Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 151 of 313
Found at i:48010815 original size:23 final size:23
Alignment explanation
Indices: 48010771--48010817 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
48010761 TTTCTACTTC
*
48010771 TTTACTCTCTTTTTATTGTTATT
1 TTTACTCTCTTATTATTGTTATT
*
48010794 TTTACTCTCTCTATTCTT-TTATT
1 TTTACTCTCT-TATTATTGTTATT
48010817 T
1 T
48010818 CATAACAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.13, C:0.17, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTACTCTCTTATTATTGTTATT
Found at i:48010951 original size:14 final size:14
Alignment explanation
Indices: 48010932--48010958 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48010922 CCCAACTATC
48010932 TTTTTATTTTTATT
1 TTTTTATTTTTATT
48010946 TTTTTATTTTTAT
1 TTTTTATTTTTAT
48010959 AATTTGGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:48012467 original size:34 final size:35
Alignment explanation
Indices: 48012409--48012476 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 35
48012399 CAAACACCAG
* *
48012409 AAAATATTTTCCAGTAAGTCATTTTACAGAAAATT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAATT
* *
48012444 AAAACATTTTCCCG-AAATCATTTTACGGAAAAT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAT
48012477 ATTTTACTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAATT
Found at i:48027209 original size:19 final size:19
Alignment explanation
Indices: 48027174--48027215 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
48027164 AATATATTTT
*
48027174 ATATATATCATTATCTTAC
1 ATATATACCATTATCTTAC
*
48027193 ATATATACCAATT-TCTTAT
1 ATATATACC-ATTATCTTAC
48027212 ATAT
1 ATAT
48027216 GATTTTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATATACCATTATCTTAC
Found at i:48031383 original size:9 final size:9
Alignment explanation
Indices: 48031369--48031399 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
48031359 GTTAAACGAA
48031369 TCGAGTTAT
1 TCGAGTTAT
*
48031378 TCGAGTTAA
1 TCGAGTTAT
48031387 TCGAGTTAT
1 TCGAGTTAT
48031396 TCGA
1 TCGA
48031400 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:48031469 original size:9 final size:9
Alignment explanation
Indices: 48031452--48031488 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
48031442 TGAGTTTTCA
48031452 AATTCGAAT
1 AATTCGAAT
*
48031461 AACTCGAAT
1 AATTCGAAT
48031470 AATTCGAAT
1 AATTCGAAT
48031479 AATTCGAAT
1 AATTCGAAT
48031488 A
1 A
48031489 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:48031736 original size:30 final size:31
Alignment explanation
Indices: 48031702--48031761 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
48031692 AAACCTTTTA
*
48031702 TTTTCTCCC-AAAATTTTTACTCCC-TCCCAC
1 TTTTC-CCCTAAAACTTTTACTCCCTTCCCAC
*
48031732 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCTAAAACTTTTACTCCCTTCCCA
48031762 TCTACCCCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 18 0.69
31 5 0.19
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCTAAAACTTTTACTCCCTTCCCAC
Found at i:48032019 original size:9 final size:9
Alignment explanation
Indices: 48032005--48032033 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
48031995 AATTTCACAT
48032005 TTTATATTA
1 TTTATATTA
48032014 TTTATATTA
1 TTTATATTA
48032023 TTTATATTA
1 TTTATATTA
48032032 TT
1 TT
48032034 GAATTGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTATATTA
Found at i:48034219 original size:138 final size:138
Alignment explanation
Indices: 48034039--48034314 Score: 552
Period size: 138 Copynumber: 2.0 Consensus size: 138
48034029 AAGAAGGAGA
48034039 CGAAGGGTTTTAATAGGGGAAATTAATTGAAATGACACTATAATTGATATTGGATGATATTGTAT
1 CGAAGGGTTTTAATAGGGGAAATTAATTGAAATGACACTATAATTGATATTGGATGATATTGTAT
48034104 GTGGAATGAAAATGAGATAGTGATTTGAAATATGGATTGAGACACATGAATTGTGTATTCATGAA
66 GTGGAATGAAAATGAGATAGTGATTTGAAATATGGATTGAGACACATGAATTGTGTATTCATGAA
48034169 TTGGATAT
131 TTGGATAT
48034177 CGAAGGGTTTTAATAGGGGAAATTAATTGAAATGACACTATAATTGATATTGGATGATATTGTAT
1 CGAAGGGTTTTAATAGGGGAAATTAATTGAAATGACACTATAATTGATATTGGATGATATTGTAT
48034242 GTGGAATGAAAATGAGATAGTGATTTGAAATATGGATTGAGACACATGAATTGTGTATTCATGAA
66 GTGGAATGAAAATGAGATAGTGATTTGAAATATGGATTGAGACACATGAATTGTGTATTCATGAA
48034307 TTGGATAT
131 TTGGATAT
48034315 GGAATGAACA
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 138 1.00
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.34
Consensus pattern (138 bp):
CGAAGGGTTTTAATAGGGGAAATTAATTGAAATGACACTATAATTGATATTGGATGATATTGTAT
GTGGAATGAAAATGAGATAGTGATTTGAAATATGGATTGAGACACATGAATTGTGTATTCATGAA
TTGGATAT
Found at i:48040373 original size:103 final size:104
Alignment explanation
Indices: 48040129--48040394 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
48040119 GTTGTACATA
** *
48040129 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
48040194 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
48040233 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
48040297 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
48040336 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
48040395 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:48063059 original size:7 final size:7
Alignment explanation
Indices: 48063049--48063085 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
48063039 TTAATTAATT
48063049 TTTTAAA
1 TTTTAAA
48063056 TTTTAAA
1 TTTTAAA
48063063 TTTTAAA
1 TTTTAAA
48063070 TTTTAAA
1 TTTTAAA
48063077 TTTTAAA
1 TTTTAAA
48063084 TT
1 TT
48063086 ATAGTAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTTAAA
Found at i:48069040 original size:9 final size:9
Alignment explanation
Indices: 48069026--48069074 Score: 80
Period size: 9 Copynumber: 5.4 Consensus size: 9
48069016 TTTGGTTAAA
48069026 AATTAACCG
1 AATTAACCG
*
48069035 AATTAATCG
1 AATTAACCG
*
48069044 AATTACCCG
1 AATTAACCG
48069053 AATTAACCG
1 AATTAACCG
48069062 AATTAACCG
1 AATTAACCG
48069071 AATT
1 AATT
48069075 GAATCACTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:48069217 original size:18 final size:18
Alignment explanation
Indices: 48069177--48069220 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
48069167 AATTTTTATG
**
48069177 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
48069195 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
48069213 CTTGGGTT
1 ATTGGGTT
48069221 TGGATTGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:48072058 original size:43 final size:43
Alignment explanation
Indices: 48072028--48072133 Score: 167
Period size: 43 Copynumber: 2.5 Consensus size: 43
48072018 AGCAAGTCAG
* * *
48072028 AGCAATTGTATTGGCACACGAGGTGTATCATCGAATGAACCAA
1 AGCAATTATATTGGCACACGAAGTGCATCATCGAATGAACCAA
* *
48072071 AGCAATTATATTGGCACACGAAGTGCATCATTGGATGAACCAA
1 AGCAATTATATTGGCACACGAAGTGCATCATCGAATGAACCAA
48072114 AGCAATTATATTGGCACACG
1 AGCAATTATATTGGCACACG
48072134 TAATTCATCA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.24
Consensus pattern (43 bp):
AGCAATTATATTGGCACACGAAGTGCATCATCGAATGAACCAA
Found at i:48072143 original size:43 final size:42
Alignment explanation
Indices: 48072028--48072175 Score: 154
Period size: 43 Copynumber: 3.5 Consensus size: 42
48072018 AGCAAGTCAG
* * * *
48072028 AGCAATTGTATTGGCACACGAGGTGT-ATCATCGAATGAACCAA
1 AGCAATTATATTGGCACACGA-AT-TCATCATTGGATGAACCAA
*
48072071 AGCAATTATATTGGCACACGAAGTGCATCATTGGATGAACCAA
1 AGCAATTATATTGGCACACGAA-TTCATCATTGGATGAACCAA
* * **
48072114 AGCAATTATATTGGCACACGTAATTCATCATTAGATAAACTGA
1 AGCAATTATATTGGCACACG-AATTCATCATTGGATGAACCAA
* *
48072157 AGTAATTATACTGGCACAC
1 AGCAATTATATTGGCACAC
48072176 ATAGTGCACC
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
43 88 0.98
44 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (42 bp):
AGCAATTATATTGGCACACGAATTCATCATTGGATGAACCAA
Found at i:48072189 original size:43 final size:43
Alignment explanation
Indices: 48072065--48072205 Score: 160
Period size: 43 Copynumber: 3.3 Consensus size: 43
48072055 TCATCGAATG
* *
48072065 AACCAAAGCAATTATATTGGCACACGA-AGTGCATCATTGGATG
1 AACCAAAGCAATTATATTGGCACAC-ATAGTGCATCATTAGATA
* * *
48072108 AACCAAAGCAATTATATTGGCACACGTAATTCATCATTAGATA
1 AACCAAAGCAATTATATTGGCACACATAGTGCATCATTAGATA
** * * *
48072151 AACTGAAGTAATTATACTGGCACACATAGTGCACCATTAGATA
1 AACCAAAGCAATTATATTGGCACACATAGTGCATCATTAGATA
48072194 AACCGAAA-CAAT
1 AACC-AAAGCAAT
48072206 CATACTAACA
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
43 78 0.98
44 2 0.03
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (43 bp):
AACCAAAGCAATTATATTGGCACACATAGTGCATCATTAGATA
Found at i:48085122 original size:27 final size:26
Alignment explanation
Indices: 48085087--48085143 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
48085077 GAAAGGTAAT
48085087 TTTTTTAAT-TATAATTTATTTGTTTAA
1 TTTTTTAATATAT-A-TTATTTGTTTAA
* *
48085114 TTTTTTAATATTTATTATTTGTTTGA
1 TTTTTTAATATATATTATTTGTTTAA
48085140 TTTT
1 TTTT
48085144 GTGGTTTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 15 0.56
27 10 0.37
28 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (26 bp):
TTTTTTAATATATATTATTTGTTTAA
Found at i:48088242 original size:22 final size:22
Alignment explanation
Indices: 48088212--48088254 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
48088202 TATATTTCAA
48088212 AACACAACTTTTGACTTTTTTTT
1 AACACAACTTTTG-CTTTTTTTT
*
48088235 AACA-AACTTTTGGTTTTTTT
1 AACACAACTTTTGCTTTTTTT
48088255 GAAAACAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 8 0.42
23 4 0.21
ACGTcount: A:0.26, C:0.14, G:0.07, T:0.53
Consensus pattern (22 bp):
AACACAACTTTTGCTTTTTTTT
Found at i:48088261 original size:23 final size:23
Alignment explanation
Indices: 48088210--48088262 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
48088200 ATTATATTTC
48088210 AAAACACAACTTTTGACTTTTTTT
1 AAAACA-AACTTTTGACTTTTTTT
* *
48088234 -TAACAAACTTTTG-GTTTTTTT
1 AAAACAAACTTTTGACTTTTTTT
48088255 GAAAACAA
1 -AAAACAA
48088263 TATTCATGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
21 7 0.29
22 8 0.33
23 9 0.38
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.43
Consensus pattern (23 bp):
AAAACAAACTTTTGACTTTTTTT
Found at i:48093340 original size:15 final size:15
Alignment explanation
Indices: 48093320--48093353 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
48093310 GTTTTCTTTC
48093320 AAATTAAGGTTCATG
1 AAATTAAGGTTCATG
48093335 AAATTAAGGTTCATG
1 AAATTAAGGTTCATG
48093350 AAAT
1 AAAT
48093354 GGTATCCGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (15 bp):
AAATTAAGGTTCATG
Found at i:48105622 original size:21 final size:20
Alignment explanation
Indices: 48105561--48105622 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 20
48105551 ATTTATTAAT
*
48105561 AAAAATTAAAC--TTTTAAA
1 AAAAATTAAACAATTTTATA
*
48105579 AAAAATTAAAACAGTTTCT-TA
1 AAAAATT-AAACAATTT-TATA
48105600 AAAAATTAAACAAATTTTATA
1 AAAAATTAAAC-AATTTTATA
48105621 AA
1 AA
48105623 GACTTTTATA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 7 0.19
19 4 0.11
20 5 0.14
21 19 0.53
22 1 0.03
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAAATTAAACAATTTTATA
Found at i:48111854 original size:30 final size:30
Alignment explanation
Indices: 48111818--48111881 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
48111808 AAAAAGACAA
* **
48111818 CTTATATTGGTAGATGAACCTAAACATGTC
1 CTTATATTAGTAGACAAACCTAAACATGTC
* *
48111848 CTTATATTAGTAGACAAACCTACACATTTC
1 CTTATATTAGTAGACAAACCTAAACATGTC
48111878 CTTA
1 CTTA
48111882 GTCTAATTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (30 bp):
CTTATATTAGTAGACAAACCTAAACATGTC
Found at i:48113396 original size:43 final size:41
Alignment explanation
Indices: 48113340--48113446 Score: 126
Period size: 43 Copynumber: 2.6 Consensus size: 41
48113330 GAGGTGTGGT
* *
48113340 TTCGTGTAGGACCATGTCTGGGACATTGACATCG-ATATGAGA
1 TTCGTGTAAGACCATGTCTGGGACATTGACACCGTATAT--GA
* * *
48113382 TTATGTGTAAGACCATGTCTAGGACATTGGCACCGTATATGA
1 TT-CGTGTAAGACCATGTCTGGGACATTGACACCGTATATGA
*
48113424 TTCGTGTAAGACCCTGTCTGGGA
1 TTCGTGTAAGACCATGTCTGGGA
48113447 TAGAGCCATC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 18 0.33
42 6 0.11
43 27 0.49
44 4 0.07
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (41 bp):
TTCGTGTAAGACCATGTCTGGGACATTGACACCGTATATGA
Found at i:48118145 original size:19 final size:17
Alignment explanation
Indices: 48118123--48118159 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
48118113 ACATTTATAC
48118123 AAAATAAAAAATATATAAA
1 AAAAT-AAAAAT-TATAAA
48118142 AAAATAAAAATTATAAA
1 AAAATAAAAATTATAAA
48118159 A
1 A
48118160 CTATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 6 0.33
19 5 0.28
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAATAAAAATTATAAA
Found at i:48118150 original size:17 final size:17
Alignment explanation
Indices: 48118022--48118174 Score: 50
Period size: 16 Copynumber: 8.7 Consensus size: 17
48118012 ATTAGTTTGA
*
48118022 AAAATATAT-AAAATAT
1 AAAATATATAAAAAAAT
*
48118038 AAAAT-TATAAAAATAT
1 AAAATATATAAAAAAAT
* * **
48118054 AAACTA-AGTAGAATTA-
1 AAAATATA-TAAAAAAAT
*
48118070 AAAATATATAAAAAACT
1 AAAATATATAAAAAAAT
* *
48118087 ATAATATTTTAAAAAATAT
1 AAAATA-TATAAAAAA-AT
48118106 AATATATACATTTATACAAAATAA-
1 AA-A-AT--A--TATA-AAAA-AAT
48118130 AAAATATATAAAAAAAT
1 AAAATATATAAAAAAAT
* *
48118147 AAAA-AT-TATAAAACT
1 AAAATATATAAAAAAAT
48118162 ATAAATATATAAA
1 A-AAATATATAAA
48118175 TTATTAAAAA
Statistics
Matches: 103, Mismatches: 16, Indels: 34
0.67 0.10 0.22
Matches are distributed among these distances:
15 11 0.11
16 33 0.32
17 22 0.21
18 15 0.15
19 2 0.02
20 2 0.02
21 2 0.02
22 2 0.02
23 2 0.02
24 6 0.06
25 5 0.05
26 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.30
Consensus pattern (17 bp):
AAAATATATAAAAAAAT
Found at i:48126065 original size:24 final size:24
Alignment explanation
Indices: 48125994--48126077 Score: 64
Period size: 24 Copynumber: 3.5 Consensus size: 24
48125984 ACAGCTCGAA
*
48125994 AGAGCGTCCCGTTATTAGCTC-TC
1 AGAGCGTCCCGTTAATAGCTCTTC
* * * *
48126017 ATGAGC-TCTCCATTATATGGTTCTTG
1 A-GAGCGTC-CCGTTA-ATAGCTCTTC
48126043 AGAGCGTCCCGTTAATAGCTCTTC
1 AGAGCGTCCCGTTAATAGCTCTTC
* *
48126067 GGAGCATCCCG
1 AGAGCGTCCCG
48126078 ATCGGTCGTG
Statistics
Matches: 45, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
23 3 0.07
24 25 0.56
25 13 0.29
26 4 0.09
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.31
Consensus pattern (24 bp):
AGAGCGTCCCGTTAATAGCTCTTC
Found at i:48126169 original size:26 final size:26
Alignment explanation
Indices: 48126140--48126208 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 26
48126130 CCCGTTACAT
* *
48126140 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTCCGTGAGCTTCCCAATTAAA
* *
48126166 GGCTCTCCGTGAGCTTCCTAATTAAT
1 GGCTCTCCGTGAGCTTCCCAATTAAA
48126192 GGCTCTCCG-GAGCTTCC
1 GGCTCTCCGTGAGCTTCC
48126209 TGATATGGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 8 0.21
26 31 0.79
ACGTcount: A:0.16, C:0.30, G:0.23, T:0.30
Consensus pattern (26 bp):
GGCTCTCCGTGAGCTTCCCAATTAAA
Found at i:48128840 original size:21 final size:21
Alignment explanation
Indices: 48128810--48128851 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
48128800 TTTTCCAAAG
*
48128810 ATGTGTATTGGATTAAATTGA
1 ATGTGAATTGGATTAAATTGA
* *
48128831 ATGTGAATTGTATTAAGTTGA
1 ATGTGAATTGGATTAAATTGA
48128852 GATAAATTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (21 bp):
ATGTGAATTGGATTAAATTGA
Found at i:48129244 original size:24 final size:24
Alignment explanation
Indices: 48129202--48129355 Score: 86
Period size: 24 Copynumber: 6.3 Consensus size: 24
48129192 TAGCTCTTCG
* *
48129202 GAGCTTCCTAATAATTGGCTCTAAT
1 GAGCTTCC-GATAAATGGCTCTAAT
**
48129227 GAGCTTCCGATAAATGGCTCT-CC
1 GAGCTTCCGATAAATGGCTCTAAT
* **
48129250 GTAG-TTCCCGATTAATGGCTCTCTT
1 G-AGCTT-CCGATAAATGGCTCTAAT
* *
48129275 GAGTTTCTCGAT-TATGGCTCGT-AT
1 GAGCTTC-CGATAAATGGCTC-TAAT
* *
48129299 GAGCTTCCTGATAATTGGCTCGCAA-
1 GAGCTTCC-GATAAATGGCTC-TAAT
48129324 GAGCTTCTCGATAAATGGCTC-ACAT
1 GAGCTTC-CGATAAATGGCTCTA-AT
48129349 GAGCTTC
1 GAGCTTC
48129356 TTGTTACATG
Statistics
Matches: 103, Mismatches: 14, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
23 5 0.05
24 48 0.47
25 48 0.47
26 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.21, T:0.33
Consensus pattern (24 bp):
GAGCTTCCGATAAATGGCTCTAAT
Found at i:48129318 original size:25 final size:23
Alignment explanation
Indices: 48129202--48129369 Score: 74
Period size: 25 Copynumber: 6.9 Consensus size: 23
48129192 TAGCTCTTCG
*
48129202 GAGCTTCCTAATAATTGGCTCTAAT
1 GAGCTTCCTGATAA-TGGCTCT-AT
**
48129227 GAGCTTCC-GATAAATGGCTCTCC
1 GAGCTTCCTGAT-AATGGCTCTAT
* *
48129250 GTAG-TTCCCGATTAATGGCTCTCTT
1 G-AGCTTCCTGA-TAATGGCTCT-AT
* *
48129275 GAG-TTTCTCGATTATGGCTCGTAT
1 GAGCTTCCT-GATAATGGCTC-TAT
* *
48129299 GAGCTTCCTGATAATTGGCTCGCAA
1 GAGCTTCCTGATAA-TGGCTC-TAT
*
48129324 GAGCTT-CTCGATAAATGGCTCACAT
1 GAGCTTCCT-GAT-AATGGCTC-TAT
* *
48129349 GAGCTTCTTGTTACATGGCTC
1 GAGCTTCCTGATA-ATGGCTC
48129370 GAAAGAGATT
Statistics
Matches: 113, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
23 5 0.04
24 46 0.41
25 59 0.52
26 3 0.03
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (23 bp):
GAGCTTCCTGATAATGGCTCTAT
Found at i:48129353 original size:50 final size:49
Alignment explanation
Indices: 48129202--48129385 Score: 135
Period size: 50 Copynumber: 3.7 Consensus size: 49
48129192 TAGCTCTTCG
* * * *
48129202 GAGCTTCCTAATAATTGGCTC-TAATGAGCTTC-CGATAAATGGCTCTC-C
1 GAGCTTCCTGATAA-TGGCTCGCAA-GAGCTTCTCGATAAATGGCTCACAT
* * ** * * **
48129250 GTAG-TTCCCGATTAATGGCTCTCTTGAGTTTCTCGAT-TATGGCTCGTAT
1 G-AGCTTCCTGA-TAATGGCTCGCAAGAGCTTCTCGATAAATGGCTCACAT
48129299 GAGCTTCCTGATAATTGGCTCGCAAGAGCTTCTCGATAAATGGCTCACAT
1 GAGCTTCCTGATAA-TGGCTCGCAAGAGCTTCTCGATAAATGGCTCACAT
* * * *
48129349 GAGCTTCTTGTTACATGGCTCGAAAGAGATTCTCGAT
1 GAGCTTCCTGATA-ATGGCTCGCAAGAGCTTCTCGAT
48129386 TATATGAGTA
Statistics
Matches: 105, Mismatches: 22, Indels: 16
0.73 0.15 0.11
Matches are distributed among these distances:
48 30 0.29
49 34 0.32
50 40 0.38
51 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (49 bp):
GAGCTTCCTGATAATGGCTCGCAAGAGCTTCTCGATAAATGGCTCACAT
Found at i:48130802 original size:78 final size:78
Alignment explanation
Indices: 48130673--48130914 Score: 466
Period size: 78 Copynumber: 3.1 Consensus size: 78
48130663 CATAAGGGAC
48130673 ATTATGCTTGATTACAACTGGTTTCTGATATGAGTGCTAAATGATATGAAATGTCTATTATTTGT
1 ATTATGCTTGATTACAACTGGTTTCTGATATGAGTGCTAAATGATATGAAATGTCTATTATTTGT
48130738 TTTGTAAATTTCG
66 TTTGTAAATTTCG
48130751 ATTATGCTTGATTACAACTGGTTTCTGATATGAGTGCTAAATGATATGAAATGTCTATTATTTGT
1 ATTATGCTTGATTACAACTGGTTTCTGATATGAGTGCTAAATGATATGAAATGTCTATTATTTGT
48130816 TTTGTAAATTTCG
66 TTTGTAAATTTCG
48130829 ATTATGCTTGATTACAACTGGTTTCTGATATGAGTGCTAAATGATATGAAATGTCTATTATTTGT
1 ATTATGCTTGATTACAACTGGTTTCTGATATGAGTGCTAAATGATATGAAATGTCTATTATTTGT
*
48130894 TCTGTAAATTTCG
66 TTTGTAAATTTCG
*
48130907 ATAATGCT
1 ATTATGCT
48130915 CCGTAACCCT
Statistics
Matches: 162, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 162 1.00
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.44
Consensus pattern (78 bp):
ATTATGCTTGATTACAACTGGTTTCTGATATGAGTGCTAAATGATATGAAATGTCTATTATTTGT
TTTGTAAATTTCG
Found at i:48136816 original size:3 final size:3
Alignment explanation
Indices: 48136810--48136843 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
48136800 CAGACGTAGT
48136810 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
48136844 TTCTCAGCGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:48141169 original size:3 final size:3
Alignment explanation
Indices: 48141156--48141189 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
48141146 TGTAATCATG
48141156 ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
48141190 GTTTTTAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:48147561 original size:17 final size:17
Alignment explanation
Indices: 48147541--48147575 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
48147531 CAAAATTAAA
* *
48147541 TTTTTATAAATGTTTAT
1 TTTTTAAAAATGCTTAT
48147558 TTTTTAAAAATGCTTAT
1 TTTTTAAAAATGCTTAT
48147575 T
1 T
48147576 ATATTATGCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.60
Consensus pattern (17 bp):
TTTTTAAAAATGCTTAT
Found at i:48148917 original size:44 final size:45
Alignment explanation
Indices: 48148834--48148922 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 45
48148824 AGCTGTAATT
* * *
48148834 GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATG
1 GAATAGAGCTGTAAT-AGAAATTCAATTGTTTAGATGAATGGAATG
*
48148880 GAATAGAGCTGTAAT-GAAATTC-TTGTGTTTAGATGAATGGAAT
1 GAATAGAGCTGTAATAGAAATTCAAT-TGTTTAGATGAATGGAAT
48148923 AGATGTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
43 1 0.03
44 22 0.58
46 15 0.39
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.35
Consensus pattern (45 bp):
GAATAGAGCTGTAATAGAAATTCAATTGTTTAGATGAATGGAATG
Found at i:48149087 original size:57 final size:57
Alignment explanation
Indices: 48149010--48149148 Score: 174
Period size: 57 Copynumber: 2.4 Consensus size: 57
48149000 ATTGTTTGTT
* * * *
48149010 ATCAAATTTTAATAAAATTATTGTTAAATATATTTTATTAAAA-AAATAAATAATTTA
1 ATCAAATTTTAATATAATTATTATTAAATATAATTTAATAAAATAAA-AAATAATTTA
* * *
48149067 ATCATATTTTAACATAATTATTATTAAATATAATTTAATAAAATAAAATATAATTTA
1 ATCAAATTTTAATATAATTATTATTAAATATAATTTAATAAAATAAAAAATAATTTA
48149124 AT-AACATTCTTAATATAATTATTAT
1 ATCAA-ATT-TTAATATAATTATTAT
48149149 ATGAATTAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.01
57 51 0.73
58 18 0.26
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.45
Consensus pattern (57 bp):
ATCAAATTTTAATATAATTATTATTAAATATAATTTAATAAAATAAAAAATAATTTA
Found at i:48155205 original size:23 final size:22
Alignment explanation
Indices: 48155166--48155208 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
48155156 AAATATAAAA
*
48155166 TATAAAAATATATATATGTACG
1 TATAAAAAAATATATATGTACG
48155188 TATAAGAAAAATATATATGTA
1 TATAA-AAAAATATATATGTA
48155209 TGTGAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.53, C:0.02, G:0.09, T:0.35
Consensus pattern (22 bp):
TATAAAAAAATATATATGTACG
Found at i:48155235 original size:15 final size:15
Alignment explanation
Indices: 48155217--48155245 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
48155207 TATGTGAATT
48155217 ATAAAAAATAAAAAA
1 ATAAAAAATAAAAAA
48155232 ATAAAAAATAAAAA
1 ATAAAAAATAAAAA
48155246 TATACATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (15 bp):
ATAAAAAATAAAAAA
Found at i:48155345 original size:36 final size:38
Alignment explanation
Indices: 48155305--48155385 Score: 91
Period size: 36 Copynumber: 2.2 Consensus size: 38
48155295 TGAAACATAG
*
48155305 AAAATATATAAAAGTATG-T-GTATATATATAT-TTAT
1 AAAATATATAAAAATATGTTCGTATATATATATATTAT
* *
48155340 AAAA-AT-TAAAAAATGTGTTCGTATATGTATATATTAT
1 AAAATATAT-AAAAATATGTTCGTATATATATATATTAT
48155377 AAAATATAT
1 AAAATATAT
48155386 GTATGTATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
33 1 0.03
34 9 0.24
35 5 0.14
36 11 0.30
37 8 0.22
38 2 0.05
39 1 0.03
ACGTcount: A:0.49, C:0.01, G:0.09, T:0.41
Consensus pattern (38 bp):
AAAATATATAAAAATATGTTCGTATATATATATATTAT
Found at i:48159721 original size:126 final size:126
Alignment explanation
Indices: 48159572--48159823 Score: 468
Period size: 126 Copynumber: 2.0 Consensus size: 126
48159562 TTGTTGAATT
*
48159572 TTTATCAAATTATTGGTTTAAAATTATGGTTTTAGGTTTATTTGGAACCTATATATTGTATTTTC
1 TTTATCAAATTATTGGTTGAAAATTATGGTTTTAGGTTTATTTGGAACCTATATATTGTATTTTC
* *
48159637 TTGTAGGAGGTTGCCTAAACTTAGTCAAAATTTTGAAAATTTTCTTTAAACCCTTTGCCTA
66 TTGTAGGAGGTTACCTAAACTTAGTCAAAATTTTGAAAATTTTCTTTAAAACCTTTGCCTA
*
48159698 TTTATCAAATTATTGGTTGAAAATTATGTTTTTAGGTTTATTTGGAACCTATATATTGTATTTTC
1 TTTATCAAATTATTGGTTGAAAATTATGGTTTTAGGTTTATTTGGAACCTATATATTGTATTTTC
48159763 TTGTAGGAGGTTACCTAAACTTAGTCAAAATTTTGAAAATTTTCTTTAAAACCTTTGCCTA
66 TTGTAGGAGGTTACCTAAACTTAGTCAAAATTTTGAAAATTTTCTTTAAAACCTTTGCCTA
48159824 CAAGTTGTTT
Statistics
Matches: 122, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
126 122 1.00
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (126 bp):
TTTATCAAATTATTGGTTGAAAATTATGGTTTTAGGTTTATTTGGAACCTATATATTGTATTTTC
TTGTAGGAGGTTACCTAAACTTAGTCAAAATTTTGAAAATTTTCTTTAAAACCTTTGCCTA
Found at i:48161365 original size:61 final size:60
Alignment explanation
Indices: 48161281--48161478 Score: 207
Period size: 61 Copynumber: 3.1 Consensus size: 60
48161271 ATAATATATA
*
48161281 TATATACATGTGGTTCGAATGTATGTTTCAATTTCCTTGAGCTGAATTTAATGTTATGAAT
1 TATATATATGTGGTTCGAATGTATGTTTCAATTT-CTTGAGCTGAATTTAATGTTATGAAT
* * * * * * *
48161342 TATATATATGAGGTTGGAATGTATGTTACAAATTTTTTTAGCTGAACTTAATGTCATGAATT
1 TATATATATGTGGTTCGAATGTATGTTTC-AATTTCTTGAGCTGAATTTAATGTTATGAA-T
* * * *
48161404 ATATATACATACATGTGGTTCGAATATATGTTTCAATCTCTGTGAGCTGAATTTAATTTTGTGAA
1 -TATAT--AT--ATGTGGTTCGAATGTATGTTTCAATTTCT-TGAGCTGAATTTAATGTTATGAA
48161469 T
60 T
48161470 TATATATAT
1 TATATATAT
48161479 ATATGGTTTG
Statistics
Matches: 110, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
61 48 0.44
62 6 0.05
63 7 0.06
65 7 0.06
66 6 0.05
67 36 0.33
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.44
Consensus pattern (60 bp):
TATATATATGTGGTTCGAATGTATGTTTCAATTTCTTGAGCTGAATTTAATGTTATGAAT
Found at i:48161460 original size:67 final size:64
Alignment explanation
Indices: 48161275--48161477 Score: 209
Period size: 67 Copynumber: 3.1 Consensus size: 64
48161265 AATAGTATAA
48161275 TATATATATATACATGTGGTTCGAATGTATGTTTCAATTTCCTTGAGCTGAATTTAATGTTATGA
1 TATATATA-ATACATGTGGTTCGAATGTATGTTTCAA-TT-CTTGAGCTGAATTTAATGTTATGA
48161340 A-
63 AT
* * * * * * *
48161341 T-TATAT-AT--ATGAGGTTGGAATGTATGTTACAAATTTTTTTAGCTGAACTTAATGTCATGAA
1 TATATATAATACATGTGGTTCGAATGTATGTTTC-AA-TTCTTGAGCTGAATTTAATGTTATGAA
48161402 T
64 T
* * *
48161403 TATATATACATACATGTGGTTCGAATATATGTTTCAATCTCTGTGAGCTGAATTTAATTTTGTGA
1 TATATATA-ATACATGTGGTTCGAATGTATGTTTCAAT-TCT-TGAGCTGAATTTAATGTTATGA
48161468 AT
63 AT
48161470 TATATATA
1 TATATATA
48161478 TATATGGTTT
Statistics
Matches: 111, Mismatches: 17, Indels: 17
0.77 0.12 0.12
Matches are distributed among these distances:
61 40 0.36
62 6 0.05
63 7 0.06
65 8 0.07
66 5 0.05
67 45 0.41
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (64 bp):
TATATATAATACATGTGGTTCGAATGTATGTTTCAATTCTTGAGCTGAATTTAATGTTATGAAT
Found at i:48161918 original size:107 final size:107
Alignment explanation
Indices: 48161732--48161946 Score: 430
Period size: 107 Copynumber: 2.0 Consensus size: 107
48161722 CATGTGTTTA
48161732 GTAAGTTCCTTGTCAATCTAATCTAATATCAAATGGATTGCAAAATTATAATAATCAGGTATGTG
1 GTAAGTTCCTTGTCAATCTAATCTAATATCAAATGGATTGCAAAATTATAATAATCAGGTATGTG
48161797 TTATGTTATATCTTATTTAATGATTAGCTAAGTACATTGGTC
66 TTATGTTATATCTTATTTAATGATTAGCTAAGTACATTGGTC
48161839 GTAAGTTCCTTGTCAATCTAATCTAATATCAAATGGATTGCAAAATTATAATAATCAGGTATGTG
1 GTAAGTTCCTTGTCAATCTAATCTAATATCAAATGGATTGCAAAATTATAATAATCAGGTATGTG
48161904 TTATGTTATATCTTATTTAATGATTAGCTAAGTACATTGGTC
66 TTATGTTATATCTTATTTAATGATTAGCTAAGTACATTGGTC
48161946 G
1 G
48161947 ATTATATTTA
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 108 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.40
Consensus pattern (107 bp):
GTAAGTTCCTTGTCAATCTAATCTAATATCAAATGGATTGCAAAATTATAATAATCAGGTATGTG
TTATGTTATATCTTATTTAATGATTAGCTAAGTACATTGGTC
Found at i:48162858 original size:16 final size:16
Alignment explanation
Indices: 48162829--48162898 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
48162819 TTTGGTTCGC
* *
48162829 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
*
48162845 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
48162861 TGTAATGGATTAGAGG
1 TGTAATGGAATAGAGG
48162877 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
48162893 TGTAAT
1 TGTAAT
48162899 AGCAAATCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.33, C:0.01, G:0.36, T:0.30
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:48162875 original size:32 final size:32
Alignment explanation
Indices: 48162829--48162898 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
48162819 TTTGGTTCGC
*
48162829 TGTATTGGATTAGAGGCGTAATGGAATAGAGG
1 TGTAATGGATTAGAGGCGTAATGGAATAGAGG
*
48162861 TGTAATGGATTAGAGGTGTAATGGAATAGAGG
1 TGTAATGGATTAGAGGCGTAATGGAATAGAGG
48162893 TGTAAT
1 TGTAAT
48162899 AGCAAATCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.33, C:0.01, G:0.36, T:0.30
Consensus pattern (32 bp):
TGTAATGGATTAGAGGCGTAATGGAATAGAGG
Found at i:48162982 original size:39 final size:43
Alignment explanation
Indices: 48162877--48162986 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
48162867 GGATTAGAGG
48162877 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
48162922 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
48162962 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
48162987 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:48163149 original size:16 final size:16
Alignment explanation
Indices: 48163112--48163153 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
48163102 TTAATCATAT
*
48163112 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
48163128 TT-AAATATATTATAA
1 TTAAAATATATTATAA
48163143 TTAAAATATAT
1 TTAAAATATAT
48163154 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:48163160 original size:14 final size:15
Alignment explanation
Indices: 48163121--48163162 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
48163111 TTTAAACATA
*
48163121 ATTATTATTAAATAT
1 ATTATAATTAAATAT
48163136 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
48163150 A-TATAATTTAATA
1 ATTATAATTAAATA
48163163 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:48163213 original size:61 final size:61
Alignment explanation
Indices: 48163147--48163454 Score: 259
Period size: 61 Copynumber: 5.1 Consensus size: 61
48163137 TTATAATTAA
*
48163147 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * *
48163208 AATATATGATACT-ATAAAA-T-AT-A-AATTAACATAATTATTAT-TAAATATA-TTATAATTA
1 AATATATAAT-TTAATAAAATTCTTAATAATT-A-AT-ATTCTTATATGAATTTACTCA-AATCA
*
48163266 A
61 T
48163267 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * ** *
48163328 AATATATGATACTATAAAAGATAATT-TGAAATAATTAATATT-AAATAT--ATTT--T--AATT
1 AATATAT-A-A-TTTAATA-A-AATTCT-TAATAATTAATATTCTTATATGAATTTACTCAAATC
*
48163385 AA
60 AT
48163387 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
48163448 AATATAT
1 AATATAT
48163455 GATACTATAA
Statistics
Matches: 188, Mismatches: 33, Indels: 52
0.69 0.12 0.19
Matches are distributed among these distances:
54 17 0.09
55 6 0.03
56 5 0.03
57 8 0.04
58 6 0.03
59 40 0.21
60 16 0.09
61 47 0.25
62 6 0.03
63 9 0.05
64 5 0.03
65 6 0.03
66 17 0.09
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:48163280 original size:14 final size:15
Alignment explanation
Indices: 48163231--48163282 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
48163221 ATAAAATATA
48163231 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
48163246 TATTAAATATATTAT
1 AATTAAATATATTAT
48163261 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
48163274 AATTTAATA
1 AATTAAATA
48163283 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:48163328 original size:120 final size:121
Alignment explanation
Indices: 48163115--48163471 Score: 655
Period size: 120 Copynumber: 3.0 Consensus size: 121
48163105 ATCATATTTA
*
48163115 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
48163180 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
48163235 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
48163300 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* *
48163356 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
48163420 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAA
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAA
48163472 NNNNNNNNNN
Statistics
Matches: 231, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
120 229 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
Found at i:48163399 original size:18 final size:17
Alignment explanation
Indices: 48163372--48163406 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
48163362 TTAATATTAA
*
48163372 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
48163390 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
48163407 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:48165391 original size:15 final size:15
Alignment explanation
Indices: 48165371--48165401 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
48165361 ATATTATGTA
48165371 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
48165386 TAATTGAGGTAAAAT
1 TAATTGAGGTAAAAT
48165401 T
1 T
48165402 TGAAGGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.19, T:0.35
Consensus pattern (15 bp):
TAATTGAGGTAAAAT
Found at i:48173191 original size:24 final size:24
Alignment explanation
Indices: 48173164--48173213 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
48173154 AGAAAAATAA
48173164 AATATATTAAATGTAAATTATGCT
1 AATATATTAAATGTAAATTATGCT
48173188 AATATATTAAATGTAAATTATGCT
1 AATATATTAAATGTAAATTATGCT
48173212 AA
1 AA
48173214 AAGAAGCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (24 bp):
AATATATTAAATGTAAATTATGCT
Found at i:48174042 original size:124 final size:125
Alignment explanation
Indices: 48173775--48174061 Score: 461
Period size: 125 Copynumber: 2.3 Consensus size: 125
48173765 ATTTATTAAG
* * *
48173775 GAAATCGCTCCTACGTGGACGCGTTTTTGATACAGTAGGTCCTGAAAAAATAATTTCGACTTGAT
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGAT
*
48173840 GTTTCTGAGCAAATAGTATAAAAAAAGTTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
66 GTTTCTGAGCAAATAGTATAAAAAAAGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
* * *
48173900 GAAATCGCTCCCAAGTGGACGCACTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGA-
* *
48173965 T-TTTCTTAGCAAATAGTAT-AAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
65 TGTTTCTGAGCAAATAGTATAAAAAAAGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
*
48174024 GAAATCGCTCCCACGTGGATGCGCTTTTGCTACAGTAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
48174062 CATGTTTGGG
Statistics
Matches: 149, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
124 73 0.49
125 75 0.50
126 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (125 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGAT
GTTTCTGAGCAAATAGTATAAAAAAAGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
Found at i:48177213 original size:49 final size:49
Alignment explanation
Indices: 48177158--48177316 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 49
48177148 TAAGAATATT
* * *
48177158 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAAAA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
48177207 AACTATTTTGTATTTTATTACATCAAATTATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
48177256 AATTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
48177305 AACTATTTTGTA
1 AACTATTTTGTA
48177317 CAAATAAATT
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 103 1.00
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:48177340 original size:49 final size:48
Alignment explanation
Indices: 48177158--48177340 Score: 134
Period size: 49 Copynumber: 3.7 Consensus size: 48
48177148 TAAGAATATT
** * * * *
48177158 AACTATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAAAA
1 AACTATTTTGTA-TCAAATAAATAAAATAAAATCAAAATATTCAAAATA
** * * * * *
48177207 AACTATTTTGTATTTTATTACATCAAATTATATCAAAATATTCAAAATA
1 AACTATTTTGTA-TCAAATAAATAAAATAAAATCAAAATATTCAAAATA
* ** * * * *
48177256 AATTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTA-TCAAATAAATAAAATAAAATCAAAATATTCAAAATA
48177305 AACTATTTTGTA-CAAATAAATTAAAATAAAAATCAA
1 AACTATTTTGTATCAAATAAA-TAAAAT-AAAATCAA
48177341 TCTTCGTGCC
Statistics
Matches: 119, Mismatches: 13, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
47 4 0.03
48 5 0.04
49 110 0.92
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (48 bp):
AACTATTTTGTATCAAATAAATAAAATAAAATCAAAATATTCAAAATA
Found at i:48177340 original size:98 final size:97
Alignment explanation
Indices: 48177161--48177340 Score: 236
Period size: 98 Copynumber: 1.8 Consensus size: 97
48177151 GAATATTAAC
* ** *
48177161 TATTTTGTATTTTATTAAATGAAATAATATCAAAATATTCAAAAAAAACTATTTTGTATTTTATT
1 TATTTTGTATTTTATTAAATCAAATAATATCAAAATATTCAAAAAAAACTATTTTGTA-TCAAAT
* * * *
48177226 ACATCAAATTATATCAAAATATTCAAAATAAAT
65 AAATAAAATAAAATCAAAATATTCAAAATAAAT
* *
48177259 TATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATAAACTATTTTGTA-CAAATA
1 TATTTTGTATTTTATTAAATCAAATAATATCAAAATATTCAAAAAAAACTATTTTGTATCAAATA
48177323 AATTAAAATAAAAATCAA
66 AA-TAAAAT-AAAATCAA
48177341 TCTTCGTGCC
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
96 4 0.06
97 5 0.07
98 61 0.87
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (97 bp):
TATTTTGTATTTTATTAAATCAAATAATATCAAAATATTCAAAAAAAACTATTTTGTATCAAATA
AATAAAATAAAATCAAAATATTCAAAATAAAT
Found at i:48179569 original size:11 final size:11
Alignment explanation
Indices: 48179555--48179598 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
48179545 TAAATAGGAC
*
48179555 TTTGATAGAAA
1 TTTGAGAGAAA
48179566 TTTGAGAGAATA
1 TTTGAGAGAA-A
*
48179578 TTAGAGAGAAA
1 TTTGAGAGAAA
48179589 -TTGAGAGAAA
1 TTTGAGAGAAA
48179599 GGATTTAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.31
11 10 0.34
12 10 0.34
ACGTcount: A:0.48, C:0.00, G:0.25, T:0.27
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:48180540 original size:33 final size:33
Alignment explanation
Indices: 48180486--48180551 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
48180476 GGTAAGACAT
48180486 TTTCCACAACTCATCTCTTCACTCTCTTCACCC
1 TTTCCACAACTCATCTCTTCACTCTCTTCACCC
* * *
48180519 TTTCCACAGCTCCTCTTTTCACTCTCTTCACCC
1 TTTCCACAACTCATCTCTTCACTCTCTTCACCC
48180552 AAACGATTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.15, C:0.45, G:0.02, T:0.38
Consensus pattern (33 bp):
TTTCCACAACTCATCTCTTCACTCTCTTCACCC
Found at i:48180996 original size:33 final size:33
Alignment explanation
Indices: 48180942--48181008 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
48180932 GGTAAGACAT
*
48180942 TTTCCACAGCTCATCTCTTCACTCTCTTCACCC
1 TTTCCACAACTCATCTCTTCACTCTCTTCACCC
* *
48180975 TTTCCACAACTCCTCTTTTCACTCTCTTCACCC
1 TTTCCACAACTCATCTCTTCACTCTCTTCACCC
48181008 T
1 T
48181009 AACGATTACA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.15, C:0.45, G:0.01, T:0.39
Consensus pattern (33 bp):
TTTCCACAACTCATCTCTTCACTCTCTTCACCC
Found at i:48182603 original size:14 final size:15
Alignment explanation
Indices: 48182581--48182657 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
48182571 CAATCAAACA
48182581 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
48182595 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
48182610 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
48182630 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
48182644 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
48182658 ATTGGCAATT
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:48182622 original size:20 final size:20
Alignment explanation
Indices: 48182597--48182636 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
48182587 AATATTTTCC
*
48182597 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
48182617 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
48182637 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:48182642 original size:34 final size:35
Alignment explanation
Indices: 48182585--48182651 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
48182575 CAAACACCAG
*
48182585 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
48182620 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
48182652 CATTTTATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:48183213 original size:29 final size:28
Alignment explanation
Indices: 48183181--48183242 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
48183171 AAAAGTCATT
48183181 TTTTTTCAAAATTTACCGAAATGGGCCAA
1 TTTTTTCAAAATTTACCGAAATGGGCC-A
* ** * *
48183210 TTTTTTGATTATTTACCGGAATGGTCCA
1 TTTTTTCAAAATTTACCGAAATGGGCCA
48183238 TTTTT
1 TTTTT
48183243 CCAGAAATCG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.45
Consensus pattern (28 bp):
TTTTTTCAAAATTTACCGAAATGGGCCA
Found at i:48183685 original size:125 final size:126
Alignment explanation
Indices: 48183463--48183800 Score: 572
Period size: 126 Copynumber: 2.7 Consensus size: 126
48183453 CGTCTCTGGT
* * * *
48183463 CAAATAGTATAAAATCGCTTCTACCAAGATGCTATTTGAGAAGAAATTGTGAAATTGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
48183528 TGGACGCAATTTTGCTACAGTAGGTCATGTAAGAAATAA-TTTTTTTCTGAT-TTTTCTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTT-TGAG
* *
48183588 CAAATAGTATAAAATCATTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCTTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
48183653 TGGACGCGGTTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTTTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTTTGAG
*
48183714 CAAATAGTATAAAATCGTTTCTACGAGAATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
48183779 TGGACGCGATTTTGCTACAGTA
66 TGGACGCGATTTTGCTACAGTA
48183801 TCAAGTTTGG
Statistics
Matches: 199, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
125 96 0.48
126 99 0.50
127 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (126 bp):
CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTTTGAG
Found at i:48184761 original size:26 final size:26
Alignment explanation
Indices: 48184728--48184784 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
48184718 TAAAGTGTTC
48184728 AAAATATGTAAAATTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
48184754 AAAATATGTAAAATTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
48184780 AAAAT
1 AAAAT
48184785 TTAGATTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (26 bp):
AAAATATGTAAAATTATTAAGCCAAA
Found at i:48184857 original size:34 final size:28
Alignment explanation
Indices: 48184782--48186830 Score: 2480
Period size: 28 Copynumber: 69.3 Consensus size: 28
48184772 AAGCCAAAAA
* * *
48184782 AATTTAGATTAGTTTAGAGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48184810 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
48184839 AATTTAGGCTAGATTA-GGTGTTTTAGTT
1 AATTTAGGTTAGATTAGGGT-TTTTAATT
* *
48184867 AATTTAGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
48184895 AATTTAGATTAGATTAGGGTTTGTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48184923 AATTTTAGGTTAGTTTTAGGGTTTTTAATT
1 AA-TTTAGGTTAG-ATTAGGGTTTTTAATT
*
48184953 AATTTTAGGTTAGGTTTAGGGTTTTTAATT
1 AA-TTTAGGTTA-GATTAGGGTTTTTAATT
* *
48184983 AATTTTAGGTTAGGTTTAGGGTTTTAAATT
1 AA-TTTAGGTTA-GATTAGGGTTTTTAATT
*
48185013 AATTTTAGGTTAGATTAGGGTTTTTAGTT
1 AA-TTTAGGTTAGATTAGGGTTTTTAATT
48185042 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
48185070 AATTTAGCTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
48185099 AATTTATGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48185127 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
48185155 AATTTAGCTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48185184 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48185212 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
48185240 AATTTAGCTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48185269 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185297 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
48185326 AATTTAGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185354 AATTTAGGTTTGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
** *
48185382 AATTTTAGGGCAGGTTTAGGGTTTTTAATT
1 AA-TTTAGGTTA-GATTAGGGTTTTTAATT
*
48185412 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48185440 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48185468 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48185496 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48185524 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185552 AATTTAGGTTAGGTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48185580 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185608 AATTTAGGTTAGGTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48185636 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185664 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48185693 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
48185722 AATTTAGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185750 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48185779 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* * **
48185808 AATTTAGGTTAGGTTTAGGTTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
48185837 AATTTAGGTTAGATTTAGGGTTTTTAATT
1 AATTTAGGTTAGA-TTAGGGTTTTTAATT
* **
48185866 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
48185895 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185923 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185951 AATTTATGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48185979 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48186007 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
48186035 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48186063 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48186092 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* * *
48186121 AATTTAGGTTAGGTTTGGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48186150 AATTTAAGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
48186178 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48186207 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
48186236 AATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
48186265 AATTTAGGTTAGGTTTAGATTAGGGTTTTTAATT
1 AA--T---TTAGG-TTAGATTAGGGTTTTTAATT
48186299 AAGTTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186333 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
** *
48186367 AAGCTAGGTTAGGGTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48186396 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
48186425 AATTTAGGTTAGGTTTAGATTAGGGTTTTTAATT
1 AA--T---TTAGG-TTAGATTAGGGTTTTTAATT
48186459 AAGTTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186493 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186527 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186561 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186595 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186629 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186663 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186697 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
48186731 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
** *
48186765 AAGCTAGGTTAGGGTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
48186794 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
48186823 AATTTAGG
1 AATTTAGG
48186831 GTAGGGTTAG
Statistics
Matches: 1876, Mismatches: 111, Indels: 67
0.91 0.05 0.03
Matches are distributed among these distances:
27 3 0.00
28 740 0.39
29 609 0.32
30 102 0.05
31 3 0.00
34 409 0.22
35 10 0.01
ACGTcount: A:0.26, C:0.01, G:0.25, T:0.49
Consensus pattern (28 bp):
AATTTAGGTTAGATTAGGGTTTTTAATT
Found at i:48184870 original size:57 final size:57
Alignment explanation
Indices: 48184782--48186841 Score: 2530
Period size: 57 Copynumber: 34.8 Consensus size: 57
48184772 AAGCCAAAAA
* * *
48184782 AATTTAGATTAGTTTAGAGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
48184839 AATTTAGGCTAGATTA-GGTGTTTTAGTTAATTTAGGTTAGG-TTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGT-TTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
48184895 AATTTAGATTAGATTAGGGTTTGTAATTAATTTTAGGTTAGTTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAA-TTTAGGTTAGGTTTAGGGTTTTTAATT
* *
48184953 AATTTTAGGTTAGGTTTAGGGTTTTTAATTAATTTTAGGTTAGGTTTAGGGTTTTAAATT
1 AA-TTTAGGTTA-GATTAGGGTTTTTAATTAA-TTTAGGTTAGGTTTAGGGTTTTTAATT
* *
48185013 AATTTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AA-TTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * * *
48185070 AATTTAGCTTAGGTTTAGGGTTTTTAATTAATTTATGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
48185127 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGCTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
48185184 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
48185240 AATTTAGCTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
48185297 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGG-TTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* **
48185354 AATTTAGGTTTGATTAGGGTTTTTAATTAATTTTAGGGCAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAA-TTTAGGTTAGGTTTAGGGTTTTTAATT
* *
48185412 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
48185468 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
48185524 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGG-TTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
48185580 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGG-TTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
48185636 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
48185693 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGG-TTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
48185750 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * ** *
48185808 AATTTAGGTTAGGTTTAGGTTTTTTTGTTAATTTAGGTTAGATTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* ** *
48185866 AATTTAGGTTAGGTTTAGGGTTTTTTGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
48185923 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTATGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
48185979 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
48186035 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
48186092 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTGGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
48186150 AATTTAAGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
48186207 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
48186265 AATTTAGGTTAGGTTTAGATTAGGGTTTTTAATTAAGTTAGGTTAGGGTTAGATTAGGGTTTTTA
1 AA--T---TTAGG-TTAGATTAGGGTTTTTAATTAATTTAGGTTA-GG-T---TTAGGGTTTTTA
48186330 ATT
55 ATT
** *
48186333 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATTAAGCTAGGTTAGGGTTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
48186396 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGG--T---TTAGGGTTTTTAATT
**
48186459 AAGTTAGGTTAGGGTTAGATTAGGGTTTTTAATTAAGCTAGGTTAGGGTTAGATTAGGGTTTTTA
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GG-T---TTAGGGTTTTTA
48186524 ATT
55 ATT
**
48186527 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATTAAGCTAGGTTAGGGTTAGATTAGGGTTTTTA
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GG-T---TTAGGGTTTTTA
48186592 ATT
55 ATT
**
48186595 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATTAAGCTAGGTTAGGGTTAGATTAGGGTTTTTA
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GG-T---TTAGGGTTTTTA
48186660 ATT
55 ATT
**
48186663 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATTAAGCTAGGTTAGGGTTAGATTAGGGTTTTTA
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GG-T---TTAGGGTTTTTA
48186728 ATT
55 ATT
** *
48186731 AAGCTAGGTTAGGGTTAGATTAGGGTTTTTAATTAAGCTAGGTTAGGGTTAGGGTTTTTAATT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
48186794 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGGTAGGGTTAGG
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGG
48186842 TTAGGGTTTT
Statistics
Matches: 1861, Mismatches: 97, Indels: 89
0.91 0.05 0.04
Matches are distributed among these distances:
56 472 0.25
57 487 0.26
58 368 0.20
59 25 0.01
60 56 0.03
61 2 0.00
63 82 0.04
64 5 0.00
65 2 0.00
67 4 0.00
68 349 0.19
69 9 0.00
ACGTcount: A:0.26, C:0.01, G:0.25, T:0.49
Consensus pattern (57 bp):
AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
Found at i:48185854 original size:11 final size:10
Alignment explanation
Indices: 48185410--48186275 Score: 91
Period size: 9 Copynumber: 91.3 Consensus size: 10
48185400 GGGTTTTTAA
48185410 TTAATTTAGG
1 TTAATTTAGG
48185420 TTAGA-TTAGGG
1 TTA-ATTTA-GG
48185431 TT--TTTA-G
1 TTAATTTAGG
48185438 TTAATTTAGG
1 TTAATTTAGG
48185448 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48185459 TT--TTTA-A
1 TTAATTTAGG
48185466 TTAATTTAGG
1 TTAATTTAGG
48185476 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48185487 TT--TTTA-A
1 TTAATTTAGG
48185494 TTAATTTAGG
1 TTAATTTAGG
48185504 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48185515 TT--TTTA-A
1 TTAATTTAGG
48185522 TTAATTTAGG
1 TTAATTTAGG
48185532 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48185543 TT--TTTA-A
1 TTAATTTAGG
48185550 TTAATTTAGG
1 TTAATTTAGG
**
48185560 TTAGGTTAGGG
1 TTAATTTA-GG
*
48185571 TT--TTTA-A
1 TTAATTTAGG
48185578 TTAATTTAGG
1 TTAATTTAGG
48185588 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48185599 TT--TTTA-A
1 TTAATTTAGG
48185606 TTAATTTAGG
1 TTAATTTAGG
**
48185616 TTAGGTTAGGG
1 TTAATTTA-GG
*
48185627 TT--TTTA-A
1 TTAATTTAGG
48185634 TTAATTTAGG
1 TTAATTTAGG
48185644 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48185655 TT--TTTA-A
1 TTAATTTAGG
48185662 TTAATTTAGG
1 TTAATTTAGG
*
48185672 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48185684 TT--TTTA-A
1 TTAATTTAGG
48185691 TTAATTTAGG
1 TTAATTTAGG
*
48185701 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48185713 TT--TTTA-A
1 TTAATTTAGG
48185720 TTAATTTAGG
1 TTAATTTAGG
**
48185730 TTAGGTTAGGG
1 TTAATTTA-GG
48185741 TT--TTTA-G
1 TTAATTTAGG
48185748 TTAATTTAGG
1 TTAATTTAGG
*
48185758 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48185770 TT--TTTA-A
1 TTAATTTAGG
48185777 TTAATTTAGG
1 TTAATTTAGG
*
48185787 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48185799 TT--TTTA-A
1 TTAATTTAGG
48185806 TTAATTTAGG
1 TTAATTTAGG
*
48185816 TTAGGTTTAGG
1 TTA-ATTTAGG
**
48185827 TT--TTTTTG
1 TTAATTTAGG
48185835 TTAATTTAGG
1 TTAATTTAGG
48185845 TTAGATTTAGGG
1 TTA-ATTTA-GG
*
48185857 TT--TTTA-A
1 TTAATTTAGG
48185864 TTAATTTAGG
1 TTAATTTAGG
*
48185874 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48185886 TT--TTT-TG
1 TTAATTTAGG
48185893 TTAATTTAGG
1 TTAATTTAGG
48185903 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48185914 TT--TTTA-A
1 TTAATTTAGG
48185921 TTAATTTAGG
1 TTAATTTAGG
48185931 TTAGA-TTAGGG
1 TTA-ATTTA-GG
48185942 TT--TTTA-G
1 TTAATTTAGG
*
48185949 TTAATTTATG
1 TTAATTTAGG
48185959 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48185970 TT--TTTA-A
1 TTAATTTAGG
48185977 TTAATTTAGG
1 TTAATTTAGG
48185987 TTAGA-TTAGGG
1 TTA-ATTTA-GG
48185998 TT--TTTA-G
1 TTAATTTAGG
48186005 TTAATTTAGG
1 TTAATTTAGG
48186015 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48186026 TT--TTTA-A
1 TTAATTTAGG
48186033 TTAATTTAGG
1 TTAATTTAGG
48186043 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48186054 TT--TTTA-A
1 TTAATTTAGG
48186061 TTAATTTAGG
1 TTAATTTAGG
*
48186071 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48186083 TT--TTTA-A
1 TTAATTTAGG
48186090 TTAATTTAGG
1 TTAATTTAGG
*
48186100 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48186112 TT--TTTA-A
1 TTAATTTAGG
48186119 TTAATTTAGG
1 TTAATTTAGG
* *
48186129 TTAGGTTTGGGG
1 TTA-ATTT-AGG
48186141 TT--TTTA-G
1 TTAATTTAGG
*
48186148 TTAATTTAAG
1 TTAATTTAGG
48186158 TTAGA-TTAGGG
1 TTA-ATTTA-GG
*
48186169 TT--TTTA-A
1 TTAATTTAGG
48186176 TTAATTTAGG
1 TTAATTTAGG
*
48186186 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48186198 TT--TTTA-A
1 TTAATTTAGG
48186205 TTAATTTAGG
1 TTAATTTAGG
*
48186215 TTAGGTTTAGGG
1 TTA-ATTTA-GG
*
48186227 TT--TTTA-A
1 TTAATTTAGG
48186234 TTAATTTAGG
1 TTAATTTAGG
*
48186244 TTAGGTTTAGG
1 TTA-ATTTAGG
* *
48186255 TT-TTTTA-A
1 TTAATTTAGG
48186263 TTAATTTAGG
1 TTAATTTAGG
48186273 TTA
1 TTA
48186276 GGTTTAGATT
Statistics
Matches: 620, Mismatches: 79, Indels: 314
0.61 0.08 0.31
Matches are distributed among these distances:
7 62 0.10
8 8 0.01
9 212 0.34
10 154 0.25
11 140 0.23
12 44 0.07
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.51
Consensus pattern (10 bp):
TTAATTTAGG
Found at i:48186406 original size:23 final size:25
Alignment explanation
Indices: 48186346--48186437 Score: 80
Period size: 29 Copynumber: 3.4 Consensus size: 25
48186336 CTAGGTTAGG
* *
48186346 GTTAGATTAGGGTTTTTAATTAAGCTAG
1 GTTAGGTTAGGGTTTTTAATTAA--T-T
48186374 GTTAGGGTTAGGGTTTTTAATTAATTT
1 GTTA-GGTTAGGGTTTTTAATTAA-TT
48186401 AGGTTAGGTTTAGGGTTTTTAATTAA-T
1 --GTTAGG-TTAGGGTTTTTAATTAATT
48186428 -TTAGGTTAGG
1 GTTAGGTTAGG
48186438 TTTAGATTAG
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
23 5 0.09
24 5 0.09
27 1 0.02
28 7 0.12
29 39 0.68
ACGTcount: A:0.25, C:0.01, G:0.27, T:0.47
Consensus pattern (25 bp):
GTTAGGTTAGGGTTTTTAATTAATT
Found at i:48186804 original size:23 final size:25
Alignment explanation
Indices: 48186744--48186838 Score: 77
Period size: 29 Copynumber: 3.6 Consensus size: 25
48186734 CTAGGTTAGG
* *
48186744 GTTAGATTAGGGTTTTTAATTAAGCTAG
1 GTTAGGTTAGGGTTTTTAATTAA--T-T
48186772 GTTAGGGTTAGGGTTTTTAATTAATTT
1 GTTA-GGTTAGGGTTTTTAATTAA-TT
48186799 AGGTTAGGTTTAGGGTTTTTAATTAA-T
1 --GTTAGG-TTAGGGTTTTTAATTAATT
*
48186826 -TTAGGGTAGGGTT
1 GTTAGGTTAGGGTT
48186839 AGGTTAGGGT
Statistics
Matches: 59, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
23 7 0.12
24 5 0.08
27 1 0.02
28 7 0.12
29 39 0.66
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.46
Consensus pattern (25 bp):
GTTAGGTTAGGGTTTTTAATTAATT
Found at i:48187102 original size:24 final size:23
Alignment explanation
Indices: 48187070--48187126 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
48187060 CGGCGGCGGT
*
48187070 TGTTCTTCCTCTAGTGGTGATTG
1 TGTTCTTCCTCCAGTGGTGATTG
* *
48187093 TGTTCCTTCCTCCGGTGGTGGTTG
1 TGTT-CTTCCTCCAGTGGTGATTG
48187117 TGGTTCTTCC
1 T-GTTCTTCC
48187127 GGTTCGGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.14
24 22 0.76
25 3 0.10
ACGTcount: A:0.04, C:0.23, G:0.28, T:0.46
Consensus pattern (23 bp):
TGTTCTTCCTCCAGTGGTGATTG
Found at i:48187425 original size:18 final size:18
Alignment explanation
Indices: 48187381--48187426 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
48187371 TATTCGGAAA
* *
48187381 AGGATACATGTAAGGGTT
1 AGGATACATATAAGGGCT
*
48187399 AGGGTACATATAAGGGCT
1 AGGATACATATAAGGGCT
*
48187417 AGGAAACATA
1 AGGATACATA
48187427 CCTGGCATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:48188520 original size:31 final size:32
Alignment explanation
Indices: 48188485--48188550 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
48188475 GCCATTGATG
*
48188485 AAAATAT-AAAAAAATTTAAAATTATTTTAAA
1 AAAATATAAAAAAAAATTAAAATTATTTTAAA
*
48188516 AAAATATAAAAAAAAATTATAATTATTTTAAA
1 AAAATATAAAAAAAAATTAAAATTATTTTAAA
48188548 AAA
1 AAA
48188551 TGGATTTGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 7 0.22
32 25 0.78
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (32 bp):
AAAATATAAAAAAAAATTAAAATTATTTTAAA
Found at i:48188617 original size:22 final size:22
Alignment explanation
Indices: 48188556--48188624 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
48188546 AAAAATGGAT
48188556 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
** *
48188578 TT-A-A-AA--TTAAATATGAAA
1 TTGAGAGAATTTTGGA-AGGAAA
48188596 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
48188618 TTGAGAG
1 TTGAGAG
48188625 GATTAGAGAG
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
17 3 0.09
18 7 0.20
19 3 0.09
20 2 0.06
21 3 0.09
22 14 0.40
23 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:48204007 original size:25 final size:24
Alignment explanation
Indices: 48203970--48204018 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
48203960 TTGTAAATCA
48203970 GAAAAATATCTTT-AGAAATTTTCT
1 GAAAAATATCTTTAAG-AATTTTCT
*
48203994 GAAATAATCTCTTTAAGAATTTTCT
1 GAAA-AATATCTTTAAGAATTTTCT
48204019 CTTTGCAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 4 0.18
25 16 0.73
26 2 0.09
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (24 bp):
GAAAAATATCTTTAAGAATTTTCT
Found at i:48204282 original size:25 final size:26
Alignment explanation
Indices: 48204254--48204326 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 26
48204244 AGATAATCAC
*
48204254 TTAAA-TATTAAATTAATAAATACTA
1 TTAAACTATTAAATTAATAAATAATA
* *
48204279 TTAAGATAAGTATTAAATTAA-AATTAATA
1 TT---A-AACTATTAAATTAATAAATAATA
*
48204308 TTAAACTATTAAAATAATA
1 TTAAACTATTAAATTAATA
48204327 TTATTTTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
25 14 0.37
26 2 0.05
28 1 0.03
29 10 0.26
30 11 0.29
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (26 bp):
TTAAACTATTAAATTAATAAATAATA
Found at i:48204295 original size:37 final size:35
Alignment explanation
Indices: 48204239--48204329 Score: 103
Period size: 37 Copynumber: 2.5 Consensus size: 35
48204229 TTTATTTTAA
*
48204239 TATTAAGATAATCACTTAAATATTAAATTAATA-AATAC
1 TATTAAGATAAT-A-TTAAAT-TAAAATTAATATAA-AC
48204277 TATTAAGATAAGTATTAAATTAAAATTAATATTAAAC
1 TATTAAGATAA-TATTAAATTAAAATTAATA-TAAAC
*
48204314 TATTAAAATAATATTA
1 TATTAAGATAATATTA
48204330 TTTTTGGAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
36 15 0.31
37 18 0.38
38 14 0.29
39 1 0.02
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.38
Consensus pattern (35 bp):
TATTAAGATAATATTAAATTAAAATTAATATAAAC
Found at i:48217795 original size:41 final size:41
Alignment explanation
Indices: 48217744--48217864 Score: 127
Period size: 41 Copynumber: 3.0 Consensus size: 41
48217734 ACAAATCTTA
**
48217744 ATATGATACACCGGCACGAAGCCTGATAGGCATAAAGCCTG
1 ATATGATACACCGGCATAAAGCCTGATAGGCATAAAGCCTG
* * * * * *
48217785 ATATGGTACACCGGTATTAAGCCTGCTAGGCGTAAAACCTG
1 ATATGATACACCGGCATAAAGCCTGATAGGCATAAAGCCTG
* * *
48217826 ATATAATTCACCGGCATAAAGCCT-ACTAGGCACAAAGCC
1 ATATGATACACCGGCATAAAGCCTGA-TAGGCATAAAGCC
48217865 CGATTATCAC
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.34, C:0.25, G:0.21, T:0.20
Consensus pattern (41 bp):
ATATGATACACCGGCATAAAGCCTGATAGGCATAAAGCCTG
Found at i:48219403 original size:20 final size:20
Alignment explanation
Indices: 48219380--48219418 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
48219370 GTAATTCCCA
48219380 AAAAATATAATTTATTCTAT
1 AAAAATATAATTTATTCTAT
48219400 AAAAATATAATTTATTCTA
1 AAAAATATAATTTATTCTA
48219419 AGAAGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (20 bp):
AAAAATATAATTTATTCTAT
Found at i:48219975 original size:11 final size:11
Alignment explanation
Indices: 48219953--48219986 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
48219943 CTTCAATTAT
48219953 TTAATT-ATAA
1 TTAATTAATAA
48219963 TTAATTAATAA
1 TTAATTAATAA
48219974 TTAATTAATAA
1 TTAATTAATAA
48219985 TT
1 TT
48219987 CAAAAACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 6 0.26
11 17 0.74
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTAATTAATAA
Found at i:48222376 original size:12 final size:12
Alignment explanation
Indices: 48222361--48222393 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
48222351 CACAGCTTGG
48222361 CACACGGCCTAA
1 CACACGGCCTAA
*
48222373 CACACGGCCTGA
1 CACACGGCCTAA
48222385 CACACGGCC
1 CACACGGCC
48222394 GTGCGTGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.45, G:0.21, T:0.06
Consensus pattern (12 bp):
CACACGGCCTAA
Found at i:48222377 original size:24 final size:24
Alignment explanation
Indices: 48222338--48222393 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
48222328 CTAGTGAGTT
** * *
48222338 ACACGGCCTAGTACACAGCTTGGC
1 ACACGGCCTAACACACAGCCTGAC
*
48222362 ACACGGCCTAACACACGGCCTGAC
1 ACACGGCCTAACACACAGCCTGAC
48222386 ACACGGCC
1 ACACGGCC
48222394 GTGCGTGGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.27, C:0.39, G:0.23, T:0.11
Consensus pattern (24 bp):
ACACGGCCTAACACACAGCCTGAC
Found at i:48224051 original size:38 final size:38
Alignment explanation
Indices: 48223979--48224094 Score: 115
Period size: 38 Copynumber: 3.1 Consensus size: 38
48223969 AACTTTAATT
* * * * *
48223979 ACACCAGCAATAAACCTACTAGGCACTAAGCCTGAATA
1 ACACCAGCACTAAGCATACTAGGCACAAAACCTGAATA
** * *
48224017 ACACTGGCACTAAGCATGCTAGGCACAAATCCTGAATA
1 ACACCAGCACTAAGCATACTAGGCACAAAACCTGAATA
* * * *
48224055 TCACCAGCACTAAGCCTACTATGCACAAAACTTGAATA
1 ACACCAGCACTAAGCATACTAGGCACAAAACCTGAATA
48224093 AC
1 AC
48224095 GATATAACTC
Statistics
Matches: 61, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.40, C:0.28, G:0.14, T:0.18
Consensus pattern (38 bp):
ACACCAGCACTAAGCATACTAGGCACAAAACCTGAATA
Found at i:48229754 original size:27 final size:27
Alignment explanation
Indices: 48229652--48229806 Score: 150
Period size: 27 Copynumber: 5.7 Consensus size: 27
48229642 ATCCTGTCAG
* * **
48229652 CCTTTGTGGCGTACTCTGAATGA-ATTG
1 CCTTTGTGGCATACTCTGTAT-ATATCA
48229679 CCTTTGTGGCATACTCTGTATATATCA
1 CCTTTGTGGCATACTCTGTATATATCA
* * *
48229706 CCTTTGTGGCATAATCTGTATATGTCG
1 CCTTTGTGGCATACTCTGTATATATCA
* * *
48229733 CCTTTGTGGTATACTCTCTATATATAA
1 CCTTTGTGGCATACTCTGTATATATCA
** **
48229760 CCTTTGTGGTGTACTCTGTATGGATCA
1 CCTTTGTGGCATACTCTGTATATATCA
* *
48229787 CCTTTGTGGCGTATTCTGTA
1 CCTTTGTGGCATACTCTGTA
48229807 ATAAGGACTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 106 0.99
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (27 bp):
CCTTTGTGGCATACTCTGTATATATCA
Found at i:48229778 original size:54 final size:55
Alignment explanation
Indices: 48229652--48229796 Score: 172
Period size: 54 Copynumber: 2.7 Consensus size: 55
48229642 ATCCTGTCAG
* * *
48229652 CCTTTGTGGCGTACTCTG-A-ATGAATTGCCTTTGTGGCATACTCTGTATATATCA
1 CCTTTGTGGCGTACTCTGTATATG-ATCGCCTTTGTGGCATACTCTCTATATATAA
* * *
48229706 CCTTTGTGGCATAATCTGTATATG-TCGCCTTTGTGGTATACTCTCTATATATAA
1 CCTTTGTGGCGTACTCTGTATATGATCGCCTTTGTGGCATACTCTCTATATATAA
* * *
48229760 CCTTTGTGGTGTACTCTGTAT-GGATCACCTTTGTGGC
1 CCTTTGTGGCGTACTCTGTATATGATCGCCTTTGTGGC
48229797 GTATTCTGTA
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 71 0.93
55 1 0.01
56 3 0.04
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.41
Consensus pattern (55 bp):
CCTTTGTGGCGTACTCTGTATATGATCGCCTTTGTGGCATACTCTCTATATATAA
Found at i:48231958 original size:15 final size:15
Alignment explanation
Indices: 48231938--48231971 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
48231928 ATCAATAATT
48231938 ATTTAAAAAATTAAA
1 ATTTAAAAAATTAAA
*
48231953 ATTTAAAAAATTATA
1 ATTTAAAAAATTAAA
48231968 ATTT
1 ATTT
48231972 TTTTTGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTTAAAAAATTAAA
Found at i:48239620 original size:16 final size:16
Alignment explanation
Indices: 48239599--48239633 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
48239589 AAAAAATTAA
48239599 TTAATTTTTATCATTT
1 TTAATTTTTATCATTT
*
48239615 TTAATTTTTATTATTT
1 TTAATTTTTATCATTT
48239631 TTA
1 TTA
48239634 TATAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TTAATTTTTATCATTT
Found at i:48239674 original size:18 final size:18
Alignment explanation
Indices: 48239653--48239692 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
48239643 AAAAATTTAT
*
48239653 ATTTTTAAATTGTTAACA
1 ATTTTTAAATTGTTAAAA
* *
48239671 ATTTTTTAATTTTTAAAA
1 ATTTTTAAATTGTTAAAA
48239689 ATTT
1 ATTT
48239693 AATTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTTTTAAATTGTTAAAA
Found at i:48241353 original size:20 final size:21
Alignment explanation
Indices: 48241314--48241353 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
48241304 ATACATGAGA
* *
48241314 ATATTTATATATATTTAAATG
1 ATATTTACATATATTAAAATG
48241335 ATATTTACA-ATATTAAAAT
1 ATATTTACATATATTAAAAT
48241354 ATTATATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (21 bp):
ATATTTACATATATTAAAATG
Found at i:48247094 original size:20 final size:21
Alignment explanation
Indices: 48247053--48247098 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
48247043 ACACGGTTTT
48247053 GCCACACAGGCCTGTGGGGAA
1 GCCACACAGGCCTGTGGGGAA
*
48247074 GCCACAC-GGCCATGT-GTGAA
1 GCCACACAGGCC-TGTGGGGAA
48247094 GCCAC
1 GCCAC
48247099 GTGGCCTGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.24, C:0.33, G:0.33, T:0.11
Consensus pattern (21 bp):
GCCACACAGGCCTGTGGGGAA
Found at i:48253406 original size:17 final size:18
Alignment explanation
Indices: 48253384--48253421 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
48253374 AACAATATAA
48253384 TAAGCACAATTAAAT-TT
1 TAAGCACAATTAAATATT
*
48253401 TAAGCACAATTCAATATT
1 TAAGCACAATTAAATATT
48253419 TAA
1 TAA
48253422 AACCACATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.34
Consensus pattern (18 bp):
TAAGCACAATTAAATATT
Found at i:48253798 original size:40 final size:41
Alignment explanation
Indices: 48253739--48253877 Score: 137
Period size: 41 Copynumber: 3.5 Consensus size: 41
48253729 ACATATCAGT
* *
48253739 TTGGCACCCAGTGCCTCATCGGATA-ATTCAAAGTAGTAAA
1 TTGGCACCCAGTGTCTCATCGGATATATCCAAAGTAGTAAA
** *
48253779 TTTTCACCCAGTGTCTCATCGAATATATCCAAAGTAGTAAA
1 TTGGCACCCAGTGTCTCATCGGATATATCCAAAGTAGTAAA
* * * *
48253820 TTGGCACCAAATGTCTCATCGG-T-TA---AACTGAAGTAAA
1 TTGGCACCCAGTGTCTCATCGGATATATCCAA-AGTAGTAAA
*
48253857 TTGGCACCCAGTGCCTCATCG
1 TTGGCACCCAGTGTCTCATCG
48253878 ACTAGAAGTC
Statistics
Matches: 82, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
36 2 0.02
37 25 0.30
39 2 0.02
40 22 0.27
41 31 0.38
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (41 bp):
TTGGCACCCAGTGTCTCATCGGATATATCCAAAGTAGTAAA
Found at i:48254908 original size:19 final size:20
Alignment explanation
Indices: 48254874--48254912 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
48254864 TAAACATATT
48254874 TATTAATATATACATATGTA
1 TATTAATATATACATATGTA
*
48254894 TATTAA-ATTTACATATGTA
1 TATTAATATATACATATGTA
48254913 ATCACTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (20 bp):
TATTAATATATACATATGTA
Found at i:48260953 original size:17 final size:18
Alignment explanation
Indices: 48260931--48260964 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
48260921 ATATAATAGA
48260931 CACAATTAAAT-TTTAAG
1 CACAATTAAATATTTAAG
*
48260948 CACAATTGAATATTTAA
1 CACAATTAAATATTTAA
48260965 AACCACATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (18 bp):
CACAATTAAATATTTAAG
Found at i:48262624 original size:27 final size:27
Alignment explanation
Indices: 48262594--48262869 Score: 291
Period size: 27 Copynumber: 10.2 Consensus size: 27
48262584 GGGTATAATA
*
48262594 GTCATTTTACCCAATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* **
48262621 GTCATTTTATCCTATAAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
48262648 ATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
48262675 GTCATTTTACCCTACGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
48262702 GTCATTTTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * ** * **
48262729 ATCATTTTACTCTACAGAGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
48262756 ATCATTTTATCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
48262783 GTTATTTTACCTTACGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
48262810 GTAATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
48262837 GTTATTTTACCCTACGGGCGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
48262864 GTCATT
1 GTCATT
48262870 CTATTGACCT
Statistics
Matches: 204, Mismatches: 45, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 204 1.00
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:48264184 original size:25 final size:25
Alignment explanation
Indices: 48264156--48264203 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
48264146 TAAATATTTT
*
48264156 GAAGTTTGT-TTGATGTAATAAAATA
1 GAAGTTT-TATTGATGTAAAAAAATA
48264181 GAAGTTTTATTGATGTAAAAAAA
1 GAAGTTTTATTGATGTAAAAAAA
48264204 ATTTAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (25 bp):
GAAGTTTTATTGATGTAAAAAAATA
Found at i:48264856 original size:25 final size:25
Alignment explanation
Indices: 48264828--48264875 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
48264818 TAAATATTTT
*
48264828 GAAGTTTGT-TTGATGTAATAAAATA
1 GAAGTTT-TATTGATGTAAAAAAATA
48264853 GAAGTTTTATTGATGTAAAAAAA
1 GAAGTTTTATTGATGTAAAAAAA
48264876 ATTTAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (25 bp):
GAAGTTTTATTGATGTAAAAAAATA
Found at i:48264914 original size:71 final size:71
Alignment explanation
Indices: 48264836--48265017 Score: 321
Period size: 71 Copynumber: 2.6 Consensus size: 71
48264826 TTGAAGTTTG
*
48264836 TTTGATGTAATAAAATAGAAGTTT-TATTGATGTAAAAAAAATTTAAAATTTTTTGAGTTATTTT
1 TTTGATGTAATAAAATAGAAGTTTAT-TTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTT
48264900 GATATTA
65 GATATTA
*
48264907 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTG
1 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTTG
48264972 ATATTA
66 ATATTA
*
48264978 CTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
1 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
48265018 TAGAAGTTTA
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
71 106 0.99
72 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.46
Consensus pattern (71 bp):
TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTTG
ATATTA
Found at i:48264938 original size:25 final size:25
Alignment explanation
Indices: 48264904--48265067 Score: 178
Period size: 25 Copynumber: 6.7 Consensus size: 25
48264894 TATTTTGATA
48264904 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
** *
48264929 TTATTTGATGTAATAAAAATTTAAAT
1 TTATTTGATGTAAT-AAAATAGAAGT
* ** *
48264955 TTTTTTGA-GT--T-ATTTTG-A-T
1 TTATTTGATGTAATAAAATAGAAGT
*
48264974 ATTACTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
48265000 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
48265025 TTATATGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
48265050 TTATTTGATGTGATAAAA
1 TTATTTGATGTAATAAAA
48265068 ATTGAAAACC
Statistics
Matches: 115, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.01
20 7 0.06
21 5 0.04
23 2 0.02
24 3 0.03
25 81 0.70
26 16 0.14
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:48265105 original size:23 final size:23
Alignment explanation
Indices: 48265069--48265208 Score: 226
Period size: 23 Copynumber: 6.1 Consensus size: 23
48265059 GTGATAAAAA
48265069 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
* *
48265092 TTGGAAACCATAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
* *
48265115 TTGAAAACCCTAACCTATTTAAA
1 TTGAAAACCCTAACCTAATTAAG
* *
48265138 TTAAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
48265161 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
48265184 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
48265207 TT
1 TT
48265209 TACCAATCCC
Statistics
Matches: 107, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 107 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.29
Consensus pattern (23 bp):
TTGAAAACCCTAACCTAATTAAG
Found at i:48265448 original size:678 final size:678
Alignment explanation
Indices: 48264529--48265883 Score: 2710
Period size: 678 Copynumber: 2.0 Consensus size: 678
48264519 AGCTCTCCTT
48264529 TTTACCAATCCCCAGCAACATATGGGTTACAAACACCCTCGCCCTTCGTGATGCAAACACCTCCA
1 TTTACCAATCCCCAGCAACATATGGGTTACAAACACCCTCGCCCTTCGTGATGCAAACACCTCCA
48264594 CATACACTATTCTTCGAAGGTGGATCATCGTCCCAAATCCGACAACCAGATGCCGTACCATAAGA
66 CATACACTATTCTTCGAAGGTGGATCATCGTCCCAAATCCGACAACCAGATGCCGTACCATAAGA
48264659 ACTAGAATCCTCGCTGAAGGAACAACGACCGCCGCCGGAAGCTAGAGAAAGGAGGAATCCAGCGC
131 ACTAGAATCCTCGCTGAAGGAACAACGACCGCCGCCGGAAGCTAGAGAAAGGAGGAATCCAGCGC
48264724 GTAACCGTCGACGGCCACCATGTGGCACTGAATCCCCCGGGCATAGACATTGATTGTCGTATTTA
196 GTAACCGTCGACGGCCACCATGTGGCACTGAATCCCCCGGGCATAGACATTGATTGTCGTATTTA
48264789 AAATTATTTTACAAATATTTTGAATATTTTAAATATTTTGAAGTTTGTTTGATGTAATAAAATAG
261 AAATTATTTTACAAATATTTTGAATATTTTAAATATTTTGAAGTTTGTTTGATGTAATAAAATAG
48264854 AAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATA
326 AAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATA
48264919 AAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTGATATTACTTGAT
391 AAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTGATATTACTTGAT
48264984 GTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGTTTATATGATGTAATAAAATAGAAG
456 GTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGTTTATATGATGTAATAAAATAGAAG
48265049 TTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATTAAGTTGGAAACCATAACCTAATTAA
521 TTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATTAAGTTGGAAACCATAACCTAATTAA
48265114 GTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCTATTTAAGTTGAAAACCCTAACCTAA
586 GTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCTATTTAAGTTGAAAACCCTAACCTAA
48265179 TTAAGTTGAAAACCCTAACCTAATTAAG
651 TTAAGTTGAAAACCCTAACCTAATTAAG
48265207 TTTACCAATCCCCAGCAACATATGGGTTACAAACACCCTCGCCCTTCGTGATGCAAACACCTCCA
1 TTTACCAATCCCCAGCAACATATGGGTTACAAACACCCTCGCCCTTCGTGATGCAAACACCTCCA
48265272 CATACACTATTCTTCGAAGGTGGATCATCGTCCCAAATCCGACAACCAGATGCCGTACCATAAGA
66 CATACACTATTCTTCGAAGGTGGATCATCGTCCCAAATCCGACAACCAGATGCCGTACCATAAGA
48265337 ACTAGAATCCTCGCTGAAGGAACAACGACCGCCGCCGGAAGCTAGAGAAAGGAGGAATCCAGCGC
131 ACTAGAATCCTCGCTGAAGGAACAACGACCGCCGCCGGAAGCTAGAGAAAGGAGGAATCCAGCGC
48265402 GTAACCGTCGACGGCCACCATGTGGCACTGAATCCCCCGGGCATAGACATTGATTGTCGTATTTA
196 GTAACCGTCGACGGCCACCATGTGGCACTGAATCCCCCGGGCATAGACATTGATTGTCGTATTTA
48265467 AAATTATTTTACAAATATTTTGAATATTTTAAATATTTTGAAGTTTGTTTGATGTAATAAAATAG
261 AAATTATTTTACAAATATTTTGAATATTTTAAATATTTTGAAGTTTGTTTGATGTAATAAAATAG
48265532 AAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATA
326 AAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATA
48265597 AAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTGATATTACTTGAT
391 AAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTGATATTACTTGAT
48265662 GTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGTTTATATGATGTAATAAAATAGAAG
456 GTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGTTTATATGATGTAATAAAATAGAAG
48265727 TTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATTAAGTTGGAAACCATAACCTAATTAA
521 TTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATTAAGTTGGAAACCATAACCTAATTAA
48265792 GTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCTATTTAAGTTGAAAACCCTAACCTAA
586 GTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCTATTTAAGTTGAAAACCCTAACCTAA
48265857 TTAAGTTGAAAACCCTAACCTAATTAA
651 TTAAGTTGAAAACCCTAACCTAATTAA
48265884 ATTAAGAACC
Statistics
Matches: 677, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
678 677 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (678 bp):
TTTACCAATCCCCAGCAACATATGGGTTACAAACACCCTCGCCCTTCGTGATGCAAACACCTCCA
CATACACTATTCTTCGAAGGTGGATCATCGTCCCAAATCCGACAACCAGATGCCGTACCATAAGA
ACTAGAATCCTCGCTGAAGGAACAACGACCGCCGCCGGAAGCTAGAGAAAGGAGGAATCCAGCGC
GTAACCGTCGACGGCCACCATGTGGCACTGAATCCCCCGGGCATAGACATTGATTGTCGTATTTA
AAATTATTTTACAAATATTTTGAATATTTTAAATATTTTGAAGTTTGTTTGATGTAATAAAATAG
AAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATA
AAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTGATATTACTTGAT
GTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAGTTTATATGATGTAATAAAATAGAAG
TTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATTAAGTTGGAAACCATAACCTAATTAA
GTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCTATTTAAGTTGAAAACCCTAACCTAA
TTAAGTTGAAAACCCTAACCTAATTAAG
Found at i:48265534 original size:25 final size:25
Alignment explanation
Indices: 48265506--48265553 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
48265496 TAAATATTTT
*
48265506 GAAGTTTGT-TTGATGTAATAAAATA
1 GAAGTTT-TATTGATGTAAAAAAATA
48265531 GAAGTTTTATTGATGTAAAAAAA
1 GAAGTTTTATTGATGTAAAAAAA
48265554 ATTTAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (25 bp):
GAAGTTTTATTGATGTAAAAAAATA
Found at i:48265592 original size:71 final size:71
Alignment explanation
Indices: 48265514--48265695 Score: 321
Period size: 71 Copynumber: 2.6 Consensus size: 71
48265504 TTGAAGTTTG
*
48265514 TTTGATGTAATAAAATAGAAGTTT-TATTGATGTAAAAAAAATTTAAAATTTTTTGAGTTATTTT
1 TTTGATGTAATAAAATAGAAGTTTAT-TTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTT
48265578 GATATTA
65 GATATTA
*
48265585 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTG
1 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTTG
48265650 ATATTA
66 ATATTA
*
48265656 CTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
1 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
48265696 TAGAAGTTTA
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
71 106 0.99
72 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.46
Consensus pattern (71 bp):
TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTTG
ATATTA
Found at i:48265616 original size:25 final size:25
Alignment explanation
Indices: 48265582--48265745 Score: 178
Period size: 25 Copynumber: 6.7 Consensus size: 25
48265572 TATTTTGATA
48265582 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
** *
48265607 TTATTTGATGTAATAAAAATTTAAAT
1 TTATTTGATGTAAT-AAAATAGAAGT
* ** *
48265633 TTTTTTGA-GT--T-ATTTTG-A-T
1 TTATTTGATGTAATAAAATAGAAGT
*
48265652 ATTACTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
48265678 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
48265703 TTATATGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
48265728 TTATTTGATGTGATAAAA
1 TTATTTGATGTAATAAAA
48265746 ATTGAAAACC
Statistics
Matches: 115, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.01
20 7 0.06
21 5 0.04
23 2 0.02
24 3 0.03
25 81 0.70
26 16 0.14
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:48265783 original size:23 final size:23
Alignment explanation
Indices: 48265747--48265968 Score: 356
Period size: 23 Copynumber: 9.7 Consensus size: 23
48265737 GTGATAAAAA
48265747 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
* *
48265770 TTGGAAACCATAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
* *
48265793 TTGAAAACCCTAACCTATTTAAA
1 TTGAAAACCCTAACCTAATTAAG
* *
48265816 TTAAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
48265839 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
48265862 TTGAAAACCCTAACCTAATTAAA
1 TTGAAAACCCTAACCTAATTAAG
*
48265885 TT-AAGAACCCTAACCTATTTAAG
1 TTGAA-AACCCTAACCTAATTAAG
48265908 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
48265931 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
48265954 TTGAAAACCCTAACC
1 TTGAAAACCCTAACC
48265969 CTAAACTTAA
Statistics
Matches: 183, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
22 2 0.01
23 179 0.98
24 2 0.01
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TTGAAAACCCTAACCTAATTAAG
Found at i:48266320 original size:25 final size:25
Alignment explanation
Indices: 48266292--48266339 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
48266282 TAAATATTTT
*
48266292 GAAGTTTGT-TTGATGTAATAAAATA
1 GAAGTTT-TATTGATGTAAAAAAATA
48266317 GAAGTTTTATTGATGTAAAAAAA
1 GAAGTTTTATTGATGTAAAAAAA
48266340 ATTTAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (25 bp):
GAAGTTTTATTGATGTAAAAAAATA
Found at i:48266339 original size:786 final size:786
Alignment explanation
Indices: 48265442--48267013 Score: 3144
Period size: 786 Copynumber: 2.0 Consensus size: 786
48265432 AATCCCCCGG
48265442 GCATAGACATTGATTGTCGTATTTAAAATTATTTTACAAATATTTTGAATATTTTAAATATTTTG
1 GCATAGACATTGATTGTCGTATTTAAAATTATTTTACAAATATTTTGAATATTTTAAATATTTTG
48265507 AAGTTTGTTTGATGTAATAAAATAGAAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGT
66 AAGTTTGTTTGATGTAATAAAATAGAAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGT
48265572 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTT
131 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTT
48265637 TTGAGTTATTTTGATATTACTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAG
196 TTGAGTTATTTTGATATTACTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAG
48265702 TTTATATGATGTAATAAAATAGAAGTTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATT
261 TTTATATGATGTAATAAAATAGAAGTTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATT
48265767 AAGTTGGAAACCATAACCTAATTAAGTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCT
326 AAGTTGGAAACCATAACCTAATTAAGTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCT
48265832 ATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAATTAAGAACCCTA
391 ATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAATTAAGAACCCTA
48265897 ACCTATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAAC
456 ACCTATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAAC
48265962 CCTAACCCTAAACTTAAAAACCCTAATAATTTGTCATTCACGTAATATTAGATTTGGAAAAATGT
521 CCTAACCCTAAACTTAAAAACCCTAATAATTTGTCATTCACGTAATATTAGATTTGGAAAAATGT
48266027 TTTCACTGGTAGTAACAATTAATAATTTTATATAATTTGACAATTAATAAAATTTTTCGGATAAT
586 TTTCACTGGTAGTAACAATTAATAATTTTATATAATTTGACAATTAATAAAATTTTTCGGATAAT
48266092 AATTTGTCATTCACATAATGTTAGATTTGGAAAAAAAAATTCACTCGTACTATCCTCTAACCTAA
651 AATTTGTCATTCACATAATGTTAGATTTGGAAAAAAAAATTCACTCGTACTATCCTCTAACCTAA
48266157 TTTTTTATGATTTGAAATATTTACCAACCATTAATACAATTTATCAATTAATAATTTCACAAACT
716 TTTTTTATGATTTGAAATATTTACCAACCATTAATACAATTTATCAATTAATAATTTCACAAACT
48266222 TAATTT
781 TAATTT
48266228 GCATAGACATTGATTGTCGTATTTAAAATTATTTTACAAATATTTTGAATATTTTAAATATTTTG
1 GCATAGACATTGATTGTCGTATTTAAAATTATTTTACAAATATTTTGAATATTTTAAATATTTTG
48266293 AAGTTTGTTTGATGTAATAAAATAGAAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGT
66 AAGTTTGTTTGATGTAATAAAATAGAAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGT
48266358 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTT
131 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTT
48266423 TTGAGTTATTTTGATATTACTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAG
196 TTGAGTTATTTTGATATTACTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAG
48266488 TTTATATGATGTAATAAAATAGAAGTTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATT
261 TTTATATGATGTAATAAAATAGAAGTTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATT
48266553 AAGTTGGAAACCATAACCTAATTAAGTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCT
326 AAGTTGGAAACCATAACCTAATTAAGTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCT
48266618 ATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAATTAAGAACCCTA
391 ATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAATTAAGAACCCTA
48266683 ACCTATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAAC
456 ACCTATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAAC
48266748 CCTAACCCTAAACTTAAAAACCCTAATAATTTGTCATTCACGTAATATTAGATTTGGAAAAATGT
521 CCTAACCCTAAACTTAAAAACCCTAATAATTTGTCATTCACGTAATATTAGATTTGGAAAAATGT
48266813 TTTCACTGGTAGTAACAATTAATAATTTTATATAATTTGACAATTAATAAAATTTTTCGGATAAT
586 TTTCACTGGTAGTAACAATTAATAATTTTATATAATTTGACAATTAATAAAATTTTTCGGATAAT
48266878 AATTTGTCATTCACATAATGTTAGATTTGGAAAAAAAAATTCACTCGTACTATCCTCTAACCTAA
651 AATTTGTCATTCACATAATGTTAGATTTGGAAAAAAAAATTCACTCGTACTATCCTCTAACCTAA
48266943 TTTTTTATGATTTGAAATATTTACCAACCATTAATACAATTTATCAATTAATAATTTCACAAACT
716 TTTTTTATGATTTGAAATATTTACCAACCATTAATACAATTTATCAATTAATAATTTCACAAACT
48267008 TAATTT
781 TAATTT
48267014 TTTTTACAAT
Statistics
Matches: 786, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
786 786 1.00
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (786 bp):
GCATAGACATTGATTGTCGTATTTAAAATTATTTTACAAATATTTTGAATATTTTAAATATTTTG
AAGTTTGTTTGATGTAATAAAATAGAAGTTTTATTGATGTAAAAAAAATTTAAAATTTTTTGAGT
TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTT
TTGAGTTATTTTGATATTACTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAG
TTTATATGATGTAATAAAATAGAAGTTTATTTGATGTGATAAAAATTGAAAACCCTAACCTAATT
AAGTTGGAAACCATAACCTAATTAAGTTGAAAACCCTAACCTATTTAAATTAAAAACCCTAACCT
ATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAATTAAGAACCCTA
ACCTATTTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAACCCTAACCTAATTAAGTTGAAAAC
CCTAACCCTAAACTTAAAAACCCTAATAATTTGTCATTCACGTAATATTAGATTTGGAAAAATGT
TTTCACTGGTAGTAACAATTAATAATTTTATATAATTTGACAATTAATAAAATTTTTCGGATAAT
AATTTGTCATTCACATAATGTTAGATTTGGAAAAAAAAATTCACTCGTACTATCCTCTAACCTAA
TTTTTTATGATTTGAAATATTTACCAACCATTAATACAATTTATCAATTAATAATTTCACAAACT
TAATTT
Found at i:48266378 original size:71 final size:71
Alignment explanation
Indices: 48266300--48266481 Score: 321
Period size: 71 Copynumber: 2.6 Consensus size: 71
48266290 TTGAAGTTTG
*
48266300 TTTGATGTAATAAAATAGAAGTTT-TATTGATGTAAAAAAAATTTAAAATTTTTTGAGTTATTTT
1 TTTGATGTAATAAAATAGAAGTTTAT-TTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTT
48266364 GATATTA
65 GATATTA
*
48266371 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAATTTTTTTGAGTTATTTTG
1 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTTG
48266436 ATATTA
66 ATATTA
*
48266442 CTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
1 TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAA
48266482 TAGAAGTTTA
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
71 106 0.99
72 1 0.01
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.46
Consensus pattern (71 bp):
TTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAAATTTAAAATTTTTTGAGTTATTTTG
ATATTA
Found at i:48266402 original size:25 final size:25
Alignment explanation
Indices: 48266368--48266531 Score: 178
Period size: 25 Copynumber: 6.7 Consensus size: 25
48266358 TATTTTGATA
48266368 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
** *
48266393 TTATTTGATGTAATAAAAATTTAAAT
1 TTATTTGATGTAAT-AAAATAGAAGT
* ** *
48266419 TTTTTTGA-GT--T-ATTTTG-A-T
1 TTATTTGATGTAATAAAATAGAAGT
*
48266438 ATTACTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
48266464 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
48266489 TTATATGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
48266514 TTATTTGATGTGATAAAA
1 TTATTTGATGTAATAAAA
48266532 ATTGAAAACC
Statistics
Matches: 115, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.01
20 7 0.06
21 5 0.04
23 2 0.02
24 3 0.03
25 81 0.70
26 16 0.14
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.43
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:48266569 original size:23 final size:23
Alignment explanation
Indices: 48266533--48266754 Score: 356
Period size: 23 Copynumber: 9.7 Consensus size: 23
48266523 GTGATAAAAA
48266533 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
* *
48266556 TTGGAAACCATAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
* *
48266579 TTGAAAACCCTAACCTATTTAAA
1 TTGAAAACCCTAACCTAATTAAG
* *
48266602 TTAAAAACCCTAACCTATTTAAG
1 TTGAAAACCCTAACCTAATTAAG
48266625 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
*
48266648 TTGAAAACCCTAACCTAATTAAA
1 TTGAAAACCCTAACCTAATTAAG
*
48266671 TT-AAGAACCCTAACCTATTTAAG
1 TTGAA-AACCCTAACCTAATTAAG
48266694 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
48266717 TTGAAAACCCTAACCTAATTAAG
1 TTGAAAACCCTAACCTAATTAAG
48266740 TTGAAAACCCTAACC
1 TTGAAAACCCTAACC
48266755 CTAAACTTAA
Statistics
Matches: 183, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
22 2 0.01
23 179 0.98
24 2 0.01
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TTGAAAACCCTAACCTAATTAAG
Found at i:48270376 original size:123 final size:123
Alignment explanation
Indices: 48270029--48270364 Score: 611
Period size: 123 Copynumber: 2.7 Consensus size: 123
48270019 CGAGTCCCCA
48270029 AGGGCGCGATTTTCACAAA-TTCTTCTCAAATAGCATCTTGCTAGAAGCGAATTTATACTATTTG
1 AGGGCGCGA-TTTCA-AAATTTCTTCTCAAATAGCATCTTGCTAGAAGCGAATTTATACTATTTG
48270093 CTCAGAAACGTCAAAAAAAATATTTCATCCATGACCTACTGTAGCAAGAGCGCGTCCATG
64 CTCAGAAACGTCAAAAAAAATATTTCATCCATGACCTACTGTAGCAAGAGCGCGTCCATG
48270153 AGGGCGCGATTTCAAAATTTCTTCTCAAATAGCATCTTGCTAGAAGCGAATTTATACTATTTGCT
1 AGGGCGCGATTTCAAAATTTCTTCTCAAATAGCATCTTGCTAGAAGCGAATTTATACTATTTGCT
48270218 CAGAAACGTCAAAAAAAATATTTCATCCATGACCTACTGTAGCAAGAGCGCGTCCATG
66 CAGAAACGTCAAAAAAAATATTTCATCCATGACCTACTGTAGCAAGAGCGCGTCCATG
* *
48270276 AGGGCGCGATTTCAAAATTTCTTCTCAAATAGCATCCTGCTAGAAGCGATTTTATACTATTTGCT
1 AGGGCGCGATTTCAAAATTTCTTCTCAAATAGCATCTTGCTAGAAGCGAATTTATACTATTTGCT
* *
48270341 CAGAAAGGTCAAAAAAATTATTTC
66 CAGAAACGTCAAAAAAAATATTTC
48270365 TTCCCGGACC
Statistics
Matches: 207, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
122 3 0.01
123 195 0.94
124 9 0.04
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (123 bp):
AGGGCGCGATTTCAAAATTTCTTCTCAAATAGCATCTTGCTAGAAGCGAATTTATACTATTTGCT
CAGAAACGTCAAAAAAAATATTTCATCCATGACCTACTGTAGCAAGAGCGCGTCCATG
Found at i:48270520 original size:14 final size:14
Alignment explanation
Indices: 48270501--48270529 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
48270491 ACGTCAGCGC
48270501 GATGTGCTGACTCA
1 GATGTGCTGACTCA
48270515 GATGTGCTGACTCA
1 GATGTGCTGACTCA
48270529 G
1 G
48270530 CACATCGCGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (14 bp):
GATGTGCTGACTCA
Found at i:48271522 original size:23 final size:24
Alignment explanation
Indices: 48271491--48271551 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
48271481 CATACATTAT
*
48271491 AAAAGAAAGAGAAA-G-ACAAAGAA
1 AAAAAAAAGAGAAAGGTACAAA-AA
* *
48271514 AAAAAAAAGGGAAAGGTAGAAAAA
1 AAAAAAAAGAGAAAGGTACAAAAA
*
48271538 AAAATAAAGAGAAA
1 AAAAAAAAGAGAAA
48271552 TAATATAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 12 0.39
24 15 0.48
25 4 0.13
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.03
Consensus pattern (24 bp):
AAAAAAAAGAGAAAGGTACAAAAA
Found at i:48271576 original size:7 final size:7
Alignment explanation
Indices: 48271566--48271604 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
48271556 ATAAAAGAAA
48271566 AAAAATT
1 AAAAATT
48271573 AAAAATT
1 AAAAATT
*
48271580 AAAAATAA
1 AAAAAT-T
48271588 AACAAATT
1 AA-AAATT
48271596 AAAAATT
1 AAAAATT
48271603 AA
1 AA
48271605 TTTTTAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 20 0.71
8 4 0.14
9 4 0.14
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:48271589 original size:23 final size:23
Alignment explanation
Indices: 48271558--48271604 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
48271548 GAAATAATAT
48271558 AAAAGAAAAAAAATTAAAAATTA
1 AAAAGAAAAAAAATTAAAAATTA
* *
48271581 AAAATAAAACAAATTAAAAATTA
1 AAAAGAAAAAAAATTAAAAATTA
48271604 A
1 A
48271605 TTTTTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (23 bp):
AAAAGAAAAAAAATTAAAAATTA
Found at i:48280516 original size:23 final size:25
Alignment explanation
Indices: 48280486--48280533 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
48280476 AAGGAAAGGT
*
48280486 AGATGAGAA-AGGAAACAA-TAGAG
1 AGATGAGAAGAGAAAACAATTAGAG
48280509 AGATGAGAAGAGAAAACAATTAGAG
1 AGATGAGAAGAGAAAACAATTAGAG
48280534 TATAACCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.41
24 8 0.36
25 5 0.23
ACGTcount: A:0.56, C:0.04, G:0.29, T:0.10
Consensus pattern (25 bp):
AGATGAGAAGAGAAAACAATTAGAG
Found at i:48282907 original size:43 final size:41
Alignment explanation
Indices: 48282849--48283003 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 41
48282839 TGTATTTTCA
48282849 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTATATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TTGTG-ATATG
* * * *
48282892 TGTAAGACCATGTCTGGGACATTGACATCGTATT-TGATTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ATTGTGATATG
* **
48282933 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATGTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCGAT-TGTGA-TATG
48282976 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
48283004 TGTACGAGCC
Statistics
Matches: 92, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
40 2 0.02
41 29 0.32
42 6 0.07
43 53 0.58
44 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTGTGATATG
Done.