.49, T:0.32
Consensus pattern (12 bp):
AAGGTTAGGGTT
Found at i:37773032 original size:98 final size:99
Alignment explanation
Indices: 37772861--37773150 Score: 435
Period size: 99 Copynumber: 2.9 Consensus size: 99
37772851 TTAAAAAGAG
*
37772861 GCAAATGAATTACCAC-AAAGGCATCTAAGTAAAAAAAAAAACATAATTGATGCAGTTCAAATGT
1 GCAAATGAGTTACCACAAAAGGCATCTAAGT--AAAAAAAAACATAATTGATGCAGTTCAAATGT
* * *
37772925 TCAATACAAGCATTTAAGCATAATACGATAATCGAT
64 TCAATACAAGCATCTAAGCATAATACCATAATCAAT
*
37772961 GCAAATGAGTTACCACAAAAGGCATCTAAGT-AAAGAAAACATAATTGATGCAGTTCAAATGTTC
1 GCAAATGAGTTACCACAAAAGGCATCTAAGTAAAAAAAAACATAATTGATGCAGTTCAAATGTTC
37773025 AATACAAGCATCTAAGCATAATACCCATAATCAAT
66 AATACAAGCATCTAAGCATAATA-CCATAATCAAT
* * *
37773060 GCAAATGAGTTACCACAAAA-G-ATTTAAGTAAAAAAAAACCATAATTGTTGCAATTCAAATGTT
1 GCAAATGAGTTACCACAAAAGGCATCTAAGTAAAAAAAAA-CATAATTGATGCAGTTCAAATGTT
*
37773123 TAATACAAGCATCTAAGCATAATACCAT
65 CAATACAAGCATCTAAGCATAATACCAT
37773151 GATTGACGGA
Statistics
Matches: 176, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
97 7 0.04
98 66 0.38
99 74 0.42
100 15 0.09
101 14 0.08
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.24
Consensus pattern (99 bp):
GCAAATGAGTTACCACAAAAGGCATCTAAGTAAAAAAAAACATAATTGATGCAGTTCAAATGTTC
AATACAAGCATCTAAGCATAATACCATAATCAAT
Found at i:37773286 original size:4 final size:4
Alignment explanation
Indices: 37773277--37773311 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
37773267 AAGTTTGTGG
37773277 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
37773312 GATAAACAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:37774312 original size:27 final size:29
Alignment explanation
Indices: 37774281--37774342 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 29
37774271 TTTAATATTA
*
37774281 AAATAATACAA-A-AATTCATTATAATTT
1 AAATAATACAATATAATTCAGTATAATTT
*
37774308 GAAT-A-ACAATATAATTCAGTATAATTT
1 AAATAATACAATATAATTCAGTATAATTT
37774335 AAATAATA
1 AAATAATA
37774343 TTACTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
25 4 0.14
26 2 0.07
27 20 0.71
28 1 0.04
29 1 0.04
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (29 bp):
AAATAATACAATATAATTCAGTATAATTT
Found at i:37775435 original size:40 final size:40
Alignment explanation
Indices: 37775380--37775463 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
37775370 TTGAAAGTCT
37775380 ATTTCAAGCAACTCAGAATATATATTTTTCTATTATTTCC
1 ATTTCAAGCAACTCAGAATATATATTTTTCTATTATTTCC
37775420 ATTTCAAGCAACTCAGAATATATATTTTTCTATTATTTCC
1 ATTTCAAGCAACTCAGAATATATATTTTTCTATTATTTCC
37775460 ATTT
1 ATTT
37775464 TAACCTAACC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.32, C:0.17, G:0.05, T:0.46
Consensus pattern (40 bp):
ATTTCAAGCAACTCAGAATATATATTTTTCTATTATTTCC
Found at i:37776394 original size:60 final size:59
Alignment explanation
Indices: 37776297--37776474 Score: 227
Period size: 60 Copynumber: 3.0 Consensus size: 59
37776287 CTCTGCCCTG
* * * *
37776297 CTGCTATTATTTTTTTTTTGGCAACTTCTTT-TCTGCCTCTTCACATCTCTTTGCAACCC
1 CTGCTACTATTTTTTTTCTGGCAACTGCTTTGT-TGCCTCTTCACGTCTCTTTGCAACCC
* *
37776356 CTGCTACTATTATTTTTTCTGGCAACTGCTTTGTTGCCTCTTCACGTATCTCTGCAACCC
1 CTGCTACTATT-TTTTTTCTGGCAACTGCTTTGTTGCCTCTTCACGTCTCTTTGCAACCC
* * * *
37776416 CTGCTGCTA-TTTTTTTC-GACAACTGCTTTGCTCCCTCTTCACGTCTCTTTGCAACCC
1 CTGCTACTATTTTTTTTCTGGCAACTGCTTTGTTGCCTCTTCACGTCTCTTTGCAACCC
37776473 CT
1 CT
37776475 ACTGATTTGC
Statistics
Matches: 105, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
57 37 0.35
58 7 0.07
59 11 0.10
60 49 0.47
61 1 0.01
ACGTcount: A:0.13, C:0.31, G:0.11, T:0.44
Consensus pattern (59 bp):
CTGCTACTATTTTTTTTCTGGCAACTGCTTTGTTGCCTCTTCACGTCTCTTTGCAACCC
Found at i:37780806 original size:31 final size:31
Alignment explanation
Indices: 37780753--37780811 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
37780743 TTAAAAATTA
* * * *
37780753 TCAAATAAGGGCTTAACTTTTTTGAAAGTGT
1 TCAAATAAGGGATAAACCTTTTTAAAAGTGT
37780784 TCAAATAAGGGATAAACCTTTTTAAAAG
1 TCAAATAAGGGATAAACCTTTTTAAAAG
37780812 AACTCAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (31 bp):
TCAAATAAGGGATAAACCTTTTTAAAAGTGT
Found at i:37781787 original size:13 final size:13
Alignment explanation
Indices: 37781717--37781789 Score: 55
Period size: 13 Copynumber: 5.7 Consensus size: 13
37781707 ACAAATAATA
*
37781717 TTAAATAATATAT
1 TTAAATATTATAT
*
37781730 TCTAAATACTATA-
1 T-TAAATATTATAT
*
37781743 TAAAATATTATA-
1 TTAAATATTATAT
37781755 --AAATATGTACTAT
1 TTAAATAT-TA-TAT
37781768 TTAAATATTATAT
1 TTAAATATTATAT
*
37781781 TTTAATATT
1 TTAAATATT
37781790 GTAAAATACT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.12
11 2 0.04
12 11 0.22
13 13 0.26
14 12 0.24
15 6 0.12
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (13 bp):
TTAAATATTATAT
Found at i:37783126 original size:25 final size:23
Alignment explanation
Indices: 37783096--37783152 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
37783086 ATTAGTTAAT
**
37783096 TAGTATTATTAAGGTTTTTTTTTAG
1 TAGTATTATT-A-GTTTTTTAGTAG
*
37783121 TAGTATAATTAGTTTTTTAGTAG
1 TAGTATTATTAGTTTTTTAGTAG
37783144 TAGT-TTATT
1 TAGTATTATT
37783153 TGTGTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
22 4 0.14
23 14 0.50
24 1 0.04
25 9 0.32
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (23 bp):
TAGTATTATTAGTTTTTTAGTAG
Found at i:37785993 original size:18 final size:19
Alignment explanation
Indices: 37785964--37786004 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
37785954 GACAAAAAGG
* *
37785964 TTTTACTTTTTTTATTTTA
1 TTTTACTTTTTTAATGTTA
37785983 TTTTA-TTTTTTAATGTTA
1 TTTTACTTTTTTAATGTTA
37786001 TTTT
1 TTTT
37786005 CTTGTTGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTACTTTTTTAATGTTA
Found at i:37786034 original size:11 final size:11
Alignment explanation
Indices: 37786020--37786060 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
37786010 TGTTTTCTCC
37786020 CTATTTTGCTA
1 CTATTTTGCTA
*
37786031 CTATTTTACTA
1 CTATTTTGCTA
* *
37786042 TTATGTTGCTA
1 CTATTTTGCTA
37786053 CTATTTTG
1 CTATTTTG
37786061 TTGTTATTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:37786159 original size:30 final size:30
Alignment explanation
Indices: 37786097--37786159 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
37786087 ACTTATTTTA
*
37786097 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAACGCAT
* *
37786127 TTGTTAATTTTGTTATTATTTTAGACGTAT
1 TTGTTAATTTTGTTATTATTTTAAACGCAT
37786157 TTG
1 TTG
37786160 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.03, G:0.14, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAACGCAT
Found at i:37786945 original size:17 final size:17
Alignment explanation
Indices: 37786925--37786958 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37786915 TACCTATTTC
*
37786925 ATTATGTATTATATTAT
1 ATTATATATTATATTAT
*
37786942 ATTATATTTTATATTAT
1 ATTATATATTATATTAT
37786959 TTGGTTAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATTATATATTATATTAT
Found at i:37791869 original size:21 final size:21
Alignment explanation
Indices: 37791844--37791917 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
37791834 CAACACATAA
*
37791844 GTGCCTGAAATGACACGCGAG
1 GTGCCTGAAATGACACACGAG
* *
37791865 ATGCCTGATATGACACACGAG
1 GTGCCTGAAATGACACACGAG
* *
37791886 GTGCCTGATACGACACACGAG
1 GTGCCTGAAATGACACACGAG
*
37791907 GTGCCTAAAAT
1 GTGCCTGAAAT
37791918 ATGACACATA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (21 bp):
GTGCCTGAAATGACACACGAG
Found at i:37792643 original size:5 final size:5
Alignment explanation
Indices: 37792633--37792660 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
37792623 AATTCTCCCT
37792633 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTT
37792661 CCCCTTTCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTC
Found at i:37792668 original size:16 final size:16
Alignment explanation
Indices: 37792634--37792677 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
37792624 ATTCTCCCTT
* *
37792634 TTTCTTTTCTTT-TCT
1 TTTCTTTTCTTTCCCC
37792649 TTTCTTTTCTTTCCCC
1 TTTCTTTTCTTTCCCC
*
37792665 TTTCCTTTCTTTC
1 TTTCTTTTCTTTC
37792678 TTCTTCGCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTCTTTTCTTTCCCC
Found at i:37795401 original size:18 final size:18
Alignment explanation
Indices: 37795364--37795402 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
37795354 AAAATTATTA
* **
37795364 AAAAATAATAAAATGTAT
1 AAAAATAAAAAAATACAT
37795382 AAAAATAAAAAAATACAT
1 AAAAATAAAAAAATACAT
37795400 AAA
1 AAA
37795403 TTAAAACTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (18 bp):
AAAAATAAAAAAATACAT
Found at i:37795583 original size:27 final size:26
Alignment explanation
Indices: 37795552--37795615 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 26
37795542 TTTATCAAGG
*
37795552 TTATTAGTTTATCGATAAATGAATATT
1 TTATTAATTTATCGATAAATGAATA-T
* *
37795579 TTATTAATTAATCGATAAATTAATAT
1 TTATTAATTTATCGATAAATGAATAT
37795605 TTATTAATTTA
1 TTATTAATTTA
37795616 GAGAATATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 11 0.33
27 22 0.67
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (26 bp):
TTATTAATTTATCGATAAATGAATAT
Found at i:37800508 original size:24 final size:24
Alignment explanation
Indices: 37800464--37800510 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
37800454 ATTAAAATGG
37800464 ATTGATTTAGTATCTGATGAATTT
1 ATTGATTTAGTATCTGATGAATTT
37800488 ATTGAATTTA-TAT-TGATTGAATT
1 ATTG-ATTTAGTATCTGA-TGAATT
37800511 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGATTTAGTATCTGATGAATTT
Found at i:37804216 original size:29 final size:30
Alignment explanation
Indices: 37804174--37804248 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 30
37804164 AAAATGGAGT
*
37804174 TTTAGGTTCCTTAAAAGTTAG-AAAAAAAA
1 TTTAGGTCCCTTAAAAGTTAGTAAAAAAAA
*
37804203 TTTAGGTCCCTTAAAAGTTGGTAAAAAAAA
1 TTTAGGTCCCTTAAAAGTTAGTAAAAAAAA
* *
37804233 TTT-GGGCCTTTAAAAG
1 TTTAGGTCCCTTAAAAG
37804249 CTAAATTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 30 0.73
30 11 0.27
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.32
Consensus pattern (30 bp):
TTTAGGTCCCTTAAAAGTTAGTAAAAAAAA
Found at i:37807514 original size:22 final size:22
Alignment explanation
Indices: 37807482--37807523 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
37807472 AATAATTCAA
37807482 AAAATTATAAAAATATAAAATT
1 AAAATTATAAAAATATAAAATT
*
37807504 AAAATTTTAAAAATATAAAA
1 AAAATTATAAAAATATAAAA
37807524 AGTTCATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATTATAAAAATATAAAATT
Found at i:37807767 original size:22 final size:22
Alignment explanation
Indices: 37807708--37807761 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
37807698 TGTTAATTTA
* * *
37807708 TTTTATTTTAATTTGGGTTTTG
1 TTTTAATTTAAGTTGTGTTTTG
*
37807730 TTTTTATTTAAGTTGTGTTTTG
1 TTTTAATTTAAGTTGTGTTTTG
37807752 TTTTAATTTA
1 TTTTAATTTA
37807762 TATTGTAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.17, C:0.00, G:0.15, T:0.69
Consensus pattern (22 bp):
TTTTAATTTAAGTTGTGTTTTG
Found at i:37813430 original size:20 final size:20
Alignment explanation
Indices: 37813405--37813445 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
37813395 ATTTCTAAGC
*
37813405 TTCAAAATCTACAATAAACA
1 TTCAAAAACTACAATAAACA
* *
37813425 TTCAAAAACTTCAATTAACA
1 TTCAAAAACTACAATAAACA
37813445 T
1 T
37813446 GAATGAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (20 bp):
TTCAAAAACTACAATAAACA
Found at i:37813702 original size:19 final size:18
Alignment explanation
Indices: 37813678--37813713 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
37813668 TAATTAAAAA
*
37813678 TTAATTAATCATAGTTTAT
1 TTAATTAAACAT-GTTTAT
37813697 TTAATTAAACATGTTTA
1 TTAATTAAACATGTTTA
37813714 ACTAATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
TTAATTAAACATGTTTAT
Found at i:37817601 original size:21 final size:22
Alignment explanation
Indices: 37817552--37817602 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
37817542 ATTAGAAAAA
*
37817552 TGATTTAAGATGAAATATGAAC
1 TGATTTAAGATGAAATATCAAC
* * *
37817574 CGATTTAAGATG-AATTTCAAT
1 TGATTTAAGATGAAATATCAAC
37817595 TGATTTAA
1 TGATTTAA
37817603 ATGTGTTGAC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.37
Consensus pattern (22 bp):
TGATTTAAGATGAAATATCAAC
Found at i:37817822 original size:18 final size:19
Alignment explanation
Indices: 37817787--37817822 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
37817777 TTAAAAGTTA
37817787 TATAAATATAAAAAAATCT
1 TATAAATATAAAAAAATCT
*
37817806 TATAAATA-AACAAAATC
1 TATAAATATAAAAAAATC
37817823 AGAATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (19 bp):
TATAAATATAAAAAAATCT
Found at i:37823775 original size:12 final size:12
Alignment explanation
Indices: 37823758--37823783 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37823748 TAGATCAAGA
37823758 AACGAACAAACC
1 AACGAACAAACC
37823770 AACGAACAAACC
1 AACGAACAAACC
37823782 AA
1 AA
37823784 ACTTGAATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.31, G:0.08, T:0.00
Consensus pattern (12 bp):
AACGAACAAACC
Found at i:37826805 original size:27 final size:27
Alignment explanation
Indices: 37826767--37826860 Score: 136
Period size: 27 Copynumber: 3.5 Consensus size: 27
37826757 GGAGGGTTTG
* *
37826767 TGATTGGCGGCACCAAAGGTGCC-TAAC
1 TGATTGGCGGCACCGATGGTGCCAT-AC
37826794 TGATTGGCGGCACCGATGGTGCCATAC
1 TGATTGGCGGCACCGATGGTGCCATAC
*
37826821 TGGTTGGCGGCACCGATGGTGCCATAC
1 TGATTGGCGGCACCGATGGTGCCATAC
*
37826848 TGATTGGTGGCAC
1 TGATTGGCGGCAC
37826861 TACTCGTGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 60 0.98
28 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.34, T:0.22
Consensus pattern (27 bp):
TGATTGGCGGCACCGATGGTGCCATAC
Found at i:37827975 original size:18 final size:18
Alignment explanation
Indices: 37827952--37827989 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37827942 GGTTAGTGAT
37827952 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGGTGGC
*
37827970 GAAGAAGAATGTGGTGGC
1 GAAGAAGAAGGTGGTGGC
37827988 GA
1 GA
37827990 TCATTGGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.05, G:0.47, T:0.13
Consensus pattern (18 bp):
GAAGAAGAAGGTGGTGGC
Found at i:37832780 original size:162 final size:161
Alignment explanation
Indices: 37832578--37833100 Score: 538
Period size: 162 Copynumber: 3.3 Consensus size: 161
37832568 ATAATTTCTA
* * *
37832578 ATTTTATAATTTTACATTATTTCAGTGCATAATATTTGAAATTTATTAATTTAGTATGTTTTTTA
1 ATTTTATTATTTTACATTATTTCAGTGCATATTGTTTGAAATTTATTAATTTAGTATGTTTTTTA
*
37832643 AATTAATTTGTTGTAAGAAAAAAACTCTTATCCTTGCCCTTTGCTCGTATTATTTTCCCGATTTT
66 AATTAATTTGATGTAAGAAAAAAACTCTTATCCTTGCCCTTTGCTCGTATTATTTTCCCGATTTT
37832708 TATTACTTTCAATAAAAATATTTTATTTTCGT
131 TATTACTTT-AATAAAAATATTTTATTTTCGT
* * * * * *
37832740 ATTTTATTATTTTATATTATTTTAGTGCATTTTGTTTGAAATATTTGTATTAA-TTATTTTTGAA
1 ATTTTATTATTTTACATTATTTCAGTGCATATTGTTTG-AA-A-TT-TATTAATTTA-GTATG-T
* * * ** * *
37832804 TTTTTAAA--AA----ATGT-AGTAATACACTCTTA--CTTCGGCTATTTGTTCGTATTTTTTTA
60 TTTTTAAATTAATTTGATGTAAGAAAAAAACTCTTATCCTT--GCCCTTTGCTCGTATTATTTT-
* * ** *
37832860 TCCG-TATTATATTA-TTT--TAAAAATATCGTAATTTC-T
122 CCCGAT-TTTTATTACTTTAATAAAAATATTTTATTTTCGT
* *
37832896 AATTTTATCATTTTACATTATTTCAGTGCATAATT-TTTGAAATTTATTAATTTAGTGTGTTTTT
1 -ATTTTATTATTTTACATTATTTCAGTGCAT-ATTGTTTGAAATTTATTAATTTAGTATGTTTTT
* * *
37832960 TAAATTAATTTGGTGTAAGAAAAAAACCCTTATCCCTGCCCTTTGCTCGTATTATTTTCCCGATT
64 TAAATTAATTTGATGTAAGAAAAAAACTCTTATCCTTGCCCTTTGCTCGTATTATTTTCCCGATT
37833025 TTTATTACTTTTAATAAAAATATTTTATTTTCGT
129 TTTATTAC-TTTAATAAAAATATTTTATTTTCGT
* * *
37833059 ATTTTATTATTTTATATTATTTCAGTACATTTTGTTTGAAAT
1 ATTTTATTATTTTACATTATTTCAGTGCATATTGTTTGAAAT
37833101 ATTTGTATTA
Statistics
Matches: 284, Mismatches: 48, Indels: 58
0.73 0.12 0.15
Matches are distributed among these distances:
152 8 0.03
153 9 0.03
154 7 0.02
155 1 0.00
156 3 0.01
157 46 0.16
158 18 0.06
159 29 0.10
160 36 0.13
161 17 0.06
162 82 0.29
163 3 0.01
164 1 0.00
165 7 0.02
166 9 0.03
167 8 0.03
ACGTcount: A:0.29, C:0.10, G:0.09, T:0.52
Consensus pattern (161 bp):
ATTTTATTATTTTACATTATTTCAGTGCATATTGTTTGAAATTTATTAATTTAGTATGTTTTTTA
AATTAATTTGATGTAAGAAAAAAACTCTTATCCTTGCCCTTTGCTCGTATTATTTTCCCGATTTT
TATTACTTTAATAAAAATATTTTATTTTCGT
Found at i:37833077 original size:319 final size:321
Alignment explanation
Indices: 37832488--37833117 Score: 1129
Period size: 319 Copynumber: 2.0 Consensus size: 321
37832478 GCAAGTTGAA
37832488 AAAAAAAGTTAGTAATACACTCTTACTTCGACTATTTGTTCGTATTTTTTTATCCGCATTATATT
1 AAAAAAAGTTAGTAATACACTCTTACTTCGACTATTTGTTCGTATTTTTTTATCCGCATTATATT
37832553 ATTTTAAAAAATATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATAATATTTGAA
66 ATTTTAAAAAATATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATAATATTTGAA
* * *
37832618 ATTTATTAATTTAGTATGTTTTTTAAATTAATTTGTTGTAAGAAAAAAACTCTTATCCTTGCCCT
131 ATTTATTAATTTAGTATGTTTTTTAAATTAATTTGGTGTAAGAAAAAAACCCTTATCCCTGCCCT
37832683 TTGCTCGTATTATTTTCCCGATTTTTATTACTTTCAATAAAAATATTTTATTTTCGTATTTTATT
196 TTGCTCGTATTATTTTCCCGATTTTTATTACTTTCAATAAAAATATTTTATTTTCGTATTTTATT
* *
37832748 ATTTTATATTATTTTAGTGCATTTTGTTTGAAATATTTGTATTAATTATTTTTGAATTTTT
261 ATTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTTTTGAATTTTT
* * *
37832809 AAAAAATG-TAGTAATACACTCTTACTTCGGCTATTTGTTCGTATTTTTTTATCCGTATTATATT
1 AAAAAAAGTTAGTAATACACTCTTACTTCGACTATTTGTTCGTATTTTTTTATCCGCATTATATT
* * *
37832873 ATTTT-AAAAATATCGTAATTTCTAATTTTATCATTTTACATTATTTCAGTGCATAATTTTTGAA
66 ATTTTAAAAAATATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATAATATTTGAA
*
37832937 ATTTATTAATTTAGTGTGTTTTTTAAATTAATTTGGTGTAAGAAAAAAACCCTTATCCCTGCCCT
131 ATTTATTAATTTAGTATGTTTTTTAAATTAATTTGGTGTAAGAAAAAAACCCTTATCCCTGCCCT
*
37833002 TTGCTCGTATTATTTTCCCGATTTTTATTACTTTTAATAAAAATATTTTATTTTCGTATTTTATT
196 TTGCTCGTATTATTTTCCCGATTTTTATTACTTTCAATAAAAATATTTTATTTTCGTATTTTATT
37833067 ATTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTT
261 ATTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTT
37833118 CTGACTTCGG
Statistics
Matches: 296, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
319 230 0.78
320 59 0.20
321 7 0.02
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.51
Consensus pattern (321 bp):
AAAAAAAGTTAGTAATACACTCTTACTTCGACTATTTGTTCGTATTTTTTTATCCGCATTATATT
ATTTTAAAAAATATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATAATATTTGAA
ATTTATTAATTTAGTATGTTTTTTAAATTAATTTGGTGTAAGAAAAAAACCCTTATCCCTGCCCT
TTGCTCGTATTATTTTCCCGATTTTTATTACTTTCAATAAAAATATTTTATTTTCGTATTTTATT
ATTTTATATTATTTCAGTACATTTTGTTTGAAATATTTGTATTAATTATTTTTGAATTTTT
Found at i:37833656 original size:27 final size:27
Alignment explanation
Indices: 37833614--37833681 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
37833604 TTATAAGGTT
* *
37833614 GGTGCCGCTAACCAG-TATGGCACCGTC
1 GGTGCCGCCAATCAGTTA-GGCACCGTC
* *
37833641 GGTGCCGCCAATCAGTTAGGCACCTTT
1 GGTGCCGCCAATCAGTTAGGCACCGTC
37833668 GGTGCCGCCAATCA
1 GGTGCCGCCAATCA
37833682 CAAACCCTCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 34 0.94
28 2 0.06
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (27 bp):
GGTGCCGCCAATCAGTTAGGCACCGTC
Found at i:37842977 original size:28 final size:29
Alignment explanation
Indices: 37842946--37843018 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
37842936 AAATACGTAC
* * * *
37842946 GTATCTATGTCTATATAGATTA-TAAAAT
1 GTATGTATGTATATATAAATTACAAAAAT
37842974 GTATGTATGTATATATAAATTACAAAAAT
1 GTATGTATGTATATATAAATTACAAAAAT
37843003 GTATGTATGTATATAT
1 GTATGTATGTATATAT
37843019 GTAATTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 19 0.47
29 21 0.52
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.42
Consensus pattern (29 bp):
GTATGTATGTATATATAAATTACAAAAAT
Found at i:37843011 original size:29 final size:28
Alignment explanation
Indices: 37842946--37843027 Score: 101
Period size: 29 Copynumber: 2.9 Consensus size: 28
37842936 AAATACGTAC
* * * *
37842946 GTATCTATGTCTATATAGATTATAAAAT
1 GTATGTATGTATATATAAATTAAAAAAT
37842974 GTATGTATGTATATATAAATTACAAAAAT
1 GTATGTATGTATATATAAATTA-AAAAAT
*
37843003 GTATGTATGTATATATGTAATTAAA
1 GTATGTATGTATATAT-AAATTAAA
37843028 TTTAAAATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
28 19 0.40
29 23 0.49
30 5 0.11
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.41
Consensus pattern (28 bp):
GTATGTATGTATATATAAATTAAAAAAT
Found at i:37848035 original size:43 final size:43
Alignment explanation
Indices: 37847956--37848038 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
37847946 TCATATTTCA
* * * *
37847956 TTTCTCATCTCATAATCATTTTTCGTATTTGTCATTTCAATAT
1 TTTCTCATCTCATAATCAATTCTCATATTTGCCATTTCAATAT
* *
37847999 TTTCTCATCTCATATTCAATTCTCATCTTTGCCATTTCAA
1 TTTCTCATCTCATAATCAATTCTCATATTTGCCATTTCAA
37848039 AATCAATCAC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.23, C:0.23, G:0.04, T:0.51
Consensus pattern (43 bp):
TTTCTCATCTCATAATCAATTCTCATATTTGCCATTTCAATAT
Found at i:37857289 original size:3 final size:3
Alignment explanation
Indices: 37857281--37857320 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
37857271 TTGATGACAG
37857281 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
37857321 TGATAGTTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:37857737 original size:31 final size:31
Alignment explanation
Indices: 37857689--37857753 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
37857679 CTTGATATAT
37857689 TTTGGTAACAATGATAATGATAACTTTTTAA
1 TTTGGTAACAATGATAATGATAACTTTTTAA
* *
37857720 TTTGTTAACAATTATAATGATAACTTTTTAA
1 TTTGGTAACAATGATAATGATAACTTTTTAA
37857751 TTT
1 TTT
37857754 ATTATTTGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.48
Consensus pattern (31 bp):
TTTGGTAACAATGATAATGATAACTTTTTAA
Found at i:37860706 original size:12 final size:12
Alignment explanation
Indices: 37860689--37860716 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
37860679 ATAGAAGGAA
37860689 TAAACAGATCTT
1 TAAACAGATCTT
37860701 TAAACAGATCTT
1 TAAACAGATCTT
37860713 TAAA
1 TAAA
37860717 TATGTCCAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.32
Consensus pattern (12 bp):
TAAACAGATCTT
Found at i:37861628 original size:13 final size:13
Alignment explanation
Indices: 37861612--37861636 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37861602 ATCACACTTT
37861612 TCAAAAATATTTC
1 TCAAAAATATTTC
37861625 TCAAAAATATTT
1 TCAAAAATATTT
37861637 TTCCACAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
TCAAAAATATTTC
Found at i:37896612 original size:25 final size:26
Alignment explanation
Indices: 37896567--37896624 Score: 84
Period size: 24 Copynumber: 2.3 Consensus size: 26
37896557 TATTTAAGTT
*
37896567 TATATATTGCAATAAAAAT-AATT-A
1 TATATATTGAAATAAAAATAAATTGA
37896591 TATATATTGAATATAAAAATAAATTGA
1 TATATATTGAA-ATAAAAATAAATTGA
37896618 TATATAT
1 TATATAT
37896625 ATTTTTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 10 0.33
25 8 0.27
26 4 0.13
27 8 0.27
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (26 bp):
TATATATTGAAATAAAAATAAATTGA
Found at i:37899767 original size:34 final size:35
Alignment explanation
Indices: 37899729--37899795 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
37899719 CAGTAAAATA
*
37899729 TTTTCCGTAAAATAATTT-TTGAAAAATATTTTAC
1 TTTTCCGTAAAATAATTTACTGAAAAATATTTTAC
*
37899763 TTTTCTGTAAAATAATTTACTGAAAAATATTTT
1 TTTTCCGTAAAATAATTTACTGAAAAATATTTT
37899796 CTGATGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACTGAAAAATATTTTAC
Found at i:37899799 original size:14 final size:15
Alignment explanation
Indices: 37899723--37899799 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
37899713 GATTGCCAGT
* *
37899723 AAAAT-ATTTTCCGT
1 AAAATAATTTTCTGA
37899737 AAAATAATTTT-TGA
1 AAAATAATTTTCTGA
*
37899751 AAAATATTTTACTTTTCTGT
1 AAAATA----A-TTTTCTGA
*
37899771 AAAATAATTTACTGA
1 AAAATAATTTTCTGA
37899786 AAAAT-ATTTTCTGA
1 AAAATAATTTTCTGA
37899800 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 20 0.40
15 16 0.32
16 1 0.02
18 1 0.02
19 4 0.08
20 8 0.16
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (15 bp):
AAAATAATTTTCTGA
Found at i:37903342 original size:237 final size:237
Alignment explanation
Indices: 37902927--37903402 Score: 952
Period size: 237 Copynumber: 2.0 Consensus size: 237
37902917 GAGATAAGTG
37902927 CAAGGGAACTAACTTTGACAAGAGGTGGTCCAGCTAGAAAAATGGTACCATTTCCTTTAACCATC
1 CAAGGGAACTAACTTTGACAAGAGGTGGTCCAGCTAGAAAAATGGTACCATTTCCTTTAACCATC
37902992 ACACTTTCATCAGCCATGGCAGGAATATAGGCACCCCCAGCAGTGCAAGAGCCTAATACCAATGC
66 ACACTTTCATCAGCCATGGCAGGAATATAGGCACCCCCAGCAGTGCAAGAGCCTAATACCAATGC
37903057 AATTTGAGGAATTCCTTGAGCAGACAAGGTAGCTTGATTATAAAAAATTCTACCAAAATTTTCCT
131 AATTTGAGGAATTCCTTGAGCAGACAAGGTAGCTTGATTATAAAAAATTCTACCAAAATTTTCCT
37903122 TGTCTGGAAAAACCTCAGCTTGCTTTGGAAGAAAAGCACCCC
196 TGTCTGGAAAAACCTCAGCTTGCTTTGGAAGAAAAGCACCCC
37903164 CAAGGGAACTAACTTTGACAAGAGGTGGTCCAGCTAGAAAAATGGTACCATTTCCTTTAACCATC
1 CAAGGGAACTAACTTTGACAAGAGGTGGTCCAGCTAGAAAAATGGTACCATTTCCTTTAACCATC
37903229 ACACTTTCATCAGCCATGGCAGGAATATAGGCACCCCCAGCAGTGCAAGAGCCTAATACCAATGC
66 ACACTTTCATCAGCCATGGCAGGAATATAGGCACCCCCAGCAGTGCAAGAGCCTAATACCAATGC
37903294 AATTTGAGGAATTCCTTGAGCAGACAAGGTAGCTTGATTATAAAAAATTCTACCAAAATTTTCCT
131 AATTTGAGGAATTCCTTGAGCAGACAAGGTAGCTTGATTATAAAAAATTCTACCAAAATTTTCCT
37903359 TGTCTGGAAAAACCTCAGCTTGCTTTGGAAGAAAAGCACCCC
196 TGTCTGGAAAAACCTCAGCTTGCTTTGGAAGAAAAGCACCCC
37903401 CA
1 CA
37903403 CTATCAACTA
Statistics
Matches: 239, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
237 239 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (237 bp):
CAAGGGAACTAACTTTGACAAGAGGTGGTCCAGCTAGAAAAATGGTACCATTTCCTTTAACCATC
ACACTTTCATCAGCCATGGCAGGAATATAGGCACCCCCAGCAGTGCAAGAGCCTAATACCAATGC
AATTTGAGGAATTCCTTGAGCAGACAAGGTAGCTTGATTATAAAAAATTCTACCAAAATTTTCCT
TGTCTGGAAAAACCTCAGCTTGCTTTGGAAGAAAAGCACCCC
Found at i:37906936 original size:21 final size:20
Alignment explanation
Indices: 37906894--37906932 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37906884 TTTTGTCTAT
37906894 AAACATTTACAAGTCATTTA
1 AAACATTTACAAGTCATTTA
*
37906914 AAACACTTTAGAA-TCATTT
1 AAACA-TTTACAAGTCATTT
37906933 TAAATTGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (20 bp):
AAACATTTACAAGTCATTTA
Found at i:37910537 original size:20 final size:20
Alignment explanation
Indices: 37910483--37910539 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
37910473 TAGGGGACCA
*
37910483 TTAACTTAAGTAAAATAAGGT
1 TTAA-TTAAGTAAATTAAGGT
*
37910504 TTAATTAATTAAATTAAGG-
1 TTAATTAAGTAAATTAAGGT
37910523 TTAATTAAGCTAAATTA
1 TTAATTAAG-TAAATTA
37910540 TAATTTAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 8 0.25
20 20 0.62
21 4 0.12
ACGTcount: A:0.47, C:0.04, G:0.11, T:0.39
Consensus pattern (20 bp):
TTAATTAAGTAAATTAAGGT
Found at i:37911617 original size:20 final size:19
Alignment explanation
Indices: 37911588--37911643 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
37911578 AGATTATGTT
*
37911588 CTAGTATGCACTTCGTGTG
1 CTAGTATGCACTTTGTGTG
*
37911607 CTAGATATGCA-TTTATGTG
1 CTAG-TATGCACTTTGTGTG
*
37911626 CCAGTATGCACTTTGTGT
1 CTAGTATGCACTTTGTGT
37911644 ACCAGGTATG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 6 0.19
19 19 0.61
20 6 0.19
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (19 bp):
CTAGTATGCACTTTGTGTG
Found at i:37911625 original size:19 final size:19
Alignment explanation
Indices: 37911581--37911639 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
37911571 GAGTATGAGA
*
37911581 TTATGTTCTAGTATGCACT
1 TTATGTGCTAGTATGCACT
**
37911600 TCGTGTGCTAGATATGCA-T
1 TTATGTGCTAG-TATGCACT
*
37911619 TTATGTGCCAGTATGCACT
1 TTATGTGCTAGTATGCACT
37911638 TT
1 TT
37911640 GTGTACCAGG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
18 6 0.19
19 20 0.62
20 6 0.19
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.42
Consensus pattern (19 bp):
TTATGTGCTAGTATGCACT
Found at i:37913568 original size:20 final size:20
Alignment explanation
Indices: 37913543--37913582 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37913533 CGTAAAATGA
*
37913543 TTTCTGAAAAATGTTTTACT
1 TTTCTGAAAAATGATTTACT
*
37913563 TTTCTGTAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
37913583 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:37914330 original size:21 final size:21
Alignment explanation
Indices: 37914291--37914331 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37914281 CTAATTAATT
37914291 TAAAATTTTATGATGTAAAAA
1 TAAAATTTTATGATGTAAAAA
*
37914312 TAAATATTTTAT-ATTTAAAA
1 TAAA-ATTTTATGATGTAAAA
37914332 TAGTGGAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (21 bp):
TAAAATTTTATGATGTAAAAA
Found at i:37915236 original size:19 final size:18
Alignment explanation
Indices: 37915212--37915264 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
37915202 GAAAAACAAG
37915212 TAAAAAAAACCTAAAAAAA
1 TAAAAAAAACC-AAAAAAA
* *
37915231 TAAAAACAACCACAAAAA
1 TAAAAAAAACCAAAAAAA
**
37915249 TAACTAAAA-CAAAAAA
1 TAAAAAAAACCAAAAAA
37915265 CTAAGCAGTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
17 6 0.21
18 12 0.43
19 10 0.36
ACGTcount: A:0.75, C:0.15, G:0.00, T:0.09
Consensus pattern (18 bp):
TAAAAAAAACCAAAAAAA
Found at i:37915247 original size:18 final size:19
Alignment explanation
Indices: 37915212--37915251 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
37915202 GAAAAACAAG
37915212 TAAAAAAAACCTAAAAAAA
1 TAAAAAAAACCTAAAAAAA
* *
37915231 TAAAAACAACC-ACAAAAA
1 TAAAAAAAACCTAAAAAAA
37915249 TAA
1 TAA
37915252 CTAAAACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.75, C:0.15, G:0.00, T:0.10
Consensus pattern (19 bp):
TAAAAAAAACCTAAAAAAA
Found at i:37920006 original size:9 final size:9
Alignment explanation
Indices: 37919992--37920031 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
37919982 GTAGTGATTC
*
37919992 AATTCGGTA
1 AATTCGGTT
37920001 AATTCGAG-T
1 AATTCG-GTT
37920010 AATTCGGTT
1 AATTCGGTT
37920019 AATTCGGTT
1 AATTCGGTT
37920028 AATT
1 AATT
37920032 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 1 0.04
9 26 0.93
10 1 0.04
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:37942339 original size:21 final size:21
Alignment explanation
Indices: 37942302--37942342 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37942292 NNNNTGCTGC
*
37942302 TGCTGCTGTGGTGGTTGTTGT
1 TGCTGCTGTGCTGGTTGTTGT
37942323 TGCTGCTGCTGCT-GTTGTTG
1 TGCTGCTG-TGCTGGTTGTTG
37942343 AGGTTGTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.00, C:0.15, G:0.39, T:0.46
Consensus pattern (21 bp):
TGCTGCTGTGCTGGTTGTTGT
Found at i:37942348 original size:27 final size:27
Alignment explanation
Indices: 37942296--37942349 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
37942286 NNNNNNNNNN
**
37942296 TGCTGCTGCTGCTGTGGTGGTTGTTGT
1 TGCTGCTGCTGCTGTGGTGGAGGTTGT
* *
37942323 TGCTGCTGCTGCTGTTGTTGAGGTTGT
1 TGCTGCTGCTGCTGTGGTGGAGGTTGT
37942350 GAGGATTTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.02, C:0.15, G:0.39, T:0.44
Consensus pattern (27 bp):
TGCTGCTGCTGCTGTGGTGGAGGTTGT
Found at i:37944548 original size:11 final size:11
Alignment explanation
Indices: 37944525--37944559 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
37944515 CAGCTCGTCA
37944525 ATATTATTTTTT
1 ATATTA-TTTTT
37944537 ATATTATTTTT
1 ATATTATTTTT
*
37944548 ATATAATTTTT
1 ATATTATTTTT
37944559 A
1 A
37944560 AATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
ATATTATTTTT
Found at i:37944552 original size:13 final size:13
Alignment explanation
Indices: 37944525--37944564 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
37944515 CAGCTCGTCA
37944525 ATATTATTTTT-T
1 ATATTATTTTTAT
37944537 ATATTATTTTTAT
1 ATATTATTTTTAT
*
37944550 ATA--ATTTTTAA
1 ATATTATTTTTAT
37944561 ATAT
1 ATAT
37944565 ATATAATACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 10 0.40
12 11 0.44
13 4 0.16
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATATTATTTTTAT
Found at i:37944710 original size:30 final size:30
Alignment explanation
Indices: 37944676--37944738 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
37944666 ACTTAACAAG
*
37944676 CAAATACGTCTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
37944706 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
37944736 CAA
1 CAA
37944739 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Done.