Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 152 of 313
Found at i:48283193 original size:16 final size:17
Alignment explanation
Indices: 48283164--48283195 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
48283154 TGAATTGATG
48283164 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
48283181 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
48283196 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:48297133 original size:19 final size:20
Alignment explanation
Indices: 48297097--48297137 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 20
48297087 AAAGAACATA
48297097 TCAATTTCACATAATTCATTT
1 TCAATTTCACA-AATTCATTT
48297118 TCAATTTCAC-AATTCATTT
1 TCAATTTCACAAATTCATTT
48297137 T
1 T
48297138 TAATATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.50
21 10 0.50
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.49
Consensus pattern (20 bp):
TCAATTTCACAAATTCATTT
Found at i:48298040 original size:27 final size:28
Alignment explanation
Indices: 48298010--48298067 Score: 109
Period size: 27 Copynumber: 2.1 Consensus size: 28
48298000 ATACAATTGT
48298010 TTTATATAACCAAATCAATACCAAAA-A
1 TTTATATAACCAAATCAATACCAAAAGA
48298037 TTTATATAACCAAATCAATACCAAAAGA
1 TTTATATAACCAAATCAATACCAAAAGA
48298065 TTT
1 TTT
48298068 CATACTTTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 26 0.87
28 4 0.13
ACGTcount: A:0.52, C:0.17, G:0.02, T:0.29
Consensus pattern (28 bp):
TTTATATAACCAAATCAATACCAAAAGA
Found at i:48303842 original size:27 final size:27
Alignment explanation
Indices: 48303812--48303989 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48303802 ATATTGAGTC
* * * *
48303812 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
48303839 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48303866 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
48303894 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
48303921 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
48303948 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
48303975 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48303990 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:48303951 original size:82 final size:81
Alignment explanation
Indices: 48303833--48303988 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48303823 TGCTATATAA
* *
48303833 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
48303898 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
48303915 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
48303979 CACTTAGTGC
65 CACTTAGTGC
48303989 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48311904 original size:27 final size:27
Alignment explanation
Indices: 48311874--48312051 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
48311864 ATATTGAGCC
* *
48311874 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
48311901 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
48311928 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
48311956 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
48311983 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
48312010 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
48312037 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48312052 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:48311986 original size:55 final size:54
Alignment explanation
Indices: 48311874--48312051 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
48311864 ATATTGAGCC
* * * * *
48311874 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
48311928 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
48311983 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
48312037 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48312052 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:48324769 original size:16 final size:16
Alignment explanation
Indices: 48324750--48324780 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48324740 TGATTTTGGA
48324750 TATATATAAATATAAT
1 TATATATAAATATAAT
*
48324766 TATATGTAAATATAA
1 TATATATAAATATAA
48324781 AATTTAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
TATATATAAATATAAT
Found at i:48328145 original size:127 final size:127
Alignment explanation
Indices: 48327908--48328156 Score: 327
Period size: 127 Copynumber: 2.0 Consensus size: 127
48327898 TGACCTAGTA
* * *
48327908 AACCCCTTTTTGATAGAATCATCAATGTTTCATCAAACATAAAATCTCTACTAACGATGACCTTA
1 AACCCCTTTTTGACAAAATCATCAATGTTTCATCAAACATAAAATCTCTACCAACGATGACCTTA
* * * *
48327973 CTCATTTCTAAGCACTATAACTTATAGTCTTTTATCTAAACAGCAAAAACCAGAAAAATACG
66 CTCATTTCTAAGCACCATAACTTATAGCCGTTTATCCAAACAGCAAAAACCAGAAAAATACG
* ** * * *
48328035 AACCCCTTTTTGACAAAATCATCGATGTTTCATCAAATGTAACATCTCTACCGACGATGATCTTA
1 AACCCCTTTTTGACAAAATCATCAATGTTTCATCAAACATAAAATCTCTACCAACGATGACCTTA
* * * ** *
48328100 CTCGTTTCTAGGCACCATAACTTATAGCCGTTTATCCCAGTAGCAAAACCCAGAAAA
66 CTCATTTCTAAGCACCATAACTTATAGCCGTTTATCCAAACAGCAAAAACCAGAAAA
48328157 TACACTTCAT
Statistics
Matches: 103, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
127 103 1.00
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.30
Consensus pattern (127 bp):
AACCCCTTTTTGACAAAATCATCAATGTTTCATCAAACATAAAATCTCTACCAACGATGACCTTA
CTCATTTCTAAGCACCATAACTTATAGCCGTTTATCCAAACAGCAAAAACCAGAAAAATACG
Found at i:48330564 original size:23 final size:23
Alignment explanation
Indices: 48330537--48330583 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
48330527 CAAATAGAAA
48330537 AATAACATCCTACTTAGAATAGG
1 AATAACATCCTACTTAGAATAGG
48330560 AATAACATCCTACTTAGAATAGG
1 AATAACATCCTACTTAGAATAGG
48330583 A
1 A
48330584 CTAGAATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.45, C:0.17, G:0.13, T:0.26
Consensus pattern (23 bp):
AATAACATCCTACTTAGAATAGG
Found at i:48330797 original size:25 final size:25
Alignment explanation
Indices: 48330764--48330817 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
48330754 TAGGCTTTAT
*
48330764 TTTTCCCTTAGCAAAATTTTGACGA
1 TTTTACCTTAGCAAAATTTTGACGA
* *
48330789 TTTTACCTTGGTAAAATTTTGACGA
1 TTTTACCTTAGCAAAATTTTGACGA
48330814 TTTT
1 TTTT
48330818 GCCCATCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (25 bp):
TTTTACCTTAGCAAAATTTTGACGA
Found at i:48331530 original size:25 final size:25
Alignment explanation
Indices: 48331502--48331551 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
48331492 GACGGACGAC
48331502 CCGTGGCAACGTTTACTTTTCATCA
1 CCGTGGCAACGTTTACTTTTCATCA
48331527 CCGTGGCAACGTTTACTTTTCATCA
1 CCGTGGCAACGTTTACTTTTCATCA
48331552 ATCATGTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.36
Consensus pattern (25 bp):
CCGTGGCAACGTTTACTTTTCATCA
Found at i:48333995 original size:26 final size:26
Alignment explanation
Indices: 48333926--48334013 Score: 69
Period size: 26 Copynumber: 3.4 Consensus size: 26
48333916 TATTTCTTTG
*
48333926 TTTAATTTTTTAAAATTT-TAATATATTC
1 TTTAATTTTTT--AATTTCT-ATATATTT
* *
48333954 TTTGA-TTTCTATATTTCTATATATTT
1 TTTAATTTTTTA-ATTTCTATATATTT
48333980 TTTAATTTTTTAATTTCT-T-T-TTT
1 TTTAATTTTTTAATTTCTATATATTT
48334003 TTATAATTTTT
1 TT-TAATTTTT
48334014 AGATTTTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
23 5 0.10
24 9 0.18
25 2 0.04
26 21 0.41
27 10 0.20
28 4 0.08
ACGTcount: A:0.26, C:0.05, G:0.01, T:0.68
Consensus pattern (26 bp):
TTTAATTTTTTAATTTCTATATATTT
Found at i:48334019 original size:24 final size:21
Alignment explanation
Indices: 48333977--48334023 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
48333967 TTTCTATATA
*
48333977 TTTTTTAATTTTTTAATTTCTT
1 TTTTTTAAATTTTTAATTT-TT
48333999 TTTTTTATAATTTTTAGATTTTT
1 TTTTTTA-AATTTTTA-ATTTTT
48334022 TT
1 TT
48334024 AAATTTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 11 0.50
24 4 0.18
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTTTAAATTTTTAATTTTT
Found at i:48334509 original size:91 final size:92
Alignment explanation
Indices: 48334404--48334617 Score: 226
Period size: 93 Copynumber: 2.3 Consensus size: 92
48334394 GTTAAAAATT
** *
48334404 CTCAAACTTTTTCAAAAAAAGTAATTAAGCCCCTCTTTTC-TTTTTTT-ACTCAATTGAGCACTT
1 CTCAAACTTTTTCAAAAAAAGTAATTAAGCCCCTCTTGCCTTTTTTTTCACTCAATTGAGCACTA
*
48334467 GAACTTTCAAAATGCATAAAAAA-ATGCC
66 GAACTTTCAAAATGAATAAAAAAGA--CC
* * * * *
48334495 CTCAAACTTCTTCAAAAAAAAAAGCAATTAA---ACTCTTGCCTTTTTTTTCACTCAATTGGGTA
1 CTCAAACTTTTTC---AAAAAAAGTAATTAAGCCCCTCTTGCCTTTTTTTTCACTCAATTGAGCA
*
48334557 CTAGAACTTTCAAAATGAATCAAAAAGACC
63 CTAGAACTTTCAAAATGAATAAAAAAGACC
* *
48334587 TTCAAAATTTTTC-AAAAAAGTAATTAAGCCC
1 CTCAAACTTTTTCAAAAAAAGTAATTAAGCCC
48334618 AAACTTTTAT
Statistics
Matches: 99, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
88 13 0.13
91 18 0.18
92 19 0.19
93 34 0.34
94 15 0.15
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (92 bp):
CTCAAACTTTTTCAAAAAAAGTAATTAAGCCCCTCTTGCCTTTTTTTTCACTCAATTGAGCACTA
GAACTTTCAAAATGAATAAAAAAGACC
Found at i:48334714 original size:18 final size:18
Alignment explanation
Indices: 48334666--48334720 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
48334656 TAAATTTGAG
**
48334666 AAAATTATTAAATTTTAAT
1 AAAATTATTAAAAATT-AT
*
48334685 AAAAATA-T-AAAATTAT
1 AAAATTATTAAAAATTAT
48334701 AAAATTATTAAAAATTAT
1 AAAATTATTAAAAATTAT
48334719 AA
1 AA
48334721 TTTTTATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
16 8 0.27
17 5 0.17
18 11 0.37
19 6 0.20
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTATTAAAAATTAT
Found at i:48334716 original size:37 final size:37
Alignment explanation
Indices: 48334646--48334721 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
48334636 AGAAAAAACT
* *
48334646 ATAAAAATAATAAATTTGAGAAAATTATTAAATTTTA
1 ATAAAAATAATAAAATTGAGAAAATTATTAAATTATA
*
48334683 ATAAAAAT-ATAAAATT-ATAAAATTATTAAAAATTATA
1 ATAAAAATAATAAAATTGAGAAAATTATT--AAATTATA
48334720 AT
1 AT
48334722 TTTTATATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 10 0.29
36 7 0.21
37 17 0.50
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (37 bp):
ATAAAAATAATAAAATTGAGAAAATTATTAAATTATA
Found at i:48335119 original size:13 final size:13
Alignment explanation
Indices: 48335101--48335146 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
48335091 CATTAATCAA
48335101 TAATTATATTAAT
1 TAATTATATTAAT
48335114 TAATTAT-TCTAAT
1 TAATTATAT-TAAT
*
48335127 TAAATATA-TAAT
1 TAATTATATTAAT
*
48335139 TAAGTATA
1 TAATTATA
48335147 AAATTTTACC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 12 0.41
13 17 0.59
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (13 bp):
TAATTATATTAAT
Found at i:48335776 original size:24 final size:24
Alignment explanation
Indices: 48335749--48335800 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
48335739 AATCAAAGTC
* *
48335749 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
48335773 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
48335797 AAAT
1 AAAT
48335801 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:48336085 original size:18 final size:18
Alignment explanation
Indices: 48336062--48336100 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
48336052 TCACAAAGAG
*
48336062 CAGTAATCGCCATGTACT
1 CAGTAATCACCATGTACT
48336080 CAGTAATCACCATGTACT
1 CAGTAATCACCATGTACT
48336098 CAG
1 CAG
48336101 CTTCAGTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (18 bp):
CAGTAATCACCATGTACT
Found at i:48339980 original size:24 final size:24
Alignment explanation
Indices: 48339965--48340016 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
48339955 AATCAAAGTC
48339965 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
48339989 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
48340013 AAAT
1 AAAT
48340017 CATCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:48341267 original size:24 final size:24
Alignment explanation
Indices: 48341239--48341315 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
48341229 AATAATTTAA
48341239 ATAAAATACGCAAAGGTTTGAAAT
1 ATAAAATACGCAAAGGTTTGAAAT
** * *
48341263 ATAAAAATATCAATAAAAG--T-AAGT
1 AT-AAAATA-C-GCAAAGGTTTGAAAT
48341287 A-AAAATACGCAAAGGTTTGAAAT
1 ATAAAATACGCAAAGGTTTGAAAT
48341310 ATAAAA
1 ATAAAA
48341316 ATATCAATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
20 4 0.11
21 1 0.03
22 7 0.18
23 4 0.11
24 10 0.26
25 7 0.18
26 1 0.03
27 4 0.11
ACGTcount: A:0.57, C:0.06, G:0.13, T:0.23
Consensus pattern (24 bp):
ATAAAATACGCAAAGGTTTGAAAT
Found at i:48341293 original size:47 final size:47
Alignment explanation
Indices: 48341241--48341335 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
48341231 TAATTTAAAT
48341241 AAAATACGCAAAGGTTTGAAATATAAAAATATCAATAAAAGTAAGTA
1 AAAATACGCAAAGGTTTGAAATATAAAAATATCAATAAAAGTAAGTA
48341288 AAAATACGCAAAGGTTTGAAATATAAAAATATCAATAAAAGTAAGTA
1 AAAATACGCAAAGGTTTGAAATATAAAAATATCAATAAAAGTAAGTA
48341335 A
1 A
48341336 TAGGTGAATG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.58, C:0.06, G:0.13, T:0.23
Consensus pattern (47 bp):
AAAATACGCAAAGGTTTGAAATATAAAAATATCAATAAAAGTAAGTA
Found at i:48344138 original size:12 final size:12
Alignment explanation
Indices: 48344121--48344162 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
48344111 TTAACTTAAT
48344121 CGAACATGTTCA
1 CGAACATGTTCA
**
48344133 CGAACAT-TAAA
1 CGAACATGTTCA
48344144 CGAACATGTTCA
1 CGAACATGTTCA
*
48344156 TGAACAT
1 CGAACAT
48344163 ATATTTGAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
11 9 0.38
12 15 0.62
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.24
Consensus pattern (12 bp):
CGAACATGTTCA
Found at i:48344160 original size:23 final size:23
Alignment explanation
Indices: 48344097--48344162 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
48344087 TTTAATTTTC
*
48344097 ACGAACATGTTCAATTAAC-TTAA
1 ACGAACATGTTC-ATGAACATTAA
* *
48344120 TCGAACATGTTCACGAACATTAA
1 ACGAACATGTTCATGAACATTAA
48344143 ACGAACATGTTCATGAACAT
1 ACGAACATGTTCATGAACAT
48344163 ATATTTGAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 4 0.11
23 33 0.89
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (23 bp):
ACGAACATGTTCATGAACATTAA
Found at i:48350310 original size:8 final size:8
Alignment explanation
Indices: 48350297--48350383 Score: 90
Period size: 8 Copynumber: 10.6 Consensus size: 8
48350287 ATATACATAG
48350297 ATTTTATT
1 ATTTTATT
48350305 ATTTTATGT
1 ATTTTAT-T
*
48350314 TTTCTATGATT
1 ATT-T-T-ATT
*
48350325 ATTTTTTT
1 ATTTTATT
48350333 ATTTT-TT
1 ATTTTATT
48350340 ATTTT-TT
1 ATTTTATT
48350347 ATTTTATT
1 ATTTTATT
48350355 -TTTTATAT
1 ATTTTAT-T
48350363 ATTTTATT
1 ATTTTATT
48350371 ATTTTATT
1 ATTTTATT
48350379 ATTTT
1 ATTTT
48350384 TATTTATTCT
Statistics
Matches: 69, Mismatches: 3, Indels: 14
0.80 0.03 0.16
Matches are distributed among these distances:
7 20 0.29
8 31 0.45
9 10 0.14
10 2 0.03
11 4 0.06
12 2 0.03
ACGTcount: A:0.21, C:0.01, G:0.02, T:0.76
Consensus pattern (8 bp):
ATTTTATT
Found at i:48350339 original size:7 final size:7
Alignment explanation
Indices: 48350327--48350388 Score: 65
Period size: 7 Copynumber: 8.4 Consensus size: 7
48350317 CTATGATTAT
48350327 TTTTTTA
1 TTTTTTA
48350334 TTTTTTA
1 TTTTTTA
48350341 TTTTTTA
1 TTTTTTA
48350348 --TTTTA
1 TTTTTTA
48350353 TTTTTTA
1 TTTTTTA
48350360 TATATTTTA
1 T-T-TTTTA
48350369 TTATTTTA
1 TT-TTTTA
48350377 TTATTTTTA
1 -T-TTTTTA
48350386 TTT
1 TTT
48350389 ATTCTCATTA
Statistics
Matches: 49, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
5 5 0.10
7 22 0.45
8 9 0.18
9 12 0.24
10 1 0.02
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTTTTA
Found at i:48350344 original size:28 final size:27
Alignment explanation
Indices: 48350297--48350384 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 27
48350287 ATATACATAG
* * *
48350297 ATTTTATTATTTTATGTTTTCTATGATT
1 ATTTTTTTATTTTTTATTTTCTAT-ATT
* *
48350325 ATTTTTTTATTTTTTATTTTTTATTTT
1 ATTTTTTTATTTTTTATTTTCTATATT
*
48350352 ATTTTTTATATATTTTATTATT-T-TATT
1 ATTTTTT-TATTTTTTATT-TTCTATATT
48350379 ATTTTT
1 ATTTTT
48350385 ATTTATTCTC
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 18 0.35
28 31 0.61
29 2 0.04
ACGTcount: A:0.20, C:0.01, G:0.02, T:0.76
Consensus pattern (27 bp):
ATTTTTTTATTTTTTATTTTCTATATT
Found at i:48350782 original size:107 final size:107
Alignment explanation
Indices: 48350620--48350901 Score: 494
Period size: 107 Copynumber: 2.6 Consensus size: 107
48350610 TTTTTTTTTC
* * *
48350620 AAGGCAATGTTTTGCGTTTGGAAATTCGAGGAAACATGCCCTAATGTGCTGGGTTTCGATTTTCT
1 AAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
48350685 CGTTCGACAAAATAGCCAAATATCCTTTTAAAATTTTAAAAT
66 CGTTCGACAAAATAGCCAAATATCCTTTTAAAATTTTAAAAT
* *
48350727 AAGGCAATGTTTTGCATTTGGAAATTTAAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
1 AAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
48350792 CGTTCGACAAAATAGCCAAATATCCTTTTAAAATTTTAAAAT
66 CGTTCGACAAAATAGCCAAATATCCTTTTAAAATTTTAAAAT
* *
48350834 AAGGCAATGTTTTACGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTTCG-GTTTCT
1 AAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
48350898 CGTT
66 CGTT
48350902 GGACCGAATA
Statistics
Matches: 166, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
106 9 0.05
107 157 0.95
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (107 bp):
AAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
CGTTCGACAAAATAGCCAAATATCCTTTTAAAATTTTAAAAT
Found at i:48351867 original size:16 final size:16
Alignment explanation
Indices: 48351846--48351880 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
48351836 TGTTATTTTG
48351846 TTTTGACTGCATGGCA
1 TTTTGACTGCATGGCA
48351862 TTTTGACTGCATGGCA
1 TTTTGACTGCATGGCA
48351878 TTT
1 TTT
48351881 CATTTTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (16 bp):
TTTTGACTGCATGGCA
Found at i:48357009 original size:11 final size:11
Alignment explanation
Indices: 48356990--48357043 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
48356980 AATAACAAGG
48356990 AAGAAAAAAAGA
1 AAGAAAAAAA-A
*
48357002 AAAAAAAAGGAAA
1 AAGAAAAA--AAA
48357015 AAGAAAAAAAA
1 AAGAAAAAAAA
* *
48357026 AAGAAGAAGAA
1 AAGAAAAAAAA
48357037 AAGAAAA
1 AAGAAAA
48357044 CGAAAAGGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
11 18 0.51
12 7 0.20
13 8 0.23
14 2 0.06
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:48357017 original size:17 final size:17
Alignment explanation
Indices: 48356995--48357049 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 17
48356985 CAAGGAAGAA
*
48356995 AAAAAGAAAAAAAAAGG
1 AAAAAGAAAAAAAAAAG
48357012 AAAAAGAAAAAAAAAAG
1 AAAAAGAAAAAAAAAAG
* * *
48357029 AAGAAGAAAAGAAAACG
1 AAAAAGAAAAAAAAAAG
48357046 AAAA
1 AAAA
48357050 GGAGAGGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 33 1.00
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAAAAAG
Found at i:48357030 original size:28 final size:28
Alignment explanation
Indices: 48356993--48357049 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
48356983 AACAAGGAAG
48356993 AAAAAAAGAA-AAAAAAAGGAAAAAGAAA
1 AAAAAAAGAAGAAAAAAA-GAAAAAGAAA
* *
48357021 AAAAAAAGAAGAAGAAAAGAAAACGAAA
1 AAAAAAAGAAGAAAAAAAGAAAAAGAAA
48357049 A
1 A
48357050 GGAGAGGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (28 bp):
AAAAAAAGAAGAAAAAAAGAAAAAGAAA
Found at i:48358048 original size:24 final size:24
Alignment explanation
Indices: 48357995--48358048 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
48357985 CCCAAAGGTG
*
48357995 CAGTGGATTGAACCTTAAAGGTTA
1 CAGTGGATTGAACCTTAAAGATTA
*
48358019 CGGTGGATTGAACCTTAAAGATTA
1 CAGTGGATTGAACCTTAAAGATTA
*
48358043 TAGTGG
1 CAGTGG
48358049 GGCAATCTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (24 bp):
CAGTGGATTGAACCTTAAAGATTA
Found at i:48358448 original size:45 final size:44
Alignment explanation
Indices: 48358317--48358527 Score: 221
Period size: 44 Copynumber: 4.8 Consensus size: 44
48358307 AACAGATCGG
* *
48358317 TGAAGATAGCAGATCATGCCTTCCTGTACTGTCAGCGAAGCAGA
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * *
48358361 TCGAAGACATCAG-CCTTGCCTTCCTGTATTGACAGCGGAGCAGA
1 T-GAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
*
48358405 CTGAAGATAGCAGATCTTGCCTTCCTGTACT-AGCAGCAAAGCAGA
1 -TGAAGATAGCAGATCTTGCCTTCCTGTACTGA-CAGCGAAGCAGA
* * * * * * *
48358450 TCAAAGACACCAG-CCTTGCCTTCTTGTACTGACAGTGGAGCAGA
1 T-GAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
48358494 CTGAAGATAGCAGATCTTGCCTTCCTGTACTGAC
1 -TGAAGATAGCAGATCTTGCCTTCCTGTACTGAC
48358528 GGTGAATCTT
Statistics
Matches: 133, Mismatches: 26, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
44 70 0.53
45 63 0.47
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (44 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
Found at i:48358468 original size:89 final size:89
Alignment explanation
Indices: 48358317--48358525 Score: 339
Period size: 89 Copynumber: 2.3 Consensus size: 89
48358307 AACAGATCGG
* * * *
48358317 TGAAGATAGCAGATCATGCCTTCCTGTACTGTCAGCGAAGCAGATCGAAGACATCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGTCAGCAAAGCAGATCAAAGACACCAGCCTTGCCT
*
48358382 TCCTGTATTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
48358406 TGAAGATAGCAGATCTTGCCTTCCTGTACTAG-CAGCAAAGCAGATCAAAGACACCAGCCTTGCC
1 TGAAGATAGCAGATCTTGCCTTCCTGTACT-GTCAGCAAAGCAGATCAAAGACACCAGCCTTGCC
* *
48358470 TTCTTGTACTGACAGTGGAGCAGAC
65 TTCCTGTACTGACAGCGGAGCAGAC
48358495 TGAAGATAGCAGATCTTGCCTTCCTGTACTG
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTG
48358526 ACGGTGAATC
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
88 1 0.01
89 110 0.98
90 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (89 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACTGTCAGCAAAGCAGATCAAAGACACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGAC
Found at i:48358766 original size:132 final size:132
Alignment explanation
Indices: 48358528--48358970 Score: 699
Period size: 132 Copynumber: 3.4 Consensus size: 132
48358518 CTGTACTGAC
* *
48358528 GGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATATCCCTAAG
1 GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
* *
48358593 CAGTAGTGGAGTAGGTTGAAGACTGCAGATTCTGTCACCCTAAGCAGTAATGGAGCAGATCGAAG
66 CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAG
48358658 AT
131 AT
* *
48358660 AGTGAATCTTATCTTCTCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
1 GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
* * *
48358725 GAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAGCAGTAGTAGAGCAGATCGAAG
66 CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAG
48358790 AT
131 AT
* * *
48358792 GGTGAATCTTATCTTCCCAAGATAGTGGAAAAGCAGATTTAAGCCGTTAGTCCTATCTCCCTAAG
1 GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
*
48358857 CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAACAGATC-ATA
66 CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGA-A
48358921 GAT
130 GAT
* * * * * *
48358924 GGTGAATCTTATCTTCTCAAGGTAGTAGGGAAGTAAATTTAAACCAT
1 GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCAT
48358971 AAACCTCGAC
Statistics
Matches: 283, Mismatches: 27, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 282 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAG
AT
Found at i:48360020 original size:24 final size:24
Alignment explanation
Indices: 48359967--48360020 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
48359957 CCCAAAGGTG
*
48359967 CAGTGGATTGAACCTTAAAGGTTA
1 CAGTGGATTGAACCTTAAAGATTA
*
48359991 CGGTGGATTGAACCTTAAAGATTA
1 CAGTGGATTGAACCTTAAAGATTA
*
48360015 TAGTGG
1 CAGTGG
48360021 GGCAATCTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.30
Consensus pattern (24 bp):
CAGTGGATTGAACCTTAAAGATTA
Found at i:48360420 original size:45 final size:44
Alignment explanation
Indices: 48360289--48360499 Score: 221
Period size: 44 Copynumber: 4.8 Consensus size: 44
48360279 AACAGATCGG
* *
48360289 TGAAGATAGCAGATCATGCCTTCCTGTACTGTCAGCGAAGCAGA
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * *
48360333 TCGAAGACATCAG-CCTTGCCTTCCTGTATTGACAGCGGAGCAGA
1 T-GAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
*
48360377 CTGAAGATAGCAGATCTTGCCTTCCTGTACT-AGCAGCAAAGCAGA
1 -TGAAGATAGCAGATCTTGCCTTCCTGTACTGA-CAGCGAAGCAGA
* * * * * * *
48360422 TCAAAGACACCAG-CCTTGCCTTCTTGTACTGACAGTGGAGCAGA
1 T-GAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
48360466 CTGAAGATAGCAGATCTTGCCTTCCTGTACTGAC
1 -TGAAGATAGCAGATCTTGCCTTCCTGTACTGAC
48360500 GGTGAATCTT
Statistics
Matches: 133, Mismatches: 26, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
44 70 0.53
45 63 0.47
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (44 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
Found at i:48360440 original size:89 final size:89
Alignment explanation
Indices: 48360289--48360497 Score: 339
Period size: 89 Copynumber: 2.3 Consensus size: 89
48360279 AACAGATCGG
* * * *
48360289 TGAAGATAGCAGATCATGCCTTCCTGTACTGTCAGCGAAGCAGATCGAAGACATCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGTCAGCAAAGCAGATCAAAGACACCAGCCTTGCCT
*
48360354 TCCTGTATTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
48360378 TGAAGATAGCAGATCTTGCCTTCCTGTACTAG-CAGCAAAGCAGATCAAAGACACCAGCCTTGCC
1 TGAAGATAGCAGATCTTGCCTTCCTGTACT-GTCAGCAAAGCAGATCAAAGACACCAGCCTTGCC
* *
48360442 TTCTTGTACTGACAGTGGAGCAGAC
65 TTCCTGTACTGACAGCGGAGCAGAC
48360467 TGAAGATAGCAGATCTTGCCTTCCTGTACTG
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTG
48360498 ACGGTGAATC
Statistics
Matches: 112, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
88 1 0.01
89 110 0.98
90 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.24
Consensus pattern (89 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACTGTCAGCAAAGCAGATCAAAGACACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGAC
Found at i:48360738 original size:132 final size:132
Alignment explanation
Indices: 48360500--48360942 Score: 699
Period size: 132 Copynumber: 3.4 Consensus size: 132
48360490 CTGTACTGAC
* *
48360500 GGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATATCCCTAAG
1 GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
* *
48360565 CAGTAGTGGAGTAGGTTGAAGACTGCAGATTCTGTCACCCTAAGCAGTAATGGAGCAGATCGAAG
66 CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAG
48360630 AT
131 AT
* *
48360632 AGTGAATCTTATCTTCTCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
1 GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
* * *
48360697 GAGTAGTGGAGTAGGTTGAAGATTGCAGATTTTGTCACCCTAAGCAGTAGTAGAGCAGATCGAAG
66 CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAG
48360762 AT
131 AT
* * *
48360764 GGTGAATCTTATCTTCCCAAGATAGTGGAAAAGCAGATTTAAGCCGTTAGTCCTATCTCCCTAAG
1 GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
*
48360829 CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAACAGATC-ATA
66 CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGA-A
48360893 GAT
130 GAT
* * * * * *
48360896 GGTGAATCTTATCTTCTCAAGGTAGTAGGGAAGTAAATTTAAACCAT
1 GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCAT
48360943 AAACCTCGAC
Statistics
Matches: 283, Mismatches: 27, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
131 1 0.00
132 282 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
GGTGAATCTTATCTTCCCAAGATAGTAGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAG
CAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAG
AT
Found at i:48362764 original size:8 final size:8
Alignment explanation
Indices: 48362751--48362822 Score: 68
Period size: 8 Copynumber: 9.6 Consensus size: 8
48362741 ATATACATAG
48362751 ATTTTATT
1 ATTTTATT
48362759 ATTTTATGT
1 ATTTTAT-T
48362768 -TTTCTATT
1 ATTT-TATT
48362776 A--TTATT
1 ATTTTATT
48362782 A-TTT-TT
1 ATTTTATT
48362788 ATTTTATT
1 ATTTTATT
*
48362796 A-TATA-T
1 ATTTTATT
48362802 ATTTTATT
1 ATTTTATT
48362810 ATTTTATT
1 ATTTTATT
48362818 ATTTT
1 ATTTT
48362823 TATTTATTCT
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
6 10 0.19
7 12 0.22
8 28 0.52
9 4 0.07
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (8 bp):
ATTTTATT
Found at i:48362777 original size:17 final size:15
Alignment explanation
Indices: 48362752--48362827 Score: 64
Period size: 17 Copynumber: 4.7 Consensus size: 15
48362742 TATACATAGA
48362752 TTTTATTATTTTATGT
1 TTTTATTATTTTAT-T
48362768 TTTCTATTATTATTATT
1 TTT-TATTATT-TTATT
* *
48362785 TTTATTTTATTATATATA
1 TTT-TATTATT-T-TATT
48362803 TTTTATTATTTTATT
1 TTTTATTATTTTATT
*
48362818 ATTT-TTATTT
1 TTTTATTATTT
48362828 ATTCTCATTA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
14 6 0.12
15 6 0.12
16 4 0.08
17 25 0.49
18 10 0.20
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.74
Consensus pattern (15 bp):
TTTTATTATTTTATT
Found at i:48362778 original size:3 final size:3
Alignment explanation
Indices: 48362772--48362826 Score: 55
Period size: 3 Copynumber: 19.3 Consensus size: 3
48362762 TTATGTTTTC
*
48362772 TAT TAT TAT TAT TTT TAT T-T TAT TA- TAT ATAT T-T TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
*
48362814 TAT TAT TTT TAT T
1 TAT TAT TAT TAT T
48362827 TATTCTCATT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
2 8 0.19
3 32 0.74
4 3 0.07
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (3 bp):
TAT
Found at i:48362794 original size:14 final size:14
Alignment explanation
Indices: 48362757--48362827 Score: 65
Period size: 14 Copynumber: 5.0 Consensus size: 14
48362747 ATAGATTTTA
48362757 TTATTTTATGT-TTT
1 TTATTTTAT-TATTT
*
48362771 CTATTATTATTATTT
1 TTATT-TTATTATTT
*
48362786 TTATTTTATTATAT
1 TTATTTTATTATTT
*
48362800 ATATTTTATTA-TT
1 TTATTTTATTATTT
*
48362813 TTATTATTTTTATTT
1 TTATT-TTATTATTT
48362828 ATTCTCATTA
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
13 5 0.11
14 28 0.61
15 13 0.28
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.73
Consensus pattern (14 bp):
TTATTTTATTATTT
Found at i:48362811 original size:22 final size:19
Alignment explanation
Indices: 48362751--48362827 Score: 68
Period size: 22 Copynumber: 3.9 Consensus size: 19
48362741 ATATACATAG
*
48362751 ATTTTATTATT-TTATGTT
1 ATTTTATTATTATTATTTT
*
48362769 -TTCTATTATTATTATTTTT
1 ATTTTATTATTATTA-TTTT
*
48362788 ATTTTATTATATATATTTTATT
1 ATTTTATTAT-TAT-TATT-TT
*
48362810 ATTTTATTATTTTTATTT
1 ATTTTATTATTATTATTT
48362828 ATTCTCATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
17 9 0.19
18 3 0.06
19 4 0.09
20 11 0.23
21 7 0.15
22 13 0.28
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.73
Consensus pattern (19 bp):
ATTTTATTATTATTATTTT
Found at i:48362839 original size:22 final size:20
Alignment explanation
Indices: 48362754--48362830 Score: 58
Period size: 20 Copynumber: 3.9 Consensus size: 20
48362744 TACATAGATT
48362754 TTATTA-TTTTATGTT-TTCTA
1 TTATTATTTTTAT-TTATT-TA
*
48362774 TTATTATTATT-TTTATTTTA
1 TTATTATTTTTATTTA-TTTA
48362794 TTATATATATTTTA-TTA-TT-
1 TTAT-TAT-TTTTATTTATTTA
48362813 TTATTATTTTTATTTATT
1 TTATTATTTTTATTTATT
48362831 CTCATTATTG
Statistics
Matches: 47, Mismatches: 2, Indels: 17
0.71 0.03 0.26
Matches are distributed among these distances:
17 5 0.11
18 6 0.13
19 7 0.15
20 15 0.32
21 8 0.17
22 6 0.13
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.73
Consensus pattern (20 bp):
TTATTATTTTTATTTATTTA
Found at i:48363224 original size:107 final size:107
Alignment explanation
Indices: 48363062--48363337 Score: 462
Period size: 107 Copynumber: 2.6 Consensus size: 107
48363052 TTTTTTTTTC
* * *
48363062 AAGGCAATGTTTTGTGTTTGGAAATTCGAGGAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTT
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
*
48363127 CGTTCGACTAAATAACCAAATATCCTTTTAAAATTTTAAAAT
66 CGTTCGACCAAATAACCAAATATCCTTTTAAAATTTTAAAAT
* * *
48363169 AAGGCAATGTTTTGCATTTGGAAATTCGAGAAAATGTGCCCTAATGTGCTGGGTTTTGATTTTCT
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
*
48363234 CGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTTAAAAT
66 CGTTCGACCAAATAACCAAATATCCTTTTAAAATTTTAAAAT
* *
48363276 AAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAATGTGCTGGGTTTCAATTT
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTT
48363338 CTCATCGGAC
Statistics
Matches: 156, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
107 156 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (107 bp):
AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
CGTTCGACCAAATAACCAAATATCCTTTTAAAATTTTAAAAT
Found at i:48364254 original size:21 final size:21
Alignment explanation
Indices: 48364214--48364256 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
48364204 TGGAGTAGGA
* **
48364214 ATATCGATCCCTTAGGAAAAT
1 ATATCGATACCTTAAAAAAAT
48364235 ATATCGATACCTTAAAAAAAT
1 ATATCGATACCTTAAAAAAAT
48364256 A
1 A
48364257 CTGATACCGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (21 bp):
ATATCGATACCTTAAAAAAAT
Found at i:48369373 original size:49 final size:49
Alignment explanation
Indices: 48369301--48369410 Score: 202
Period size: 49 Copynumber: 2.2 Consensus size: 49
48369291 CAGTATAATG
48369301 GTTTTTCCTTTTAACTTTAGAAAAGGTAAACATTTATCAAAACGACGTA
1 GTTTTTCCTTTTAACTTTAGAAAAGGTAAACATTTATCAAAACGACGTA
* *
48369350 GTTTTGCCTTTTAACTTTAGAAAAGGTAATCATTTATCAAAACGACGTA
1 GTTTTTCCTTTTAACTTTAGAAAAGGTAAACATTTATCAAAACGACGTA
48369399 GTTTTTCCTTTT
1 GTTTTTCCTTTT
48369411 CTTATTCGGG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 58 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.41
Consensus pattern (49 bp):
GTTTTTCCTTTTAACTTTAGAAAAGGTAAACATTTATCAAAACGACGTA
Found at i:48376217 original size:34 final size:34
Alignment explanation
Indices: 48376174--48376241 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
48376164 TCTGAAAGAT
48376174 CTGCCACTTAAACTCCAGTGAGCCTTAATTTGGC
1 CTGCCACTTAAACTCCAGTGAGCCTTAATTTGGC
48376208 CTGCCACTTAAACTCCAGTGAGCCTTAATTTGGC
1 CTGCCACTTAAACTCCAGTGAGCCTTAATTTGGC
48376242 AATCGTTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (34 bp):
CTGCCACTTAAACTCCAGTGAGCCTTAATTTGGC
Found at i:48381963 original size:51 final size:50
Alignment explanation
Indices: 48381885--48382153 Score: 177
Period size: 51 Copynumber: 5.6 Consensus size: 50
48381875 TTCAATTTGC
* * ** * *
48381885 TCCACTGCTACTTTAGGGGGATAAGATTTGTAACTTGTAGCTTTAGTCTGT
1 TCCACTGCAACTTCAGGGAAATAAGATTTGTAACTT-TAGATTTAATCTGT
* * * * * * * *
48381936 TCTACTAG-AACTTCAGGGAAATAAGATTCGCATCTTCA-ATCTACTCCGT
1 TCCACT-GCAACTTCAGGGAAATAAGATTTGTAACTTTAGATTTAATCTGT
* * *
48381985 T--A---CAACTTCAGGGAGATAAGATTTTTAACTTATAGTTTTAATCTGT
1 TCCACTGCAACTTCAGGGAAATAAGATTTGTAACTT-TAGATTTAATCTGT
* * * * * *
48382031 TCCACTGCAACTTTAGGGAAATAAGATTCGCATCTTCA-A--T--T-TGC
1 TCCACTGCAACTTCAGGGAAATAAGATTTGTAACTTTAGATTTAATCTGT
* * *
48382075 TCCACTGTAACTTCAGGGAGATAAGATTTGTAACTTATAGCTTTAATCTGT
1 TCCACTGCAACTTCAGGGAAATAAGATTTGTAACTT-TAGATTTAATCTGT
48382126 TCCACTGCAACTTCAGGGAAATAAGATT
1 TCCACTGCAACTTCAGGGAAATAAGATT
48382154 CACTAGAATG
Statistics
Matches: 159, Mismatches: 43, Indels: 32
0.68 0.18 0.14
Matches are distributed among these distances:
44 55 0.35
45 3 0.02
46 8 0.05
47 2 0.01
48 2 0.01
49 8 0.05
50 3 0.02
51 77 0.48
52 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35
Consensus pattern (50 bp):
TCCACTGCAACTTCAGGGAAATAAGATTTGTAACTTTAGATTTAATCTGT
Found at i:48381973 original size:95 final size:95
Alignment explanation
Indices: 48381834--48382154 Score: 405
Period size: 95 Copynumber: 3.4 Consensus size: 95
48381824 TTGTCGCTAC
* * * * * * *
48381834 AATCTGCTCTACTGTAACTTTA-GGAAGATAAGATTAGTAGCTTCAATTTGCTCCACTGCTACTT
1 AATCTGTTCCACTGCAACTTCAGGGAA-ATAAGATTCGCATCTTCAATTTGCTCCACTGCTACTT
* * *
48381898 TAGGGGGATAAGATTTGTAACTTGTAGCTTT
65 CAGGGAGATAAGATTTGTAACTTATAGCTTT
* * * * ** * *
48381929 AGTCTGTTCTACTAG-AACTTCAGGGAAATAAGATTCGCATCTTCAATCTACTCCGTTACAACTT
1 AATCTGTTCCACT-GCAACTTCAGGGAAATAAGATTCGCATCTTCAATTTGCTCCACTGCTACTT
* *
48381993 CAGGGAGATAAGATTTTTAACTTATAGTTTT
65 CAGGGAGATAAGATTTGTAACTTATAGCTTT
*
48382024 AATCTGTTCCACTGCAACTTTAGGGAAATAAGATTCGCATCTTCAATTTGCTCCACTG-TAACTT
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATTTGCTCCACTGCT-ACTT
48382088 CAGGGAGATAAGATTTGTAACTTATAGCTTT
65 CAGGGAGATAAGATTTGTAACTTATAGCTTT
48382119 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTC
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTC
48382155 ACTAGAATGA
Statistics
Matches: 193, Mismatches: 29, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
94 1 0.01
95 187 0.97
96 5 0.03
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (95 bp):
AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATTTGCTCCACTGCTACTTC
AGGGAGATAAGATTTGTAACTTATAGCTTT
Found at i:48393887 original size:4 final size:4
Alignment explanation
Indices: 48393867--48393908 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
48393857 TTTTTAAGTG
*
48393867 TAAA TAAA -AAA GT-AA TAAA TAAA TGAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA -TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
48393909 GGCTTGTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
3 4 0.12
4 29 0.88
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:48401803 original size:225 final size:225
Alignment explanation
Indices: 48401412--48401861 Score: 900
Period size: 225 Copynumber: 2.0 Consensus size: 225
48401402 TAATGGATCT
48401412 CATTAAGTTAGCTTGTGGGTGGTGATTTCTCAACACTATAAATATGGGGGGTTTCTACTTCATCG
1 CATTAAGTTAGCTTGTGGGTGGTGATTTCTCAACACTATAAATATGGGGGGTTTCTACTTCATCG
48401477 CCCAATAAGAAGCCTTCCAAAAGCCAGAAAAAGAAAAGCAGCAGATAAGCATATCCAGTGTTATA
66 CCCAATAAGAAGCCTTCCAAAAGCCAGAAAAAGAAAAGCAGCAGATAAGCATATCCAGTGTTATA
48401542 TTAGTTTGTGGGATGGCAAAACTGTCAGATCCTCTTGTGTTGGGGAGAGTGATTGGGGATGTTAT
131 TTAGTTTGTGGGATGGCAAAACTGTCAGATCCTCTTGTGTTGGGGAGAGTGATTGGGGATGTTAT
48401607 TGATGCCCTCTCCCCATCTGTGAAAATGTC
196 TGATGCCCTCTCCCCATCTGTGAAAATGTC
48401637 CATTAAGTTAGCTTGTGGGTGGTGATTTCTCAACACTATAAATATGGGGGGTTTCTACTTCATCG
1 CATTAAGTTAGCTTGTGGGTGGTGATTTCTCAACACTATAAATATGGGGGGTTTCTACTTCATCG
48401702 CCCAATAAGAAGCCTTCCAAAAGCCAGAAAAAGAAAAGCAGCAGATAAGCATATCCAGTGTTATA
66 CCCAATAAGAAGCCTTCCAAAAGCCAGAAAAAGAAAAGCAGCAGATAAGCATATCCAGTGTTATA
48401767 TTAGTTTGTGGGATGGCAAAACTGTCAGATCCTCTTGTGTTGGGGAGAGTGATTGGGGATGTTAT
131 TTAGTTTGTGGGATGGCAAAACTGTCAGATCCTCTTGTGTTGGGGAGAGTGATTGGGGATGTTAT
48401832 TGATGCCCTCTCCCCATCTGTGAAAATGTC
196 TGATGCCCTCTCCCCATCTGTGAAAATGTC
48401862 AGTCACTTTC
Statistics
Matches: 225, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
225 225 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (225 bp):
CATTAAGTTAGCTTGTGGGTGGTGATTTCTCAACACTATAAATATGGGGGGTTTCTACTTCATCG
CCCAATAAGAAGCCTTCCAAAAGCCAGAAAAAGAAAAGCAGCAGATAAGCATATCCAGTGTTATA
TTAGTTTGTGGGATGGCAAAACTGTCAGATCCTCTTGTGTTGGGGAGAGTGATTGGGGATGTTAT
TGATGCCCTCTCCCCATCTGTGAAAATGTC
Found at i:48402461 original size:2 final size:2
Alignment explanation
Indices: 48402454--48402499 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
48402444 CATTCTTCAT
*
48402454 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AC AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
48402496 AG AG
1 AG AG
48402500 CATTATATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:48407851 original size:6 final size:6
Alignment explanation
Indices: 48407837--48407870 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
48407827 CACTTTCAAT
*
48407837 TTCAAG TTCAGG TTCAGG TTCAGG TTCAGG TTCA
1 TTCAGG TTCAGG TTCAGG TTCAGG TTCAGG TTCA
48407871 CTGCTAGCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (6 bp):
TTCAGG
Found at i:48407852 original size:18 final size:18
Alignment explanation
Indices: 48407831--48407870 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
48407821 CATGTTCACT
*
48407831 TTCAATTTCAAGTTCAGG
1 TTCAAGTTCAAGTTCAGG
* *
48407849 TTCAGGTTCAGGTTCAGG
1 TTCAAGTTCAAGTTCAGG
48407867 TTCA
1 TTCA
48407871 CTGCTAGCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (18 bp):
TTCAAGTTCAAGTTCAGG
Found at i:48416460 original size:31 final size:33
Alignment explanation
Indices: 48416403--48416465 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 33
48416393 CTCTCAAAAA
** *
48416403 ATTAGGAGCTAATTTATTCTATCCTAA-AATAC
1 ATTAGGAGCTAAACTATTCTAACCTAAGAATAC
48416435 ATTAGGAG-TAAACTATTCTAACCTAAGAATA
1 ATTAGGAGCTAAACTATTCTAACCTAAGAATA
48416466 TAGTAGAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.33
Consensus pattern (33 bp):
ATTAGGAGCTAAACTATTCTAACCTAAGAATAC
Found at i:48418081 original size:29 final size:29
Alignment explanation
Indices: 48418012--48418081 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
48418002 TTAAAAATAA
48418012 TAAATAATA-AATAATAAAATTTATAGTT
1 TAAATAATATAATAATAAAATTTATAGTT
*
48418040 TAAATTAAT-TAATAATAATATTT-TA-TT
1 TAAA-TAATATAATAATAAAATTTATAGTT
48418067 CTCAAATAATATAAT
1 -T-AAATAATATAAT
48418082 TTATTTTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
27 2 0.06
28 11 0.31
29 23 0.64
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (29 bp):
TAAATAATATAATAATAAAATTTATAGTT
Found at i:48418086 original size:20 final size:19
Alignment explanation
Indices: 48418050--48418106 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
48418040 TAAATTAATT
*
48418050 AATAATAATATTTTATTCTCA
1 AATAAT-ATAATTTATT-TCA
*
48418071 AATAATATAATTTATTTTA
1 AATAATATAATTTATTTCA
*
48418090 AATATATATAATATATT
1 AATA-ATATAATTTATT
48418107 AATAGCAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.19
20 20 0.62
21 6 0.19
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (19 bp):
AATAATATAATTTATTTCA
Found at i:48420448 original size:46 final size:43
Alignment explanation
Indices: 48420307--48420494 Score: 227
Period size: 43 Copynumber: 4.3 Consensus size: 43
48420297 ACTTTAGAAA
* * * *
48420307 AAACGCCGCTAAAGATCAAGACATTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTCCCCAC
*
48420350 AAACGCCGCTAAAGACCATA-ACCTTTAGCGGCGCTTTCCCCCC
1 AAACGCCGCTAAAGACCA-AGACCTTTAGCGGCGCTTTCCCCAC
* *
48420393 AAACGCCGCTAAAGACCAAGAGCTTTAACGACGACGCTTTCCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTT-A-G-CGGCGCTTTCCCCAC
* **
48420439 AAACGCCGCTAAAGACCAAGACCTTTAGTGGCGCCTTT-ATCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCG-CTTTCCCCAC
48420482 AAACGCCGCTAAA
1 AAACGCCGCTAAA
48420495 AATATAATCT
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
42 1 0.01
43 78 0.62
44 7 0.06
45 2 0.02
46 38 0.30
ACGTcount: A:0.31, C:0.34, G:0.17, T:0.18
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTCCCCAC
Found at i:48420455 original size:89 final size:86
Alignment explanation
Indices: 48420307--48420494 Score: 229
Period size: 89 Copynumber: 2.2 Consensus size: 86
48420297 ACTTTAGAAA
* * *
48420307 AAACGCCGCTAAAGATCAAGACATTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGACCATA-A
1 AAACGCCGCTAAAGACCAAGACATTTAGCGACACTTTCCCCACAAACGCCGCTAAAGACCA-AGA
* *
48420371 CCTTTAGCGGCG-CTTTCCCCCC
65 CCTTTAGCGGCGCCTTT-ACCAC
*
48420393 AAACGCCGCTAAAGACCAAGAGC-TTTAACGACGACGCTTTCCCCACAAACGCCGCTAAAGACCA
1 AAACGCCGCTAAAGACCAAGA-CATTT-A-G-CGACACTTTCCCCACAAACGCCGCTAAAGACCA
* *
48420457 AGACCTTTAGTGGCGCCTTTATCAC
62 AGACCTTTAGCGGCGCCTTTACCAC
48420482 AAACGCCGCTAAA
1 AAACGCCGCTAAA
48420495 AATATAATCT
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
86 23 0.26
87 2 0.02
88 2 0.02
89 57 0.65
90 4 0.05
ACGTcount: A:0.31, C:0.34, G:0.17, T:0.18
Consensus pattern (86 bp):
AAACGCCGCTAAAGACCAAGACATTTAGCGACACTTTCCCCACAAACGCCGCTAAAGACCAAGAC
CTTTAGCGGCGCCTTTACCAC
Found at i:48423791 original size:54 final size:54
Alignment explanation
Indices: 48423709--48423816 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
48423699 TCATGTAATC
48423709 AAAGTCATCAGACCAAATTCTGGACATTTTTGGACAAGCCACCATCATCCTTTT
1 AAAGTCATCAGACCAAATTCTGGACATTTTTGGACAAGCCACCATCATCCTTTT
*
48423763 AAAGTCATCAGACCAAATTCTGGACATTTTTGGACAAGCCACCGTCATCCTTTT
1 AAAGTCATCAGACCAAATTCTGGACATTTTTGGACAAGCCACCATCATCCTTTT
48423817 GCGAAAGTTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.30
Consensus pattern (54 bp):
AAAGTCATCAGACCAAATTCTGGACATTTTTGGACAAGCCACCATCATCCTTTT
Found at i:48425826 original size:89 final size:89
Alignment explanation
Indices: 48425723--48425899 Score: 255
Period size: 89 Copynumber: 2.0 Consensus size: 89
48425713 ACTAACTCTT
* *
48425723 AACCCCAAACCCCTAACCAATAACCCCTGAACCTTATTTAATATATAAATTAAAAAACACTAATT
1 AACCCCAAACCCCTAACCAATAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATT
*
48425788 AATCTAAATCATAAACCCTAACCC
66 AATCTAAACCATAAACCCTAACCC
* ** * * *
48425812 AACCCCAAATCCCTAACCCCTAACCCCTAAATATTATTTAATATATAAATTAAAACAGACTAATT
1 AACCCCAAACCCCTAACCAATAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATT
* *
48425877 AATCTAAACCCTAACCCCTAACC
66 AATCTAAACCATAAACCCTAACC
48425900 TGACACCAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 77 1.00
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (89 bp):
AACCCCAAACCCCTAACCAATAACCCCTAAACATTATTTAATATATAAATTAAAAAACACTAATT
AATCTAAACCATAAACCCTAACCC
Found at i:48426003 original size:14 final size:15
Alignment explanation
Indices: 48425986--48426019 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
48425976 CTTAAATCAG
48425986 AATCTCTAA-TCCAT
1 AATCTCTAATTCCAT
48426000 AATCTCTAATTCCAT
1 AATCTCTAATTCCAT
48426015 AATCT
1 AATCT
48426020 ATAAACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.35, C:0.26, G:0.00, T:0.38
Consensus pattern (15 bp):
AATCTCTAATTCCAT
Found at i:48426486 original size:41 final size:41
Alignment explanation
Indices: 48426427--48426578 Score: 207
Period size: 41 Copynumber: 3.7 Consensus size: 41
48426417 AAATGTTTTT
48426427 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
** * * *
48426468 GCGGCGCTTTTTGGAAAACGTCGCTAAAG-CCCGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
* *
48426508 GCGGCGCTTTTCCAAAAACGCAGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
* *
48426549 CCGGCGCTTTTTTTAAAAACGCCGCTAAAG
1 GCGGCGC-TTTTTCAAAAACGCCGCTAAAG
48426579 CCCCGAAAGG
Statistics
Matches: 93, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 33 0.35
41 41 0.44
42 19 0.20
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
Found at i:48426748 original size:40 final size:40
Alignment explanation
Indices: 48426636--48426751 Score: 148
Period size: 40 Copynumber: 2.9 Consensus size: 40
48426626 CGTTTTTTCA
*
48426636 AAAAACGCCGCTAATGCTC-ATTTTTAGCGGCGCTTTAAT
1 AAAAACGCCGCTAATGCTCTATTTTTAGCGGCGTTTTAAT
* * *
48426675 AAAAATGCCGCTAATGCT-TGATCTTTAGCGGCGTTTTACGT
1 AAAAACGCCGCTAATGCTCT-ATTTTTAGCGGCGTTTTA-AT
*
48426716 -AAAGCGCCGCTAATGCTCTATTTTTAGCGGCGTTTT
1 AAAAACGCCGCTAATGCTCTATTTTTAGCGGCGTTTT
48426752 TTGTCCAAAC
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
39 17 0.26
40 47 0.71
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (40 bp):
AAAAACGCCGCTAATGCTCTATTTTTAGCGGCGTTTTAAT
Found at i:48426837 original size:3 final size:3
Alignment explanation
Indices: 48426831--48426856 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
48426821 AATAATAATA
48426831 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
48426857 AATAATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:48428380 original size:23 final size:24
Alignment explanation
Indices: 48428350--48428398 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
48428340 ATTTTTTTAC
48428350 AAGGAATCAAATA-AAAAAAAAGA
1 AAGGAATCAAATACAAAAAAAAGA
*
48428373 AAGGAATCAAATACAAAAAAGAGA
1 AAGGAATCAAATACAAAAAAAAGA
48428397 AA
1 AA
48428399 ACAACGAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.71, C:0.06, G:0.14, T:0.08
Consensus pattern (24 bp):
AAGGAATCAAATACAAAAAAAAGA
Found at i:48441044 original size:12 final size:12
Alignment explanation
Indices: 48441027--48441053 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
48441017 GCTGCTGATT
48441027 TTGGTTGAGCAA
1 TTGGTTGAGCAA
48441039 TTGGTTGAGCAA
1 TTGGTTGAGCAA
48441051 TTG
1 TTG
48441054 TTTCGTCCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.07, G:0.33, T:0.37
Consensus pattern (12 bp):
TTGGTTGAGCAA
Found at i:48445434 original size:676 final size:677
Alignment explanation
Indices: 48444135--48445485 Score: 2517
Period size: 676 Copynumber: 2.0 Consensus size: 677
48444125 TATTTAGAAT
48444135 GTGTGCCAGCCTTAGCTTACATAGACCAAGGATTAGGTCCTATACCTTAGATTTTTATGCACAAC
1 GTGTGCCAGCCTTAGCTTACATAGACCAAGGATTAGGTCCTATACCTTAGATTTTTATGCACAAC
* * *
48444200 GGGATTATGTGAAAAGGCTTGTATATGCTAGTGACAAGACCTGTATTGAATAGGTTATGATGAAT
66 GGGATTATGTGAAAAGGCTTGTATATGCTAGTGACAAGACCTGTATTGAACAAGTTAGGATGAAT
* ***
48444265 AGAACTGCCTTTTTTAAACTATGTGAGATGTTAGAATCGATAGGGGGATTGAAGTTGTCAAGGTT
131 AGAACTGCCTTTTTTAAACTATGTGAGATGTTAGAATCGATAGGGGGATTGAAGTCGTCAAGAAA
48444330 CATGCTTGTTGATGAGCAAGTTAGCAATGTTTTTACATATCATCTCCCATCACCTGAAAAATCGA
196 CATGCTTGTTGATGAGCAAGTTAGCAATGTTTTTACATATCATCTCCCATCACCTGAAAAATCGA
48444395 GTTATCAAGCATCACTTTAGAAGGTCCGGGGAAACTGTTAGCAGAGCATTTCATAGTGTTTTAAA
261 GTTATCAAGCATCACTTTAGAAGGTCCGGGGAAACTGTTAGCAGAGCATTTCATAGTGTTTTAAA
* *
48444460 TGTTGTCGTACGCTTACAAGATGTGTTATTTAAAAAGCCGGAGCCAATTACAGCCGATTCTTCTG
326 TGCTGTCATACGCTTACAAGATGTGTTATTTAAAAAGCCGGAGCCAATTACAGCCGATTCTTCTG
*
48444525 ACACAAGGTGGAAATGGTTTAAGGTATTGGACTGAGTTTTATATATAGCTTGTACAACATTTAGT
391 ACACAAGGTGGAAATGGTTTAAGGTATTAGACTGAGTTTTATATATAGCTTGTACAACATTTAGT
*
48444590 TGATTTAGATTTAAATTAGTATTCTAACTCAAGGCTTTATATCATGTGATATAGAATTGCTTAGG
456 TGACTTAGATTTAAATTAGTATTCTAACTCAAGGCTTTATATCATGTGATATAGAATTGCTTAGG
* *
48444655 TGCTCTTGATGGAACCCACATCAAGATTAGGGTTCCAACAGTTGATAAACCTAGATATCGAACGC
521 TGCTCTTGATGGAACCCACATCAAGATTAGGGTGCCAACAGTTGATAAACCTAGATATCGAACCC
48444720 GAAAAGGTGACATAGCAACAAATATGCTAGAGGTTTGTACACCTGAGATGCAATTTGTTTATGTT
586 GAAAAGGTGACATAGCAACAAATATGCTAGAGGTTTGTACACCTGAGATGCAATTTGTTTATGTT
*
48444785 CTTCTTGGTTGGGAAGGTTCAGTTGTC
651 CTTCCTGGTTGGGAAGGTTCAGTTGTC
48444812 GTGTGCCAGCCTTAGCTTACATAGACCAAGGATTAGGTCCTATACCTTAGATTTTTATGCACAAC
1 GTGTGCCAGCCTTAGCTTACATAGACCAAGGATTAGGTCCTATACCTTAGATTTTTATGCACAAC
* * *
48444877 GGGATTATGTGAAGAGGCTTGTATATGCTAGTGACGAGACTTGTATTGAACAAGTTAGGATGAAT
66 GGGATTATGTGAAAAGGCTTGTATATGCTAGTGACAAGACCTGTATTGAACAAGTTAGGATGAAT
48444942 AGAACTGCCTTTTTTAAACTATGTGAGATGTTAGAATCGATAGGGGGATTGAAGTCGTCAAGAAA
131 AGAACTGCCTTTTTTAAACTATGTGAGATGTTAGAATCGATAGGGGGATTGAAGTCGTCAAGAAA
48445007 CATGCTTGTTGATGAGCAAG-TAGCAATGTTTTTACATATCATCTCCCATCACCTGAAAAATCGA
196 CATGCTTGTTGATGAGCAAGTTAGCAATGTTTTTACATATCATCTCCCATCACCTGAAAAATCGA
48445071 GTTATCAAGCATCACTTTAGAAGGTCCGGGGAAACTGTTAGCAGAGCATTTCATAGTGTTTTAAA
261 GTTATCAAGCATCACTTTAGAAGGTCCGGGGAAACTGTTAGCAGAGCATTTCATAGTGTTTTAAA
48445136 TGCTGTCATACGCTTACAAGATGTGTTATTTAAAAAGCCGGAGCCAATTACAGCCGATTCTTCTG
326 TGCTGTCATACGCTTACAAGATGTGTTATTTAAAAAGCCGGAGCCAATTACAGCCGATTCTTCTG
48445201 ACACAAGGTGGAAATGGTTTAAGGTATTAGACTGAGTTTTATATATAGCTTGTACAACATTTAGT
391 ACACAAGGTGGAAATGGTTTAAGGTATTAGACTGAGTTTTATATATAGCTTGTACAACATTTAGT
*
48445266 TGACTTAGATTTAAATTAGTATTCTAACTCAAGGTTTTATATCATGTGATATAGAATTGCTTAGG
456 TGACTTAGATTTAAATTAGTATTCTAACTCAAGGCTTTATATCATGTGATATAGAATTGCTTAGG
48445331 TGCTCTTGATGGAACCCACATCAAGATTAGGGTGCCAACAGTTGATAAACCTAGATATCGAACCC
521 TGCTCTTGATGGAACCCACATCAAGATTAGGGTGCCAACAGTTGATAAACCTAGATATCGAACCC
48445396 GAAAAGGTGACATAGCAACAAATATGCTAG-GTGTTTGTACACCTGAGATGCAATTTGTTTATGT
586 GAAAAGGTGACATAGCAACAAATATGCTAGAG-GTTTGTACACCTGAGATGCAATTTGTTTATGT
48445460 TCTTCCTGGTTGGGAAGGTTCAGTTG
650 TCTTCCTGGTTGGGAAGGTTCAGTTG
48445486 CCGATGGACG
Statistics
Matches: 655, Mismatches: 18, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
675 1 0.00
676 449 0.69
677 205 0.31
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.32
Consensus pattern (677 bp):
GTGTGCCAGCCTTAGCTTACATAGACCAAGGATTAGGTCCTATACCTTAGATTTTTATGCACAAC
GGGATTATGTGAAAAGGCTTGTATATGCTAGTGACAAGACCTGTATTGAACAAGTTAGGATGAAT
AGAACTGCCTTTTTTAAACTATGTGAGATGTTAGAATCGATAGGGGGATTGAAGTCGTCAAGAAA
CATGCTTGTTGATGAGCAAGTTAGCAATGTTTTTACATATCATCTCCCATCACCTGAAAAATCGA
GTTATCAAGCATCACTTTAGAAGGTCCGGGGAAACTGTTAGCAGAGCATTTCATAGTGTTTTAAA
TGCTGTCATACGCTTACAAGATGTGTTATTTAAAAAGCCGGAGCCAATTACAGCCGATTCTTCTG
ACACAAGGTGGAAATGGTTTAAGGTATTAGACTGAGTTTTATATATAGCTTGTACAACATTTAGT
TGACTTAGATTTAAATTAGTATTCTAACTCAAGGCTTTATATCATGTGATATAGAATTGCTTAGG
TGCTCTTGATGGAACCCACATCAAGATTAGGGTGCCAACAGTTGATAAACCTAGATATCGAACCC
GAAAAGGTGACATAGCAACAAATATGCTAGAGGTTTGTACACCTGAGATGCAATTTGTTTATGTT
CTTCCTGGTTGGGAAGGTTCAGTTGTC
Found at i:48447755 original size:59 final size:57
Alignment explanation
Indices: 48447689--48447877 Score: 143
Period size: 59 Copynumber: 3.2 Consensus size: 57
48447679 ATTTTATTAA
48447689 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTAT-TTTTATAGT
* * ** * * *
48447748 ATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-TTATTA-A--
1 ATCATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATTTTTATAGT
* * * *
48447809 ATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTAT-TTTTATAGT
48447868 ATCATATATT
1 ATCATATATT
48447878 ATGATTTGAG
Statistics
Matches: 97, Mismatches: 19, Indels: 28
0.67 0.13 0.19
Matches are distributed among these distances:
54 13 0.13
55 7 0.07
56 5 0.05
57 3 0.03
59 20 0.21
60 8 0.08
61 10 0.10
63 4 0.04
64 5 0.05
65 6 0.06
66 16 0.16
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (57 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATTTTTATAGT
Found at i:48447786 original size:66 final size:64
Alignment explanation
Indices: 48447716--48447914 Score: 177
Period size: 66 Copynumber: 3.2 Consensus size: 64
48447706 AAATATATTT
48447716 AATATTAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
48447781 G
64 G
* * * * * * **
48447782 AATATTGATTATTAAGAATT-TTATTA-A--ATTATATATT-TTAATT-A-T-AA-T-ATAT-TT
1 AATATTAATTATTTA-AATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
* *
48447836 AATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTAT-TTAAATTAT-TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
48447901 G
64 G
*
48447902 AATATTGATTATT
1 AATATTAATTATT
48447915 AAGAATTTTA
Statistics
Matches: 99, Mismatches: 20, Indels: 29
0.67 0.14 0.20
Matches are distributed among these distances:
54 13 0.13
55 7 0.07
56 5 0.05
57 3 0.03
58 1 0.01
59 10 0.10
60 8 0.08
61 10 0.10
62 1 0.01
63 3 0.03
64 5 0.05
65 7 0.07
66 26 0.26
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (64 bp):
AATATTAATTATTTAAATTATTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAG
Found at i:48447816 original size:120 final size:120
Alignment explanation
Indices: 48447678--48447970 Score: 525
Period size: 120 Copynumber: 2.4 Consensus size: 120
48447668 AATTATTTTA
* * * *
48447678 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATATTT
48447742 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
*
48447798 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
48447863 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
48447918 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
48447971 TAATATGATT
Statistics
Matches: 167, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
120 165 0.99
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
Found at i:48447817 original size:61 final size:61
Alignment explanation
Indices: 48447751--48447938 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
48447741 TTATAGTATC
48447751 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
48447812 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
48447871 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
48447932 ATATATT
1 ATATATT
48447939 TTAATTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 26 0.27
61 36 0.37
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:48447838 original size:15 final size:15
Alignment explanation
Indices: 48447803--48447854 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
48447793 TTAAGAATTT
*
48447803 TATTAAATTAT-ATA
1 TATTTAATTATAATA
48447817 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
48447831 TATTTAATAATAAT-
1 TATTTAATTATAATA
48447845 TATGTTAATT
1 TAT-TTAATT
48447855 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:48447935 original size:59 final size:59
Alignment explanation
Indices: 48447752--48447935 Score: 175
Period size: 59 Copynumber: 3.1 Consensus size: 59
48447742 TATAGTATCA
48447752 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
* * * * * * *
48447811 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATT-ATGTTAATTTA-TATTTTA-TAGTA
1 TATATTATGATTTGAGTA-AAT-TCATATAAGAAT-ATTGA--TT-ATTAAGAATTTTATTA-AA
48447869 T
59 T
48447870 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
48447931 TATAT
1 TATAT
48447936 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 14, Indels: 32
0.67 0.10 0.23
Matches are distributed among these distances:
56 6 0.06
57 12 0.13
58 9 0.09
59 19 0.20
60 8 0.08
61 14 0.15
62 9 0.09
63 12 0.13
64 6 0.06
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.49
Consensus pattern (59 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
Found at i:48447953 original size:16 final size:16
Alignment explanation
Indices: 48447932--48447975 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
48447922 TTATTAAATT
*
48447932 ATATATTTTAATTATA
1 ATATATTTTAATAATA
48447948 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
48447963 AT-TATGTTTAATA
1 ATATAT-TTTAATA
48447976 TGATTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:48448205 original size:45 final size:44
Alignment explanation
Indices: 48448109--48448206 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 44
48448099 CTATTACACC
48448109 TCTATTACATTCAACCAAACACAAGAATACTATTACACCTCTAT
1 TCTATTACATTCAACCAAACACAAGAATACTATTACACCTCTAT
* * * *
48448153 TCCATTACATTCAACCAAACA-ATTGATTTGCTATTACACCTCTAT
1 TCTATTACATTCAACCAAACACA-AGA-ATACTATTACACCTCTAT
48448198 TCTATTACA
1 TCTATTACA
48448207 CCTCTATTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.47
45 24 0.51
ACGTcount: A:0.37, C:0.27, G:0.03, T:0.34
Consensus pattern (44 bp):
TCTATTACATTCAACCAAACACAAGAATACTATTACACCTCTAT
Found at i:48448232 original size:16 final size:16
Alignment explanation
Indices: 48448185--48448238 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
48448175 TTGATTTGCT
*
48448185 ATTACACCTCTATTCT
1 ATTACACCTCTATTCC
48448201 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
48448217 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
48448233 AATACA
1 ATTACA
48448239 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.28, C:0.33, G:0.02, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:48453339 original size:25 final size:26
Alignment explanation
Indices: 48453305--48453410 Score: 110
Period size: 26 Copynumber: 4.2 Consensus size: 26
48453295 TTTTCTCACC
*
48453305 ACAATTGTA-CCCGAGTAAAATTTTA
1 ACAATTGTACCCCCAGTAAAATTTTA
*
48453330 ACAATTGTA-CCCCAGTAAAACTTTA
1 ACAATTGTACCCCCAGTAAAATTTTA
* * *
48453355 CCAATTATACCCCCAATAAAATTTTA
1 ACAATTGTACCCCCAGTAAAATTTTA
* * *
48453381 ACGATT-TAACCCCTAGTAAAATTTTG
1 ACAATTGT-ACCCCCAGTAAAATTTTA
48453407 ACAA
1 ACAA
48453411 ATTTACTCTC
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
25 31 0.46
26 36 0.54
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (26 bp):
ACAATTGTACCCCCAGTAAAATTTTA
Found at i:48453375 original size:26 final size:25
Alignment explanation
Indices: 48453305--48453410 Score: 88
Period size: 25 Copynumber: 4.2 Consensus size: 25
48453295 TTTTCTCACC
* * *
48453305 ACAATTGTACCCGAGTAAAATTTTA
1 ACAATTATACCCCAATAAAATTTTA
* * *
48453330 ACAATTGTACCCCAGTAAAACTTTA
1 ACAATTATACCCCAATAAAATTTTA
*
48453355 CCAATTATACCCCCAATAAAATTTTA
1 ACAATTATA-CCCCAATAAAATTTTA
* * *
48453381 ACGATT-TAACCCCTAGTAAAATTTTG
1 ACAATTAT-ACCCC-AATAAAATTTTA
48453407 ACAA
1 ACAA
48453411 ATTTACTCTC
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
25 35 0.52
26 32 0.48
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (25 bp):
ACAATTATACCCCAATAAAATTTTA
Found at i:48456158 original size:30 final size:30
Alignment explanation
Indices: 48456123--48456224 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
48456113 TATTTTAATG
48456123 AATTTAATATTAATATGAGATATTAAATTA
1 AATTTAATATTAATATGAGATATTAAATTA
* * **
48456153 AATTTAATATTTATAT-AGATAGTATTTTA
1 AATTTAATATTAATATGAGATATTAAATTA
*
48456182 TTAATTTATTATTAATATGAGATATTAAATTA
1 --AATTTAATATTAATATGAGATATTAAATTA
48456214 AATTTAATATT
1 AATTTAATATT
48456225 GATCTAGATA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
29 10 0.17
30 25 0.42
31 14 0.24
32 10 0.17
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (30 bp):
AATTTAATATTAATATGAGATATTAAATTA
Found at i:48456195 original size:61 final size:61
Alignment explanation
Indices: 48456113--48456258 Score: 238
Period size: 61 Copynumber: 2.4 Consensus size: 61
48456103 AAAATAATAT
* * *
48456113 TATTTTAATGAATTTAATATTAATATGAGATATTAAATTAAATTTAATATTTATATAGATAG
1 TATTTT-ATTAATTTAATATTAATATGAGATATTAAATTAAATTTAATATTGATATAGATAA
* *
48456175 TATTTTATTAATTTATTATTAATATGAGATATTAAATTAAATTTAATATTGATCTAGATAA
1 TATTTTATTAATTTAATATTAATATGAGATATTAAATTAAATTTAATATTGATATAGATAA
48456236 TATTTTATTAATTTAATATTAAT
1 TATTTTATTAATTTAATATTAAT
48456259 TAGATTAATT
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
61 72 0.92
62 6 0.08
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.50
Consensus pattern (61 bp):
TATTTTATTAATTTAATATTAATATGAGATATTAAATTAAATTTAATATTGATATAGATAA
Found at i:48458191 original size:24 final size:25
Alignment explanation
Indices: 48458164--48458216 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
48458154 TGGCTCGAAA
* * *
48458164 GAGCGTCCTGTTA-TTAGCTCTCAT
1 GAGCATCCTGATATTTAGCTCTCAC
*
48458188 GAGCATCCTGATATTTGGCTCTCAC
1 GAGCATCCTGATATTTAGCTCTCAC
48458213 GAGC
1 GAGC
48458217 TTCCCATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCATCCTGATATTTAGCTCTCAC
Found at i:48462892 original size:23 final size:23
Alignment explanation
Indices: 48462794--48462892 Score: 112
Period size: 23 Copynumber: 4.4 Consensus size: 23
48462784 TTCACGCGAG
* *
48462794 GTGCCTG--ATACGACACATGAG
1 GTGCCTGATATACGACACATAAA
* * *
48462815 GTGCTTGAAATACAACACATAAA
1 GTGCCTGATATACGACACATAAA
**
48462838 GTGCCAAATATACGACACATAAA
1 GTGCCTGATATACGACACATAAA
48462861 GTGCCTGATATACGACACATAAA
1 GTGCCTGATATACGACACATAAA
*
48462884 GTGCTTGAT
1 GTGCCTGAT
48462893 CGGCAAAGCT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
21 6 0.09
23 58 0.91
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.22
Consensus pattern (23 bp):
GTGCCTGATATACGACACATAAA
Found at i:48463879 original size:28 final size:30
Alignment explanation
Indices: 48463842--48463910 Score: 97
Period size: 28 Copynumber: 2.3 Consensus size: 30
48463832 ATTATTTAAC
*
48463842 TAATAAATATCT-TTTACTT-AATAATAAA
1 TAATAAATATCTATTTACTTAAAAAATAAA
*
48463870 TAATAAATATCTATTTACTTAAAAAATAAT
1 TAATAAATATCTATTTACTTAAAAAATAAA
48463900 TAAATAAATAT
1 T-AATAAATAT
48463911 ATTAAAAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 12 0.33
29 7 0.19
30 8 0.22
31 9 0.25
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.41
Consensus pattern (30 bp):
TAATAAATATCTATTTACTTAAAAAATAAA
Found at i:48463913 original size:29 final size:27
Alignment explanation
Indices: 48463842--48463913 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 27
48463832 ATTATTTAAC
* *
48463842 TAATAAATATCTTTTACTTAATAATAAA
1 TAATAAATAT-ATTTACTTAAAAATAAA
*
48463870 TAATAAATATCTATTTACTTAAAAAATAAT
1 TAATAAATA--TATTTACTT-AAAAATAAA
48463900 TAAATAAATATATT
1 T-AATAAATATATT
48463914 AAAAAGATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 9 0.24
29 11 0.30
30 9 0.24
31 8 0.22
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (27 bp):
TAATAAATATATTTACTTAAAAATAAA
Found at i:48465515 original size:70 final size:70
Alignment explanation
Indices: 48465402--48465544 Score: 277
Period size: 70 Copynumber: 2.0 Consensus size: 70
48465392 TTACGAACTA
48465402 ATTACAAAAGGAATAAATCATAAAACATGAAAAGTAACGAAATTAACAAATAAATGAAAATTGAT
1 ATTACAAAAGGAATAAATCATAAAACATGAAAAGTAACGAAATTAACAAATAAATGAAAATTGAT
48465467 GGTTG
66 GGTTG
*
48465472 ATTACAAAAGGAATAAATCATAAAACATGCAAAGTAACGAAATTAACAAATAAATGAAAATTGAT
1 ATTACAAAAGGAATAAATCATAAAACATGAAAAGTAACGAAATTAACAAATAAATGAAAATTGAT
48465537 GGTTG
66 GGTTG
48465542 ATT
1 ATT
48465545 GATTTTGATG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.55, C:0.08, G:0.14, T:0.24
Consensus pattern (70 bp):
ATTACAAAAGGAATAAATCATAAAACATGAAAAGTAACGAAATTAACAAATAAATGAAAATTGAT
GGTTG
Found at i:48467435 original size:68 final size:68
Alignment explanation
Indices: 48467321--48467454 Score: 171
Period size: 68 Copynumber: 2.0 Consensus size: 68
48467311 GAAATTTAAG
* * *** * *
48467321 GTGTAAGACCATAGCTCGACTATGGAAACATAGAGAGTCTGCCAAGATGTTAATCATGGGGATAA
1 GTGTAAGACCATAGCTCGACTATGGAAACATAAAGAATCCAACAAGACGTTAATCATGAGGATAA
48467386 AAT
66 AAT
* *
48467389 GTGTAAGACTATAGCTC-AGCTATGGCAACATAAAGAATCCAACAAGACGTTAATCATGAGGATA
1 GTGTAAGACCATAGCTCGA-CTATGGAAACATAAAGAATCCAACAAGACGTTAATCATGAGGATA
48467453 AA
65 AA
48467455 TCAAGACTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
67 1 0.02
68 55 0.98
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (68 bp):
GTGTAAGACCATAGCTCGACTATGGAAACATAAAGAATCCAACAAGACGTTAATCATGAGGATAA
AAT
Found at i:48467541 original size:27 final size:27
Alignment explanation
Indices: 48467511--48467562 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
48467501 ATTAGACATG
48467511 GGGTAGTCTGCCAAGACATTAAATGTA
1 GGGTAGTCTGCCAAGACATTAAATGTA
*
48467538 GGGTAGTCTGCTAAGACATTAAATG
1 GGGTAGTCTGCCAAGACATTAAATG
48467563 CGGAGAAGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (27 bp):
GGGTAGTCTGCCAAGACATTAAATGTA
Found at i:48469670 original size:26 final size:26
Alignment explanation
Indices: 48469634--48469686 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
48469624 TGTGTATTAA
48469634 ATAAACTAAAAAATAGTAACATTCCT
1 ATAAACTAAAAAATAGTAACATTCCT
48469660 ATAAACTAAAAAATAGTAACATTCCT
1 ATAAACTAAAAAATAGTAACATTCCT
48469686 A
1 A
48469687 GAATAGTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.55, C:0.15, G:0.04, T:0.26
Consensus pattern (26 bp):
ATAAACTAAAAAATAGTAACATTCCT
Found at i:48472856 original size:18 final size:18
Alignment explanation
Indices: 48472835--48472870 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
48472825 GATATGAAAA
*
48472835 AAAAAAAATCAAATAAAT
1 AAAAAAAACCAAATAAAT
*
48472853 AAAATAAACCAAATAAAT
1 AAAAAAAACCAAATAAAT
48472871 GTCCAGTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAAAAAACCAAATAAAT
Found at i:48478437 original size:16 final size:17
Alignment explanation
Indices: 48478416--48478447 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
48478406 AAATATACAA
48478416 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
48478432 TCACATAACTTCATAT
1 TCACATAACTTCATAT
48478448 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:48478716 original size:41 final size:42
Alignment explanation
Indices: 48478651--48478750 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 42
48478641 TCACATATCA
* *
48478651 ATGCCATTGTCCCAGACAGGGTCTTACAC-AAATC-AAATACG
1 ATGCCAATGTCCCAGACAGAGTCTTACACGAAA-CAAAATACG
* * *
48478692 ATGCCAATGTCCCATACATAGTCTTACACGTAAACAAAATTCG
1 ATGCCAATGTCCCAGACAGAGTCTTACACG-AAACAAAATACG
*
48478735 ATGCTAATGTCCCAGA
1 ATGCCAATGTCCCAGA
48478751 TGTGGTCTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
41 25 0.51
42 1 0.02
43 23 0.47
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGAGTCTTACACGAAACAAAATACG
Found at i:48478759 original size:43 final size:42
Alignment explanation
Indices: 48478608--48478770 Score: 143
Period size: 43 Copynumber: 3.9 Consensus size: 42
48478598 GACTCGTACA
* * * * *
48478608 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACAAAT-TCG
* *
48478651 ATGCCATTGTCCCAGACAG-GGTCTTACAC--AAATCAAATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAA-CAAATTCG
* * *
48478692 ATGCCAATGTCCCATACATAGTCTTACACGTAAACAAAATTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAAC-AAATTCG
* * * *
48478735 ATGCTAATGTCCCAGATGTGGTCTTATACGAAAACA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACA
48478771 CAGATCGAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
41 27 0.28
42 6 0.06
43 61 0.64
44 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAAACAAATTCG
Found at i:48481068 original size:21 final size:21
Alignment explanation
Indices: 48481044--48481083 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
48481034 AGAATTGCCA
* *
48481044 AAATAGTTTGAGGAGAAATGG
1 AAATAGATTGAAGAGAAATGG
*
48481065 AAATGGATTGAAGAGAAAT
1 AAATAGATTGAAGAGAAAT
48481084 TTAGGGCAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.30, T:0.23
Consensus pattern (21 bp):
AAATAGATTGAAGAGAAATGG
Found at i:48482409 original size:25 final size:25
Alignment explanation
Indices: 48482368--48482433 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
48482358 ATAAAATGCA
*
48482368 TCTTTGCATTCATTTTTGAGCCAA-TAT
1 TCTTT-CATTC-TTTTTGA-ACAATTAT
* *
48482395 TCTTTTATTCTTTTTGAATAATTAT
1 TCTTTCATTCTTTTTGAACAATTAT
48482420 TCTTTCATTCTTTT
1 TCTTTCATTCTTTT
48482434 GGATTTTCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 2 0.06
25 23 0.68
26 4 0.12
27 5 0.15
ACGTcount: A:0.20, C:0.15, G:0.06, T:0.59
Consensus pattern (25 bp):
TCTTTCATTCTTTTTGAACAATTAT
Found at i:48483204 original size:1 final size:1
Alignment explanation
Indices: 48483200--48483266 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
48483190 TCAATCAATC
* ** ** * * * *
48483200 AAAAAAAACAAAATCAAAAAAAATGAAAAAAAAATAAAAAAAACAAAAAAGAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
48483265 AA
1 AA
48483267 TCAAAATCAA
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.87, C:0.04, G:0.04, T:0.04
Consensus pattern (1 bp):
A
Found at i:48483206 original size:19 final size:15
Alignment explanation
Indices: 48483196--48483278 Score: 66
Period size: 15 Copynumber: 5.5 Consensus size: 15
48483186 AAGATCAATC
48483196 AATCAAAAAAAACAA
1 AATCAAAAAAAACAA
*
48483211 AATCAAAAAAAATGAA
1 AATCAAAAAAAA-CAA
48483227 AA--AAAAATAAA-AA
1 AATCAAAAA-AAACAA
*
48483240 AAACAAAAAAGAA-AA
1 AATCAAAAAA-AACAA
**
48483255 AAAGAAAAAAAATCAA
1 AATCAAAAAAAA-CAA
48483271 AATCAAAA
1 AATCAAAA
48483279 TCAAAATGAA
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
13 4 0.07
14 8 0.14
15 33 0.58
16 12 0.21
ACGTcount: A:0.82, C:0.07, G:0.04, T:0.07
Consensus pattern (15 bp):
AATCAAAAAAAACAA
Found at i:48483239 original size:35 final size:34
Alignment explanation
Indices: 48483196--48483298 Score: 113
Period size: 36 Copynumber: 2.9 Consensus size: 34
48483186 AAGATCAATC
*
48483196 AATCAAAAAAAACAAAATCAAAAAAAATGAAAAAAA
1 AATCAAAAAAAACAAAAT-AAAAAAAAAG-AAAAAA
48483232 AAT-AAAAAAAACAAAA-AAGAAAAAAAGAAAAAA
1 AATCAAAAAAAACAAAATAA-AAAAAAAGAAAAAA
*
48483265 AATCAAAATCAAAATCAAAAT-GAAAAAAAGAAAA
1 AATCAAAA--AAAA-CAAAATAAAAAAAAAGAAAA
48483299 TGAAAAGAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
33 11 0.19
34 11 0.19
35 13 0.22
36 19 0.32
37 5 0.08
ACGTcount: A:0.81, C:0.07, G:0.05, T:0.08
Consensus pattern (34 bp):
AATCAAAAAAAACAAAATAAAAAAAAAGAAAAAA
Found at i:48484243 original size:47 final size:48
Alignment explanation
Indices: 48484154--48484248 Score: 140
Period size: 47 Copynumber: 2.0 Consensus size: 48
48484144 AAGGAGAAGG
* *
48484154 GACCAAGGTGGAAACCCGCAAAGGGCGATTTGATTCCTAAAAA-AAAA
1 GACCAAGGTGAAAACCCGCAAAGGGCGATTTGATTCCAAAAAATAAAA
*
48484201 GACCAAGGTGAAAACCCGCAAAGGGCGCTTTGAGTT-CAAAAAATAAAA
1 GACCAAGGTGAAAACCCGCAAAGGGCGATTTGA-TTCCAAAAAATAAAA
48484249 ATAAATCAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
47 37 0.86
48 6 0.14
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (48 bp):
GACCAAGGTGAAAACCCGCAAAGGGCGATTTGATTCCAAAAAATAAAA
Found at i:48485690 original size:44 final size:44
Alignment explanation
Indices: 48485622--48485829 Score: 247
Period size: 44 Copynumber: 4.8 Consensus size: 44
48485612 GATACCAATT
* * *
48485622 CTATCTCCCTGGGCAGTAGTGGAATATATTGAAGATTGTGAGTC
1 CTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATGGTGAATC
* * * *
48485666 CTATTTCCCTGGTCAGTAGTGGAATAGGTTGAAGATGGTGAATT
1 CTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATGGTGAATC
* * * * *
48485710 ATATCTCCTTGGGCAGTAGCGGAATAGATTGAAGATTGTGAGTC
1 CTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATGGTGAATC
* * * * * *
48485754 CTATTTCCCTGGTCAATAGTGGAATAGGTTGAAAATGGTGAATT
1 CTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATGGTGAATC
48485798 CTATCTCCCTGGG-AGTAGTGGAATAGATTGAA
1 CTATCTCCCTGGGCAGTAGTGGAATAGATTGAA
48485830 AATCATAGAT
Statistics
Matches: 133, Mismatches: 31, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
43 17 0.13
44 116 0.87
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.32
Consensus pattern (44 bp):
CTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATGGTGAATC
Found at i:48485741 original size:88 final size:88
Alignment explanation
Indices: 48485618--48485829 Score: 363
Period size: 88 Copynumber: 2.4 Consensus size: 88
48485608 CGCAGATACC
* *
48485618 AATTCTATCTCCCTGGGCAGTAGTGGAATATATTGAAGATTGTGAGTCCTATTTCCCTGGTCAGT
1 AATTCTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTGTGAGTCCTATTTCCCTGGTCAAT
*
48485683 AGTGGAATAGGTTGAAGATGGTG
66 AGTGGAATAGGTTGAAAATGGTG
* * *
48485706 AATTATATCTCCTTGGGCAGTAGCGGAATAGATTGAAGATTGTGAGTCCTATTTCCCTGGTCAAT
1 AATTCTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTGTGAGTCCTATTTCCCTGGTCAAT
48485771 AGTGGAATAGGTTGAAAATGGTG
66 AGTGGAATAGGTTGAAAATGGTG
48485794 AATTCTATCTCCCTGGG-AGTAGTGGAATAGATTGAA
1 AATTCTATCTCCCTGGGCAGTAGTGGAATAGATTGAA
48485830 AATCATAGAT
Statistics
Matches: 115, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 18 0.16
88 97 0.84
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.32
Consensus pattern (88 bp):
AATTCTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTGTGAGTCCTATTTCCCTGGTCAAT
AGTGGAATAGGTTGAAAATGGTG
Found at i:48486127 original size:100 final size:100
Alignment explanation
Indices: 48485981--48486977 Score: 1510
Period size: 100 Copynumber: 10.0 Consensus size: 100
48485971 CTTATCTCCT
* * * * * *
48485981 AGGCGATGCAGTGGAATAGATTAAAGCCACAACTGCGAATCTTGCTTTCCCGACATTGCAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
*
48486046 AAAGATTAAAGCTATAACAGCGAATCTTACTTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
*
48486081 AAGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
* * *
48486146 AAGGATTAAAGCTACAACAGTGAATCTTACTTCTC
66 AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
*
48486181 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGTGAATCATGCTTCCCCGACATTGCAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
* *
48486246 AAAGATTAAAGCTACAACAGTGAAGCTTACTTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
* *
48486281 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGACAAATCATGCTTCCCCGACATTGCAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
*
48486346 AATGATTAAAGCTACAACAGCGAATCTTACTTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
* * * * * *
48486381 AGGTGGTGTAGTGGAACAGATTAAAGCCATAACGACGAATCTTTCTTCCCTGACATTGCAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
*
48486446 AAAGATTAAAGCTACAACAGAGAATCTTACTTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
*
48486481 AGGCGGTGTAGTGGAACAGATTAAAGCCACAATGGCGAATCATGCTTCCCCGACATTGCAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
*
48486546 AAAGATTAAAGCTACAACAGCGAATCTTCCTTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
** *
48486581 AGATGGTGTAGTGGAACAGATTAAAGCCACAACGGTGAATCATGCTTCCCCGACATTGCAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
*
48486646 AAAGATTAAAGCTACAACAACGAATCTTACTTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
* * * *
48486681 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCAAATCTTACTTTCCCGACATTGCAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
* *
48486746 AAAGATTAAAGCTACAACAGTGAATCTTATTTCCC
66 AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
* ** *
48486781 AGGCGGTGTAGTGGAACAGATTGAAGCCACAATAGCGAATCATGCTTCCCCGACATTGCAATTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
* * *
48486846 AAAGACTGAAGCTACAAC-GATGAATCTTACTTCCC
66 AAAGATTAAAGCTACAACAG-CGAATCTTACTTCCC
* * * * * *
48486881 AGGCGGTGCAGTGGAATAGATTAAAGCCACAACGACAAATCTTGCTTCCCCGACATTGTAGTTAA
1 AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
* **
48486946 AAAGATTGAAGCTACAATGGCGAATCTTACTT
66 AAAGATTAAAGCTACAACAGCGAATCTTACTT
48486978 TCCAAAAGTT
Statistics
Matches: 816, Mismatches: 79, Indels: 4
0.91 0.09 0.00
Matches are distributed among these distances:
99 1 0.00
100 814 1.00
101 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (100 bp):
AGGCGGTGTAGTGGAACAGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAA
AAAGATTAAAGCTACAACAGCGAATCTTACTTCCC
Found at i:48486856 original size:50 final size:50
Alignment explanation
Indices: 48485998--48486977 Score: 674
Period size: 50 Copynumber: 19.6 Consensus size: 50
48485988 GCAGTGGAAT
* * *
48485998 AGATTAAAGCCACAACTGCGAATCTTGCTTTCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * ** * ** *
48486048 AGATTAAAGCTATAACAGCGAATCTTACTT-CCCAAGCGGTGTAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGA-CATTGCAGTTAAAA
* * *
48486098 AGATTAAAGCCACAACGGCGAATCATGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * * ** * ** *
48486148 GGATTAAAGCTACAACAGTGAATCTTACTTCTCAGGCGGTGTAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * *
48486198 AGATTAAAGCCACAACGGTGAATCATGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * ** * ** *
48486248 AGATTAAAGCTACAACAGTGAAGCTTACTTCCCAGGCGGTGTAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * *
48486298 AGATTAAAGCCACAAC-GACAAATCATGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAG-CGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * **** * ** *
48486348 TGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGTGGTGTAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * *
48486398 AGATTAAAGCCATAAC-GACGAATCTTTCTTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAG-CGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * ** * ** *
48486448 AGATTAAAGCTACAACAGAGAATCTTACTTCCCAGGCGGTGTAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
** * *
48486498 AGATTAAAGCCACAATGGCGAATCATGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * *** * ** *
48486548 AGATTAAAGCTACAACAGCGAATCTTCCTTCCCAGATGGTGTAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * *
48486598 AGATTAAAGCCACAACGGTGAATCATGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * ** * ** *
48486648 AGATTAAAGCTACAACAACGAATCTTACTTCCCAGGCGGTGTAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * *
48486698 AGATTAAAGCCACAACGGCAAATCTTACTTTCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * ** * ** *
48486748 AGATTAAAGCTACAACAGTGAATCTTATTTCCCAGGCGGTGTAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * *
48486798 AGATTGAAGCCACAATAGCGAATCATGCTTCCCCGACATTGCAATTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * * ** ** *
48486848 AGACTGAAGCTACAAC-GATGAATCTTACTTCCCAGGCGGTGCAGTGGAAT
1 AGATTAAAGCCACAACAG-CGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * *
48486898 AGATTAAAGCCACAAC-GACAAATCTTGCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACAACAG-CGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * **
48486948 AGATTGAAGCTACAATGGCGAATCTTACTT
1 AGATTAAAGCCACAACAGCGAATCTTACTT
48486978 TCCAAAAGTT
Statistics
Matches: 674, Mismatches: 248, Indels: 16
0.72 0.26 0.02
Matches are distributed among these distances:
49 7 0.01
50 660 0.98
51 7 0.01
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACAACAGCGAATCTTACTTCCCCGACATTGCAGTTAAAA
Found at i:48490179 original size:14 final size:13
Alignment explanation
Indices: 48490160--48490219 Score: 59
Period size: 14 Copynumber: 4.5 Consensus size: 13
48490150 TGATAATTTA
48490160 TTTTTCTATTTCAC
1 TTTTTCTATTTC-C
*
48490174 TTTTTCTATTTCTT
1 TTTTTCTATTTC-C
* *
48490188 TTTTTCTGTTT-T
1 TTTTTCTATTTCC
*
48490200 TTTTTCTTTTTCC
1 TTTTTCTATTTCC
48490213 TTTTTCT
1 TTTTTCT
48490220 TTTATGCTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
12 11 0.28
13 7 0.17
14 22 0.55
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTTTCTATTTCC
Found at i:48499281 original size:34 final size:34
Alignment explanation
Indices: 48499238--48499306 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
48499228 TATATATATG
* * *
48499238 TATATATATCTACACAAACAAAGTAATGTTAACT
1 TATATATATCAACAAAAACAAAGTAATGTGAACT
* *
48499272 TATATATATCAATAAAAAGAAAGTAATGTGAACT
1 TATATATATCAACAAAAACAAAGTAATGTGAACT
48499306 T
1 T
48499307 CAATTCAACT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.49, C:0.10, G:0.09, T:0.32
Consensus pattern (34 bp):
TATATATATCAACAAAAACAAAGTAATGTGAACT
Found at i:48502277 original size:709 final size:709
Alignment explanation
Indices: 48499272--48507783 Score: 13823
Period size: 708 Copynumber: 12.0 Consensus size: 709
48499262 AATGTTAACT
* * * *
48499272 TATATATATCAATAAAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTCAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* * *
48499337 TGAGACCGAAAGGATATCCTAGT-GTACATACCTTTATTATGAACGCGTTAAGTAGTGAGACCAA
66 TGAGACCGAAAGGATATCCTA-TCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAA
*
48499401 AAAGAGATCTATGTGCCTAGGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATG
130 AAAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATG
* * * * * *
48499466 AGACTAAGAGAAGATTACGAGTTATGAGTGGTGAGTGATAGCTTCGAAGCATGTTTATTAACACA
195 AGACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCA
* * *
48499531 GTGAGTAATTACTAGATTAATTGACCATTGCTTTGATAATTTGCATAG-TCTAAGGCAAGGGGGA
260 GTGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGA
** *
48499595 AGTGATTAGAATATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTGGGTT
325 AGTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTT
48499660 GCACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGGA-AATCA
390 GCACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTT-GATAATCA
* *
48499724 CATTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTAGAATACTCCTTGTTCCCTTGTAACACT
454 CATTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACT
* * *
48499789 ATAACTATTACATCTCGACATTGTACACTTGCAATTAAAACCTTTCTTTAAAATTATTTTAAAAT
519 ATAAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAAT
*
48499854 TTTTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTCATTATCAAATAAGAATATAT
584 TTTTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATAT
* *
48499919 ATCCTGCCTTAATAGATAAAATTTGAAATTCAAATTACAAAATGGAATAAAGATATATATG
649 ATCCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
*
48499980 TATATAAATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* * * *
48500045 TGAGACCGAAAGGATATCTTATCGTGCATAACATTATTATGAACGCGTTAAGTAGTGAGA-CTAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* *
48500109 AAGAGATCTATGTGTCGAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
* * *
48500174 GACTGAGAGGTGATTCCGAGTTACGAGTGGTGAGTGATACCTTCGATGCATGTTTATTAACTCAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
* * * * * *
48500239 TGAGCAATTAATAGATTATTTGACCATTTCTTTGGTAATTTGCACAGTTTTAAGGCAAGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
* *
48500304 ATGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTCAATTTCTTCATTATTATTATTCGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* * * *
48500369 CACTATTAACTCTCAAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGGTAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
48500434 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
* * *
48500499 AAATATTACATCTCAACATTGTACACTTGTAATTAAAACCTTACTTTAAAATTATTTTATAATTT
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
*
48500564 TTTTGTTTTCTACGCATGCATGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
586 TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
* *
48500629 CCTGCCTTAAGAGATAAAATTTAAAATTCAAATTAAAAAATGGAATAAAGATATATATG
651 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
48500688 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
*
48500753 TGAGACTG-AAGTGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAA
66 TGAGACCGAAAG-GATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAA
*
48500817 AAAGAGATCTATGTGCCTAAGTGAGATC-ATGAGGAGATCTTAGGTGGTAATTTCTTGCTAGGAT
130 AAAGAGATCTATGTGCCTAAGTGAGATCGA-GAGGAGATCTTAGGTGGTAATTTCTAGCTAGGAT
**
48500881 GAGACTGAGAGGAGATTCTAAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTC
194 GAGACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTC
* *
48500946 AGTGAGCAATTAATAGATCAATTGACCATTACTTTGATAATCTGCATAGTTCTAAGGC-AGGGGG
259 AGTGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGG
* *
48501010 AAGTTATTAGGTTATTTAGTTTTGTTGATAACTTAAATGTAATTTCTTCATTATTATTATTCGGT
324 AAGTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGT
* *
48501075 TGCACTAATAATTCTCGAATTGATTAGATTAGTAATTGCTTAATTAACATTTGACTTGATAATCA
389 TGCACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCA
* * ** * **
48501140 CATTTACCAATTTAGCAATTCCTTCGACTTGATCCTTTTAATACTCCTTGTTCCCTTGTAATGCT
454 CATTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACT
* *
48501205 ATAAATATTACATCTCGACATTGTACACTTGCAATTAAAACATTGCTTTAAAATTATTTTACAAT
519 ATAAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAA-
** *
48501270 TTTTTTTGTTTTCTACGCATGCGTGCAG--AGTCATCTACATATTTATTATCAAATAAGAATTTA
583 TTTTTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATA
** *
48501333 TATCCTGCCAAAACAGATAAAATTTAAAATTCCAATTACAAAATGGAATAAAGATATATATG
648 TATCCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
48501395 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* *
48501460 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAACGCATTAAGTAGTGAGACCAAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* * * *
48501525 AAGAGATCTATGTGCGTAAGTGAGATCAAGAGGAGATCTTAGGTGGTAATTTTTAGCTAGGATAA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
* **
48501590 GACTGAGTGGAGATTCCGAGTTACGAGTGGTGAGTTTTATCTTCGAAGCATGTTTATTAACTCAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
*
48501655 TGAGCAATTAATAGATTAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
* *
48501720 GTGATTAGGTTATTTAGTTTTGTTGATTACTTAAATTTAATTTCTTCATTATTATTATTTGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* *
48501785 CACTAATAATTCCCGAATTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
* * *
48501850 TTTACCAATTTAGCAATTCATTGGCCTTGATCCTTAGAATAGTCCATGTTCCCTTGTAACACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
* * *
48501915 AAACATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAATTTATTTTATAATAT
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
* * * * * *
48501980 TTTGGTTTTTTACGCATGCGAT-CGGACAATCAACTACAGCTTTATTAACAAATAAGAATATATA
586 TTTTGTTTTCTACGCATGCG-TGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATA
* *
48502044 TCCTACCTTAACGGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
650 TCCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
* *
48502104 TATATATATTTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGAGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* *
48502169 TGAGACCGAAAGGATATCCTATCCTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGAACAAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* * *
48502234 AAGATATCTATGTGCCTAAGTGAGATTGAGAGGAGATCTTAGGTGGTAATTTATAGCTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
* * * *
48502299 GACTAAGAGAAGACTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACACAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
*
48502364 AGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
48502429 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* * *
48502494 CACTAATAATTCTCGAACTGATTAGATTAGCAATTACTTAATTAATATTTGACTTGACAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
*
48502559 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTAGAATACTCCATGTTCCCTTGTAACACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
* *
48502624 AAATATTACATCTCGACATTGTCCACTTGCAATTAAAACCTTTCTTTAAAAATTATTTTATAATT
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTT-AAAATTATTTTATAATT
*
48502689 TTTTTGTTTTCTATGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATA
585 TTTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATA
48502754 TCCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
650 TCCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
* *
48502814 TGTATATATCTACATAAAGAAAGTAATGTAAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* * *
48502879 TGAGACCGAAAGGATATCCTATCGTCCATAACATTATTATGAATGCATTAAGTAGTGAGACCAAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* * * * *
48502944 AAGAGATCTACGTGCTTAAGTGAGATCGAGAGGAGATCTGAGGTGGTAATTTTTTGCTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
* * * *
48503009 GACTGAAAGGAGATTCCGAGTTATGAGTAGTGAGTGATATCTTCGATGCATGTTTATTAACTCAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
** *
48503074 TGAGCAATTTTTAGATCAATTGACCATTACTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
* *
48503139 GTTATTAGGTTATTTAGTTTTGTTGATTACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* *
48503204 CACTAATAATTCCCGAATTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
* * * * *
48503269 TTTCCCAATTTACCAATTCCTTGGCCTTGATCCTTAGAATAGTCCATGTTCCCTTGCAACACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
* * * *
48503334 CAACATTCCATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAATTTATTTTATAATTT
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
* * * * *
48503399 TTTTGTTTTTTACGCATGCGTTCGGACAGTCAACTACAGCTTTATTAACAAATAAGAATATATAT
586 TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
* *
48503464 CTTACCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
651 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
* *
48503523 TATATATATCTACATAAAGAAAGTAATGGGAACATCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* * *
48503588 TGAGACCGAAAGGATATCCTATCCTCCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAC
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
*
48503653 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTATAGCTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
* * * *
48503718 GACTAAGAGAAGACTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAA
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
* * *
48503783 AGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCACAGTTCTAAGGCACGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
* * **
48503848 GTGATAAGGTTATTTAGTTTTGTTGATAACTTAAATGTAATTTCTTCATTATTATTATTCAATTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* * * *
48503913 CACTAATAATTCTTGAAGTGATTAGATTAGTAATTGCTTAATTAACATTTGACTTGAGAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
* *
48503978 TTTACCAATTTAGCAA-----------T--TCCTTGGAATACTCCATGTTCCCTTTTAATACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
*
48504030 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTATAATTATTTTATAA---
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
* * * * *
48504092 TTTTGTTTTCTACGTATGCGTCCAGACAGTGATCTACATCTTTATTATCAAGTAAGAATATATAT
586 TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
*
48504157 CCCGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
651 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
*
48504216 TATATAAATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* * * *
48504281 TGAGACCGAAAGGATATCTTATCGTGCATAACATTATTATGAACGCGTTAAGTAGTGAGA-CTAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* *
48504345 AAGAGATCTATGTGTCGAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
* * *
48504410 GACTGAGAGGTGATTCCGAGTTACGAGTGGTGAGTGATACCTTCGATGCATGTTTATTAACTCAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
* * * * * *
48504475 TGAGCAATTAATAGATTATTTGACCATTTCTTTGGTAATTTGCACAGTTTTAAGGCAAGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
* * *
48504540 GTGATTAGGTTACTTAGTTTTGTTGATAACTTAAATTCAATTTCTTGATTATTATTATTCGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* *
48504605 CACTATTAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGGTAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
48504670 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
* *
48504735 AAATATTACATCTCGACATTGTACACTTGTAATTAAAACCTTACTTTAAAATTATTTTATAATTT
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
48504800 TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
586 TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
*
48504865 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAATGATATATATG
651 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
48504924 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
48504989 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* *
48505054 AAGAGATCTATGTGCCTAAGTGAGATCGTGAGGAGATCTTAGGTGGTAATTTCTTGCTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
48505119 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
* * * * *
48505184 TGAGCAATTAATAAATCAATTAACCATTACTTCGATAATCTGCATAGTTCTAAGGC-AGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
* *
48505248 GTTATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTAATATTATTCGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* *
48505313 CACTAATAATTCTCGAATTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTAATAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
* * * * *
48505378 TTTACTAATTTAGCAATTCCTTGTCCTTGATCTTTGGAATACTCCATCTTCCCTTGTAATACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
*
48505443 AAATATTACATCTCGACATTGTACACTTGCAACTAAAACCTTGCTTTAAAATTATTTTATAA--T
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
* *
48505506 TTTT-TTTTCTACACATGCGT-CGAGACAGTCATCTACATCTTTATTATCAAATAAGAATATATA
586 TTTTGTTTTCTACGCATGCGTGC-AGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATA
* *
48505569 TCCTTCCTTAACAGATAAAATTTAAAATTCAAAGTACAAAATGGAATAAAGATATATATG
650 TCCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
* *
48505629 TATATAAATCTACATAAAGAAAGTAATGTCAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* * * *
48505694 TGAGACCGAAAGGATATCTTATCGTGCATAACATTATTATGAACGCGTTAAGTAGTGAGA-CTAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* *
48505758 AAGAGATCTATGTGTCGAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
* * *
48505823 GACTGAGAGGTGATTCCGAGTTACGAGTGGTGAGTGATACCTTCGATGCATGTTTATTAACTCAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
* * * * * *
48505888 TGAGCAATTAATAGATTATTTGACCATTTCTTTGGTAATTTGCACAGTTTTAAGGCAAGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
* * *
48505953 GTGATTAGGTTACTTAGTTTTGTTGATAACTTAAATTCAATTTCTTGATTATTATTATTCGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* *
48506018 CACTATTAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGGTAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
48506083 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
* *
48506148 AAATATTACATCTCGACATTGTACACTTGTAATTAAAACCTTACTTTAAAATTATTTTATAATTT
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
48506213 TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
586 TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
*
48506278 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAATGATATATATG
651 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
48506337 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
48506402 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* *
48506467 AAGAGATCTATGTGCCTAAGTGAGATCGTGAGGAGATCTTAGGTGGTAATTTCTTGCTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
48506532 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
* * * * *
48506597 TGAGCAATTAATAAATCAATTAACCATTACTTCGATAATCTGCATAGTTCTAAGGC-AGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
* *
48506661 GTTATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTAATATTATTCGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* *
48506726 CACTAATAATTCTCGAATTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTAATAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
* * * * *
48506791 TTTACTAATTTAGCAATTCCTTGTCCTTGATCTTTGGAATACTCCATCTTCCCTTGTAATACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
*
48506856 AAATATTACATCTCGACATTGTACACTTGCAACTAAAACCTTGCTTTAAAATTATTTTATAA--T
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
* *
48506919 TTTT-TTTTCTACACATGCGT-CGAGACAGTCATCTACATCTTTATTATCAAATAAGAATATATA
586 TTTTGTTTTCTACGCATGCGTGC-AGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATA
* *
48506982 TCCTTCCTTAACAGATAAAATTTAAAATTCAAAGTACAAAATGGAATAAAGATATATATG
650 TCCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
* *
48507042 TATATAAATCTACATAAAGAAAGTAATGTCAACTTCAATTCAACTATTCACCTATGTGAGATAGG
1 TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
* * *
48507107 TGAGACCGAAAGGATATCCTATCATGCATAACTTTATTATGAACGTGTTAAGTAGTGAGACCAAA
66 TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
* * *
48507172 AAGAGATCTATATGCCTAGGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGTTAGGATGA
131 AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
* * *
48507237 GACTAAGACGTGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
196 GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
* * *
48507302 TGAGGAATTAATAGATTAATTGACCATTGCTTTGATAATTTGCATAGTTTTAAGGCAAGGGGGAA
261 TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
*
48507367 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTCAATTTCTTCATTATTATTATTCGGTTG
326 GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
* * *
48507432 CAGTAATAATTCTTGAACTAATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
391 CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
48507497 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
456 TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
* *
48507562 AAATATTACATCTCGACATTGTACACTTGTAATTAAAACCTTACTTTAAAATTATTTTATAA--T
521 AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
* * * *
48507625 TTTT-TTTAC-ACGCATGCATGCGGATAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
586 TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
*
48507688 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTAGAAAATGGAATAAAGATATATATATG
651 CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAG--ATATATATG
*
48507749 TATATATATCTACATAAAGAAAGTAATGTTAACTT
1 TATATATATCTACATAAAGAAAGTAATGTGAACTT
48507784 ATATATCTAC
Statistics
Matches: 7217, Mismatches: 543, Indels: 89
0.92 0.07 0.01
Matches are distributed among these distances:
692 313 0.04
693 229 0.03
696 87 0.01
698 1 0.00
703 1 0.00
704 174 0.02
705 1073 0.15
706 269 0.04
707 621 0.09
708 2068 0.29
709 1729 0.24
710 652 0.09
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (709 bp):
TATATATATCTACATAAAGAAAGTAATGTGAACTTCAATTCAACTATTCACCTATGTGAGATAGG
TGAGACCGAAAGGATATCCTATCGTGCATAACTTTATTATGAATGCGTTAAGTAGTGAGACCAAA
AAGAGATCTATGTGCCTAAGTGAGATCGAGAGGAGATCTTAGGTGGTAATTTCTAGCTAGGATGA
GACTGAGAGGAGATTCCGAGTTACGAGTGGTGAGTGATATCTTCGAAGCATGTTTATTAACTCAG
TGAGCAATTAATAGATCAATTGACCATTGCTTTGATAATTTGCATAGTTCTAAGGCAAGGGGGAA
GTGATTAGGTTATTTAGTTTTGTTGATAACTTAAATTTAATTTCTTCATTATTATTATTCGGTTG
CACTAATAATTCTCGAACTGATTAGATTAGTAATTGCTTAATTAATATTTGACTTGATAATCACA
TTTACCAATTTAGCAATTCCTTGGCCTTGATCCTTGGAATACTCCATGTTCCCTTGTAACACTAT
AAATATTACATCTCGACATTGTACACTTGCAATTAAAACCTTGCTTTAAAATTATTTTATAATTT
TTTTGTTTTCTACGCATGCGTGCAGACAGTCATCTACAGCTTTATTATCAAATAAGAATATATAT
CCTGCCTTAACAGATAAAATTTAAAATTCAAATTACAAAATGGAATAAAGATATATATG
Found at i:48507792 original size:32 final size:32
Alignment explanation
Indices: 48507751--48507815 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
48507741 TATATATGTA
48507751 TATATATCTACATAAAGAAAGTAATGTTAACT
1 TATATATCTACATAAAGAAAGTAATGTTAACT
48507783 TATATATCTACATAAAGAAAGTAATGTTAACT
1 TATATATCTACATAAAGAAAGTAATGTTAACT
48507815 T
1 T
48507816 CAATTCAACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.35
Consensus pattern (32 bp):
TATATATCTACATAAAGAAAGTAATGTTAACT
Found at i:48508841 original size:28 final size:27
Alignment explanation
Indices: 48508799--48508858 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
48508789 TCCATCATAT
* * *
48508799 AAAGAAAGTAAAAATTATGTTCAAAAAG
1 AAAGAAAGTAAAAATCAT-ATCAAAAAA
**
48508827 AAAGAAAGTGGAAATCATATCAAAAAA
1 AAAGAAAGTAAAAATCATATCAAAAAA
48508854 AAAGA
1 AAAGA
48508859 CTTATAGTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.63, C:0.05, G:0.15, T:0.17
Consensus pattern (27 bp):
AAAGAAAGTAAAAATCATATCAAAAAA
Found at i:48511472 original size:43 final size:43
Alignment explanation
Indices: 48511400--48511636 Score: 196
Period size: 43 Copynumber: 5.5 Consensus size: 43
48511390 GCTAAGTTTG
* *
48511400 GCGGCGCTTATCCCACAAACGCC-ACTAAAGGTCATGCTCTTTA
1 GCGGCGCTTATTCCACAAACGCCGA-TAAAGGTCATGTTCTTTA
* *
48511443 GCGGCGCTTATTCCACAAGCGTCGATAAAGGTCATGTTCTTTA
1 GCGGCGCTTATTCCACAAACGCCGATAAAGGTCATGTTCTTTA
* * *
48511486 GCAGCGCTTA-TCTCAAAAACGCCGTTAAAGGTCATGTTCTTTA
1 GCGGCGCTTATTC-CACAAACGCCGATAAAGGTCATGTTCTTTA
* * * * * * * *
48511529 GCAGCGCTTATCCCACAATCGTCGCTATAGATCTTGAATTC--TA
1 GCGGCGCTTATTCCACAAACGCCGATAAAGGTCATG--TTCTTTA
* * *
48511572 GCGGCGCTT-TTCCCGCAAGCGCCGCTAAAGGTCATGTTCTTTA
1 GCGGCGCTTATT-CCACAAACGCCGATAAAGGTCATGTTCTTTA
* * * *
48511615 TCGGTGCTTTTTCCAAAAACGC
1 GCGGCGCTTATTCCACAAACGC
48511637 AGTAATAGAT
Statistics
Matches: 155, Mismatches: 30, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
41 3 0.02
42 3 0.02
43 142 0.92
44 4 0.03
45 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (43 bp):
GCGGCGCTTATTCCACAAACGCCGATAAAGGTCATGTTCTTTA
Found at i:48511579 original size:86 final size:85
Alignment explanation
Indices: 48511400--48511614 Score: 252
Period size: 86 Copynumber: 2.5 Consensus size: 85
48511390 GCTAAGTTTG
* * * *
48511400 GCGGCGCTTATCCCACAAACGCCACTAAAGGTCATGCTCTTTAGCGGCGCTTATTCCACAAGCGT
1 GCGGCGCTTATCCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCAGCGCTTATCCCACAAGCGT
*
48511465 CGATAAAGGTCATGTTCTTTA
66 CGATAAAGATCATGTTC-TTA
* * * * *
48511486 GCAGCGCTTATCTCAAAAACGCCGTTAAAGGTCATGTTCTTTAGCAGCGCTTATCCCACAATCGT
1 GCGGCGCTTATCCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCAGCGCTTATCCCACAAGCGT
* * *
48511551 CGCTATAGATCTTGAATTC-TA
66 CGATAAAGATCATG--TTCTTA
* * *
48511572 GCGGCGCTTTTCCCGCAAGCGCCGCTAAAGGTCATGTTCTTTA
1 GCGGCGCTTATCCCACAAACGCCGCTAAAGGTCATGTTCTTTA
48511615 TCGGTGCTTT
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
86 104 0.97
88 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (85 bp):
GCGGCGCTTATCCCACAAACGCCGCTAAAGGTCATGTTCTTTAGCAGCGCTTATCCCACAAGCGT
CGATAAAGATCATGTTCTTA
Found at i:48512032 original size:21 final size:21
Alignment explanation
Indices: 48511993--48512037 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
48511983 CTCTGCTCTA
* *
48511993 CTTCCCTCGCTGCAGCCTCCG
1 CTTCCCTCGCTCCAGCCTCAG
48512014 CTTCCCTCGCTTCCA-CCTCAG
1 CTTCCCTCGC-TCCAGCCTCAG
48512035 CTT
1 CTT
48512038 TAAGTTGCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.07, C:0.51, G:0.13, T:0.29
Consensus pattern (21 bp):
CTTCCCTCGCTCCAGCCTCAG
Found at i:48517555 original size:16 final size:16
Alignment explanation
Indices: 48517536--48517865 Score: 125
Period size: 16 Copynumber: 20.1 Consensus size: 16
48517526 TATTAAGTAA
48517536 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
*
48517552 ATTATATAAGTTATGT
1 ATTATGTAAGTTATGT
*
48517568 AAGTTACGT-A-TTATGT
1 -A-TTATGTAAGTTATGT
*
48517584 AAGCTATGTAA-TT-TGT
1 -A-TTATGTAAGTTATGT
*
48517600 ATTTTATGTAAGTTATTT
1 A--TTATGTAAGTTATGT
*
48517618 ATTATGTAAGCTATGT
1 ATTATGTAAGTTATGT
48517634 AAGTTATGT-A-TTATGT
1 -A-TTATGTAAGTTATGT
*
48517650 AAGCTATGTCATAGACTT-T-T
1 -A-TTATGT-A-AG--TTATGT
* *
48517670 -TTATGTAAGTTGTAT
1 ATTATGTAAGTTATGT
* *
48517685 TTTATGTAAGTTATTT
1 ATTATGTAAGTTATGT
* * *
48517701 ACTATGTAAGCTACGT
1 ATTATGTAAGTTATGT
*
48517717 AAGTTATGT-A-TCATGT
1 -A-TTATGTAAGTTATGT
* *
48517733 AAGCTATGTAAGTTGTGT
1 -A-TTATGTAAGTTATGT
*
48517751 ATTATGTAAGCTATGT
1 ATTATGTAAGTTATGT
*
48517767 ATTATGTTAGTTATGT
1 ATTATGTAAGTTATGT
48517783 AAGTTATGT-A-TTATGT
1 -A-TTATGTAAGTTATGT
*
48517799 ATGTTATGTAAGTTGTGT
1 A--TTATGTAAGTTATGT
** *
48517817 AGAATGTAAGCTATGT
1 ATTATGTAAGTTATGT
*
48517833 AAGTTATGTGAGTTA--T
1 -A-TTATGTAAGTTATGT
48517849 A-TATGTAAGTTATGT
1 ATTATGTAAGTTATGT
48517864 AT
1 AT
48517866 AATATTAATT
Statistics
Matches: 241, Mismatches: 42, Indels: 62
0.70 0.12 0.18
Matches are distributed among these distances:
13 12 0.05
14 1 0.00
15 8 0.03
16 151 0.63
17 22 0.09
18 42 0.17
19 1 0.00
20 1 0.00
21 1 0.00
22 2 0.01
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:48517565 original size:25 final size:25
Alignment explanation
Indices: 48517524--48517602 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
48517514 TATATATTTC
*
48517524 TGTATTA-AGTAAATTATGTAAGTTA
1 TGTATTATA-TAAGTTATGTAAGTTA
48517549 TGTATTATATAAGTTATGTAAGTTA
1 TGTATTATATAAGTTATGTAAGTTA
* * *
48517574 CGTATTATGTAAGCTATGTAA-TT-
1 TGTATTATATAAGTTATGTAAGTTA
48517597 TGTATT
1 TGTATT
48517603 TTATGTAAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
23 5 0.10
24 2 0.04
25 40 0.83
26 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (25 bp):
TGTATTATATAAGTTATGTAAGTTA
Found at i:48517625 original size:25 final size:25
Alignment explanation
Indices: 48517604--48517792 Score: 166
Period size: 25 Copynumber: 7.2 Consensus size: 25
48517594 ATTTGTATTT
48517604 TATGTAAGTTATTTATTATGTAAGC
1 TATGTAAGTTATTTATTATGTAAGC
*
48517629 TATGTAAGTTATGTATTATGTAAGC
1 TATGTAAGTTATTTATTATGTAAGC
* ***
48517654 TATGTCATAGACTTTTTTATGTAAGTTGTATTT
1 TATGT-A-AG--TTATTTAT-T-A--TGTAAGC
*
48517687 TATGTAAGTTATTTACTATGTAAGC
1 TATGTAAGTTATTTATTATGTAAGC
* * *
48517712 TACGTAAGTTATGTATCATGTAAGC
1 TATGTAAGTTATTTATTATGTAAGC
* *
48517737 TATGTAAGTTGTGTATTATGTAAGC
1 TATGTAAGTTATTTATTATGTAAGC
*
48517762 TATGT-A-TTATGTTAGTTATGTAAGT
1 TATGTAAGTTAT-TTA-TTATGTAAGC
48517787 TATGTA
1 TATGTA
48517793 TTATGTATGT
Statistics
Matches: 132, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
23 3 0.02
24 3 0.02
25 95 0.72
26 1 0.01
27 3 0.02
28 1 0.01
29 12 0.09
30 1 0.01
31 3 0.02
32 1 0.01
33 9 0.07
ACGTcount: A:0.30, C:0.05, G:0.19, T:0.47
Consensus pattern (25 bp):
TATGTAAGTTATTTATTATGTAAGC
Found at i:48517635 original size:41 final size:42
Alignment explanation
Indices: 48517536--48517809 Score: 197
Period size: 41 Copynumber: 6.4 Consensus size: 42
48517526 TATTAAGTAA
* * ** *
48517536 ATTATGTAAGTTATGT-ATTATATAAGTTATGTAAGTTACGT
1 ATTATGTAAGCTATGTAATTATGTATTTTATGTAAGTTATGT
*
48517577 ATTATGTAAGCTATGTAATT-TGTATTTTATGTAAGTTATTT
1 ATTATGTAAGCTATGTAATTATGTATTTTATGTAAGTTATGT
*
48517618 ATTATGTAAGCTATGTAAGTTATGTA--TTATGTAAGCTATGT
1 ATTATGTAAGCTATGTAA-TTATGTATTTTATGTAAGTTATGT
**** * *
48517659 CA-TA-GACTTTTTTATGTAAGT-TGTATTTTATGTAAGTTATTT
1 -ATTATG--TAAGCTATGTAATTATGTATTTTATGTAAGTTATGT
* * *
48517701 ACTATGTAAGCTACGTAAGTTATGTATCATGTAAGCTATGTAAGTTGTGT
1 ATTATGTAAGCTATGTAA-TTATGTAT--T-T----TATGTAAGTTATGT
*
48517751 ATTATGTAAGCTATGT-ATTATGT-TAGTTATGTAAGTTATGT
1 ATTATGTAAGCTATGTAATTATGTAT-TTTATGTAAGTTATGT
* *
48517792 ATTATGTATGTTATGTAA
1 ATTATGTAAGCTATGTAA
48517810 GTTGTGTAGA
Statistics
Matches: 184, Mismatches: 29, Indels: 39
0.73 0.12 0.15
Matches are distributed among these distances:
40 5 0.03
41 100 0.54
42 31 0.17
43 10 0.05
45 2 0.01
46 2 0.01
47 1 0.01
48 6 0.03
49 1 0.01
50 26 0.14
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.47
Consensus pattern (42 bp):
ATTATGTAAGCTATGTAATTATGTATTTTATGTAAGTTATGT
Found at i:48517691 original size:108 final size:107
Alignment explanation
Indices: 48517562--48517809 Score: 279
Period size: 108 Copynumber: 2.3 Consensus size: 107
48517552 ATTATATAAG
* *** * * *
48517562 TTATGTAAGTTACGTATTATGTAAGCTATGTAATTTGTATTTTATGTAAGTTATTTATTATGTAA
1 TTATGTAAGTTA-GTATTATGTAAGCTATGTAATATGTAAGCTACGTAAGTTATGTATCATGTAA
48517627 GCTATGTAAGTTATGTATTATGTAAGCTATGTCATAGACTTTT
65 GCTATGTAAGTTATGTATTATGTAAGCTATGTCATAGACTTTT
* * *
48517670 TTATGTAAGTT-GTATTTTATGTAAGTTATTTACTATGTAAGCTACGTAAGTTATGTATCATGTA
1 TTATGTAAGTTAGTA--TTATGTAAGCTATGTAATATGTAAGCTACGTAAGTTATGTATCATGTA
* **
48517734 AGCTATGTAAGTTGTGTATTATGTAAGCTATGT-ATTATG--TTAG
64 AGCTATGTAAGTTATGTATTATGTAAGCTATGTCA-TA-GACTTTT
* *
48517777 TTATGTAAGTTATGTATTATGTATGTTATGTAA
1 TTATGTAAGTTA-GTATTATGTAAGCTATGTAA
48517810 GTTGTGTAGA
Statistics
Matches: 118, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
106 3 0.03
107 28 0.24
108 83 0.70
109 4 0.03
ACGTcount: A:0.29, C:0.05, G:0.18, T:0.48
Consensus pattern (107 bp):
TTATGTAAGTTAGTATTATGTAAGCTATGTAATATGTAAGCTACGTAAGTTATGTATCATGTAAG
CTATGTAAGTTATGTATTATGTAAGCTATGTCATAGACTTTT
Done.