Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 140 of 313
Found at i:45034412 original size:22 final size:22
Alignment explanation
Indices: 45034384--45034551 Score: 76
Period size: 22 Copynumber: 7.9 Consensus size: 22
45034374 AATTTTATGT
*
45034384 TATTATACATAACTTACATTAA
1 TATTATACATAAATTACATTAA
45034406 TATTATACATAAATTACA-T-A
1 TATTATACATAAATTACATTAA
* *
45034426 -ACT-TA-ATTAATTA-ATATACA
1 TATTATACATAAATTACAT-TA-A
* *
45034446 TAAGT-TACATAACTTACATTAA
1 T-ATTATACATAAATTACATTAA
*
45034468 TATGATACATAAATTACA-TAA
1 TATTATACATAAATTACATTAA
*
45034489 CTTAGTTA-A-TTAATATT--A-TACA
1 --TA-TTATACATAA-ATTACATTA-A
*
45034511 TATGT-TACATAACTTACATTAA
1 TAT-TATACATAAATTACATTAA
*
45034533 TATGATACATAAATTACAT
1 TATTATACATAAATTACAT
45034552 AACTTAGTTA
Statistics
Matches: 110, Mismatches: 15, Indels: 42
0.66 0.09 0.25
Matches are distributed among these distances:
16 1 0.01
17 7 0.06
18 3 0.03
19 3 0.03
20 8 0.07
21 11 0.10
22 57 0.52
23 16 0.15
24 4 0.04
ACGTcount: A:0.46, C:0.11, G:0.03, T:0.39
Consensus pattern (22 bp):
TATTATACATAAATTACATTAA
Found at i:45034537 original size:65 final size:65
Alignment explanation
Indices: 45034389--45034591 Score: 335
Period size: 65 Copynumber: 3.2 Consensus size: 65
45034379 TATGTTATTA
* *
45034389 TACATAACTTACATTAATATTATACATAAATTACATAACTTAATTAATT-A-A-TATACATAAGT
1 TACATAACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAAGT
*
45034451 TACATAACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATATGT
1 TACATAACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAAGT
*
45034516 TACATAACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAACT
1 TACATAACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAAGT
45034581 TAC--AACTTACA
1 TACATAACTTACA
45034592 ACTTACATAA
Statistics
Matches: 133, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
62 47 0.35
63 9 0.07
64 1 0.01
65 76 0.57
ACGTcount: A:0.46, C:0.12, G:0.03, T:0.38
Consensus pattern (65 bp):
TACATAACTTACATTAATATGATACATAAATTACATAACTTAGTTAATTAATATTATACATAAGT
Found at i:45034603 original size:9 final size:9
Alignment explanation
Indices: 45034411--45035038 Score: 125
Period size: 9 Copynumber: 72.3 Consensus size: 9
45034401 ATTAATATTA
*
45034411 TACATAAAT
1 TACATAACT
45034420 TACATAACT
1 TACATAACT
45034429 TA-ATTAA-T
1 TACA-TAACT
45034437 TA-AT-A--
1 TACATAACT
*
45034442 TACATAAGT
1 TACATAACT
45034451 TACATAACT
1 TACATAACT
*
45034460 TACATTAATAT
1 TACA-TAA-CT
*
45034471 GATACATAAAT
1 --TACATAACT
45034482 TACATAACT
1 TACATAACT
**
45034491 TAGTTAA-T
1 TACATAACT
*
45034499 TA-AT-ATT
1 TACATAACT
**
45034506 ATACATATGT
1 -TACATAACT
45034516 TACATAACT
1 TACATAACT
*
45034525 TACATTAATAT
1 TACA-TAA-CT
*
45034536 GATACATAAAT
1 --TACATAACT
45034547 TACATAACT
1 TACATAACT
**
45034556 TAGTTAA-T
1 TACATAACT
*
45034564 TA-AT-ATT
1 TACATAACT
45034571 ATACATAACT
1 -TACATAACT
45034581 TAC--AACT
1 TACATAACT
45034588 TAC--AACT
1 TACATAACT
45034595 TACATAACT
1 TACATAACT
*
45034604 TACAT--TT
1 TACATAACT
***
45034611 TTTTTAA-T
1 TACATAACT
*
45034619 TATTCATAAAT
1 TA--CATAACT
45034630 TACATAACT
1 TACATAACT
* *
45034639 TA-ATTAGT
1 TACATAACT
45034647 TA-AT-A--
1 TACATAACT
*
45034652 TACATAAAT
1 TACATAACT
45034661 TACATAACT
1 TACATAACT
45034670 TA-ATTAA-T
1 TACA-TAACT
*
45034678 TA-ATTAATAT
1 TACA-TAA-CT
*
45034688 TATACATAAAT
1 T--ACATAACT
45034699 TACATAACT
1 TACATAACT
**
45034708 TAGTTAA-T
1 TACATAACT
*
45034716 TAACATTA--
1 T-ACATAACT
*
45034724 TACATAATT
1 TACATAACT
45034733 TAC--AACT
1 TACATAACT
45034740 TACATAACT
1 TACATAACT
45034749 TAC--AACT
1 TACATAACT
45034756 TACATAACT
1 TACATAACT
***
45034765 TACAATTTTT
1 TAC-ATAACT
*
45034775 TA-ATTA-T
1 TACATAACT
* *
45034782 T-CGTAAAT
1 TACATAACT
45034790 TACATAACT
1 TACATAACT
* *
45034799 TACTTAATT
1 TACATAACT
*
45034808 TTCATAA--
1 TACATAACT
*
45034815 TAAATAACT
1 TACATAACT
45034824 TACATAACT
1 TACATAACT
45034833 TAC--AACT
1 TACATAACT
45034840 TACATAACT
1 TACATAACT
* * *
45034849 TATATGACA
1 TACATAACT
45034858 TACATAACT
1 TACATAACT
* *
45034867 TACATAGCA
1 TACATAACT
*
45034876 TA-ATTTGACT
1 TACA--TAACT
*
45034886 AATACACAACT
1 --TACATAACT
*
45034897 TACATAATT
1 TACATAACT
*
45034906 TTCATAA--
1 TACATAACT
*
45034913 TAAATAACT
1 TACATAACT
45034922 TACATAACT
1 TACATAACT
45034931 TAC--AACT
1 TACATAACT
45034938 TACATAACT
1 TACATAACT
* * *
45034947 TATATGACA
1 TACATAACT
45034956 TACATAACT
1 TACATAACT
* *
45034965 TACATAGCA
1 TACATAACT
*
45034974 TA-ATTTGACT
1 TACA--TAACT
*
45034984 AATACACAACT
1 --TACATAACT
*
45034995 TACATAATT
1 TACATAACT
*
45035004 TTCATAA--
1 TACATAACT
*
45035011 TAAATAACT
1 TACATAACT
45035020 TACATAA--
1 TACATAACT
45035027 TACATAACT
1 TACATAACT
45035036 TAC
1 TAC
45035039 GTAGCTTAGT
Statistics
Matches: 459, Mismatches: 89, Indels: 142
0.67 0.13 0.21
Matches are distributed among these distances:
5 4 0.01
6 7 0.02
7 83 0.18
8 44 0.10
9 255 0.56
10 23 0.05
11 18 0.04
12 14 0.03
13 11 0.02
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (9 bp):
TACATAACT
Found at i:45034717 original size:34 final size:34
Alignment explanation
Indices: 45034480--45034736 Score: 184
Period size: 34 Copynumber: 7.2 Consensus size: 34
45034470 TGATACATAA
*
45034480 ATTACATAACTTAGTTAATTAATATTATACATAT
1 ATTACATAACTTAGTTAATTAATATTATACATAA
* * *
45034514 GTTACATAACTTA---CATTAATATGATACATAA
1 ATTACATAACTTAGTTAATTAATATTATACATAA
45034545 ATTACATAACTTAGTTAATTAATATTATACATAA
1 ATTACATAACTTAGTTAATTAATATTATACATAA
* ** *
45034579 CTTACAACTTACAACTTACATAACTTACATTTTTTTTAATTATTCATAA
1 ATTAC-A--T--AACTTAGTTAA-TTA-A-------T-ATTATACATAA
* *
45034628 ATTACATAACTTAATTAGTT-A-A-TATACATAA
1 ATTACATAACTTAGTTAATTAATATTATACATAA
*
45034659 ATTACATAACTTAATTAATTAATTAATATTATACATAA
1 ATTACATAAC----TTAGTTAATTAATATTATACATAA
*
45034697 ATTACATAACTTAGTTAATTAACATTATACATAA
1 ATTACATAACTTAGTTAATTAATATTATACATAA
*
45034731 TTTACA
1 ATTACA
45034737 ACTTACATAA
Statistics
Matches: 178, Mismatches: 20, Indels: 50
0.72 0.08 0.20
Matches are distributed among these distances:
31 45 0.25
32 1 0.01
34 59 0.33
35 10 0.06
36 1 0.01
37 2 0.01
38 19 0.11
39 9 0.05
40 3 0.02
41 2 0.01
43 2 0.01
44 8 0.04
46 1 0.01
48 2 0.01
49 14 0.08
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.41
Consensus pattern (34 bp):
ATTACATAACTTAGTTAATTAATATTATACATAA
Found at i:45034743 original size:16 final size:16
Alignment explanation
Indices: 45034724--45034968 Score: 103
Period size: 16 Copynumber: 14.8 Consensus size: 16
45034714 ATTAACATTA
*
45034724 TACATAATTTACAACT
1 TACATAACTTACAACT
45034740 TACATAACTTACAACT
1 TACATAACTTACAACT
45034756 TACATAACTTACAA-T
1 TACATAACTTACAACT
*** *
45034771 TTTTTAA-TTATTCGTAAAT
1 TACATAACTTA--C--AACT
*
45034790 TACATAACTTACTTAATT
1 TACATAACTTAC--AACT
* * *
45034808 TTCATAA-TAAATAACT
1 TACATAACT-TACAACT
45034824 TACATAACTTACAACT
1 TACATAACTTACAACT
* *
45034840 TACATAACTTATATGACA
1 TACATAACTTACA--ACT
45034858 TACATAACTTAC-A--
1 TACATAACTTACAACT
*
45034871 TAGCATAATTTGACTAA--
1 TA-CATAACTT-AC-AACT
* *
45034888 TACACAACTTACATAATT
1 TACATAACTTAC--AACT
* * *
45034906 TTCATAA-TAAATAACT
1 TACATAACT-TACAACT
45034922 TACATAACTTACAACT
1 TACATAACTTACAACT
* *
45034938 TACATAACTTATATGACA
1 TACATAACTTACA--ACT
45034956 TACATAACTTACA
1 TACATAACTTACA
45034969 TAGCATAATT
Statistics
Matches: 175, Mismatches: 33, Indels: 40
0.71 0.13 0.16
Matches are distributed among these distances:
13 2 0.01
14 10 0.06
15 10 0.06
16 91 0.52
17 7 0.04
18 47 0.27
19 5 0.03
20 3 0.02
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.36
Consensus pattern (16 bp):
TACATAACTTACAACT
Found at i:45034752 original size:25 final size:25
Alignment explanation
Indices: 45034724--45034948 Score: 80
Period size: 25 Copynumber: 9.1 Consensus size: 25
45034714 ATTAACATTA
45034724 TACATAATTTACAACTTACATAACT
1 TACATAATTTACAACTTACATAACT
* ***
45034749 TAC--AACTTACATAACTTACAATTTTT
1 TACATAATTTAC--AACTTAC-ATAACT
*
45034775 TA-ATTATTCGTA-AA-TTACATAACT
1 TACATAATT--TACAACTTACATAACT
* * * *
45034799 TACTTAATTTTCATA-ATAAATAACT
1 TACATAATTTACA-ACTTACATAACT
*
45034824 TACATAACTTACAACTTACATAACT
1 TACATAATTTACAACTTACATAACT
* ** *
45034849 TATATGACATACATAACTTACAT-A--
1 TACAT-A-ATTTACAACTTACATAACT
* *
45034873 -GCATAATTTGACTAA--TACACAACT
1 TACATAATTT-AC-AACTTACATAACT
* * *
45034897 TACATAATTTTCATA-ATAAATAACT
1 TACATAATTTACA-ACTTACATAACT
*
45034922 TACATAACTTACAACTTACATAACT
1 TACATAATTTACAACTTACATAACT
45034947 TA
1 TA
45034949 TATGACATAC
Statistics
Matches: 140, Mismatches: 38, Indels: 44
0.63 0.17 0.20
Matches are distributed among these distances:
21 6 0.04
22 3 0.02
23 12 0.09
24 10 0.07
25 85 0.61
26 9 0.06
27 13 0.09
29 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.37
Consensus pattern (25 bp):
TACATAATTTACAACTTACATAACT
Found at i:45034914 original size:98 final size:98
Alignment explanation
Indices: 45034790--45035026 Score: 456
Period size: 98 Copynumber: 2.4 Consensus size: 98
45034780 ATTCGTAAAT
* *
45034790 TACATAACTTACTTAATTTTCATAATAAATAACTTACATAACTTACAACTTACATAACTTATATG
1 TACACAACTTACATAATTTTCATAATAAATAACTTACATAACTTACAACTTACATAACTTATATG
45034855 ACATACATAACTTACATAGCATAATTTGACTAA
66 ACATACATAACTTACATAGCATAATTTGACTAA
45034888 TACACAACTTACATAATTTTCATAATAAATAACTTACATAACTTACAACTTACATAACTTATATG
1 TACACAACTTACATAATTTTCATAATAAATAACTTACATAACTTACAACTTACATAACTTATATG
45034953 ACATACATAACTTACATAGCATAATTTGACTAA
66 ACATACATAACTTACATAGCATAATTTGACTAA
45034986 TACACAACTTACATAATTTTCATAATAAATAACTTACATAA
1 TACACAACTTACATAATTTTCATAATAAATAACTTACATAA
45035027 TACATAACTT
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 137 1.00
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.35
Consensus pattern (98 bp):
TACACAACTTACATAATTTTCATAATAAATAACTTACATAACTTACAACTTACATAACTTATATG
ACATACATAACTTACATAGCATAATTTGACTAA
Found at i:45035000 original size:25 final size:25
Alignment explanation
Indices: 45034972--45035027 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
45034962 ACTTACATAG
*
45034972 CATAATTTGAC-TAATACACAACTTA
1 CATAATTT-ACATAATAAACAACTTA
* *
45034997 CATAATTTTCATAATAAATAACTTA
1 CATAATTTACATAATAAACAACTTA
45035022 CATAAT
1 CATAAT
45035028 ACATAACTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (25 bp):
CATAATTTACATAATAAACAACTTA
Found at i:45035017 original size:16 final size:16
Alignment explanation
Indices: 45035006--45035038 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
45034996 ACATAATTTT
45035006 CATAATAAATAACTTA
1 CATAATAAATAACTTA
*
45035022 CATAATACATAACTTA
1 CATAATAAATAACTTA
45035038 C
1 C
45035039 GTAGCTTAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (16 bp):
CATAATAAATAACTTA
Found at i:45040573 original size:66 final size:66
Alignment explanation
Indices: 45040490--45040636 Score: 190
Period size: 66 Copynumber: 2.2 Consensus size: 66
45040480 GAGGCAACAT
*
45040490 CGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCTAGCTA-CAACTGAAAGCAGATCCAG
1 CGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCAGC-AGCAACTGAAAGCAGATCCAG
45040553 CAG
64 CAG
* * * * *
45040556 CGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAGCAGCAGCTTAAAGCAGATGCGGCA
1 CGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTGAAAGCAGATCCAGCA
45040621 G
66 G
* *
45040622 CAAGAGAAGCAGAGG
1 CGAGAGAAGCTGAGG
45040637 CGGCAGCAAG
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
65 1 0.01
66 66 0.93
67 4 0.06
ACGTcount: A:0.40, C:0.18, G:0.29, T:0.13
Consensus pattern (66 bp):
CGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGCAGCAACTGAAAGCAGATCCAGCA
G
Found at i:45040633 original size:21 final size:21
Alignment explanation
Indices: 45040607--45040698 Score: 94
Period size: 21 Copynumber: 4.4 Consensus size: 21
45040597 CAGCAGCTTA
*
45040607 AAGCAGATGCGGCAGCAAGAG
1 AAGCAGAGGCGGCAGCAAGAG
45040628 AAGCAGAGGCGGCAGCAAGAG
1 AAGCAGAGGCGGCAGCAAGAG
* * ** * *
45040649 AAGTATAGGCTACAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
* * *
45040670 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCAAGAG
45040691 AAGCAGAG
1 AAGCAGAG
45040699 CAGCGTCAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 61 1.00
ACGTcount: A:0.36, C:0.17, G:0.41, T:0.05
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCAAGAG
Found at i:45041103 original size:43 final size:43
Alignment explanation
Indices: 45041056--45041561 Score: 419
Period size: 43 Copynumber: 11.8 Consensus size: 43
45041046 GTTTTTGGTC
* *
45041056 AAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAA
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* ** * * **
45041099 AAAGCGCCACTAAAGATCATAGTCTTTAGTGGCGTTTTTGGTC
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* *
45041142 AAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAA
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* ** * * **
45041185 AAAGCGCCACTAAAGATCATAGTCTTTAGTGGCGTTTTTGGTC
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* *
45041228 AAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAA
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* ** * * **
45041271 AAAGCGCCACTAAAGATCATAGTCTTTAGTGGCGTTTTTGGTC
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* **
45041314 AAAGCGCCGCTAAAGATCAGGGTCTATT-GCGGCGTTTGAGGGG
1 AAAGCGCCGCTAAAGATCAGGGTCT-TTAGCGGCGTTTGTGGAA
* ** * ** * *
45041357 AAAGCGCCGCTAAAGACCCTGATCTTTAGTTGCGTTTTTGGGA
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* * * *
45041400 GAAGCGCCGCTAAAGATAAGGATCTTTAGCGGCGTTTG-AGAGA
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGA-A
* * * * ***
45041443 GAAGCACCGTTAAAGACCCTTGTCTTTAGCGGCGTTTTAGTGG--
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCG-TTT-GTGGAA
* * *** * *
45041486 -AAGTGCCGCTAAAGGTCTTAGTCTTCAGCGGCGTTTGTGCAA
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* *
45041528 AATGCGCCGTTAAAGATCAGGGTCTTTAGCGGCG
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCG
45041562 CATTCATTAG
Statistics
Matches: 356, Mismatches: 98, Indels: 18
0.75 0.21 0.04
Matches are distributed among these distances:
40 3 0.01
41 3 0.01
42 28 0.08
43 315 0.88
44 5 0.01
45 1 0.00
46 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
Found at i:45041480 original size:86 final size:86
Alignment explanation
Indices: 45041036--45041437 Score: 639
Period size: 86 Copynumber: 4.7 Consensus size: 86
45041026 AGGTGTTGGC
*
45041036 CTTTAGTGACGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAAAA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAAAA
45041101 AGCGCCACTAAAGATCATAGT
66 AGCGCCACTAAAGATCATAGT
45041122 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAAAA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAAAA
45041187 AGCGCCACTAAAGATCATAGT
66 AGCGCCACTAAAGATCATAGT
45041208 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAAAA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAAAA
45041273 AGCGCCACTAAAGATCATAGT
66 AGCGCCACTAAAGATCATAGT
* * * **
45041294 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATCAGGGTCTATT-GCGGCGTTTGAGGGGA
1 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGGCT-TTAGCGGCGTTTGTGGAAA
* * *
45041358 AAGCGCCGCTAAAGACCCT-GAT
65 AAGCGCCACTAAAGATCATAG-T
* * **
45041380 CTTTAGTTGCGTTTTTGG-GAGAAGCGCCGCTAAAGATAAGGATCTTTAGCGGCGTTTG
1 CTTTAGTGGCGTTTTTGGTCA-AAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTG
45041438 AGAGAGAAGC
Statistics
Matches: 299, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
85 4 0.01
86 293 0.98
87 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (86 bp):
CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGGCTTTAGCGGCGTTTGTGGAAAA
AGCGCCACTAAAGATCATAGT
Found at i:45041652 original size:22 final size:22
Alignment explanation
Indices: 45041624--45041666 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
45041614 CTACGGCGCT
*
45041624 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
45041646 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
45041667 GTTTGGTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.42, C:0.28, G:0.21, T:0.09
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:45042748 original size:37 final size:35
Alignment explanation
Indices: 45042707--45042800 Score: 91
Period size: 37 Copynumber: 2.5 Consensus size: 35
45042697 TATATGTGTG
*
45042707 GAATTGAATTGAATAT-TGACTTGAAAAATGGAAAAGT
1 GAATTGAATTGAAT-TGTGA-TTG-AAAATGAAAAAGT
*
45042744 GAATTTTGAATTGAATTGTGATTGAAAGTGAAAAAGT
1 GAA--TTGAATTGAATTGTGATTGAAAATGAAAAAGT
* *
45042781 GAAATTGAACTGAAATGTGA
1 G-AATTGAATTGAATTGTGA
45042801 ATTTGGAGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
36 14 0.29
37 15 0.31
38 6 0.12
39 14 0.29
ACGTcount: A:0.44, C:0.02, G:0.23, T:0.31
Consensus pattern (35 bp):
GAATTGAATTGAATTGTGATTGAAAATGAAAAAGT
Found at i:45049103 original size:74 final size:74
Alignment explanation
Indices: 45048982--45049131 Score: 291
Period size: 74 Copynumber: 2.0 Consensus size: 74
45048972 TATGTCTTCG
45048982 TGAGATTTTCATCTCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCAGTCCATATG
1 TGAGATTTTCATCTCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCAGTCCATATG
45049047 AGCCTATAA
66 AGCCTATAA
*
45049056 TGAGATTTTCATCTCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCGGTCCATATG
1 TGAGATTTTCATCTCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCAGTCCATATG
45049121 AGCCTATAA
66 AGCCTATAA
45049130 TG
1 TG
45049132 GGTGAGGATC
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (74 bp):
TGAGATTTTCATCTCCGCATGGCCATAGGGAAATGTATTCCCCTGAACTGAACTCAGTCCATATG
AGCCTATAA
Found at i:45058286 original size:64 final size:64
Alignment explanation
Indices: 45058185--45058313 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
45058175 CCACAACTCA
45058185 TCGCCATATCGTCCGAAGATGAATGGTGCGGTGGAGGCAGCCAATAAAAATATCAAAAAAATTG
1 TCGCCATATCGTCCGAAGATGAATGGTGCGGTGGAGGCAGCCAATAAAAATATCAAAAAAATTG
*
45058249 TCGCCATATCGTCCGAAGATGAATGGTGCGGTGGAGGCAGCCAATAAAAATATCAAAAAGATTG
1 TCGCCATATCGTCCGAAGATGAATGGTGCGGTGGAGGCAGCCAATAAAAATATCAAAAAAATTG
45058313 T
1 T
45058314 AGGGAAAATG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (64 bp):
TCGCCATATCGTCCGAAGATGAATGGTGCGGTGGAGGCAGCCAATAAAAATATCAAAAAAATTG
Found at i:45058906 original size:44 final size:44
Alignment explanation
Indices: 45058856--45058993 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
45058846 AGGCCAAGGC
45058856 GAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATT
1 GAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATT
* * * * ***** **
45058900 GAAAACCCAGGAATGGGCA-ATT----CAAAAGGGAGAGGCCAAGGC
1 GAAAACCC-GCAAAGGGCACCTTGAGACCAAAGGG-GCTTTGAA-TT
45058942 GAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATT
1 GAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATT
45058986 GAAAACCC
1 GAAAACCC
45058994 AGGAATGGGC
Statistics
Matches: 64, Mismatches: 22, Indels: 16
0.63 0.22 0.16
Matches are distributed among these distances:
40 7 0.11
41 11 0.17
42 10 0.16
44 18 0.28
45 11 0.17
46 7 0.11
ACGTcount: A:0.37, C:0.22, G:0.28, T:0.12
Consensus pattern (44 bp):
GAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATT
Found at i:45058948 original size:86 final size:86
Alignment explanation
Indices: 45058837--45059011 Score: 341
Period size: 86 Copynumber: 2.0 Consensus size: 86
45058827 TGCCTAAAAA
45058837 AAAAAGGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATTGA
1 AAAAAGGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATTGA
45058902 AAACCCAGGAATGGGCAATTC
66 AAACCCAGGAATGGGCAATTC
*
45058923 AAAAGGGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATTGA
1 AAAAAGGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATTGA
45058988 AAACCCAGGAATGGGCAATTC
66 AAACCCAGGAATGGGCAATTC
45059009 AAA
1 AAA
45059012 TTTTCGATCA
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.39, C:0.21, G:0.29, T:0.11
Consensus pattern (86 bp):
AAAAAGGAGAGGCCAAGGCGAAAACCCGCAAAGGGCACCTTGAGACCAAAGGGGCTTTGAATTGA
AAACCCAGGAATGGGCAATTC
Found at i:45066996 original size:17 final size:18
Alignment explanation
Indices: 45066972--45067012 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
45066962 ATGATATTCA
45066972 ATTAAAA-TAACA-AAAT
1 ATTAAAATTAACACAAAT
45066988 ATATAAAATTAACACAAAT
1 AT-TAAAATTAACACAAAT
45067007 ATTAAA
1 ATTAAA
45067013 GTTTTACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.09
17 5 0.23
18 9 0.41
19 6 0.27
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (18 bp):
ATTAAAATTAACACAAAT
Found at i:45070945 original size:23 final size:23
Alignment explanation
Indices: 45070919--45070962 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
45070909 ATTACCATTT
45070919 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAATAATAATAAATA
* *
45070942 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATAATAATAAA
45070963 ATAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (23 bp):
TCTAAATAAAATAATAATAAATA
Found at i:45070955 original size:13 final size:11
Alignment explanation
Indices: 45070923--45070965 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
45070913 CCATTTTCTA
*
45070923 AATAAAATAAT
1 AATAAAATATT
45070934 AAT-AAATATCT
1 AATAAAATAT-T
45070945 AAGTAAAATATT
1 AA-TAAAATATT
45070957 AATAAAATA
1 AATAAAATA
45070966 ATTTTTAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 4 0.14
13 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (11 bp):
AATAAAATATT
Found at i:45072486 original size:13 final size:14
Alignment explanation
Indices: 45072462--45072489 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45072452 AATTTGGTCA
45072462 TATTTTTAAAAAAT
1 TATTTTTAAAAAAT
45072476 TATTTTTAAAAAAT
1 TATTTTTAAAAAAT
45072490 AATATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTTTTAAAAAAT
Found at i:45072519 original size:16 final size:16
Alignment explanation
Indices: 45072500--45072533 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
45072490 AATATAATAT
*
45072500 ATTATTAATCAATAAA
1 ATTATAAATCAATAAA
*
45072516 ATTATAAATCTATAAA
1 ATTATAAATCAATAAA
45072532 AT
1 AT
45072534 ATTGAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTATAAATCAATAAA
Found at i:45074418 original size:13 final size:13
Alignment explanation
Indices: 45074400--45074424 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45074390 AATTATTTTT
45074400 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
45074413 TGCTTTTGAAAA
1 TGCTTTTGAAAA
45074425 ATATTGTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:45082140 original size:4 final size:4
Alignment explanation
Indices: 45082131--45082160 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
45082121 ACAGAGTCTT
45082131 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
45082161 TGAAAGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAC
Found at i:45086401 original size:75 final size:77
Alignment explanation
Indices: 45086299--45086476 Score: 181
Period size: 77 Copynumber: 2.4 Consensus size: 77
45086289 GTATATTAGC
* * **
45086299 GTTAGTGGCGCTTTAA--CAAAACGCCGC-AATATATGTTAACCAAAATGCAGC-ATTTGGCCTA
1 GTTAGTGGCGC-TTAATGGAAAACGCCGCAAAAATATCCTAACCAAAATGCAGCGATTTGGCCTA
45086360 GAG-GTATGTTACA
65 G-GTGTATGTTACA
* * * *
45086373 GTTTA-TGGCGCTT-ATGGGAAAACGCCGCAAAAATATCCTAACCAAAGTGCATCGTTTTGGTCT
1 G-TTAGTGGCGCTTAAT-GGAAAACGCCGCAAAAATATCCTAACCAAAATGCAGCGATTTGGCCT
*
45086436 TGGTGTATGTTACA
64 AGGTGTATGTTACA
*
45086450 GTTAGTGGCGCTTAATGTAAAACGCCG
1 GTTAGTGGCGCTTAATGGAAAACGCCG
45086477 GTAAAGTATA
Statistics
Matches: 85, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
72 1 0.01
73 2 0.02
74 7 0.08
75 13 0.15
76 23 0.27
77 37 0.44
78 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (77 bp):
GTTAGTGGCGCTTAATGGAAAACGCCGCAAAAATATCCTAACCAAAATGCAGCGATTTGGCCTAG
GTGTATGTTACA
Found at i:45086915 original size:229 final size:229
Alignment explanation
Indices: 45086472--45087002 Score: 519
Period size: 229 Copynumber: 2.3 Consensus size: 229
45086462 TAATGTAAAA
* * * * ** **
45086472 CGCCGGTAAAGTATAATATTAGCGGCG-TGTTGTGGTAAGCGCCGCAAAACCT-CTTAACCAAAA
1 CGCCGCTAAAGCATAGTATTAGCGGCGCT-TTCTGACAAGCGCCGCAAAATATAC-TAACCAAAA
* * * * *** *
45086535 CGCAGAGTTTGGT-CTTGAGGTATACTAGAATTAGTGGCGC--AGAGCGA-ACACGCCACTAATG
64 CGCAGAGTTT-TTACATGAGGTATATTAGAATTAATGGCGCTTTTTG-GAGAC-CGCCACTAAAG
** **
45086596 TATACTATTAGCGGCGCTTTTGTATAAGCGCCGCAAAATTTGACAACAAAAACGCAACGTTTTTG
126 TATACTATTAGCGGCGCTTTTGTATAAGCGCCGCAAAAGATGACAACAAAAACGCAACGTTTAAG
**
45086661 TCTCGATGTATACAGTTACTAGTGGCGCATAT-A-AAGAAA-
191 TCTCGATGTATACAGGAACTAGTGGCG--T-TCACAAGAAAT
* * *
45086700 CGCCGCTAAATCATAGTATTAGTGGCGC-TTCTGCACAAGCGCCGCAAAATATACTCACCAAAAC
1 CGCCGCTAAAGCATAGTATTAGCGGCGCTTTCTG-ACAAGCGCCGCAAAATATACTAACCAAAAC
* *
45086764 GCTGAGTTTTTACATGAGGTATATTAGAATTAATGGCGCTTTTTGGAGACCGCCGCTAAAGTATA
65 GCAGAGTTTTTACATGAGGTATATTAGAATTAATGGCGCTTTTTGGAGACCGCCACTAAAGTATA
* * *
45086829 TTATTAGCGGCGCTCTTT-TATAAGCGCCGCAAAAGAT-ATTAACAAAAACGCAGCGTTTAAGTC
130 CTATTAGCGGCGCT-TTTGTATAAGCGCCGCAAAAGATGA-CAACAAAAACGCAACGTTTAAGTC
* * * *
45086892 TTGATGTATACTGGAATTAGTGGCGTTCACGAGAAAT
193 TCGATGTATACAGGAACTAGTGGCGTTCACAAGAAAT
* * * * * *
45086929 CGCCGCTAAAGCATGGTATTAGCGGCGCTTTTTGATAAGCGCCGGAAAATGTATTAACCAAAACG
1 CGCCGCTAAAGCATAGTATTAGCGGCGCTTTCTGACAAGCGCCGCAAAATATACTAACCAAAACG
45086994 CAGAGTTTT
66 CAGAGTTTT
45087003 GGTCTTAACC
Statistics
Matches: 246, Mismatches: 44, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
226 1 0.00
227 7 0.03
228 83 0.34
229 145 0.59
230 10 0.04
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (229 bp):
CGCCGCTAAAGCATAGTATTAGCGGCGCTTTCTGACAAGCGCCGCAAAATATACTAACCAAAACG
CAGAGTTTTTACATGAGGTATATTAGAATTAATGGCGCTTTTTGGAGACCGCCACTAAAGTATAC
TATTAGCGGCGCTTTTGTATAAGCGCCGCAAAAGATGACAACAAAAACGCAACGTTTAAGTCTCG
ATGTATACAGGAACTAGTGGCGTTCACAAGAAAT
Found at i:45087008 original size:115 final size:114
Alignment explanation
Indices: 45086451--45087008 Score: 401
Period size: 115 Copynumber: 4.9 Consensus size: 114
45086441 TATGTTACAG
* * * * * *
45086451 TTAGTGGCGCTTAATGTA-AAACGCCGGTAAAGTATAATATTAGCGGCG-TGTTGTGGTAAGCGC
1 TTAGTGGCGCTTCA-G-AGAAACGCCGCTAAAGCATAGTATTAGCGGCGCT-TTTTGATAAGCGC
** *
45086514 CGCAAAACCTCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATACTAGAA
63 CGCAAAATGTATTAACCAAAACGCAGAGTTTTGGTCTTGAGGTATACTAGAA
** * * * * *
45086565 TTAGTGGCGC-AGAGCGAACACGCCACTAATGTATACTATTAGCGGCGC-TTTTGTATAAGCGCC
1 TTAGTGGCGCTTCAGAGAA-ACGCCGCTAAAGCATAGTATTAGCGGCGCTTTTTG-ATAAGCGCC
* * * * * * *
45086628 GCAAAATTTGA-CAACAAAAACGCA-ACGTTTTTGTCTCGATGTATAC-AGTTA
64 GCAAAATGT-ATTAACCAAAACGCAGA-GTTTTGGTCTTGAGGTATACTAG-AA
* * * * * *
45086679 CTAGTGGCGCATAT-AAAGAAACGCCGCTAAATCATAGTATTAGTGGCGC-TTCTGCACAAGCGC
1 TTAGTGGCGC-T-TCAGAGAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTTTTG-ATAAGCGC
* * * * * *
45086742 CGCAAAATATACTCACCAAAACGCTGAGTTTT--TACATGAGGTATATTAGAA
63 CGCAAAATGTATTAACCAAAACGCAGAGTTTTGGT-CTTGAGGTATACTAGAA
* ** * * *
45086793 TTAATGGCGCTTTTTG-GAGACCGCCGCTAAAGTATATTATTAGCGGCGCTCTTTT-ATAAGCGC
1 TTAGTGGCGC-TTCAGAGA-AACGCCGCTAAAGCATAGTATTAGCGGCGCT-TTTTGATAAGCGC
* * ** * *
45086856 CGCAAAA-GATATTAACAAAAACGCAGCGTTTAAGTCTTGATGTATACTGGAA
63 CGCAAAATG-TATTAACCAAAACGCAGAGTTTTGGTCTTGAGGTATACTAGAA
*
45086908 TTAGTGGCG-TTCACGAGAAATCGCCGCTAAAGCATGGTATTAGCGGCGCTTTTTGATAAGCGCC
1 TTAGTGGCGCTTCA-GAGAAA-CGCCGCTAAAGCATAGTATTAGCGGCGCTTTTTGATAAGCGCC
*
45086972 GGAAAATGTATTAACCAAAACGCAGAGTTTTGGTCTT
64 GCAAAATGTATTAACCAAAACGCAGAGTTTTGGTCTT
45087009 AACCATGCAT
Statistics
Matches: 341, Mismatches: 76, Indels: 53
0.73 0.16 0.11
Matches are distributed among these distances:
112 8 0.02
113 60 0.18
114 116 0.34
115 147 0.43
116 10 0.03
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (114 bp):
TTAGTGGCGCTTCAGAGAAACGCCGCTAAAGCATAGTATTAGCGGCGCTTTTTGATAAGCGCCGC
AAAATGTATTAACCAAAACGCAGAGTTTTGGTCTTGAGGTATACTAGAA
Found at i:45087092 original size:21 final size:20
Alignment explanation
Indices: 45087068--45087106 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
45087058 TTTGGTCTAT
*
45087068 GGTTTATGGTTTAAAGGTTGG
1 GGTTTAAGGTTT-AAGGTTGG
45087089 GGTTTAAGGTTTAAGGTT
1 GGTTTAAGGTTTAAGGTT
45087107 TAAGGTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.44
Consensus pattern (20 bp):
GGTTTAAGGTTTAAGGTTGG
Found at i:45087099 original size:7 final size:7
Alignment explanation
Indices: 45087089--45087113 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
45087079 TAAAGGTTGG
45087089 GGTTTAA
1 GGTTTAA
45087096 GGTTTAA
1 GGTTTAA
45087103 GGTTTAA
1 GGTTTAA
45087110 GGTT
1 GGTT
45087114 AATATGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (7 bp):
GGTTTAA
Found at i:45088897 original size:178 final size:178
Alignment explanation
Indices: 45088591--45088949 Score: 580
Period size: 178 Copynumber: 2.0 Consensus size: 178
45088581 AAATTATAAA
45088591 AATATAAATCAATACAATGATAGAATTATATGTTCATTCTCATAAGAATATATAAGGTAATGCCA
1 AATATAAATCAATACAATGATAGAATTATATGTTCATTCTCATAAGAATATATAAGGTAATGCCA
* *
45088656 GACCTTAAAAAATTTCTTTCTCCTCTTTCCTCACTGGAGGTAAGATATGAGGACAAGGCCTTGAT
66 GACCTTAAAAAATTTCTTTCTCCTCTTTCCTCACTGGAGGTAAGACATGAGGACAAAGCCTTGAT
*
45088721 AATGGAATAAAGATAGGCGAA-GAGATGGACC-AGCAGTTCATGTCTAAT
131 AATGGAATAAAGATAGGC-AACAAGATGGACCAAG-AGTTCATGTCTAAT
* * * *
45088769 AATATAAATCAATCCAATGATAGAATTATATGTTGATTCTCATAAGAATATATAAGGTGATGTCA
1 AATATAAATCAATACAATGATAGAATTATATGTTCATTCTCATAAGAATATATAAGGTAATGCCA
** *
45088834 GACCTTCCAAAATTTCTCTT-TCCTCTTTCTTCACTGGAGGTAAGACATGAGGACAAAGCCTTGA
66 GACCTTAAAAAATTTCT-TTCTCCTCTTTCCTCACTGGAGGTAAGACATGAGGACAAAGCCTTGA
45088898 TAATGGAATAAAGATAGGCAACAAGATGGACCAAGAGTTCATGTCTAAT
130 TAATGGAATAAAGATAGGCAACAAGATGGACCAAGAGTTCATGTCTAAT
45088947 AAT
1 AAT
45088950 TATCTAGGAT
Statistics
Matches: 168, Mismatches: 10, Indels: 6
0.91 0.05 0.03
Matches are distributed among these distances:
177 2 0.01
178 162 0.96
179 4 0.02
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (178 bp):
AATATAAATCAATACAATGATAGAATTATATGTTCATTCTCATAAGAATATATAAGGTAATGCCA
GACCTTAAAAAATTTCTTTCTCCTCTTTCCTCACTGGAGGTAAGACATGAGGACAAAGCCTTGAT
AATGGAATAAAGATAGGCAACAAGATGGACCAAGAGTTCATGTCTAAT
Found at i:45089225 original size:36 final size:36
Alignment explanation
Indices: 45089134--45089231 Score: 144
Period size: 35 Copynumber: 2.8 Consensus size: 36
45089124 ATTTGTGATA
* * *
45089134 TAGACCACATATAAGCTTGATTTTGATAGCATATTT
1 TAGATCACATATATGCTTGACTTTGATAGCATATTT
*
45089170 T-GATCACATATGTGCTTGACTTTGATAGCATATTT
1 TAGATCACATATATGCTTGACTTTGATAGCATATTT
*
45089205 TAGATCACATATATGTTTGACTTTGAT
1 TAGATCACATATATGCTTGACTTTGAT
45089232 TTAATTCACT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
35 31 0.56
36 24 0.44
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (36 bp):
TAGATCACATATATGCTTGACTTTGATAGCATATTT
Found at i:45095440 original size:20 final size:20
Alignment explanation
Indices: 45095415--45095452 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
45095405 TCGTTCTCTC
45095415 TTTTTTTT-TTTAATTTTTG
1 TTTTTTTTCTTTAATTTTTG
45095434 TTTTTTTTCTTTAATTTTT
1 TTTTTTTTCTTTAATTTTT
45095453 CCTTTCTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.11, C:0.03, G:0.03, T:0.84
Consensus pattern (20 bp):
TTTTTTTTCTTTAATTTTTG
Found at i:45103301 original size:22 final size:22
Alignment explanation
Indices: 45103271--45103313 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
45103261 TACCAGTTAT
*
45103271 AAATCAAAACAATAAAAATCCC
1 AAATCAAAAAAATAAAAATCCC
* *
45103293 AAATTAAAAAAATATAAATCC
1 AAATCAAAAAAATAAAAATCC
45103314 AAAGAGGTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.16, G:0.00, T:0.19
Consensus pattern (22 bp):
AAATCAAAAAAATAAAAATCCC
Found at i:45118553 original size:20 final size:20
Alignment explanation
Indices: 45118517--45118572 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
45118507 TTTAAATTAA
*
45118517 AATTAATTTTTAAATAATTT-
1 AATTAATTTTT-TATAATTTC
45118537 ATATTAATTTTTTATAATTTC
1 A-ATTAATTTTTTATAATTTC
45118558 AA-TAATTTTTT-TAAT
1 AATTAATTTTTTATAAT
45118573 AATTTTTAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.12
19 9 0.27
20 9 0.27
21 11 0.33
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
AATTAATTTTTTATAATTTC
Found at i:45118554 original size:10 final size:10
Alignment explanation
Indices: 45118520--45118591 Score: 65
Period size: 10 Copynumber: 7.0 Consensus size: 10
45118510 AAATTAAAAT
45118520 TAATTTTTAAA
1 TAATTTTT-AA
* *
45118531 TAATTTATAT
1 TAATTTTTAA
*
45118541 TAATTTTTTA
1 TAATTTTTAA
*
45118551 TAA-TTTCAA
1 TAATTTTTAA
45118560 TAATTTTTTTAA
1 TAA--TTTTTAA
45118572 TAATTTTTAA
1 TAATTTTTAA
*
45118582 TAAATTTTAA
1 TAATTTTTAA
45118592 ATGATTTTAT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
9 7 0.14
10 27 0.55
11 7 0.14
12 8 0.16
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.58
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:45118589 original size:21 final size:21
Alignment explanation
Indices: 45118521--45118599 Score: 63
Period size: 21 Copynumber: 3.8 Consensus size: 21
45118511 AATTAAAATT
* *
45118521 AATTTTTAAATAATTTAT-ATT
1 AATTTTT-AATAATTTTTAATA
* *
45118542 AATTTTTTATAA-TTTCAATA
1 AATTTTTAATAATTTTTAATA
*
45118562 ATTTTTTTAATAATTTTTAATA
1 A-ATTTTTAATAATTTTTAATA
* *
45118584 AATTTTAAATGATTTT
1 AATTTTTAATAATTTT
45118600 ATAGATATTT
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
19 2 0.04
20 7 0.16
21 28 0.62
22 8 0.18
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (21 bp):
AATTTTTAATAATTTTTAATA
Found at i:45120867 original size:41 final size:41
Alignment explanation
Indices: 45120810--45120892 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
45120800 GTATTCATAA
45120810 TGATTAATTTTATTCAAACGGTTGTTACTTCAAATATATAT
1 TGATTAATTTTATTCAAACGGTTGTTACTTCAAATATATAT
* *
45120851 TGATTACTTTTATTCAAATGGTTGTTACTTCAAATATATAT
1 TGATTAATTTTATTCAAACGGTTGTTACTTCAAATATATAT
45120892 T
1 T
45120893 CTTCAAAACC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (41 bp):
TGATTAATTTTATTCAAACGGTTGTTACTTCAAATATATAT
Found at i:45132481 original size:14 final size:14
Alignment explanation
Indices: 45132462--45132489 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45132452 TTTTGATAGA
45132462 TTGGTTGTAACTAG
1 TTGGTTGTAACTAG
45132476 TTGGTTGTAACTAG
1 TTGGTTGTAACTAG
45132490 CCATTGGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.29, T:0.43
Consensus pattern (14 bp):
TTGGTTGTAACTAG
Found at i:45135090 original size:14 final size:14
Alignment explanation
Indices: 45135071--45135107 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
45135061 TGGTTTTGGA
45135071 TTCTAATTTTAAGT
1 TTCTAATTTTAAGT
45135085 TTCTAATTTTAAGT
1 TTCTAATTTTAAGT
45135099 TTCTAATTT
1 TTCTAATTT
45135108 GCACTCAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.05, T:0.59
Consensus pattern (14 bp):
TTCTAATTTTAAGT
Found at i:45147665 original size:21 final size:22
Alignment explanation
Indices: 45147639--45147679 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
45147629 TTAAAAAATA
45147639 AACTAATTAACTGA-GTTTACT
1 AACTAATTAACTGATGTTTACT
*
45147660 AACTAATTAAGTGATGTTTA
1 AACTAATTAACTGATGTTTA
45147680 ACAAACATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (22 bp):
AACTAATTAACTGATGTTTACT
Found at i:45156689 original size:37 final size:37
Alignment explanation
Indices: 45156639--45156730 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 37
45156629 TGGAAGATAT
* * * * *
45156639 TTGAAAGGTCATGTCTCTTCACTTGTTTCGTGTGTAG
1 TTGAAAAGTCATGTCTCTTCACTTGGTCCATATGTAG
*
45156676 TTGAAAAGTCATGTCTCTTCACTTGGTCCATATGTAT
1 TTGAAAAGTCATGTCTCTTCACTTGGTCCATATGTAG
*
45156713 TTGAATAGTCATGTCTCT
1 TTGAAAAGTCATGTCTCT
45156731 ATACTTGATG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (37 bp):
TTGAAAAGTCATGTCTCTTCACTTGGTCCATATGTAG
Found at i:45157177 original size:49 final size:50
Alignment explanation
Indices: 45157091--45157236 Score: 154
Period size: 49 Copynumber: 3.0 Consensus size: 50
45157081 ATACTTAACA
* * *
45157091 TAATTAACATGTAAAATGC-ATAAATGCATGACTTAATTAAAATGCAAACT
1 TAATTAACATATGAGATGCTAT-AATGCATGACTTAATTAAAATGCAAACT
* * * * **
45157141 TATTTAACATATGAGTTTC-ATAATGCATGACATAATTAAAACACAAACT
1 TAATTAACATATGAGATGCTATAATGCATGACTTAATTAAAATGCAAACT
* * *
45157190 TAATTAATATATGAGATGCTTTTATGCATGACTTAATT-AAATGCAAA
1 TAATTAACATATGAGATGCTATAATGCATGACTTAATTAAAATGCAAA
45157237 ACACATAATG
Statistics
Matches: 77, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
49 47 0.61
50 30 0.39
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.34
Consensus pattern (50 bp):
TAATTAACATATGAGATGCTATAATGCATGACTTAATTAAAATGCAAACT
Found at i:45161003 original size:3 final size:3
Alignment explanation
Indices: 45160995--45161019 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
45160985 CCTTTTTTAA
45160995 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
45161020 TCTAGGACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45161985 original size:17 final size:17
Alignment explanation
Indices: 45161960--45162009 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
45161950 ATAGAAAGTC
*
45161960 AAAGATATGGATATCAG
1 AAAGATATGGGTATCAG
*
45161977 AAAGTTATGGGTATCAG
1 AAAGATATGGGTATCAG
45161994 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
45162010 AAATATGAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:45165564 original size:17 final size:17
Alignment explanation
Indices: 45165542--45165574 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
45165532 ATAGAAAGTC
45165542 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
45165559 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
45165575 AAATATAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:45167648 original size:17 final size:17
Alignment explanation
Indices: 45167613--45167648 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
45167603 AATAAGATTA
**
45167613 TAAAATTTTAAAAGGAT
1 TAAAATTTTAAAAAAAT
45167630 TAAAATTTTAAAAAAAT
1 TAAAATTTTAAAAAAAT
45167647 TA
1 TA
45167649 TGGTAAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
TAAAATTTTAAAAAAAT
Found at i:45177099 original size:35 final size:35
Alignment explanation
Indices: 45177060--45177132 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
45177050 TGCGCATACT
*
45177060 TTTGTTGCAACATAGAACCTGAATTTGTGCATGTA
1 TTTGTTGCAACATAGAACCTGAACTTGTGCATGTA
45177095 TTTGTTGCAACATAGAACCTGAACTTGTGCATGTA
1 TTTGTTGCAACATAGAACCTGAACTTGTGCATGTA
45177130 TTT
1 TTT
45177133 TGTGAAGTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (35 bp):
TTTGTTGCAACATAGAACCTGAACTTGTGCATGTA
Found at i:45179845 original size:16 final size:16
Alignment explanation
Indices: 45179824--45179875 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
45179814 TTTGGTTCGC
*
45179824 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
45179840 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
45179856 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
45179872 TGTA
1 TGTA
45179876 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:45180132 original size:18 final size:17
Alignment explanation
Indices: 45180111--45180145 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45180101 TTATTATTAA
*
45180111 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
45180129 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
45180146 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:45180252 original size:18 final size:17
Alignment explanation
Indices: 45180231--45180265 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45180221 ATATTATTAA
*
45180231 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
45180249 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
45180266 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:45180394 original size:26 final size:27
Alignment explanation
Indices: 45180319--45180400 Score: 87
Period size: 26 Copynumber: 3.0 Consensus size: 27
45180309 ATATGATACT
* *
45180319 ATAATTAATATTAAATATATTTTAATTA
1 ATAATTATTATTAAATATAATTTAA-TA
* *
45180347 A-AATATATGATTAAATACAATTTAA-A
1 ATAAT-TATTATTAAATATAATTTAATA
*
45180373 ATAATTATTATTAAATATAATTTCATA
1 ATAATTATTATTAAATATAATTTAATA
45180400 A
1 A
45180401 ATGTTCTTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
26 19 0.43
27 8 0.18
28 17 0.39
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (27 bp):
ATAATTATTATTAAATATAATTTAATA
Found at i:45183496 original size:33 final size:33
Alignment explanation
Indices: 45183457--45183566 Score: 136
Period size: 33 Copynumber: 3.3 Consensus size: 33
45183447 ATTATAAAGC
45183457 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
45183490 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
45183523 AATGT-T-ATTTACCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTGA-CCTAAAATTA-ATTGTTGGTGT
45183556 ATGTATAATTG
1 ATGTATAATTG
45183567 TTGGTTTAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
32 9 0.14
33 49 0.75
34 7 0.11
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:45183589 original size:51 final size:51
Alignment explanation
Indices: 45183513--45183666 Score: 308
Period size: 51 Copynumber: 3.0 Consensus size: 51
45183503 CTAAAATTAC
45183513 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
45183564 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
45183615 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
45183666 T
1 T
45183667 CTTTTAATTT
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 103 1.00
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (51 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
Found at i:45184844 original size:18 final size:17
Alignment explanation
Indices: 45184817--45184851 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
45184807 AGACTAAAAT
45184817 AACATTTCATCTTCTAC
1 AACATTTCATCTTCTAC
45184834 AACAGTTTCATCTTCTAC
1 AACA-TTTCATCTTCTAC
45184852 TCACTAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.40
Consensus pattern (17 bp):
AACATTTCATCTTCTAC
Found at i:45186355 original size:21 final size:23
Alignment explanation
Indices: 45186320--45186365 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
45186310 AACATAGACT
45186320 AACTGATGACGCAAATCGGCAGA
1 AACTGATGACGCAAATCGGCAGA
*
45186343 AACTG-TGA-GCAAATCGGCCGA
1 AACTGATGACGCAAATCGGCAGA
45186364 AA
1 AA
45186366 TAGAAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.64
22 3 0.14
23 5 0.23
ACGTcount: A:0.39, C:0.22, G:0.26, T:0.13
Consensus pattern (23 bp):
AACTGATGACGCAAATCGGCAGA
Found at i:45190325 original size:5 final size:6
Alignment explanation
Indices: 45190305--45190334 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
45190295 TTCCTACTAG
45190305 TTTCTTT TTTCTT TTTCTT TTTCTT TTTCT
1 TTTC-TT TTTCTT TTTCTT TTTCTT TTTCT
45190335 CTCTTCTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTCTT
Found at i:45191206 original size:17 final size:18
Alignment explanation
Indices: 45191184--45191218 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
45191174 ATTCTAGGCT
45191184 GTGTGGGCC-ACATGGGC
1 GTGTGGGCCTACATGGGC
45191201 GTGTGGGCCTACATGGGC
1 GTGTGGGCCTACATGGGC
45191219 CGAAAACATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.23, G:0.46, T:0.20
Consensus pattern (18 bp):
GTGTGGGCCTACATGGGC
Found at i:45192793 original size:28 final size:28
Alignment explanation
Indices: 45192729--45192793 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
45192719 TTATCGAGCT
*
45192729 TTGTCTCTACTGAGACCATTGTTACTAA
1 TTGTCTCTACGGAGACCATTGTTACTAA
* *
45192757 TTTTCTCTACGGAGACCATTGTTACTGA
1 TTGTCTCTACGGAGACCATTGTTACTAA
*
45192785 TTGTATCTA
1 TTGTCTCTA
45192794 TAGAGACCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (28 bp):
TTGTCTCTACGGAGACCATTGTTACTAA
Found at i:45192799 original size:28 final size:28
Alignment explanation
Indices: 45192729--45192801 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
45192719 TTATCGAGCT
* *
45192729 TTGTCTCTACTGAGACCATTGTTACTAA
1 TTGTATCTACAGAGACCATTGTTACTAA
* * * *
45192757 TTTTCTCTACGGAGACCATTGTTACTGA
1 TTGTATCTACAGAGACCATTGTTACTAA
*
45192785 TTGTATCTATAGAGACC
1 TTGTATCTACAGAGACC
45192802 TTGGTGTGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (28 bp):
TTGTATCTACAGAGACCATTGTTACTAA
Found at i:45194033 original size:17 final size:17
Alignment explanation
Indices: 45194011--45194078 Score: 66
Period size: 17 Copynumber: 4.0 Consensus size: 17
45194001 TAAGTTGTGC
*
45194011 TTATATGCTAACTATGT
1 TTATATGCGAACTATGT
* *
45194028 TTATATGAGAGCTATGT
1 TTATATGCGAACTATGT
* * *
45194045 TTATATG-TAAGTTGTGT
1 TTATATGCGAA-CTATGT
45194062 TTATATGCGAACTATGT
1 TTATATGCGAACTATGT
45194079 CAATTTGTGG
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
16 1 0.03
17 36 0.92
18 2 0.05
ACGTcount: A:0.28, C:0.07, G:0.19, T:0.46
Consensus pattern (17 bp):
TTATATGCGAACTATGT
Found at i:45194678 original size:237 final size:237
Alignment explanation
Indices: 45194260--45194722 Score: 719
Period size: 237 Copynumber: 2.0 Consensus size: 237
45194250 ACTGACTTTG
* * * * *
45194260 TAGGGTGTGTATGTGCGAACTCTCTGTAAAGTATCTAAGTGCGAGCTGGTTTGTAAAGTAATAGT
1 TAGGGTGTGTATATGCAAACCCTCTGTAAAGTATCTAAATGCGAGCTGGTTTGTAAAGTAATAGG
* * *
45194325 ATGTGTGTTGTAAAAATCTGTGAGTTGTATTGATGTGCGAATTATGTTAATACGCGAGCTACGTC
66 ATGTGTGTTGTAAAAATCTGTGAGTTGTATTGACGTGCGAATTATGTCAATACACGAGCTACGTC
** ** * *
45194390 AACATGAGTGTTATAGTAATGGTGCAAGTTGAACTGTTGTTGTAACCTATAGCTTAGGTCCGGCT
131 AACATGAGTGTTATAGTAAAAGTGCAAGTTGAACTGTTGCAGTAACCTATAGCTTAGGTCCAGCG
* *
45194455 ACCAGATTGGGCGAGGGGTGTTACATAATGGATTGAACTCTA
196 ACCAGATTAGACGAGGGGTGTTACATAATGGATTGAACTCTA
45194497 TAGGGTGTGTATATGCAAACCCTCTGTAAAGTATCTAAATGCGAGCTGGTTTGTAAAGTAATAGG
1 TAGGGTGTGTATATGCAAACCCTCTGTAAAGTATCTAAATGCGAGCTGGTTTGTAAAGTAATAGG
*
45194562 ATGTGTGTTGTAAAAATCTGTGAGTTGTATTGACGTGCGAATTATGTCAATACACGAGCTGCGTC
66 ATGTGTGTTGTAAAAATCTGTGAGTTGTATTGACGTGCGAATTATGTCAATACACGAGCTACGTC
* * * *
45194627 AACATGAGTGTTGTAGTAAAAGTGCAAGTTGGACTGTTGCAGTATCCTATAGCTTAGGTCCATCG
131 AACATGAGTGTTATAGTAAAAGTGCAAGTTGAACTGTTGCAGTAACCTATAGCTTAGGTCCAGCG
* *
45194692 ACCGGATTAGACGATGGGTGTTACATAATGG
196 ACCAGATTAGACGAGGGGTGTTACATAATGG
45194723 GTCGGATCAA
Statistics
Matches: 203, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
237 203 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.32
Consensus pattern (237 bp):
TAGGGTGTGTATATGCAAACCCTCTGTAAAGTATCTAAATGCGAGCTGGTTTGTAAAGTAATAGG
ATGTGTGTTGTAAAAATCTGTGAGTTGTATTGACGTGCGAATTATGTCAATACACGAGCTACGTC
AACATGAGTGTTATAGTAAAAGTGCAAGTTGAACTGTTGCAGTAACCTATAGCTTAGGTCCAGCG
ACCAGATTAGACGAGGGGTGTTACATAATGGATTGAACTCTA
Found at i:45205292 original size:22 final size:23
Alignment explanation
Indices: 45205267--45205312 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
45205257 AAATAATTTT
*
45205267 AATAATTTTT-TTATTTTTTAAA
1 AATAATTTTTATAATTTTTTAAA
45205289 AATAATTTTTATAATTTTTTAAA
1 AATAATTTTTATAATTTTTTAAA
45205312 A
1 A
45205313 TTTTAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
AATAATTTTTATAATTTTTTAAA
Found at i:45205294 original size:31 final size:31
Alignment explanation
Indices: 45205245--45205322 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
45205235 AAAAATATTC
*
45205245 TTTTATGTTTT-AAAATAATTTTAATAATTT
1 TTTTATATTTTAAAAATAATTTTAATAATTT
* *
45205275 TTTTATTTTTTAAAAATAATTTTTATAATTT
1 TTTTATATTTTAAAAATAATTTTAATAATTT
* *
45205306 TTTAAAATTTTAAAAAT
1 TTTTATATTTTAAAAAT
45205323 TCAAAAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
30 10 0.24
31 32 0.76
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (31 bp):
TTTTATATTTTAAAAATAATTTTAATAATTT
Found at i:45208095 original size:19 final size:19
Alignment explanation
Indices: 45208071--45208127 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 19
45208061 TTTTTTTCCT
45208071 AAATTTTAAATATATAAAA
1 AAATTTTAAATATATAAAA
*
45208090 AAATTTTAAAAATATTTTAAAA
1 AAATTTT--AAATA-TATAAAA
* *
45208112 ATATTTAAAATATATA
1 AAATTTTAAATATATA
45208128 TAAATGCTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
19 10 0.32
20 5 0.16
21 5 0.16
22 11 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AAATTTTAAATATATAAAA
Found at i:45208101 original size:11 final size:11
Alignment explanation
Indices: 45208085--45208126 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
45208075 TTTAAATATA
*
45208085 TAAAAAAATTT
1 TAAAAATATTT
45208096 TAAAAATATTT
1 TAAAAATATTT
45208107 TAAAAATA-TT
1 TAAAAATATTT
45208117 TAAAATATAT
1 TAAAA-ATAT
45208127 ATAAATGCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 7 0.25
11 21 0.75
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
TAAAAATATTT
Found at i:45208123 original size:9 final size:10
Alignment explanation
Indices: 45208078--45208131 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 10
45208068 CCTAAATTTT
*
45208078 AAATATATAA
1 AAATATTTAA
*
45208088 AAAAATTTTAA
1 AAATA-TTTAA
45208099 AAATATTTTAA
1 AAATA-TTTAA
45208110 AAATATTTAA
1 AAATATTTAA
*
45208120 AATATATATAA
1 AA-ATATTTAA
45208131 A
1 A
45208132 TGCTAAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
10 11 0.29
11 27 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
AAATATTTAA
Found at i:45210134 original size:30 final size:30
Alignment explanation
Indices: 45210090--45210149 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
45210080 ATTTAACAAG
45210090 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
45210120 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
45210150 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:45213861 original size:4 final size:4
Alignment explanation
Indices: 45213852--45213877 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
45213842 TGTAAAATCC
45213852 CTTT CTTT CTTT CTTT CTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT CTTT CT
45213878 ATGATGTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
CTTT
Found at i:45216156 original size:28 final size:28
Alignment explanation
Indices: 45216124--45216180 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
45216114 TAGAAAACCA
45216124 GTAATGAAAGGAAGAACAATAGAATGAT
1 GTAATGAAAGGAAGAACAATAGAATGAT
*
45216152 GTAATGAAATGAAGAACAATAGAATGAT
1 GTAATGAAAGGAAGAACAATAGAATGAT
45216180 G
1 G
45216181 GGGTGCTGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.53, C:0.04, G:0.25, T:0.19
Consensus pattern (28 bp):
GTAATGAAAGGAAGAACAATAGAATGAT
Found at i:45218936 original size:45 final size:44
Alignment explanation
Indices: 45218867--45219066 Score: 136
Period size: 45 Copynumber: 4.5 Consensus size: 44
45218857 TACACGGTGG
* * * *
45218867 ATCAGCACACAGC-ACCACCCTTATAGTCAATAGCACTCGGTGAA
1 ATCAGCACATAGCAACCACCTTTATAATCAATAGTA-TCGGTGAA
* *
45218911 ATCAGCACATAGCAACCACCTTTATACTCAATGGTA-CAGGGTGAA
1 ATCAGCACATAGCAACCACCTTTATAATCAATAGTATC--GGTGAA
* * * * * * *
45218956 TTTAGCACATAGCAATCA-CTTATATAACCATTGGTATCAAGTGAA
1 ATCAGCACATAGCAACCACCTT-TATAATCAATAGTATC-GGTGAA
* * ** * * *
45219001 ATCAACACATAGCAATCACCTTTATTTTCATTAATATCCGGTGGA
1 ATCAGCACATAGCAACCACCTTTATAATCAATAGTAT-CGGTGAA
*
45219046 ATCAGCACATAGCATCCACCT
1 ATCAGCACATAGCAACCACCT
45219067 ATATTTCCAA
Statistics
Matches: 123, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
43 1 0.01
44 15 0.12
45 102 0.83
46 5 0.04
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (44 bp):
ATCAGCACATAGCAACCACCTTTATAATCAATAGTATCGGTGAA
Found at i:45223031 original size:50 final size:51
Alignment explanation
Indices: 45222956--45223086 Score: 198
Period size: 50 Copynumber: 2.6 Consensus size: 51
45222946 CCCCGTGACA
* * *
45222956 CCATGTCCCAGACATGATCTTACACTGA-CTCTCCTCTGT-TCGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAGCACTCCTCGGTCT-GTGCCGATG
45223006 CCATGTCCCAGACATGGTCTTACACT-AGCACTCCTCGGTCTGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAGCACTCCTCGGTCTGTGCCGATG
45223056 CCATGTCCCAGACATGGTCTTACACTG-GCAC
1 CCATGTCCCAGACATGGTCTTACACTGAGCAC
45223087 ACTCACTGCC
Statistics
Matches: 75, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
49 1 0.01
50 73 0.97
51 1 0.01
ACGTcount: A:0.19, C:0.34, G:0.20, T:0.27
Consensus pattern (51 bp):
CCATGTCCCAGACATGGTCTTACACTGAGCACTCCTCGGTCTGTGCCGATG
Found at i:45229089 original size:35 final size:34
Alignment explanation
Indices: 45229043--45229111 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 34
45229033 CAACAATGGT
*
45229043 GCTTTATAAGAGAGCTTTCGTGCTTTGTAGGGAA
1 GCTTTATAAGAGAGCTTTCGTGCTTAGTAGGGAA
45229077 NGCTTTATAAGAGAGCTTTCGTGCTTAGTAGGGAA
1 -GCTTTATAAGAGAGCTTTCGTGCTTAGTAGGGAA
45229112 ATGTCTTTGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (34 bp):
GCTTTATAAGAGAGCTTTCGTGCTTAGTAGGGAA
Found at i:45229968 original size:30 final size:31
Alignment explanation
Indices: 45229928--45229996 Score: 104
Period size: 31 Copynumber: 2.3 Consensus size: 31
45229918 AACTTAGCAA
* * *
45229928 TCAATTACTTAAAT-AAAACTGTTAAATAGT
1 TCAATGACTTAAATAAAAACTCTCAAATAGT
45229958 TCAATGACTTAAATAAAAACTCTCAAATAGT
1 TCAATGACTTAAATAAAAACTCTCAAATAGT
45229989 TCAATGAC
1 TCAATGAC
45229997 CATTTGTAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 13 0.37
31 22 0.63
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.32
Consensus pattern (31 bp):
TCAATGACTTAAATAAAAACTCTCAAATAGT
Found at i:45234694 original size:2 final size:2
Alignment explanation
Indices: 45234687--45234727 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
45234677 ACATTTTTGT
45234687 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
45234728 TTTAGTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:45240020 original size:108 final size:108
Alignment explanation
Indices: 45239749--45240085 Score: 489
Period size: 108 Copynumber: 3.1 Consensus size: 108
45239739 TCCAAAAAAG
*
45239749 AAAAAAAATTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAATGA-ACAGTAAAAAAAAATTTTC
1 AAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAAT-ACACAGT-AAAAAAAA-TTT-
* * *
45239813 TTTTTTTTTTTCGTGTCAGAATGAGATATAAAAATACG-AAAAAATAA
62 TTCTTTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAAT-A
* *
45239860 ATAAAAAAATTTTCTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTGCACAGTAAAAAAAATTT
1 A-AAAAAAA--TT-TGGGTGCTGGCCTGTCAATGGCCGGCACCCAATACACAGTAAAAAAAATTT
45239925 TTCTTTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAATA
62 TTCTTTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAATA
* * *
45239972 AAAAAAAATTTAGGTGCTGGCCTGTCAATGGTCGGCACCCAATACACAGTAAAAAAAAGTTTTCT
1 AAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAATACACAGTAAAAAAAATTTTTCT
*
45240037 TTTTTTTCGTGTTAGAATCAAATATAAAAATACGAAAAAAATA
66 TTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAATA
45240080 AAAAAA
1 AAAAAA
45240086 TTTCTATTTC
Statistics
Matches: 208, Mismatches: 12, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
108 98 0.47
109 2 0.01
111 8 0.04
112 44 0.21
113 10 0.05
114 10 0.05
115 36 0.17
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.29
Consensus pattern (108 bp):
AAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAATACACAGTAAAAAAAATTTTTCT
TTTTTTTCGTGTCAGAATCAAATATAAAAATACGAAAAAAATA
Found at i:45240575 original size:107 final size:106
Alignment explanation
Indices: 45240388--45240912 Score: 594
Period size: 107 Copynumber: 5.0 Consensus size: 106
45240378 GAAATAGAAA
* * ****
45240388 TTTTTTTATTTTTTTCGTATTTTTATATTTGATTCTAACACGAAAAAAAAGAAAACTTTTTTTTA
1 TTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAA-AAAA-AAAATTTTA
* * *
45240453 CTGTGT-ATTGGGTGCCGACCATTGACAGGCCAGCACCTAAATT
64 CTGT-TCACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAT
*
45240496 TTTTTTTATTTTTTTCGTATTTTTATATCTGATTTTGACACGAAAAAAAGAAAAAAAAATTTTAC
1 TTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAA-AAAAAAAAATTTTAC
*
45240561 TGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAT
65 TGTTCACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAT
* * ***
45240603 TTTTTTTATTTTTTTCGTATTTTTATATCTTGATTTTGACAC--AAAAAAAAGAAATTTTTTTAC
1 TTTTTTTATTTTTTTCGTATTTTTATATC-TGATTCTGACACGAAAAAAAAAAAAAAAATTTTAC
*
45240666 TGTTCACTGGGTGCC-AGCAATTGACAGGCCAGCACCCAAAA-
65 TGTTCACTGGGTGCCGA-CCATTGACAGGCCAGCACCCAAAAT
*** * *
45240707 -AAATGTATTTTTTTCGTATTTTTATATCTAATTCTGACACGAAAAAAAAAAGAAAAAAGTTTTT
1 TTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAA-AAAAAA----TT
* * *
45240771 TTACTATTCACTGGGTGCCGGCCATTGACAGGCCAGTACCCAAAAT
61 TTACTGTTCACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAT
* *
45240817 TTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTAACACG--------AAAAAAAA-TTTATT
1 TTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAAAAAAAATTTTACT
*
45240873 GTTCACTGGGTGCCGACCATTGACAGGCTAGCACCCAAAA
66 GTTCACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAA
45240913 AAAAATTTTC
Statistics
Matches: 361, Mismatches: 42, Indels: 39
0.82 0.10 0.09
Matches are distributed among these distances:
97 41 0.11
102 16 0.04
103 26 0.07
104 8 0.02
105 52 0.14
106 7 0.02
107 71 0.20
108 62 0.17
109 43 0.12
111 35 0.10
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (106 bp):
TTTTTTTATTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAAAAAAAATTTTACT
GTTCACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAT
Found at i:45240796 original size:214 final size:209
Alignment explanation
Indices: 45240388--45240915 Score: 691
Period size: 214 Copynumber: 2.5 Consensus size: 209
45240378 GAAATAGAAA
45240388 TTTTTTTATTTTTTTCGTATTTTTATAT-TTGATTCTAACACGAAAAAAAAGAAAACTTTTTTTT
1 TTTTTTTATTTTTTTCGTATTTTTATATCTTGATTCT-ACAC-AAAAAAAAG-AAA--TTTTTTT
* * **** *
45240452 ACTGTGT-ATTGGGTGCCGACCATTGACAGGCCAGCACCTAAATTTTTTTTTATTTTTTTCGTAT
61 ACTGT-TCACTGGGTGCCGACCATTGACAGGCCAGCACCCAAA--AAAATGTATTTTTTTCGTAT
* * *
45240516 TTTTATATCTGATTTTGACACGAAAAAAAGAAAAAAAAATTTTACTGTTCACTGGGTGCCGGCCA
123 TTTTATATCTAATTCTGACACGAAAAAAAGAAAAAAAAATTTTACTATTCACTGGGTGCCGGCCA
45240581 TTGACAGGCCAGCACCCAAAAT
188 TTGACAGGCCAGCACCCAAAAT
*
45240603 TTTTTTTATTTTTTTCGTATTTTTATATCTTGATTTTGACACAAAAAAAAGAAATTTTTTTACTG
1 TTTTTTTATTTTTTTCGTATTTTTATATCTTGATTCT-ACACAAAAAAAAGAAATTTTTTTACTG
*
45240668 TTCACTGGGTGCC-AGCAATTGACAGGCCAGCACCCAAAAAAATGTATTTTTTTCGTATTTTTAT
65 TTCACTGGGTGCCGA-CCATTGACAGGCCAGCACCCAAAAAAATGTATTTTTTTCGTATTTTTAT
45240732 ATCTAATTCTGACACGAAAAAAA-AAAGAAAAAAGTTTTTTTACTATTCACTGGGTGCCGGCCAT
129 ATCTAATTCTGACACGAAAAAAAGAAA-AAAAAA----TTTTACTATTCACTGGGTGCCGGCCAT
*
45240796 TGACAGGCCAGTACCCAAAAT
189 TGACAGGCCAGCACCCAAAAT
** *
45240817 TTTTTTTATTTTTTTCGTATTTTTATATC-TGATTCTA-ACACGAAAAA-AAA----TTTATTGT
1 TTTTTTTATTTTTTTCGTATTTTTATATCTTGATTCTACACAAAAAAAAGAAATTTTTTTACTGT
*
45240875 TCACTGGGTGCCGACCATTGACAGGCTAGCACCCAAAAAAA
66 TCACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAAAA
45240916 AATTTTCTTC
Statistics
Matches: 284, Mismatches: 20, Indels: 27
0.86 0.06 0.08
Matches are distributed among these distances:
206 44 0.15
207 1 0.00
209 3 0.01
210 51 0.18
211 10 0.04
212 43 0.15
213 6 0.02
214 78 0.27
215 37 0.13
216 11 0.04
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.38
Consensus pattern (209 bp):
TTTTTTTATTTTTTTCGTATTTTTATATCTTGATTCTACACAAAAAAAAGAAATTTTTTTACTGT
TCACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAAAATGTATTTTTTTCGTATTTTTATAT
CTAATTCTGACACGAAAAAAAGAAAAAAAAATTTTACTATTCACTGGGTGCCGGCCATTGACAGG
CCAGCACCCAAAAT
Found at i:45250001 original size:18 final size:18
Alignment explanation
Indices: 45249978--45250015 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
45249968 TGTATCAATG
45249978 CCCCAAGGGTTAACCCCA
1 CCCCAAGGGTTAACCCCA
45249996 CCCCAAGGGTTAACCCCA
1 CCCCAAGGGTTAACCCCA
45250014 CC
1 CC
45250016 ATTCACTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.16, T:0.11
Consensus pattern (18 bp):
CCCCAAGGGTTAACCCCA
Found at i:45251882 original size:19 final size:19
Alignment explanation
Indices: 45251858--45251895 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
45251848 CAATGGAAGG
*
45251858 AATTTTTGTACTTTAATTT
1 AATTTTTATACTTTAATTT
*
45251877 AATTTTTATATTTTAATTT
1 AATTTTTATACTTTAATTT
45251896 TATTAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (19 bp):
AATTTTTATACTTTAATTT
Found at i:45251918 original size:23 final size:22
Alignment explanation
Indices: 45251875--45251935 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 22
45251865 GTACTTTAAT
*
45251875 TTAATTTTTATAT-TTTAATTTTA
1 TTAA-TTTTAT-TCTTTAATTTCA
*
45251898 TTAATTTTATTCTTTATATTTCC
1 TTAATTTTATTCTTTA-ATTTCA
45251921 TTAAATTTTATTCTT
1 TT-AATTTTATTCTT
45251936 ATCTAAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
21 1 0.03
22 10 0.30
23 10 0.30
24 12 0.36
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (22 bp):
TTAATTTTATTCTTTAATTTCA
Found at i:45252838 original size:3 final size:3
Alignment explanation
Indices: 45252792--45252820 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
45252782 ATTGAGGATT
45252792 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
45252821 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:45252840 original size:9 final size:9
Alignment explanation
Indices: 45252795--45252840 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
45252785 GAGGATTATA
*
45252795 ATAATAATA
1 ATAATAATT
*
45252804 ATAATAATA
1 ATAATAATT
45252813 ATAATAATT
1 ATAATAATT
* *
45252822 ATTATTATT
1 ATAATAATT
45252831 ATAATAATT
1 ATAATAATT
45252840 A
1 A
45252841 AGAAGTAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
ATAATAATT
Found at i:45253228 original size:11 final size:11
Alignment explanation
Indices: 45253214--45253255 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
45253204 TAAATATTAC
45253214 TTTATTAATAT
1 TTTATTAATAT
*
45253225 TTTAATGAGATAT
1 TTT-ATTA-ATAT
45253238 TTTATTAATAT
1 TTTATTAATAT
45253249 TTTATTA
1 TTTATTA
45253256 TAAATAACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 14 0.52
12 6 0.22
13 7 0.26
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TTTATTAATAT
Found at i:45257803 original size:33 final size:33
Alignment explanation
Indices: 45257766--45257870 Score: 99
Period size: 33 Copynumber: 3.2 Consensus size: 33
45257756 AGATGGAAAA
*
45257766 ATTTGAGGTTGATCAAGAAGCAAAG-AGAAGAAT
1 ATTTGAGGTTGATCAAGAAG-AAAGAAGAAGAAG
* * * * *
45257799 ATTTGAGGCTAACCGAGAAGAAGGAAGAAGAAG
1 ATTTGAGGTTGATCAAGAAGAAAGAAGAAGAAG
45257832 ATTTGA-GTCTGATCAAGAA-AAAGAAAGAAGAAG
1 ATTTGAGGT-TGATCAAGAAGAAAG-AAGAAGAAG
*
45257865 GTTTGA
1 ATTTGA
45257871 ACCTGACCGA
Statistics
Matches: 57, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
32 7 0.12
33 50 0.88
ACGTcount: A:0.46, C:0.07, G:0.29, T:0.19
Consensus pattern (33 bp):
ATTTGAGGTTGATCAAGAAGAAAGAAGAAGAAG
Found at i:45257889 original size:33 final size:33
Alignment explanation
Indices: 45257791--45257889 Score: 99
Period size: 33 Copynumber: 3.0 Consensus size: 33
45257781 AGAAGCAAAG
* ** * *
45257791 AGAAGAATATTTGAGGCTAACCGAGAAGAAGGA
1 AGAAGAAGATTTGAACCTGACCGAGAAGAAGAA
** * * *
45257824 AGAAGAAGATTTGAGTCTGATCAAGAAAAAGAA
1 AGAAGAAGATTTGAACCTGACCGAGAAGAAGAA
*
45257857 AGAAGAAGGTTTGAACCTGACCGAGAAGAAGAA
1 AGAAGAAGATTTGAACCTGACCGAGAAGAAGAA
45257890 CAAATAAGAT
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.15
Consensus pattern (33 bp):
AGAAGAAGATTTGAACCTGACCGAGAAGAAGAA
Found at i:45265438 original size:14 final size:14
Alignment explanation
Indices: 45265396--45265438 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
45265386 TTTTGCCCTC
45265396 TTTGTCTATTTTCTT
1 TTTGT-TATTTTCTT
* *
45265411 TTTGTTACTCTCTT
1 TTTGTTATTTTCTT
*
45265425 TTTGTTTTTTTCTT
1 TTTGTTATTTTCTT
45265439 CGTTTTGCTG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.05, C:0.14, G:0.07, T:0.74
Consensus pattern (14 bp):
TTTGTTATTTTCTT
Found at i:45279391 original size:9 final size:9
Alignment explanation
Indices: 45279374--45279415 Score: 52
Period size: 10 Copynumber: 4.7 Consensus size: 9
45279364 ATTTTATGTT
45279374 TTTTAAATAA
1 TTTT-AATAA
45279384 TTTTAATAA
1 TTTTAATAA
45279393 TTTTTAATAA
1 -TTTTAATAA
45279403 TTTT--TAA
1 TTTTAATAA
45279410 TTTTAA
1 TTTTAA
45279416 AAAATTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.24
9 9 0.31
10 13 0.45
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTTAATAA
Found at i:45282480 original size:31 final size:30
Alignment explanation
Indices: 45282422--45282480 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
45282412 GTGTAATTTG
* * *
45282422 ATACATGAATTTTGATTTTGGTGCAATTAT
1 ATACATGAATTTTGATCTCGATGCAATTAT
*
45282452 ATACATGAAATTTTGATCTCGATTCAATT
1 ATACATG-AATTTTGATCTCGATGCAATT
45282481 GTACACATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 7 0.29
31 17 0.71
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (30 bp):
ATACATGAATTTTGATCTCGATGCAATTAT
Found at i:45288962 original size:61 final size:61
Alignment explanation
Indices: 45288867--45288988 Score: 226
Period size: 61 Copynumber: 2.0 Consensus size: 61
45288857 ATTTTTTGGA
45288867 GGGCACGGTAGAATGATAAAATGGTCTTTTAATCCTTTTTAAAATTAATAAAATTATAAAT
1 GGGCACGGTAGAATGATAAAATGGTCTTTTAATCCTTTTTAAAATTAATAAAATTATAAAT
* *
45288928 GGGCACGGTAGAATGATAAAATTGTCTTTTAATCCTTTTTGAAATTAATAAAATTATAAAT
1 GGGCACGGTAGAATGATAAAATGGTCTTTTAATCCTTTTTAAAATTAATAAAATTATAAAT
45288989 TAATATAATA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (61 bp):
GGGCACGGTAGAATGATAAAATGGTCTTTTAATCCTTTTTAAAATTAATAAAATTATAAAT
Found at i:45288988 original size:16 final size:16
Alignment explanation
Indices: 45288969--45289008 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
45288959 ATCCTTTTTG
*
45288969 AAATTAATAAAATTAT
1 AAATTAATAAAATAAT
*
45288985 AAATTAATATAATAAT
1 AAATTAATAAAATAAT
45289001 ATAATTAA
1 A-AATTAA
45289009 AATGTAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTAATAAAATAAT
Found at i:45292842 original size:89 final size:89
Alignment explanation
Indices: 45292691--45292870 Score: 297
Period size: 89 Copynumber: 2.0 Consensus size: 89
45292681 ATTTAAAATT
* * *
45292691 TAATACAATTATAAAATGATTTATTGATTCTATTTTTATATGGTGAAAAAACCATTAATGAATAT
1 TAATACAATTATAAAATGATTTATTGATTATATTTTTATATGGTAAAAAAAACATTAATGAATAT
*
45292756 ATGCGTTCTCAAAATAAATATAAA
66 ATGCGTTCTCAAAATAAATACAAA
*
45292780 TAATACAATTATAAAATGATTTATTGATTATATTTTTATATGGTAAAAAAAATATTAATGAATAT
1 TAATACAATTATAAAATGATTTATTGATTATATTTTTATATGGTAAAAAAAACATTAATGAATAT
* *
45292845 ATGCGTTCTTAAGATAAATACAAA
66 ATGCGTTCTCAAAATAAATACAAA
45292869 TA
1 TA
45292871 CAAGTATTAA
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.39
Consensus pattern (89 bp):
TAATACAATTATAAAATGATTTATTGATTATATTTTTATATGGTAAAAAAAACATTAATGAATAT
ATGCGTTCTCAAAATAAATACAAA
Found at i:45294142 original size:15 final size:15
Alignment explanation
Indices: 45294122--45294175 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
45294112 ATATTACAAA
45294122 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
45294137 ATATTTATAATTATAAT
1 ATATTTATTA-T-TAAT
*
45294154 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
45294171 ATATT
1 ATATT
45294176 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:45294161 original size:19 final size:19
Alignment explanation
Indices: 45294137--45294173 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
45294127 TATTATTAAT
*
45294137 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
45294156 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
45294174 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:45294181 original size:14 final size:15
Alignment explanation
Indices: 45294119--45294191 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 15
45294109 TTTATATTAC
*
45294119 AAAATATTTATTATT
1 AAAATATTTAATATT
* *
45294134 AATATATTTATAATTATA
1 AAAATA-TT-TAA-TATT
*
45294152 ATAAATATTTATTATT
1 A-AAATATTTAATATT
45294168 AAAATA-TTAATATT
1 AAAATATTTAATATT
*
45294182 -GAATATTTAA
1 AAAATATTTAA
45294192 AATTTTATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 11
0.70 0.12 0.17
Matches are distributed among these distances:
13 4 0.09
14 11 0.24
15 10 0.22
16 6 0.13
17 4 0.09
18 6 0.13
19 4 0.09
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (15 bp):
AAAATATTTAATATT
Found at i:45297134 original size:77 final size:77
Alignment explanation
Indices: 45297007--45297198 Score: 384
Period size: 77 Copynumber: 2.5 Consensus size: 77
45296997 GAAGGCTAGG
45297007 AATCATCTTTAAATTGAAGTACGAGTGGGGGAAAACAAACAATCAATACCATTTTTACCATAGGA
1 AATCATCTTTAAATTGAAGTACGAGTGGGGGAAAACAAACAATCAATACCATTTTTACCATAGGA
45297072 CTAGGAATTGCT
66 CTAGGAATTGCT
45297084 AATCATCTTTAAATTGAAGTACGAGTGGGGGAAAACAAACAATCAATACCATTTTTACCATAGGA
1 AATCATCTTTAAATTGAAGTACGAGTGGGGGAAAACAAACAATCAATACCATTTTTACCATAGGA
45297149 CTAGGAATTGCT
66 CTAGGAATTGCT
45297161 AATCATCTTTAAATTGAAGTACGAGTGGGGGAAAACAA
1 AATCATCTTTAAATTGAAGTACGAGTGGGGGAAAACAA
45297199 GGAGAAACTT
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 115 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (77 bp):
AATCATCTTTAAATTGAAGTACGAGTGGGGGAAAACAAACAATCAATACCATTTTTACCATAGGA
CTAGGAATTGCT
Found at i:45307332 original size:3 final size:3
Alignment explanation
Indices: 45307324--45307351 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
45307314 CACACACATA
45307324 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
45307352 CCTCTTCTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45315858 original size:16 final size:17
Alignment explanation
Indices: 45315819--45315869 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
45315809 AGCTTAATAT
45315819 TATTATATTATTAATAAA
1 TATT-TATTATTAATAAA
* *
45315837 TTTTTATTTTTAA-AAA
1 TATTTATTATTAATAAA
**
45315853 TATTTAAAATTAATAAA
1 TATTTATTATTAATAAA
45315870 ATAGTATAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
16 12 0.46
17 11 0.42
18 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTTATTATTAATAAA
Found at i:45318038 original size:29 final size:31
Alignment explanation
Indices: 45317996--45318072 Score: 104
Period size: 29 Copynumber: 2.5 Consensus size: 31
45317986 TTTACCTTAG
*
45317996 GTTACATTTTAGTCACTTATGTT-T-GAAAT
1 GTTACATTTTAGTCACTTACGTTATCGAAAT
* *
45318025 GTTACATTTTAGTCACTTACGTTATCGTATT
1 GTTACATTTTAGTCACTTACGTTATCGAAAT
*
45318056 GTAACATTTTAGTCACT
1 GTTACATTTTAGTCACT
45318073 GAGCCGTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
29 22 0.52
30 1 0.02
31 19 0.45
ACGTcount: A:0.26, C:0.14, G:0.13, T:0.47
Consensus pattern (31 bp):
GTTACATTTTAGTCACTTACGTTATCGAAAT
Found at i:45330907 original size:23 final size:23
Alignment explanation
Indices: 45330881--45330974 Score: 118
Period size: 23 Copynumber: 4.1 Consensus size: 23
45330871 CTGCATTTTT
*
45330881 GTGGTAGCTACGAATACATATCA
1 GTGGTAGCTACGACTACATATCA
* *
45330904 GTGGTAGCTTC-AGCTACATTTCA
1 GTGGTAGCTACGA-CTACATATCA
* *
45330927 GTGGTAGCTACGGCTACGTATCA
1 GTGGTAGCTACGACTACATATCA
*
45330950 GTGGTAGCTTCGACTACATATCA
1 GTGGTAGCTACGACTACATATCA
45330973 GT
1 GT
45330975 ATGGCACTTA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
22 1 0.02
23 58 0.98
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (23 bp):
GTGGTAGCTACGACTACATATCA
Found at i:45330907 original size:46 final size:46
Alignment explanation
Indices: 45330854--45330974 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 46
45330844 AGTGTTATTG
** * **
45330854 ATCAGTGGTAGCTTTGGCTGCATTTTTGTGGTAGCTACGAATACAT
1 ATCAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTACGAATACAT
** *
45330900 ATCAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTACGGCTACGT
1 ATCAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTACGAATACAT
*
45330946 ATCAGTGGTAGCTTC-GACTACATATCAGT
1 ATCAGTGGTAGCTTCAG-CTACATTTCAGT
45330975 ATGGCACTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
45 1 0.02
46 64 0.98
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCAGCTACATTTCAGTGGTAGCTACGAATACAT
Found at i:45332591 original size:49 final size:49
Alignment explanation
Indices: 45332504--45332647 Score: 182
Period size: 49 Copynumber: 2.9 Consensus size: 49
45332494 TGACAACTTG
* * * *
45332504 TGATATGTGATTTTCGTATAAGACCATTGCTAGG-CTATGGCATCGGTAAA
1 TGATATGTGA-TTTCGTGTAAGACCATAG-TTGGACTATGGCATCGATAAA
* **
45332554 TGATATGTGATTTCGTGTAAGATCATAGTTGGACTATGGCATCGATATG
1 TGATATGTGATTTCGTGTAAGACCATAGTTGGACTATGGCATCGATAAA
* *
45332603 TGTTATGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCGA
1 TGATATGTGATTTCGTGTAAGACCATAGTTGGACTATGGCATCGA
45332648 GAAAACGAAG
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
48 3 0.04
49 70 0.84
50 10 0.12
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (49 bp):
TGATATGTGATTTCGTGTAAGACCATAGTTGGACTATGGCATCGATAAA
Found at i:45333527 original size:3 final size:3
Alignment explanation
Indices: 45333519--45333559 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
45333509 TAATTTCATT
45333519 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
45333560 TACACTTTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:45336328 original size:24 final size:24
Alignment explanation
Indices: 45336301--45336350 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
45336291 ACCAGAGCCT
45336301 TAGCTGATCTAACAGTTTCTCCAA
1 TAGCTGATCTAACAGTTTCTCCAA
45336325 TAGCTGATCTAACAGTTTCTCCAA
1 TAGCTGATCTAACAGTTTCTCCAA
45336349 TA
1 TA
45336351 ATAACTGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (24 bp):
TAGCTGATCTAACAGTTTCTCCAA
Found at i:45339406 original size:28 final size:28
Alignment explanation
Indices: 45339369--45339428 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
45339359 TTTTGCTCTC
* *
45339369 TTTCACCCTTCATCTTCTTGATTTTTCT
1 TTTCACCCTTCACCTTCTGGATTTTTCT
*
45339397 TTTCACCCTTCGCCTTCTGGATTTTTCT
1 TTTCACCCTTCACCTTCTGGATTTTTCT
45339425 TTTC
1 TTTC
45339429 CCACTCTACC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.08, C:0.30, G:0.07, T:0.55
Consensus pattern (28 bp):
TTTCACCCTTCACCTTCTGGATTTTTCT
Found at i:45339930 original size:15 final size:15
Alignment explanation
Indices: 45339910--45339940 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
45339900 TATTGAGTCT
45339910 AGTTTCTCATAGAAG
1 AGTTTCTCATAGAAG
45339925 AGTTTCTCATAGAAG
1 AGTTTCTCATAGAAG
45339940 A
1 A
45339941 AATGATGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (15 bp):
AGTTTCTCATAGAAG
Found at i:45343241 original size:20 final size:20
Alignment explanation
Indices: 45343213--45343258 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
45343203 TATGCTAAGT
* *
45343213 AATGAAATGAAAATTAAATA
1 AATGGAATGAAAAGTAAATA
* *
45343233 AATGGAATGATAAGTAAGTA
1 AATGGAATGAAAAGTAAATA
45343253 AATGGA
1 AATGGA
45343259 GTGGTTCATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.24
Consensus pattern (20 bp):
AATGGAATGAAAAGTAAATA
Found at i:45349744 original size:18 final size:18
Alignment explanation
Indices: 45349714--45349752 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
45349704 ATTGTTGAAG
45349714 TTAAATCCCTAAGGGGTT
1 TTAAATCCCTAAGGGGTT
45349732 TTAAA-CCCTTAAGGGGTT
1 TTAAATCCC-TAAGGGGTT
45349750 TTA
1 TTA
45349753 TGGAAGAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (18 bp):
TTAAATCCCTAAGGGGTT
Found at i:45351906 original size:15 final size:16
Alignment explanation
Indices: 45351876--45351918 Score: 70
Period size: 15 Copynumber: 2.7 Consensus size: 16
45351866 TATTTTATGA
45351876 ATTATTTATTAATTTTT
1 ATTATTTA-TAATTTTT
45351893 ATTATTTA-AATTTTT
1 ATTATTTATAATTTTT
45351908 ATTATTTATAA
1 ATTATTTATAA
45351919 ATATTTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.60
16 2 0.08
17 8 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTATTTATAATTTTT
Found at i:45351919 original size:17 final size:17
Alignment explanation
Indices: 45351876--45351925 Score: 68
Period size: 15 Copynumber: 3.0 Consensus size: 17
45351866 TATTTTATGA
*
45351876 ATTATTTATTAATTTTT
1 ATTATTTATAAATTTTT
45351893 ATTA-TT-TAAATTTTT
1 ATTATTTATAAATTTTT
45351908 ATTATTTATAAATATTTT
1 ATTATTTATAAAT-TTTT
45351926 TGTATTAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 12 0.41
16 4 0.14
17 9 0.31
18 4 0.14
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
ATTATTTATAAATTTTT
Found at i:45353041 original size:15 final size:15
Alignment explanation
Indices: 45353021--45353050 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45353011 ACATATTTAA
45353021 TTATCTATATCTAAC
1 TTATCTATATCTAAC
*
45353036 TTATCTATATGTAAC
1 TTATCTATATCTAAC
45353051 CATATAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (15 bp):
TTATCTATATCTAAC
Found at i:45359002 original size:192 final size:192
Alignment explanation
Indices: 45358672--45359036 Score: 640
Period size: 192 Copynumber: 1.9 Consensus size: 192
45358662 GTTTATGCGA
* * *
45358672 GCTTAATGCTTTGCAAGTTGTTCTATGACGTGTTGTGGTACTGTGAGCTCTATTAAAATTTGTGA
1 GCTTAATGCTTTGCAAGCTATTCTATGACGTGTTGTGGTACTGTGAGCTCTATTAAAAATTGTGA
* *
45358737 GCCTAAAATGACGTGACCTGTAAATGTGTATTATTGTGATATGTTGGCATTGTGAATTTTTGGAA
66 GCCTAAAATGACGTGACCTGTAAATGTGTATTACTGCGATATGTTGGCATTGTGAATTTTTGGAA
* *
45358802 CTATTGGATATAGTTGGCATGCCATAGGATTATGAGTGCTCACCTATGTAATGTGATAGGGC
131 CCATTGGATATAGTTGGAATGCCATAGGATTATGAGTGCTCACCTATGTAATGTGATAGGGC
45358864 GCTTAATGCTTTGCAAGCTATTCTATGACGTGTTGTGGTACTGTGAGCTCTATTAAAAATTGTGA
1 GCTTAATGCTTTGCAAGCTATTCTATGACGTGTTGTGGTACTGTGAGCTCTATTAAAAATTGTGA
* *
45358929 GCCTAAAATGACGTGACCTGTACATGTGTATTACTGCGTTATGTTGGCATTGTGAATTTTTGGAA
66 GCCTAAAATGACGTGACCTGTAAATGTGTATTACTGCGATATGTTGGCATTGTGAATTTTTGGAA
*
45358994 CCATTGGATATAGTTGGAATGCCATAGGATTGTGAGTGCTCAC
131 CCATTGGATATAGTTGGAATGCCATAGGATTATGAGTGCTCAC
45359037 TTATATGTGA
Statistics
Matches: 163, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
192 163 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (192 bp):
GCTTAATGCTTTGCAAGCTATTCTATGACGTGTTGTGGTACTGTGAGCTCTATTAAAAATTGTGA
GCCTAAAATGACGTGACCTGTAAATGTGTATTACTGCGATATGTTGGCATTGTGAATTTTTGGAA
CCATTGGATATAGTTGGAATGCCATAGGATTATGAGTGCTCACCTATGTAATGTGATAGGGC
Found at i:45361124 original size:44 final size:44
Alignment explanation
Indices: 45361047--45363006 Score: 1464
Period size: 44 Copynumber: 43.8 Consensus size: 44
45361037 CATTATGGCG
* * ** * *
45361047 AATCTTATC-CCCTAAAGTTACAGCAGAGTAGATTGAAGTTTCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * *
45361090 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGTTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * * * * *
45361134 GATTTTATCTTCTTGAAGTTGCAGTGGAGTAGATCGGAGGTAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* * * *
45361179 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * *
45361223 CACCTTATCT-CCTCGAAGTTGCAGTGGAGCAGATTAAAAATAAACA
1 AATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATT-GAAGT-TACA
*
45361269 AATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAGATAGGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T----TACA
* * * ***
45361318 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTAAAGCCGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * ** **
45361362 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAATAAAAATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* * * * * *
45361407 AATCTTATCTCTCTGAAATTGCAGTAGAGCTGACTTAAAATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGTTACA
* * * * * **
45361452 AATATTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAAGATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* * * * * **
45361497 AATCTTATCACTCTAAAATTGCAGTAGAGCAGATTGAAACTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * * **
45361541 AATCTTATCTCCTTGAAGTTGCAGTGGTGTAAATTGAAGATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
*
45361586 AATCTTTTCTCCCTGAAGTTGCAGTGG-G-ATGGATTGAAGTCATTATGGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCA--GATTGAAG---TTA---CA
*
45361636 AATCTTATC-CTCCTGAAGTTGCAGCGGAGCAGATTGAAGTTACA
1 AATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * *
45361680 AGTCTTATCTCCCTGAAGTTGCAATGGAGCAAATTGAAGTTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * * * *
45361724 GATCTTATCTTCTTGAAGTTGCAGTGCAGTAGA-TCAGAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGTTA-CA
* * * ** * * *
45361769 AATTTTATCTCTCTAAAGTTGCAGTAAAGCAGATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * * *
45361813 CACCTTGTCT-CCTCGAAGTTGCAGTGGAGCA-AGTTAAAAATAAACA
1 AATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGA-TT-GAAGT-TACA
* *
45361859 AATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTGAAGACAGGCTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---GA-A-GTTACA
** * * ***
45361908 AATCTTATCTCATTGAAGTTGCAGTAGAGCAGATTAAAGCCGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * **
45361952 AATCTTATCTCACTGAAGTTGCAGTGGAGCAGAATGCAGATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* * * *
45361997 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACTGAAAATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGTTACA
* * * **
45362042 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAATGAAGATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* * * *
45362087 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACTGAAAATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGTTACA
* * * **
45362132 AATCTTATCTCTCTGAAGTTGCAGTGGAGCAGAATGAAGATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* * * *
45362177 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACTGAAAATTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-AAGTTACA
* * * **
45362222 AATCTTATCTCTCTGAAGTTGCAGTGGAGTAGATTGAAGATAGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CA
* * * * * **
45362267 AATCTTATCTCTCTAAATTTGTAGTAGAGCAGATTGAAACTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * * ***
45362311 AATCTTATTTCCCTAAAGTTACAGTAGAGTAGATTGAA-TATGGTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGT-T-ACA
* *
45362356 AATCTTTTCTCCCTGAAGTTGCAGTGGAGCATATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * * **
45362400 ACTATTATCTCCCTAAAGTTACAGTGGAGTGGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* *
45362444 ACTCTTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * * ** *
45362488 ACTCTTATCTCCCTAAAGTTACAGTAAAGCGGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * *
45362532 ACTATTATCTCCCTGAAGTTGTAGTGGAGTCA-ATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGTTACA
* * * ** *
45362576 ACTCTTATCTCCCTAAAGTTACAGTAAAGCGGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * *
45362620 ACTATTATCTCCCTGAAGTTGTAGTGGAGTCA-ATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGTTACA
* * * ** *
45362664 ACTCTTATCTCCCTAAAGTTACAGTAAAGCGGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * *
45362708 ACTATTATCTCCCTGAAGTTGTAGTGGAGTCA-ATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGTTACA
* * * ** *
45362752 ACTCTTATCTCCCTAAAGTTACAGTAAAGCGGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * *
45362796 ACTATTATCTCCCTGAAGTTGTAGTGGAGTCA-ATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGTTACA
* * * ** *
45362840 ACTCTTATCTCCCTAAAGTTACAGTAAAGCGGATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* * *
45362884 ACTATTATCTCCCTGAAGTTGTAGTGGAGTCA-ATTGAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGTTACA
* * * * * * *
45362928 ACTCTTATCTCCCTAAAGTTACAATGGAACGGATTGAAGTTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
* *
45362972 ACTTTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
45363007 AAAAAGAGTC
Statistics
Matches: 1518, Mismatches: 341, Indels: 115
0.77 0.17 0.06
Matches are distributed among these distances:
43 21 0.01
44 830 0.55
45 465 0.31
46 80 0.05
47 10 0.01
48 4 0.00
49 74 0.05
50 32 0.02
51 1 0.00
52 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACA
Found at i:45361586 original size:179 final size:182
Alignment explanation
Indices: 45361177--45361610 Score: 440
Period size: 179 Copynumber: 2.4 Consensus size: 182
45361167 TCGGAGGTAG
* * * * ** *
45361177 CAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGTTA-T-ACACCTTATCTCCTCGAA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAATAAAAATAGTGA-ATCTTATCTCCT-GAA
* * *
45361240 GTTGCAGTGGAGCAGATTAAAAATAAACAAATCTTATCTCCCTGAAATTGCAGTGGAGCAGATTG
64 GTTGCAGTAGAGCAGATTAAAAATAAACAAATATTATCTCCCTGAAATTGCAGTGGAGCAGATTA
* * * * *
45361305 AAGATAGGCTACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAAATTAAAGCCG
129 AAGATAGGCTA-AAATCTTATCACCTTAAAATTGCAGTAGAGCAAATTAAAGCCA
*
45361360 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAATAAAAATAGTGAATCTTATCTCTCTGAAA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAATAAAAATAGTGAATCTTATCTC-CTGAAG
* * *
45361425 TTGCAGTAGAGCTGACTT-AAAAT-TACAAATATTATCTCCCT-AAAGTTGCAGTGGAGTAGATT
65 TTGCAGTAGAGCAGA-TTAAAAATAAACAAATATTATCTCCCTGAAA-TTGCAGTGGAGCAGATT
* * *
45361487 AAAGATA-G-T-GAATCTTATCA-CTCTAAAATTGCAGTAGAGCAGATTGAAA-CTA
128 AAAGATAGGCTAAAATCTTATCACCT-TAAAATTGCAGTAGAGCAAATT-AAAGCCA
* * * * * * *
45361539 CAAATCTTATCTCCTTGAAGTTGCAGTGGTGTA-AATTGAAGATAGTGAATCTTTTCTCCCTGAA
1 CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAA-TAAAAATAGTGAATCTTATCT-CCTGAA
45361603 GTTGCAGT
64 GTTGCAGT
45361611 GGGATGGATT
Statistics
Matches: 212, Mismatches: 30, Indels: 22
0.80 0.11 0.08
Matches are distributed among these distances:
178 4 0.02
179 87 0.41
180 4 0.02
181 1 0.00
182 4 0.02
183 76 0.36
184 31 0.15
185 5 0.02
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (182 bp):
CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGAATAAAAATAGTGAATCTTATCTCCTGAAGT
TGCAGTAGAGCAGATTAAAAATAAACAAATATTATCTCCCTGAAATTGCAGTGGAGCAGATTAAA
GATAGGCTAAAATCTTATCACCTTAAAATTGCAGTAGAGCAAATTAAAGCCA
Found at i:45363802 original size:12 final size:12
Alignment explanation
Indices: 45363779--45363828 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
45363769 TATGCTAATC
45363779 TTATTT-AATTA
1 TTATTTAAATTA
45363790 TTATTTAAATTA
1 TTATTTAAATTA
* *
45363802 TTCTCTAAAAATTA
1 TTAT-T-TAAATTA
45363816 TTATTTAAATTA
1 TTATTTAAATTA
45363828 T
1 T
45363829 GCATTCAACG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
11 6 0.19
12 15 0.47
13 2 0.06
14 9 0.28
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (12 bp):
TTATTTAAATTA
Found at i:45365112 original size:20 final size:21
Alignment explanation
Indices: 45365078--45365117 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
45365068 AAGTCAATTT
*
45365078 TTATTTTTATTTTATTTATGA
1 TTATTTTTATATTATTTATGA
45365099 TTATTTTTA-ATTATTTATG
1 TTATTTTTATATTATTTATG
45365118 GTATAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
TTATTTTTATATTATTTATGA
Found at i:45366167 original size:17 final size:18
Alignment explanation
Indices: 45366141--45366174 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
45366131 GGTGGTAGAA
*
45366141 AAGAATAAGAG-AAAAAG
1 AAGAAAAAGAGCAAAAAG
45366158 AAGAAAAAGAGCAAAAA
1 AAGAAAAAGAGCAAAAA
45366175 TAAAGATACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.74, C:0.03, G:0.21, T:0.03
Consensus pattern (18 bp):
AAGAAAAAGAGCAAAAAG
Found at i:45367861 original size:29 final size:29
Alignment explanation
Indices: 45367809--45367864 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
45367799 ATAAGGACTA
* * *
45367809 GATCAAATTAGTCTCTCTAGTATTAAATG
1 GATCAAATTAGTCTATATACTATTAAATG
*
45367838 GATCAATTTAGTCTATATACTATTAAA
1 GATCAAATTAGTCTATATACTATTAAA
45367865 AAATCAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (29 bp):
GATCAAATTAGTCTATATACTATTAAATG
Found at i:45368170 original size:11 final size:11
Alignment explanation
Indices: 45368156--45368181 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
45368146 AAAAATAAAA
45368156 AAAAGTATTTT
1 AAAAGTATTTT
45368167 AAAAGTATTTT
1 AAAAGTATTTT
45368178 AAAA
1 AAAA
45368182 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Done.