Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 157 of 313
Found at i:49676818 original size:25 final size:25
Alignment explanation
Indices: 49676770--49676818 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
49676760 TGATCCCTTT
* *
49676770 AACTATTATACGAACCTTTTTGTAA
1 AACTATTATACGAACCCTTATGTAA
*
49676795 AACTATTATGCGAACCCTTATGTA
1 AACTATTATACGAACCCTTATGTA
49676819 TATTGTACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (25 bp):
AACTATTATACGAACCCTTATGTAA
Found at i:49678424 original size:17 final size:16
Alignment explanation
Indices: 49678340--49678416 Score: 66
Period size: 16 Copynumber: 4.4 Consensus size: 16
49678330 ATTTAACCAT
49678340 AATTATATACAAAAATCAA
1 AATTATA-A-AAAAAT-AA
*
49678359 AA-TCTAAAAAAATCAA
1 AATTATAAAAAAAT-AA
*
49678375 AATTTTAAAAAATTATAA
1 AATTATAAAAAA--ATAA
49678393 AATTATAAAAAAATAA
1 AATTATAAAAAAATAA
49678409 AATATATA
1 AAT-TATA
49678417 CATAAATACA
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
16 18 0.35
17 13 0.25
18 16 0.31
19 4 0.08
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (16 bp):
AATTATAAAAAAATAA
Found at i:49679578 original size:14 final size:16
Alignment explanation
Indices: 49679554--49679594 Score: 59
Period size: 14 Copynumber: 2.6 Consensus size: 16
49679544 TTTAATCTTT
49679554 TAAATATTATAAAAT-A
1 TAAA-ATTATAAAATAA
49679570 T-AAATTATAAAATAA
1 TAAAATTATAAAATAA
49679585 TAAAATTATA
1 TAAAATTATA
49679595 TTTTTATGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 10 0.43
15 4 0.17
16 9 0.39
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TAAAATTATAAAATAA
Found at i:49680728 original size:20 final size:20
Alignment explanation
Indices: 49680703--49680752 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
49680693 TGGCTTAAAA
49680703 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
49680723 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
49680740 GTGGTAGTGGATT
1 TTGGTAGTGGATT
49680753 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:49685367 original size:20 final size:20
Alignment explanation
Indices: 49685342--49685391 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
49685332 TGGCTTAAAA
49685342 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
49685362 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
49685379 GTGGTAGTGGATT
1 TTGGTAGTGGATT
49685392 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:49694142 original size:17 final size:17
Alignment explanation
Indices: 49694120--49694153 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
49694110 ATCCACTAAT
*
49694120 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
49694137 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
49694154 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:49698781 original size:17 final size:17
Alignment explanation
Indices: 49698759--49698792 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
49698749 ATCCACTAAT
*
49698759 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
49698776 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
49698793 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:49703420 original size:17 final size:17
Alignment explanation
Indices: 49703398--49703431 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
49703388 ATCCACTAAT
*
49703398 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
49703415 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
49703432 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:49711300 original size:17 final size:17
Alignment explanation
Indices: 49711267--49711300 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
49711257 ACATATATTT
*
49711267 GGAATTTAATTTTTCTA
1 GGAATTTAATTTCTCTA
*
49711284 GGAATTTAGTTTCTCTA
1 GGAATTTAATTTCTCTA
49711301 TTTTTTAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (17 bp):
GGAATTTAATTTCTCTA
Found at i:49716195 original size:126 final size:126
Alignment explanation
Indices: 49715966--49716365 Score: 579
Period size: 126 Copynumber: 3.2 Consensus size: 126
49715956 CTAGGCTAAG
* * * ** * *
49715966 CAGGAAGTACTGTAGAAAAAGAGCGTCCACGTGAAAGCTTTTTTTAGCAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAAAACGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* *
49716031 AT-TATGCTTGAATCATTTTTGACACTATTTTTTTAGAACCGTCTTCTCAAAATTATTTTTT
66 ATCT-TGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
49716092 CAGGAACTACTATAGAAAAAAAACGTTCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAAAACGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
49716157 ATCTTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
66 ATCTTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
49716218 TAGGAACTACTGTAGAAAAAGAACGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
1 CAGGAACTACTGTAGAAAAAAAACGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* ** * * *
49716283 ATCCTGCTTGAAGTGTTTTTGACATTATCTTTTCAAAACCGTCTTCTCAAAATTAATTTTTT
66 ATCTTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-ATTTTTT
* *
49716345 TA-AAACTACTGTAGAAAAAAA
1 CAGGAACTACTGTAGAAAAAAA
49716366 CAAAATCCTT
Statistics
Matches: 249, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
126 239 0.96
127 10 0.04
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (126 bp):
CAGGAACTACTGTAGAAAAAAAACGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
ATCTTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:49716580 original size:33 final size:33
Alignment explanation
Indices: 49716447--49716580 Score: 146
Period size: 33 Copynumber: 4.0 Consensus size: 33
49716437 TAAACACAAA
** *
49716447 AATT-ATTTTTTTAAAAAAACTAAACCCTAATTT
1 AATTAATTTTTTT-AAAACTCTAAACCTTAATTT
* * *
49716480 AATTAATATTCTTAAAAACTTTAAACCTTAATTT
1 AATTAAT-TTTTTTAAAACTCTAAACCTTAATTT
* *
49716514 AATTAATTTATTTAAAACCCTAAAACC-TAATTT
1 AATTAATTTTTTTAAAACTCT-AAACCTTAATTT
*
49716547 AATTAATTTTTTTAAAACTCTAAACCTTGATTT
1 AATTAATTTTTTTAAAACTCTAAACCTTAATTT
49716580 A
1 A
49716581 TATTTTAAAA
Statistics
Matches: 84, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
32 5 0.06
33 45 0.54
34 30 0.36
35 4 0.05
ACGTcount: A:0.43, C:0.13, G:0.01, T:0.43
Consensus pattern (33 bp):
AATTAATTTTTTTAAAACTCTAAACCTTAATTT
Found at i:49717226 original size:15 final size:16
Alignment explanation
Indices: 49717196--49717228 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
49717186 ATTCAATTAG
*
49717196 ATTTTATTATAATTTT
1 ATTTTATTAAAATTTT
49717212 ATTTT-TTAAAATTTT
1 ATTTTATTAAAATTTT
49717227 AT
1 AT
49717229 ACAACTTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTTTATTAAAATTTT
Found at i:49718123 original size:16 final size:16
Alignment explanation
Indices: 49718102--49718156 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
49718092 ATACAATTCT
*
49718102 AAAAAATTTAAACCCG
1 AAAAAATTTAAATCCG
*
49718118 AAAAAATTTGAATCC-
1 AAAAAATTTAAATCCG
*
49718133 AAAAAATTTTAAATCTG
1 AAAAAA-TTTAAATCCG
49718150 AAAAAAT
1 AAAAAAT
49718157 CCAAACTCGA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 6 0.18
16 21 0.64
17 6 0.18
ACGTcount: A:0.58, C:0.11, G:0.05, T:0.25
Consensus pattern (16 bp):
AAAAAATTTAAATCCG
Found at i:49718702 original size:11 final size:12
Alignment explanation
Indices: 49718674--49718701 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
49718664 TCAAGACACC
49718674 AAAAATAATTAA
1 AAAAATAATTAA
49718686 AAAAATAATTAA
1 AAAAATAATTAA
49718698 AAAA
1 AAAA
49718702 TTTTATGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAATAATTAA
Found at i:49723177 original size:16 final size:16
Alignment explanation
Indices: 49723153--49723206 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
49723143 TTTGGTTCGC
* *
49723153 TGTATTGGATCAGAGG
1 TGTAATGGATTAGAGG
49723169 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
*
49723185 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
49723201 TGTAAT
1 TGTAAT
49723207 AGCAAATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.28, C:0.02, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:49723461 original size:18 final size:17
Alignment explanation
Indices: 49723440--49723474 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
49723430 TTATTATTAA
*
49723440 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
49723458 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
49723475 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:49723528 original size:157 final size:157
Alignment explanation
Indices: 49723327--49723643 Score: 589
Period size: 157 Copynumber: 2.0 Consensus size: 157
49723317 TAGAATACCC
*
49723327 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAATTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAATTTAATAAGATTATTA
* *
49723392 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
49723457 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
49723484 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAATTTAATAAGATTATTA
49723549 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
49723614 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
49723641 TTA
1 TTA
49723644 ATATTCTTAT
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 155 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAATTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:49723614 original size:16 final size:16
Alignment explanation
Indices: 49723577--49723618 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
49723567 TTAATCATAT
*
49723577 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
49723593 TT-AAATATATTATAA
1 TTAAAATATATTATAA
49723608 TTAAAATATAT
1 TTAAAATATAT
49723619 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:49723625 original size:14 final size:15
Alignment explanation
Indices: 49723586--49723627 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
49723576 TTTAAACATA
*
49723586 ATTATTATTAAATAT
1 ATTATAATTAAATAT
49723601 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
49723615 A-TATAATTTAATA
1 ATTATAATTAAATA
49723628 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:49735737 original size:27 final size:26
Alignment explanation
Indices: 49735714--49735879 Score: 170
Period size: 27 Copynumber: 6.2 Consensus size: 26
49735704 ATAAATGATT
* *
49735714 GAAATACCCTCATAGGGTAAAATGATC
1 GAAATACCC-CATAAGGTAAAATGACC
* * *
49735741 GAAACACCCCTGTAAGGTAAAATGACT
1 GAAATACCCC-ATAAGGTAAAATGACC
* *
49735768 GAAATACCCTCATAGGGTAAAATGATC
1 GAAATACCC-CATAAGGTAAAATGACC
* * *
49735795 GAAACACCCCTGTAAGGTAAAATGACT
1 GAAATACCCC-ATAAGGTAAAATGACC
**
49735822 GAAATACCCTCATAATATAAAATGACC
1 GAAATACCC-CATAAGGTAAAATGACC
*
49735849 GAAATACCCCATAGGGTAAAATGACC
1 GAAATACCCCATAAGGTAAAATGACC
49735875 GAAAT
1 GAAAT
49735880 TGACTGTTAT
Statistics
Matches: 112, Mismatches: 23, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
26 21 0.19
27 89 0.79
28 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (26 bp):
GAAATACCCCATAAGGTAAAATGACC
Found at i:49735771 original size:54 final size:54
Alignment explanation
Indices: 49735706--49735879 Score: 260
Period size: 54 Copynumber: 3.2 Consensus size: 54
49735696 AGAGGTCAAT
*
49735706 AAATGATTGAAATACCCTCATAGGGTAAAATGATCGAAACACCCCTGTAAGGTA
1 AAATGACTGAAATACCCTCATAGGGTAAAATGATCGAAACACCCCTGTAAGGTA
49735760 AAATGACTGAAATACCCTCATAGGGTAAAATGATCGAAACACCCCTGTAAGGTA
1 AAATGACTGAAATACCCTCATAGGGTAAAATGATCGAAACACCCCTGTAAGGTA
*** * * * *
49735814 AAATGACTGAAATACCCTCATAATATAAAATGACCGAAATACCCC-ATAGGGTA
1 AAATGACTGAAATACCCTCATAGGGTAAAATGATCGAAACACCCCTGTAAGGTA
*
49735867 AAATGACCGAAAT
1 AAATGACTGAAAT
49735880 TGACTGTTAT
Statistics
Matches: 111, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
53 18 0.16
54 93 0.84
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.21
Consensus pattern (54 bp):
AAATGACTGAAATACCCTCATAGGGTAAAATGATCGAAACACCCCTGTAAGGTA
Found at i:49736102 original size:26 final size:26
Alignment explanation
Indices: 49736073--49736126 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
49736063 TTTGCCACAT
*
49736073 ATACTGTTATTGGCAGCTTCGCTGCG
1 ATACTATTATTGGCAGCTTCGCTGCG
*
49736099 ATACTATTATTGGCAGCTTTGCTGCG
1 ATACTATTATTGGCAGCTTCGCTGCG
49736125 AT
1 AT
49736127 TTTGGTGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (26 bp):
ATACTATTATTGGCAGCTTCGCTGCG
Found at i:49736259 original size:28 final size:28
Alignment explanation
Indices: 49736227--49736290 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
49736217 ATTATTGCAA
**
49736227 TGTTACTGTATTGGGCTAA-GACCTACAC
1 TGTTACTGTATCAGGCTAAGGACC-ACAC
*
49736255 TGTTACTGTATCAGGCTAAGGTCCACAC
1 TGTTACTGTATCAGGCTAAGGACCACAC
49736283 TG-TACTGT
1 TGTTACTGT
49736291 TACTGAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 6 0.19
28 23 0.72
29 3 0.09
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (28 bp):
TGTTACTGTATCAGGCTAAGGACCACAC
Found at i:49742160 original size:284 final size:284
Alignment explanation
Indices: 49741650--49742217 Score: 1109
Period size: 284 Copynumber: 2.0 Consensus size: 284
49741640 GATTACTGAG
49741650 GCTTGTAAAGAAACTATTTGGTTGAAGAGACTCTTTAGTGAACTTAATGAAGACCTTCAAATCAA
1 GCTTGTAAAGAAACTATTTGGTTGAAGAGACTCTTTAGTGAACTTAATGAAGACCTTCAAATCAA
49741715 TATAGTATTTTGTGACAGTCAGAGTGTCATCTTCCTTACAAAAGATCAAATATGAGAGAACAAAA
66 TATAGTATTTTGTGACAGTCAGAGTGTCATCTTCCTTACAAAAGATCAAATATGAGAGAACAAAA
49741780 CACATTGATGTTCGATATCATTTTGTTCGTGATATTGTTACTCATGGTGATATTATTGTGAGCAA
131 CACATTGATGTTCGATATCATTTTGTTCGTGATATTGTTACTCATGGTGATATTATTGTGAGCAA
49741845 AATTAGTACTTATGAAAATCCTGCAGATATGATGACTAAGTCACTTCCTATAACCAAGTTTGAAC
196 AATTAGTACTTATGAAAATCCTGCAGATATGATGACTAAGTCACTTCCTATAACCAAGTTTGAAC
* *
49741910 ATTGTTTAGACTTGGTTGATGTTT
261 ATTGTTGAGACTTGGGTGATGTTT
49741934 GCTTGTAAAGAAACTATTTGGTTGAAGAGACTCTTTAGTGAACTTAATGAAGACCTTCAAATCAA
1 GCTTGTAAAGAAACTATTTGGTTGAAGAGACTCTTTAGTGAACTTAATGAAGACCTTCAAATCAA
49741999 TATAGTATTTTGTGACAGTCAGAGTGTCATCTTCCTTACAAAAGATCAAATATGAGAGAACAAAA
66 TATAGTATTTTGTGACAGTCAGAGTGTCATCTTCCTTACAAAAGATCAAATATGAGAGAACAAAA
49742064 CACATTGATGTTCGATATCATTTTGTTCGTGATATTGTTACTCATGGTGATATTATTGTGAGCAA
131 CACATTGATGTTCGATATCATTTTGTTCGTGATATTGTTACTCATGGTGATATTATTGTGAGCAA
*
49742129 AATTAGTACTTATGAAAATCCTGCAGATATGATGACTAAGTCACTTCCTATAACCAAGTTTGAAG
196 AATTAGTACTTATGAAAATCCTGCAGATATGATGACTAAGTCACTTCCTATAACCAAGTTTGAAC
49742194 ATTGTTGAGACTTGGGTGATGTTT
261 ATTGTTGAGACTTGGGTGATGTTT
49742218 ATTGTTGAAG
Statistics
Matches: 281, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
284 281 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (284 bp):
GCTTGTAAAGAAACTATTTGGTTGAAGAGACTCTTTAGTGAACTTAATGAAGACCTTCAAATCAA
TATAGTATTTTGTGACAGTCAGAGTGTCATCTTCCTTACAAAAGATCAAATATGAGAGAACAAAA
CACATTGATGTTCGATATCATTTTGTTCGTGATATTGTTACTCATGGTGATATTATTGTGAGCAA
AATTAGTACTTATGAAAATCCTGCAGATATGATGACTAAGTCACTTCCTATAACCAAGTTTGAAC
ATTGTTGAGACTTGGGTGATGTTT
Found at i:49747581 original size:16 final size:17
Alignment explanation
Indices: 49747562--49747594 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
49747552 TTAAAAAATG
*
49747562 ATAACAAAA-AAAGAAA
1 ATAAAAAAACAAAGAAA
49747578 ATAAAAAAACAAAGAAA
1 ATAAAAAAACAAAGAAA
49747595 GAAAGAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (17 bp):
ATAAAAAAACAAAGAAA
Found at i:49747727 original size:6 final size:6
Alignment explanation
Indices: 49747716--49747752 Score: 65
Period size: 6 Copynumber: 6.0 Consensus size: 6
49747706 AAGAAATCCC
49747716 CAAATG CAAATG CAAATG CAAATG CAAATGG CAAATG
1 CAAATG CAAATG CAAATG CAAATG CAAAT-G CAAATG
49747753 AACTTTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.49, C:0.16, G:0.19, T:0.16
Consensus pattern (6 bp):
CAAATG
Found at i:49748537 original size:15 final size:17
Alignment explanation
Indices: 49748519--49748552 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
49748509 TTATTATAAT
49748519 AATATA-ATAAATT-TA
1 AATATATATAAATTATA
49748534 AATATATATAAATTATA
1 AATATATATAAATTATA
49748551 AA
1 AA
49748553 AAATTATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 7 0.41
17 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AATATATATAAATTATA
Found at i:49748569 original size:16 final size:16
Alignment explanation
Indices: 49748548--49748578 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49748538 TATATAAATT
49748548 ATAAAAAATTATTAAC
1 ATAAAAAATTATTAAC
*
49748564 ATAAAAAATTGTTAA
1 ATAAAAAATTATTAA
49748579 TATACTATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.32
Consensus pattern (16 bp):
ATAAAAAATTATTAAC
Found at i:49751198 original size:14 final size:15
Alignment explanation
Indices: 49751176--49751205 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
49751166 AAAAATAAGG
49751176 AATTAAAAGAAGGAA
1 AATTAAAAGAAGGAA
49751191 AATT-AAAGAAGGAA
1 AATTAAAAGAAGGAA
49751205 A
1 A
49751206 TATAACACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.67, C:0.00, G:0.20, T:0.13
Consensus pattern (15 bp):
AATTAAAAGAAGGAA
Found at i:49752721 original size:25 final size:25
Alignment explanation
Indices: 49752693--49752764 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 25
49752683 ACACTCTCTC
*
49752693 GAGCCATATAACGGGAAGCTCATGT
1 GAGCCATATAACGGGAAGCTCATGA
* * * *
49752718 GAGCCATGTAAAGGGAAGCTTATAA
1 GAGCCATATAACGGGAAGCTCATGA
*
49752743 GAGCCATAT--CAGGAAGCTCATG
1 GAGCCATATAACGGGAAGCTCATG
49752765 CGATCCAATA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
23 9 0.24
25 28 0.76
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCATGA
Found at i:49752866 original size:24 final size:25
Alignment explanation
Indices: 49752849--49752909 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 25
49752839 GAGCCTTATT
49752849 GGGAAGCTCACAAAGAGCCAATTAAC
1 GGGAAGCTCACAAAGAGCC-ATTAAC
49752875 GGGAAGCTCACAAAGAGCCA-TAATC
1 GGGAAGCTCACAAAGAGCCATTAA-C
*
49752900 AGGAAGCTCA
1 GGGAAGCTCA
49752910 TAAGAGCTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 3 0.09
25 11 0.33
26 19 0.58
ACGTcount: A:0.41, C:0.23, G:0.25, T:0.11
Consensus pattern (25 bp):
GGGAAGCTCACAAAGAGCCATTAAC
Found at i:49754847 original size:41 final size:41
Alignment explanation
Indices: 49754784--49754888 Score: 158
Period size: 41 Copynumber: 2.6 Consensus size: 41
49754774 TTTAAACAGA
* *
49754784 TTCACTGGCACTTCA-CCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACCGGCACTT-AGCCCGCTAGGCTTATAGCCTGATTCAG
*
49754825 TTCACCGGTACTTAGCCCGCTAGGCTTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCCGCTAGGCTTATAGCCTGATTCAG
*
49754866 TTCACCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCCGCTAG
49754889 ACGTAAAGTC
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 1 0.02
41 57 0.98
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCCGCTAGGCTTATAGCCTGATTCAG
Found at i:49756333 original size:28 final size:31
Alignment explanation
Indices: 49756301--49756359 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 31
49756291 TGTTTTGTTT
49756301 TTATTATAATAA-CATTAT-AAT-ATATAAA
1 TTATTATAATAACCATTATAAATAATATAAA
* *
49756329 TTATTATTATAACCTTTATAAATAATATAAA
1 TTATTATAATAACCATTATAAATAATATAAA
49756360 AACTATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 11 0.42
29 5 0.19
30 3 0.12
31 7 0.27
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (31 bp):
TTATTATAATAACCATTATAAATAATATAAA
Found at i:49763176 original size:20 final size:20
Alignment explanation
Indices: 49763148--49763186 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
49763138 ATTTTGGTCC
*
49763148 CTATGTTATATTCAAATTTG
1 CTATATTATATTCAAATTTG
49763168 CTATATTATATTCAAATTT
1 CTATATTATATTCAAATTT
49763187 TTATAGTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.51
Consensus pattern (20 bp):
CTATATTATATTCAAATTTG
Found at i:49766894 original size:151 final size:151
Alignment explanation
Indices: 49766615--49766917 Score: 516
Period size: 151 Copynumber: 2.0 Consensus size: 151
49766605 GGGAGTGTGC
49766615 TTTGTATTTATGAGCTGACATTTCGATGAGAAAGAGCCGACATTGTGACGAAACGACTACAACGT
1 TTTGTATTTATGAGCTGACATTTCGATGAGAAAGAGCCGACATTGTGACGAAACGACTACAACGT
* * * *
49766680 CTTGACAAGAAGATTGGCCATGTCCTGACGATGTGAAGAATGGCGTCTCGACGAGGTGCATGCGA
66 CTTAACAAGAAGATTGGCCACGTCCCGACGATGTGAAGAATGGCGTCTCGACGAGGTGAATGCGA
49766745 CGTTGCGACATGGCAACGTGT
131 CGTTGCGACATGGCAACGTGT
* * *
49766766 TTTGTATTTATGAGCTGACATTTCGATGAGGAAGAGCCGACATTGTGACGAACCGACTACGACGT
1 TTTGTATTTATGAGCTGACATTTCGATGAGAAAGAGCCGACATTGTGACGAAACGACTACAACGT
** *
49766831 CTTAATGAGAAGATTGGCCACGTCCCGACGATGTGAAGAATGGTGTCTCGACGAGGTGAATGCGA
66 CTTAACAAGAAGATTGGCCACGTCCCGACGATGTGAAGAATGGCGTCTCGACGAGGTGAATGCGA
49766896 CGTTGCGACATGGCAACGTGT
131 CGTTGCGACATGGCAACGTGT
49766917 T
1 T
49766918 CCACAATTCA
Statistics
Matches: 142, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 142 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (151 bp):
TTTGTATTTATGAGCTGACATTTCGATGAGAAAGAGCCGACATTGTGACGAAACGACTACAACGT
CTTAACAAGAAGATTGGCCACGTCCCGACGATGTGAAGAATGGCGTCTCGACGAGGTGAATGCGA
CGTTGCGACATGGCAACGTGT
Found at i:49768773 original size:21 final size:22
Alignment explanation
Indices: 49768748--49768790 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
49768738 TTTTAATATA
49768748 TATGT-ATATTTATTGTTTTCT
1 TATGTAATATTTATTGTTTTCT
*
49768769 TATGTACATATTTATTTTTTTC
1 TATGTA-ATATTTATTGTTTTC
49768791 AACTAATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
23 14 0.74
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.65
Consensus pattern (22 bp):
TATGTAATATTTATTGTTTTCT
Found at i:49768867 original size:29 final size:26
Alignment explanation
Indices: 49768830--49768882 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
49768820 TACATATATT
*
49768830 TATTTTTTAATTAATTTTGATAATATAGA
1 TATTATTTAATT-ATTTT--TAATATAGA
49768859 TATTATTTAATTATTTTTAATATA
1 TATTATTTAATTATTTTTAATATA
49768883 TTTTACATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
28 5 0.22
29 11 0.48
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTATTTAATTATTTTTAATATAGA
Found at i:49773962 original size:17 final size:16
Alignment explanation
Indices: 49773940--49773977 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
49773930 TGAGTTTCAC
49773940 AAAAAAA-AACAAATGTG
1 AAAAAAATAA-AAATG-G
49773957 AAAAAAATAAAAATGG
1 AAAAAAATAAAAATGG
49773973 AAAAA
1 AAAAA
49773978 GTAAAATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 12 0.60
18 2 0.10
ACGTcount: A:0.76, C:0.03, G:0.11, T:0.11
Consensus pattern (16 bp):
AAAAAAATAAAAATGG
Found at i:49774306 original size:25 final size:26
Alignment explanation
Indices: 49774260--49774308 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
49774250 TGAATTTGTT
49774260 TGTTCTTGAAATACTTTATTCTTTGC
1 TGTTCTTGAAATACTTTATTCTTTGC
* *
49774286 TGTTCTTG-AATATTTTTTTCTTT
1 TGTTCTTGAAATACTTTATTCTTT
49774309 TCAAGACACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.16, C:0.12, G:0.10, T:0.61
Consensus pattern (26 bp):
TGTTCTTGAAATACTTTATTCTTTGC
Found at i:49775228 original size:44 final size:44
Alignment explanation
Indices: 49775179--49775344 Score: 244
Period size: 44 Copynumber: 3.8 Consensus size: 44
49775169 ATCAAAAAAC
* *
49775179 CCTATCTCCCTGGTCAACAGTGGAATAGATTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
*
49775223 CCTATCTCCCTGGTCAGCAATGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* **
49775267 CGTATCTCATTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
49775311 CCTATCTCCCTGAG-CAGCAGTAGAGTAGGTTGAA
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
49775345 AATAGCAGAT
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
44 108 0.99
45 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:49775991 original size:267 final size:267
Alignment explanation
Indices: 49775510--49776056 Score: 871
Period size: 267 Copynumber: 2.0 Consensus size: 267
49775500 CGTTGCAAAG
* * *
49775510 AAAAAGATTGAAGCCACAACGGCGAATATTATTTCCCTGGCGTTGTAGCGGAGCAGATTGAAGCC
1 AAAAAGATTGAAGCCACAACGACGAATATTATTTCCCTGGCATTGTAGCAGAGCAGATTGAAGCC
* *
49775575 ACGACGGCGAATCTAATATACCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCGGATTAAAGC
66 ACAACGGCGAATCTAATATACCTGGCGTTAAGGCTTGGATTAGCTGAAGTAGAGCGGATTAAAGC
* * *
49775640 TGTGGGTAGTGAATCCTATCTCTTTGGCATTACAGTGGAGCAGATTAAAGCCGCAACGGTGAATC
131 TGTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTGGAGCAGATTAAAGCCGCAACGGCGAATC
* * *
49775705 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCCCCAACAT
196 TTACTTCCCTGGCGGTGTAGTGGAACAAATTAAAGCTACGACAGCGAATCTCGTTTCCCCAACAT
49775770 TGAAATT
261 TGAAATT
* * *
49775777 TAAAAGATTGAAGCCGCAACGACGAATATTATTTCCCTGGCATTGTAGCAGAGTAGATTGAAGCC
1 AAAAAGATTGAAGCCACAACGACGAATATTATTTCCCTGGCATTGTAGCAGAGCAGATTGAAGCC
* *
49775842 ACAACGGCGAATCTTATCT-CCTTGGCGTTAAGGCTTGGATTAGCTGAAGTAGAGCGGATTAAAG
66 ACAACGGCGAATCTAATATACC-TGGCGTTAAGGCTTGGATTAGCTGAAGTAGAGCGGATTAAAG
**
49775906 CTGTGGGCAGCGAATCCTATCTCTTTGGTGTTACAGTGGAGCAGATTAAAGCCGCAACGGCGAAT
130 CTGTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTGGAGCAGATTAAAGCCGCAACGGCGAAT
* * * *
49775971 CTTACTTCCTTGGTGGTGTAGTGGAACAAATTAAAGCTACGACAGCGAATCTTGTTTCCCCCACA
195 CTTACTTCCCTGGCGGTGTAGTGGAACAAATTAAAGCTACGACAGCGAATCTCGTTTCCCCAACA
*
49776036 TTGCAATT
260 TTGAAATT
49776044 AAAAAGATTGAAG
1 AAAAAGATTGAAG
49776057 ATATTAGATC
Statistics
Matches: 255, Mismatches: 24, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
266 2 0.01
267 253 0.99
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (267 bp):
AAAAAGATTGAAGCCACAACGACGAATATTATTTCCCTGGCATTGTAGCAGAGCAGATTGAAGCC
ACAACGGCGAATCTAATATACCTGGCGTTAAGGCTTGGATTAGCTGAAGTAGAGCGGATTAAAGC
TGTGGGCAGCGAATCCTATCTCTTTGGCATTACAGTGGAGCAGATTAAAGCCGCAACGGCGAATC
TTACTTCCCTGGCGGTGTAGTGGAACAAATTAAAGCTACGACAGCGAATCTCGTTTCCCCAACAT
TGAAATT
Found at i:49776115 original size:44 final size:45
Alignment explanation
Indices: 49776064--49776225 Score: 138
Period size: 44 Copynumber: 3.6 Consensus size: 45
49776054 AAGATATTAG
*
49776064 ATCTTATCTCCCT-AAGGTTGCAGTGGAGCAGACCGAATA-AAC-A
1 ATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACCGAAGATAACGA
* * **
49776107 AGTCTTATC-CCTCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCGA
1 A-TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGACCGAAGATAACGA
* *** * *
49776153 ATCTTATCTCCCTGAAGTTGCAATGGAGCAG-GTTAAAACTAA-TA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAGA-TAACGA
*
49776197 ATCCTATCTCCCTGAAGTTGCAGTGGAGC
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGC
49776226 GGATTAAAAC
Statistics
Matches: 97, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
43 3 0.03
44 61 0.63
45 29 0.30
46 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAGATAACGA
Found at i:49776172 original size:45 final size:43
Alignment explanation
Indices: 49776064--49776268 Score: 132
Period size: 44 Copynumber: 4.7 Consensus size: 43
49776054 AAGATATTAG
*
49776064 ATCTTATCTCCCT-AAGGTTGCAGTGGAGCAGACCGAATAAACA
1 ATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGACCGAAGAAACA
* * **
49776107 AGTCTTATC-CCTCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCGA
1 A-TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGACCGAAGA-AAC-A
* *** * *
49776153 ATCTTATCTCCCTGAAGTTGCAATGGAGCAG-GTTAAAACTAATA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAGA--AACA
* * **
49776197 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGA-TTAA-AACCACA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAGAA--ACA
* *
49776240 GATCTTAGCTCTCTGAAGTTGCAGTGGAG
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAG
49776269 TAGATCACAT
Statistics
Matches: 131, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.01
43 6 0.05
44 91 0.69
45 29 0.22
46 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACCGAAGAAACA
Found at i:49776233 original size:44 final size:44
Alignment explanation
Indices: 49776152--49776268 Score: 148
Period size: 44 Copynumber: 2.7 Consensus size: 44
49776142 GAAGATGGCG
* *
49776152 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTAAAACTA-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAACCACA
*
49776195 TAATCCTATCTCCCTGAAGTTGCAGTGGAGC-GGATTAAAACCACA
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAAACCACA
* * *
49776240 GATCTTAGCTCTCTGAAGTTGCAGTGGAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG
49776269 TAGATCACAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
43 2 0.03
44 61 0.95
45 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAACCACA
Found at i:49778047 original size:21 final size:22
Alignment explanation
Indices: 49778022--49778064 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
49778012 TTAATATATA
49778022 TATGT-ATATTTATTGTTTTCT
1 TATGTAATATTTATTGTTTTCT
*
49778043 TATGTACATATTTATTTTTTTC
1 TATGTA-ATATTTATTGTTTTC
49778065 AACTAATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
23 14 0.74
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.65
Consensus pattern (22 bp):
TATGTAATATTTATTGTTTTCT
Found at i:49778141 original size:29 final size:26
Alignment explanation
Indices: 49778104--49778156 Score: 70
Period size: 29 Copynumber: 1.9 Consensus size: 26
49778094 TACATATATT
*
49778104 TATTTTTTAATTAATTTTGATAATATAGA
1 TATTATTTAATT-ATTTT--TAATATAGA
49778133 TATTATTTAATTATTTTTAATATA
1 TATTATTTAATTATTTTTAATATA
49778157 TTTTACATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
28 5 0.22
29 11 0.48
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTATTTAATTATTTTTAATATAGA
Found at i:49778577 original size:21 final size:21
Alignment explanation
Indices: 49778530--49778578 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
49778520 ATGTCATGGA
*
49778530 TTATTTTTTTTATATATATAT
1 TTATTTTGTTTATATATATAT
* * * *
49778551 TCATTTTGTTTATTTATTTGT
1 TTATTTTGTTTATATATATAT
49778572 TTATTTT
1 TTATTTT
49778579 ATTTCTATGT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (21 bp):
TTATTTTGTTTATATATATAT
Found at i:49780624 original size:38 final size:38
Alignment explanation
Indices: 49780582--49780660 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
49780572 ACCAACCGTC
49780582 CCCCAAAAGACAAATCCAACAATAGG-ACTTAAACCTTA
1 CCCCAAAAGACAAATCCAACAAT-GGAACTTAAACCTTA
*
49780620 CCCCAAGAGACAAATCCAACAATGGAACTTAAACCTTA
1 CCCCAAAAGACAAATCCAACAATGGAACTTAAACCTTA
49780658 CCC
1 CCC
49780661 AACACCACGA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
37 2 0.05
38 37 0.95
ACGTcount: A:0.44, C:0.32, G:0.09, T:0.15
Consensus pattern (38 bp):
CCCCAAAAGACAAATCCAACAATGGAACTTAAACCTTA
Found at i:49786107 original size:91 final size:90
Alignment explanation
Indices: 49786000--49786169 Score: 206
Period size: 91 Copynumber: 1.9 Consensus size: 90
49785990 CAAGTACCAT
* * * *
49786000 AATAATACAAATATTGA-AAGTTC-AGATATCACATTAAATATTTTTAAAGTATA-AG-TATCAC
1 AATAATACAAATATTGATAA-TTCAAG-TACCACAATAAACATTTTTAAA--ATACAGATACCAC
49786061 ATTAAACATTTTATGAAAATACATGTATCA
62 ATTAAACATTTTAT-AAAATACATGTATCA
*
49786091 AATAATACATAA-ATTGATAATTCAAGTACCACAATAAACATTTTTAAAATACAGATACCATATT
1 AATAATACA-AATATTGATAATTCAAGTACCACAATAAACATTTTTAAAATACAGATACCACATT
49786155 AAACATTTTATAAAA
65 AAACATTTTATAAAA
49786170 CATCAAATAT
Statistics
Matches: 69, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
89 3 0.04
90 6 0.09
91 54 0.78
92 6 0.09
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.34
Consensus pattern (90 bp):
AATAATACAAATATTGATAATTCAAGTACCACAATAAACATTTTTAAAATACAGATACCACATTA
AACATTTTATAAAATACATGTATCA
Found at i:49787765 original size:15 final size:15
Alignment explanation
Indices: 49787745--49787783 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
49787735 GAAAATGATA
49787745 TATTC-TTTAATATCT
1 TATTCTTTTAA-ATCT
49787760 TATTCTTTTAAATCT
1 TATTCTTTTAAATCT
*
49787775 TATTATTTT
1 TATTCTTTT
49787784 GTACCCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTCTTTTAAATCT
Found at i:49788761 original size:15 final size:15
Alignment explanation
Indices: 49788741--49788779 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
49788731 GAAAATGATA
49788741 TATTC-TTTAATATCT
1 TATTCTTTTAA-ATCT
49788756 TATTCTTTTAAATCT
1 TATTCTTTTAAATCT
*
49788771 TATTATTTT
1 TATTCTTTT
49788780 GTACCCATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTCTTTTAAATCT
Found at i:49789214 original size:996 final size:996
Alignment explanation
Indices: 49787282--49789275 Score: 3988
Period size: 996 Copynumber: 2.0 Consensus size: 996
49787272 GGAACAAATC
49787282 TTCAGGTTTCAAATTTGTTCTTCTCATCATTTTTTTATCAATATATACCATGCATGCATGTTTAT
1 TTCAGGTTTCAAATTTGTTCTTCTCATCATTTTTTTATCAATATATACCATGCATGCATGTTTAT
49787347 GAATATCAGTTTAAAAGAAATCTGTTTGACAATTATGTTTAACATATATATTTTGTACATGCTCG
66 GAATATCAGTTTAAAAGAAATCTGTTTGACAATTATGTTTAACATATATATTTTGTACATGCTCG
49787412 GAATATATATAAAAAGATTCCAAGCGATATTCATTATTTGAGTCTGCATTTTTTATTTCTGGATT
131 GAATATATATAAAAAGATTCCAAGCGATATTCATTATTTGAGTCTGCATTTTTTATTTCTGGATT
49787477 CAAATATAGATGTAGATATCTAAATCTAAATTAAACTAATTCCAAAATACTTAAATTTTACTTCC
196 CAAATATAGATGTAGATATCTAAATCTAAATTAAACTAATTCCAAAATACTTAAATTTTACTTCC
49787542 AACAAAATTTGAACACATAGTTTCTTATACATAAAATCATGTTTAACCATCAATATTTGTCCTAA
261 AACAAAATTTGAACACATAGTTTCTTATACATAAAATCATGTTTAACCATCAATATTTGTCCTAA
49787607 ACTTTGATTATAATTTACACAAATTAACAAATTTCACATAAAAATACAATAATTTTTTTTCAAAA
326 ACTTTGATTATAATTTACACAAATTAACAAATTTCACATAAAAATACAATAATTTTTTTTCAAAA
49787672 TTAAACATAAAAACTAATAATAAAATTAAATTAACTATTTTACATATTTTTAAATTTTTATCAGA
391 TTAAACATAAAAACTAATAATAAAATTAAATTAACTATTTTACATATTTTTAAATTTTTATCAGA
49787737 AAATGATATATTCTTTAATATCTTATTCTTTTAAATCTTATTATTTTGTACCCATAAACTTAATT
456 AAATGATATATTCTTTAATATCTTATTCTTTTAAATCTTATTATTTTGTACCCATAAACTTAATT
49787802 CTAGAATAAAATTAGATAATTGGAATAAAAAACTTGTCATTATGGCTTTTGTTATTTGATGAAAT
521 CTAGAATAAAATTAGATAATTGGAATAAAAAACTTGTCATTATGGCTTTTGTTATTTGATGAAAT
49787867 CAAATAGTTAAATTACTTAAAAATTTATTAATATTTATTTAATTAAAATAAATATTATACCTACA
586 CAAATAGTTAAATTACTTAAAAATTTATTAATATTTATTTAATTAAAATAAATATTATACCTACA
49787932 AGTGTTGGGTGCAGTGATAAGTCACATTACACTTCTAATGGAGAATACAAATTTGAACTTGTGAT
651 AGTGTTGGGTGCAGTGATAAGTCACATTACACTTCTAATGGAGAATACAAATTTGAACTTGTGAT
49787997 TTGGACAAGTGTTAACAGGACAGAAGGTGTTGATCTCCCTCTGACTCCACTTGAGATAACGCCTT
716 TTGGACAAGTGTTAACAGGACAGAAGGTGTTGATCTCCCTCTGACTCCACTTGAGATAACGCCTT
49788062 GGTTGACCATCTATCCCCAATCAGAGGAGCGACACCTTCGGTTATCAAAGGTCATTCGCTAGATA
781 GGTTGACCATCTATCCCCAATCAGAGGAGCGACACCTTCGGTTATCAAAGGTCATTCGCTAGATA
49788127 TTCAAGCCCTCTGCTCCTTGATAATGAGATGAACACCCGCTTCTGAGGCACCTGCTTTTATGAAA
846 TTCAAGCCCTCTGCTCCTTGATAATGAGATGAACACCCGCTTCTGAGGCACCTGCTTTTATGAAA
49788192 TGTAACCTTATGTTCCTTGAACCAAGCACCTCCTTAATTATATGTAAGCTTAAACTCTATATGTA
911 TGTAACCTTATGTTCCTTGAACCAAGCACCTCCTTAATTATATGTAAGCTTAAACTCTATATGTA
49788257 TAATTAACTTTATGATAGATT
976 TAATTAACTTTATGATAGATT
49788278 TTCAGGTTTCAAATTTGTTCTTCTCATCATTTTTTTATCAATATATACCATGCATGCATGTTTAT
1 TTCAGGTTTCAAATTTGTTCTTCTCATCATTTTTTTATCAATATATACCATGCATGCATGTTTAT
49788343 GAATATCAGTTTAAAAGAAATCTGTTTGACAATTATGTTTAACATATATATTTTGTACATGCTCG
66 GAATATCAGTTTAAAAGAAATCTGTTTGACAATTATGTTTAACATATATATTTTGTACATGCTCG
49788408 GAATATATATAAAAAGATTCCAAGCGATATTCATTATTTGAGTCTGCATTTTTTATTTCTGGATT
131 GAATATATATAAAAAGATTCCAAGCGATATTCATTATTTGAGTCTGCATTTTTTATTTCTGGATT
49788473 CAAATATAGATGTAGATATCTAAATCTAAATTAAACTAATTCCAAAATACTTAAATTTTACTTCC
196 CAAATATAGATGTAGATATCTAAATCTAAATTAAACTAATTCCAAAATACTTAAATTTTACTTCC
49788538 AACAAAATTTGAACACATAGTTTCTTATACATAAAATCATGTTTAACCATCAATATTTGTCCTAA
261 AACAAAATTTGAACACATAGTTTCTTATACATAAAATCATGTTTAACCATCAATATTTGTCCTAA
49788603 ACTTTGATTATAATTTACACAAATTAACAAATTTCACATAAAAATACAATAATTTTTTTTCAAAA
326 ACTTTGATTATAATTTACACAAATTAACAAATTTCACATAAAAATACAATAATTTTTTTTCAAAA
49788668 TTAAACATAAAAACTAATAATAAAATTAAATTAACTATTTTACATATTTTTAAATTTTTATCAGA
391 TTAAACATAAAAACTAATAATAAAATTAAATTAACTATTTTACATATTTTTAAATTTTTATCAGA
49788733 AAATGATATATTCTTTAATATCTTATTCTTTTAAATCTTATTATTTTGTACCCATAAACTTAATT
456 AAATGATATATTCTTTAATATCTTATTCTTTTAAATCTTATTATTTTGTACCCATAAACTTAATT
49788798 CTAGAATAAAATTAGATAATTGGAATAAAAAACTTGTCATTATGGCTTTTGTTATTTGATGAAAT
521 CTAGAATAAAATTAGATAATTGGAATAAAAAACTTGTCATTATGGCTTTTGTTATTTGATGAAAT
49788863 CAAATAGTTAAATTACTTAAAAATTTATTAATATTTATTTAATTAAAATAAATATTATACCTACA
586 CAAATAGTTAAATTACTTAAAAATTTATTAATATTTATTTAATTAAAATAAATATTATACCTACA
49788928 AGTGTTGGGTGCAGTGATAAGTCACATTACACTTCTAATGGAGAATACAAATTTGAACTTGTGAT
651 AGTGTTGGGTGCAGTGATAAGTCACATTACACTTCTAATGGAGAATACAAATTTGAACTTGTGAT
49788993 TTGGACAAGTGTTAACAGGACAGAAGGTGTTGATCTCCCTCTGACTCCACTTGAGATAACGCCTT
716 TTGGACAAGTGTTAACAGGACAGAAGGTGTTGATCTCCCTCTGACTCCACTTGAGATAACGCCTT
49789058 GGTTGACCATCTATCCCCAATCAGAGGAGCGACACCTTCGGTTATCAAAGGTCATTCGCTAGATA
781 GGTTGACCATCTATCCCCAATCAGAGGAGCGACACCTTCGGTTATCAAAGGTCATTCGCTAGATA
49789123 TTCAAGCCCTCTGCTCCTTGATAATGAGATGAACACCCGCTTCTGAGGCACCTGCTTTTATGAAA
846 TTCAAGCCCTCTGCTCCTTGATAATGAGATGAACACCCGCTTCTGAGGCACCTGCTTTTATGAAA
49789188 TGTAACCTTATGTTCCTTGAACCAAGCACCTCCTTAATTATATGTAAGCTTAAACTCTATATGTA
911 TGTAACCTTATGTTCCTTGAACCAAGCACCTCCTTAATTATATGTAAGCTTAAACTCTATATGTA
49789253 TAATTAACTTTATGATAGATT
976 TAATTAACTTTATGATAGATT
49789274 TT
1 TT
49789276 AATATATACA
Statistics
Matches: 998, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
996 998 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (996 bp):
TTCAGGTTTCAAATTTGTTCTTCTCATCATTTTTTTATCAATATATACCATGCATGCATGTTTAT
GAATATCAGTTTAAAAGAAATCTGTTTGACAATTATGTTTAACATATATATTTTGTACATGCTCG
GAATATATATAAAAAGATTCCAAGCGATATTCATTATTTGAGTCTGCATTTTTTATTTCTGGATT
CAAATATAGATGTAGATATCTAAATCTAAATTAAACTAATTCCAAAATACTTAAATTTTACTTCC
AACAAAATTTGAACACATAGTTTCTTATACATAAAATCATGTTTAACCATCAATATTTGTCCTAA
ACTTTGATTATAATTTACACAAATTAACAAATTTCACATAAAAATACAATAATTTTTTTTCAAAA
TTAAACATAAAAACTAATAATAAAATTAAATTAACTATTTTACATATTTTTAAATTTTTATCAGA
AAATGATATATTCTTTAATATCTTATTCTTTTAAATCTTATTATTTTGTACCCATAAACTTAATT
CTAGAATAAAATTAGATAATTGGAATAAAAAACTTGTCATTATGGCTTTTGTTATTTGATGAAAT
CAAATAGTTAAATTACTTAAAAATTTATTAATATTTATTTAATTAAAATAAATATTATACCTACA
AGTGTTGGGTGCAGTGATAAGTCACATTACACTTCTAATGGAGAATACAAATTTGAACTTGTGAT
TTGGACAAGTGTTAACAGGACAGAAGGTGTTGATCTCCCTCTGACTCCACTTGAGATAACGCCTT
GGTTGACCATCTATCCCCAATCAGAGGAGCGACACCTTCGGTTATCAAAGGTCATTCGCTAGATA
TTCAAGCCCTCTGCTCCTTGATAATGAGATGAACACCCGCTTCTGAGGCACCTGCTTTTATGAAA
TGTAACCTTATGTTCCTTGAACCAAGCACCTCCTTAATTATATGTAAGCTTAAACTCTATATGTA
TAATTAACTTTATGATAGATT
Found at i:49793783 original size:24 final size:24
Alignment explanation
Indices: 49793756--49793984 Score: 196
Period size: 24 Copynumber: 9.4 Consensus size: 24
49793746 CAGCTCGCAA
* *
49793756 GAGCGTCCCGTTATTAGCTCTTAT
1 GAGCTTCCCGTTATTGGCTCTTAT
* * *
49793780 GAGCATCTCGATATTGGCTCTCT-T
1 GAGCTTCCCGTTATTGGCTCT-TAT
* * * * * *
49793804 GAACTTCCTGATATTTGGGTCTCAC
1 GAGCTTCCCGTTA-TTGGCTCTTAT
*
49793829 GAGCTTCCCGTTATTTAGCTCTTAT
1 GAGCTTCCCGTTA-TTGGCTCTTAT
*
49793854 GAGCATT-CTGTTATATGGCTCTTAT
1 GAGC-TTCCCGTTAT-TGGCTCTTAT
* **
49793879 GAGCTTCCCGATATTGGCTCACAT
1 GAGCTTCCCGTTATTGGCTCTTAT
49793903 GAGCTTCCCGATTA-TGGCTCTTAT
1 GAGCTTCCCG-TTATTGGCTCTTAT
49793927 GAGCTTCCCGATTA-TGGCTCTTAT
1 GAGCTTCCCG-TTATTGGCTCTTAT
**
49793951 GAGCTTCCCGTTATATGGCTCACAT
1 GAGCTTCCCGTTAT-TGGCTCTTAT
49793976 GAGCTTCCC
1 GAGCTTCCC
49793985 ATAATATGGC
Statistics
Matches: 167, Mismatches: 29, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
23 3 0.02
24 90 0.54
25 72 0.43
26 2 0.01
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (24 bp):
GAGCTTCCCGTTATTGGCTCTTAT
Found at i:49793991 original size:25 final size:25
Alignment explanation
Indices: 49793865--49794029 Score: 189
Period size: 24 Copynumber: 6.7 Consensus size: 25
49793855 AGCATTCTGT
**
49793865 TATATGGCTCTTATGAGCTTCCCGA
1 TATATGGCTCACATGAGCTTCCCGA
49793890 TAT-TGGCTCACATGAGCTTCCCGA
1 TATATGGCTCACATGAGCTTCCCGA
**
49793914 T-TATGGCTCTTATGAGCTTCCCGA
1 TATATGGCTCACATGAGCTTCCCGA
** *
49793938 T-TATGGCTCTTATGAGCTTCCCGT
1 TATATGGCTCACATGAGCTTCCCGA
49793962 TATATGGCTCACATGAGCTTCCC-A
1 TATATGGCTCACATGAGCTTCCCGA
*
49793986 TAATATGGCTCGA-AAGAGCTTCCCGA
1 T-ATATGGCTC-ACATGAGCTTCCCGA
49794012 TTATAT-GCTCACATGAGC
1 -TATATGGCTCACATGAGC
49794030 ATTCTTGAAT
Statistics
Matches: 123, Mismatches: 10, Indels: 14
0.84 0.07 0.10
Matches are distributed among these distances:
23 1 0.01
24 65 0.53
25 50 0.41
26 6 0.05
27 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (25 bp):
TATATGGCTCACATGAGCTTCCCGA
Found at i:49794041 original size:50 final size:49
Alignment explanation
Indices: 49793903--49794042 Score: 133
Period size: 50 Copynumber: 2.8 Consensus size: 49
49793893 TGGCTCACAT
* ** ** * ** *
49793903 GAGCTTCCCGATTAT-GGCTCTTATGAGCTTCCCGATTATGGCTCTTAT
1 GAGCTTCCCGATTATATGCTCACATGAGCTTCATGAATATGGCTCGAAA
49793951 GAGCTTCCCG-TTATATGGCTCACATGAGCTTCCCAT-AATATGGCTCGAAA
1 GAGCTTCCCGATTATAT-GCTCACATGAGCTT--CATGAATATGGCTCGAAA
*
49794001 GAGCTTCCCGATTATATGCTCACATGAGCATTCTTGAATATG
1 GAGCTTCCCGATTATATGCTCACATGAGC-TTCATGAATATG
49794043 AATTGATGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
47 4 0.05
48 10 0.13
49 14 0.19
50 38 0.51
51 9 0.12
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (49 bp):
GAGCTTCCCGATTATATGCTCACATGAGCTTCATGAATATGGCTCGAAA
Found at i:49810417 original size:32 final size:32
Alignment explanation
Indices: 49810381--49810441 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
49810371 TTCTCTTCAT
*
49810381 TTTGAGCAAAAAATGAATCAAAGCAATTATTA
1 TTTGAGCAAAAAATAAATCAAAGCAATTATTA
49810413 TTTGAGCAAAAAATAAATCAAAGCAATTA
1 TTTGAGCAAAAAATAAATCAAAGCAATTA
49810442 CTAAAACCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.52, C:0.10, G:0.11, T:0.26
Consensus pattern (32 bp):
TTTGAGCAAAAAATAAATCAAAGCAATTATTA
Found at i:49817730 original size:3 final size:3
Alignment explanation
Indices: 49817722--49817756 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
49817712 CTAATTCGAA
49817722 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
49817757 TGGTGTGGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:49818632 original size:11 final size:11
Alignment explanation
Indices: 49818616--49818641 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
49818606 TATTTTTTAA
49818616 TTTTAAAATAC
1 TTTTAAAATAC
49818627 TTTTAAAATAC
1 TTTTAAAATAC
49818638 TTTT
1 TTTT
49818642 TTTATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:49818662 original size:20 final size:20
Alignment explanation
Indices: 49818627--49818664 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
49818617 TTTAAAATAC
**
49818627 TTTTAAAATACTTTTTTTAT
1 TTTTAAAATAAATTTTTTAT
49818647 TTTTAAAATAAATTTTTT
1 TTTTAAAATAAATTTTTT
49818665 GTGTTTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTAAAATAAATTTTTTAT
Found at i:49818671 original size:20 final size:20
Alignment explanation
Indices: 49818628--49818671 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
49818618 TTAAAATACT
** *
49818628 TTTAAAATACTTTTTTTATT
1 TTTAAAATAAATTTTTTATG
*
49818648 TTTAAAATAAATTTTTTGTG
1 TTTAAAATAAATTTTTTATG
49818668 TTTA
1 TTTA
49818672 TTAAAAAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTAAAATAAATTTTTTATG
Found at i:49819143 original size:40 final size:42
Alignment explanation
Indices: 49819048--49819143 Score: 97
Period size: 40 Copynumber: 2.3 Consensus size: 42
49819038 TTTTTCCGGC
* *
49819048 AAATCGCGTCCACGTCAGCGCGATGTCAGGGGACGTGCCAGG
1 AAATCGCGTCCACGTCAGCGCGATGTCAGCGGACGTGCCAAG
* * * * * * *
49819090 AAATTGCGGCCACGTCAGCGCGCT-T-TGCTGACGTGGCAAT
1 AAATCGCGTCCACGTCAGCGCGATGTCAGCGGACGTGCCAAG
49819130 AAATCGCGTCCACG
1 AAATCGCGTCCACG
49819144 AGGGGACGAT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
40 21 0.49
41 1 0.02
42 21 0.49
ACGTcount: A:0.22, C:0.29, G:0.31, T:0.18
Consensus pattern (42 bp):
AAATCGCGTCCACGTCAGCGCGATGTCAGCGGACGTGCCAAG
Found at i:49819332 original size:22 final size:22
Alignment explanation
Indices: 49819307--49819360 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
49819297 AAACTAATCC
* *
49819307 TCTCTCAATTTCC-TCTCAATTT
1 TCTCTCAAATTCCTTC-CAAATT
49819329 TCTCTCAAATTCCTTCCAAATT
1 TCTCTCAAATTCCTTCCAAATT
49819351 TCTCTCAAAT
1 TCTCTCAAAT
49819361 CCATATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 27 0.93
23 2 0.07
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.44
Consensus pattern (22 bp):
TCTCTCAAATTCCTTCCAAATT
Found at i:49819359 original size:11 final size:11
Alignment explanation
Indices: 49819307--49819360 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
49819297 AAACTAATCC
49819307 TCTCTC-AATT
1 TCTCTCAAATT
*
49819317 TCCTCTCAATTT
1 T-CTCTCAAATT
49819329 TCTCTCAAATT
1 TCTCTCAAATT
*
49819340 CCT-TCCAAATT
1 TCTCT-CAAATT
49819351 TCTCTCAAAT
1 TCTCTCAAAT
49819361 CCATATTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
10 2 0.06
11 29 0.81
12 5 0.14
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.44
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:49820565 original size:7 final size:7
Alignment explanation
Indices: 49820553--49820578 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
49820543 TAGTCGATTG
49820553 GTATTTA
1 GTATTTA
49820560 GTATTTA
1 GTATTTA
49820567 GTATTTA
1 GTATTTA
49820574 GTATT
1 GTATT
49820579 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:49821256 original size:18 final size:18
Alignment explanation
Indices: 49821229--49821268 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
49821219 CAGGTGCGTT
* *
49821229 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
49821247 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
49821265 TCCT
1 TCCT
49821269 TTTTCGAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:49821898 original size:21 final size:21
Alignment explanation
Indices: 49821842--49822410 Score: 536
Period size: 21 Copynumber: 26.2 Consensus size: 21
49821832 AAAAAACAAT
*
49821842 AACCCTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
**
49821863 AACTTTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
49821885 AACCCTAACACTTAACTTAAT
1 AACCCTAACCCTTAACTTAAA
* * *
49821906 AACCCTAACCCTAAAATTAAT
1 AACCCTAACCCTTAACTTAAA
49821927 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
49821949 AACCATAAACCTTCAACTTAAA
1 AACCCTAACCCTT-AACTTAAA
* * *
49821971 AACCCGCTCCCTAACCATTAAATTTAA
1 AA------CCCTAACCCTTAACTTAAA
* *
49821998 AACCCTAAACCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
49822019 AACCCTAACCCTTAA-TTAAA
1 AACCCTAACCCTTAACTTAAA
49822039 AACCCTAACCCTTAA-TTAAA
1 AACCCTAACCCTTAACTTAAA
*
49822059 AACCCTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
*
49822080 AACCCTAAACCATTAA--TACAA
1 AACCCT-AACCCTTAACTTA-AA
* *
49822101 TTATACCCTAAAGCTTTAACTTAAA
1 --A-ACCCT-AACCCTTAACTTAAA
49822126 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
49822147 AA-CCTAACCCTTAATTTAAA
1 AACCCTAACCCTTAACTTAAA
*
49822167 AACCCTAAACCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* *
49822188 AACCCTAAACCATTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
49822210 AACCCTCACCCTTAAATTAAT
1 AACCCTAACCCTTAACTTAAA
49822231 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
49822253 AACCATAAACCTTTAACTTAAAAA
1 AACCCT-AACCCTTAACTT--AAA
* *
49822277 CCTAACCCTAACCATTAAATTAAA
1 ---AACCCTAACCCTTAACTTAAA
* * *
49822301 AACCATAAACCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* * *
49822322 AATCCTGACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* *
49822343 AACCCTAAACCTTAACTTAAT
1 AACCCTAACCCTTAACTTAAA
49822364 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
49822385 AACCCTAAAACCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
49822407 AACC
1 AACC
49822411 TTAAGATTTT
Statistics
Matches: 461, Mismatches: 61, Indels: 51
0.80 0.11 0.09
Matches are distributed among these distances:
20 61 0.13
21 221 0.48
22 123 0.27
23 2 0.00
24 19 0.04
25 2 0.00
26 12 0.03
27 13 0.03
28 8 0.02
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (21 bp):
AACCCTAACCCTTAACTTAAA
Found at i:49821931 original size:42 final size:42
Alignment explanation
Indices: 49821842--49822410 Score: 518
Period size: 43 Copynumber: 13.1 Consensus size: 42
49821832 AAAAAACAAT
** *
49821842 AACCCTAACCCTTAAATTAAAAACTTTAAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAAAACCCT-AACCCTTAAATTAAA
* * * * *
49821885 AACCCTAACACTTAACTTAATAACCCTAACCCTAAAATTAAT
1 AACCCTAACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
* * * *
49821927 AACCCTAAACCCTTAACTTAAAAACCATAAACCTTCAACTTAAA
1 AACCCT-AACCCTTAAATTAAAAACCCTAACCCTT-AAATTAAA
* * *
49821971 AACCCGCTCCCTAACCATTAAATTTAAAACCCTAAACCTTAAATTAAA
1 AA------CCCTAACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
49822019 AACCCTAACCCTT-AATTAAAAACCCTAACCCTT-AATTAAA
1 AACCCTAACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
*
49822059 AACCCTAACCCTTAAATTAAAAACCCTAAACCATT-AA-TACAA
1 AACCCTAACCCTTAAATTAAAAACCCT-AACCCTTAAATTA-AA
* * * *
49822101 TTATACCCTAAAGCTTTAACTTAAAAACCCTAACCCTTAACTTAAA
1 --A-ACCCT-AACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
* * *
49822147 AA-CCTAACCCTTAATTTAAAAACCCTAAACCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
* * *
49822188 AACCCTAAACCATTAAATTAAAAACCCTCACCCTTAAATTAAT
1 AACCCT-AACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
* * * *
49822231 AACCCTAAACCCTTAACTTAAAAACCATAAACCTTTAACTTAAAAA
1 AACCCT-AACCCTTAAATTAAAAACCCT-AACCCTTAAATT--AAA
* * *
49822277 CCTAACCCTAACCATTAAATTAAAAACCATAAACCTTAAATTAAA
1 ---AACCCTAACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
* * * * *
49822322 AATCCTGACCCTTAAATTAAAAACCCTAAACCTTAACTTAAT
1 AACCCTAACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
* * *
49822364 AACCCTAACCCTTAACTTAAAAACCCTAAAACCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAAAACCCT-AACCCTTAAATTAAA
49822407 AACC
1 AACC
49822411 TTAAGATTTT
Statistics
Matches: 439, Mismatches: 61, Indels: 52
0.80 0.11 0.09
Matches are distributed among these distances:
40 20 0.05
41 67 0.15
42 104 0.24
43 119 0.27
44 19 0.04
45 14 0.03
46 23 0.05
47 11 0.03
48 28 0.06
49 30 0.07
50 4 0.01
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (42 bp):
AACCCTAACCCTTAAATTAAAAACCCTAACCCTTAAATTAAA
Found at i:49822319 original size:26 final size:25
Alignment explanation
Indices: 49822265--49822321 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
49822255 CCATAAACCT
*
49822265 TTAACTTAAAAACCTAACCCTAACCA
1 TTAAATTAAAAACCTAACCCTAA-CA
*
49822291 TTAAATTAAAAACCATAAACCTTAA-A
1 TTAAATTAAAAACC-T-AACCCTAACA
49822317 TTAAA
1 TTAAA
49822322 AATCCTGACC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 19 0.70
27 1 0.04
28 7 0.26
ACGTcount: A:0.53, C:0.21, G:0.00, T:0.26
Consensus pattern (25 bp):
TTAAATTAAAAACCTAACCCTAACA
Found at i:49822616 original size:113 final size:113
Alignment explanation
Indices: 49822418--49822686 Score: 511
Period size: 113 Copynumber: 2.4 Consensus size: 113
49822408 ACCTTAAGAT
49822418 TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTACATTCACATAATGTAGATTTGGAAA
1 TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTACATTCACATAATGTAGATTTGGAAA
49822483 AATGTTTTGACTGATACTAACAATTAATAATTTGATATAATTTGATAA
66 AATGTTTTGACTGATACTAACAATTAATAATTTGATATAATTTGATAA
49822531 TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTACATTCACATAATGTAGATTTGGAAA
1 TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTACATTCACATAATGTAGATTTGGAAA
49822596 AATGTTTTGACTGATACTAACAATTAATAATTTGATATAATTTGATAA
66 AATGTTTTGACTGATACTAACAATTAATAATTTGATATAATTTGATAA
* *
49822644 TTTTACTAATCATTAATACAATTTATCAATTAATAATTTTACA
1 TTTTACTAACCATTAATACAA-TTATCAGTTAATAATTTTACA
49822687 AATATAATTT
Statistics
Matches: 153, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
113 133 0.87
114 20 0.13
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (113 bp):
TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTACATTCACATAATGTAGATTTGGAAA
AATGTTTTGACTGATACTAACAATTAATAATTTGATATAATTTGATAA
Found at i:49825995 original size:125 final size:125
Alignment explanation
Indices: 49825690--49826135 Score: 734
Period size: 125 Copynumber: 3.6 Consensus size: 125
49825680 CCCAAACATG
* *
49825690 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCAATTTCACAAATTCTTCTCAAATAGCATCATGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
49825755 TAGAAGCAATTTTATACTATTTGCTCAGAAACATCAAGTCGAAATTA-TTTTTCCAGGAC
66 TAGAAGCAATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTTCCAGGAC
*
49825814 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * * *
49825879 TAGAAGTAATTTTATACTATTTACTCAAAAACGTCAAGTCAAAATTATTTTTTCCAGGAC
66 TAGAAGCAATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTTCCAGGAC
* *
49825939 CGACTATAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
49826004 TAGAAGCAATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTCTTT-CAGGAC
66 TAGAAGCAATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTT-TTTCCAGGAC
* * * * *
49826064 CTACTGTAGCAAAAGCGTGTCCACGAGGGCGTGATTTCACAAATTCTTATCAAACAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
49826129 TAGAAGC
66 TAGAAGC
49826136 GAAAGTGCGT
Statistics
Matches: 298, Mismatches: 22, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
124 104 0.35
125 191 0.64
126 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCAATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTTCCAGGAC
Found at i:49827142 original size:24 final size:20
Alignment explanation
Indices: 49827087--49827143 Score: 53
Period size: 24 Copynumber: 2.6 Consensus size: 20
49827077 TAAATTTTAT
49827087 ATATTAAATCTTATTAAAATA
1 ATATTAAAT-TTATTAAAATA
49827108 ATA-TAATATTTATCTATAAGATAA
1 ATATTAA-ATTTAT-TA-AA-AT-A
49827132 ATATTAAATTTA
1 ATATTAAATTTA
49827144 ATATTAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
20 7 0.23
21 7 0.23
22 2 0.07
23 2 0.07
24 9 0.30
25 3 0.10
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (20 bp):
ATATTAAATTTATTAAAATA
Found at i:49827148 original size:12 final size:12
Alignment explanation
Indices: 49827131--49827205 Score: 54
Period size: 12 Copynumber: 6.6 Consensus size: 12
49827121 CTATAAGATA
49827131 AATATTAAATTT
1 AATATTAAATTT
*
49827143 AATATTAAA-AT
1 AATATTAAATTT
*
49827154 -A-ATT-ACTTT
1 AATATTAAATTT
49827163 AATATTAAATTT
1 AATATTAAATTT
*
49827175 AAT-TTAATATTA
1 AATATTAA-ATTT
*
49827187 AACTATTAAA-AT
1 AA-TATTAAATTT
49827199 AATATTA
1 AATATTA
49827206 TTTTTGGAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 15
0.69 0.10 0.21
Matches are distributed among these distances:
8 1 0.02
9 4 0.08
10 2 0.04
11 13 0.27
12 23 0.47
13 2 0.04
14 4 0.08
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (12 bp):
AATATTAAATTT
Found at i:49827163 original size:20 final size:18
Alignment explanation
Indices: 49827138--49827188 Score: 68
Period size: 17 Copynumber: 2.8 Consensus size: 18
49827128 ATAAATATTA
49827138 AATTTAATATTAAAATAATT
1 AATTTAATATTAAAAT--TT
*
49827158 ACTTTAATATT-AAATTT
1 AATTTAATATTAAAATTT
49827175 AATTTAATATTAAA
1 AATTTAATATTAAA
49827189 CTATTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 12 0.43
18 2 0.07
19 4 0.14
20 10 0.36
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTTAATATTAAAATTT
Found at i:49827201 original size:45 final size:47
Alignment explanation
Indices: 49827067--49827203 Score: 131
Period size: 45 Copynumber: 2.9 Consensus size: 47
49827057 TATTAAGATA
49827067 AATATTAAATTAAATTTTATATATTAAATCTTATTAAAATAATATAATATT
1 AATATTAAATTAAA-TTTA-ATATTAAA-C-TATTAAAATAATATAATATT
* * * *
49827118 TATCTATAAGA-TAAATATTAA-ATTTAA-TATTAAAATAAT-TACT-TT
1 AATAT-TAA-ATTAAAT-TTAATATTAAACTATTAAAATAATATAATATT
*
49827163 AATATTAAATTTAATTTAATATTAAACTATTAAAATAATAT
1 AATATTAAATTAAATTTAATATTAAACTATTAAAATAATAT
49827204 TATTTTTGGA
Statistics
Matches: 71, Mismatches: 8, Indels: 19
0.72 0.08 0.19
Matches are distributed among these distances:
43 5 0.07
44 12 0.17
45 17 0.24
46 4 0.06
47 12 0.17
50 5 0.07
51 5 0.07
52 10 0.14
53 1 0.01
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (47 bp):
AATATTAAATTAAATTTAATATTAAACTATTAAAATAATATAATATT
Found at i:49831314 original size:117 final size:117
Alignment explanation
Indices: 49831146--49831365 Score: 316
Period size: 117 Copynumber: 1.9 Consensus size: 117
49831136 TATCAGTAAT
* * * * **
49831146 ACCTTTATGGTGAATTTTGTTTGGCCTTTGTGGCACATTCTATTGGCCCTTGTGGTGTACTTT-T
1 ACCTTTATGGTAAATTATGTTTGGCATTTGTGACACATTCTATTGGCCCTTGTGACGT-CTTTAT
*
49831210 GCTAAGCCTATGTGGTGTATCCTATATGTCGCCTTTGTGGCATATTCTGTTTG
65 GCTAAGCCTATGTGGCGTATCCTATATGTCGCCTTTGTGGCATATTCTGTTTG
* * * *
49831263 ACCTTTATGGTAAATTATGTTTGGCATTTGTGACGCATTCTGTTGGTCCTTGTGACGTTTTTATG
1 ACCTTTATGGTAAATTATGTTTGGCATTTGTGACACATTCTATTGGCCCTTGTGACGTCTTTATG
*
49831328 CTAAGCCTATGTGGCGTATCCTATATGTGGCCTTTGTG
66 CTAAGCCTATGTGGCGTATCCTATATGTCGCCTTTGTG
49831366 ACGCATTATA
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
116 3 0.03
117 87 0.97
ACGTcount: A:0.15, C:0.17, G:0.24, T:0.44
Consensus pattern (117 bp):
ACCTTTATGGTAAATTATGTTTGGCATTTGTGACACATTCTATTGGCCCTTGTGACGTCTTTATG
CTAAGCCTATGTGGCGTATCCTATATGTCGCCTTTGTGGCATATTCTGTTTG
Found at i:49831410 original size:71 final size:71
Alignment explanation
Indices: 49831284--49831426 Score: 187
Period size: 71 Copynumber: 2.0 Consensus size: 71
49831274 AAATTATGTT
* * ** * *
49831284 TGGCATTTGTGACGCATTCTGTTGGTCCTTGTGACGTTTTTATGCTAAGCCTATGTGGCGTATCC
1 TGGCATTTGTGACGCATTATATTGGTCCTTGTGACGTACTTATACTAAGCCTATGTGGCGTATCA
49831349 TATATG
66 TATATG
* * * * *
49831355 TGGCCTTTGTGACGCATTATATTGGTTCTTGTGGCGTACTTCTACTAAGCTTATGTGGCGTATCA
1 TGGCATTTGTGACGCATTATATTGGTCCTTGTGACGTACTTATACTAAGCCTATGTGGCGTATCA
49831420 TATATG
66 TATATG
49831426 T
1 T
49831427 CACATTTATG
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.17, C:0.17, G:0.24, T:0.41
Consensus pattern (71 bp):
TGGCATTTGTGACGCATTATATTGGTCCTTGTGACGTACTTATACTAAGCCTATGTGGCGTATCA
TATATG
Found at i:49832369 original size:161 final size:161
Alignment explanation
Indices: 49832104--49832425 Score: 572
Period size: 161 Copynumber: 2.0 Consensus size: 161
49832094 AATTCACTAA
*
49832104 GCTCATGTAACTTATAAATGTTTTGTTTATGTTTCAGGTTATGCTGTATGAATGAGACCACCTGG
1 GCTCATGTAACTTATAAATGTTTTGTTTATGTTTCAGGTTATGCTGTATGAATGAGACCACCTAG
* * ** *
49832169 AGAGACAAGTCATTTGTACACCATAGAAACGGTGATCTGGGATATTATGCATACAGTGGACATCT
66 AGAGACAAGTCAGTAGTACACCATAGAAACGACGATCTGGAATATTATGCATACAGTGGACATCT
49832234 TTAGATTTTGGCATATTGTAGGATTATGTCC
131 TTAGATTTTGGCATATTGTAGGATTATGTCC
* *
49832265 GCTCATGTAACTTATAAATGTTTTGTTTATGTTTTAGGTTATGCTGTATGAATGAGACCGCCTAG
1 GCTCATGTAACTTATAAATGTTTTGTTTATGTTTCAGGTTATGCTGTATGAATGAGACCACCTAG
49832330 AGAGACAAGTCAGTAGTACACCATAGAAACGACGATCTGGAATATTATGCATACAGTGGACATCT
66 AGAGACAAGTCAGTAGTACACCATAGAAACGACGATCTGGAATATTATGCATACAGTGGACATCT
49832395 TTAGATTTTGGCATATTGTAGGATTATGTCC
131 TTAGATTTTGGCATATTGTAGGATTATGTCC
49832426 TGAGAGTCTG
Statistics
Matches: 153, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
161 153 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (161 bp):
GCTCATGTAACTTATAAATGTTTTGTTTATGTTTCAGGTTATGCTGTATGAATGAGACCACCTAG
AGAGACAAGTCAGTAGTACACCATAGAAACGACGATCTGGAATATTATGCATACAGTGGACATCT
TTAGATTTTGGCATATTGTAGGATTATGTCC
Found at i:49833048 original size:225 final size:225
Alignment explanation
Indices: 49832656--49833104 Score: 853
Period size: 225 Copynumber: 2.0 Consensus size: 225
49832646 TCGAGTTGAC
*
49832656 GGTGTTACAACTCTCGCTTTTCCCTTCCTTCTTGATAACCTGATGTCGTCTTTATCTATAATTGA
1 GGTGTTACAACTCTCGCTTTTCCCTTCCTTCTTGATAACCCGATGTCGTCTTTATCTATAATTGA
*
49832721 TAATTAACAATGGAACAATATCAGAATTCATCCAATTCACATTCAAATATAAAGTCAAACATATT
66 TAATTAACAATGGAACAATATCAAAATTCATCCAATTCACATTCAAATATAAAGTCAAACATATT
* * *
49832786 TTTCATTTTATTCAATTTAGTTCCTAAACTTGAGATAAACATATCTTTCAATATTTAGCATCTGA
131 TTGCATTTTATTCAATTTAGTTCCTAAACTCGAGATAAACATATCTTTCAATATTTAGCATCGGA
49832851 TCAAAATACGATTTCACATTAACTCATTAA
196 TCAAAATACGATTTCACATTAACTCATTAA
49832881 GGTGTTACAACTCTCGCTTTTCCCTTCCTTCTTGATAACCCGATGTCGTCTTTATCTATAATTGA
1 GGTGTTACAACTCTCGCTTTTCCCTTCCTTCTTGATAACCCGATGTCGTCTTTATCTATAATTGA
49832946 TAATTAACAATGGAACAATATCAAAATTCATCCAATTCACATTCAAATATAAAGTCAAACATATT
66 TAATTAACAATGGAACAATATCAAAATTCATCCAATTCACATTCAAATATAAAGTCAAACATATT
49833011 TTGCATTTTATTCAATTTAGTTCCTAAACTCGAGATAAACATATCTTTCAATATTTAGCATCGGA
131 TTGCATTTTATTCAATTTAGTTCCTAAACTCGAGATAAACATATCTTTCAATATTTAGCATCGGA
49833076 TCAAAATACGATTTCACATTAACTCATTA
196 TCAAAATACGATTTCACATTAACTCATTA
49833105 GGGACTCTAT
Statistics
Matches: 219, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
225 219 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (225 bp):
GGTGTTACAACTCTCGCTTTTCCCTTCCTTCTTGATAACCCGATGTCGTCTTTATCTATAATTGA
TAATTAACAATGGAACAATATCAAAATTCATCCAATTCACATTCAAATATAAAGTCAAACATATT
TTGCATTTTATTCAATTTAGTTCCTAAACTCGAGATAAACATATCTTTCAATATTTAGCATCGGA
TCAAAATACGATTTCACATTAACTCATTAA
Found at i:49835756 original size:26 final size:26
Alignment explanation
Indices: 49835726--49835785 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
49835716 TTCTTCGAAA
*
49835726 CTTCCCT-ATTAAAGGCTCTTTGTGAG
1 CTTCCCTGATTAAAGGCTCTCT-TGAG
*
49835752 CTT-CCTGATTAATGGCTCTCTTGAG
1 CTTCCCTGATTAAAGGCTCTCTTGAG
49835777 CTT-CCTGAT
1 CTTCCCTGAT
49835786 ATGGCTCGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 16 0.52
26 15 0.48
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.40
Consensus pattern (26 bp):
CTTCCCTGATTAAAGGCTCTCTTGAG
Found at i:49835782 original size:25 final size:25
Alignment explanation
Indices: 49835733--49835843 Score: 95
Period size: 25 Copynumber: 4.5 Consensus size: 25
49835723 AAACTTCCCT
* *
49835733 ATTAAAGGCTCTTTGTGAGCTTCCTG
1 ATTAATGGCTCTCT-TGAGCTTCCTG
49835759 ATTAATGGCTCTCTTGAGCTTCCTG
1 ATTAATGGCTCTCTTGAGCTTCCTG
* *
49835784 A-T-ATGGCTCGCTTGAACTT-CTCG
1 ATTAATGGCTCTCTTGAGCTTCCT-G
* ** *
49835807 A-TATATGGCTATCCGGAGCTTCCCG
1 ATTA-ATGGCTCTCTTGAGCTTCCTG
49835832 ATTAATGGCTCT
1 ATTAATGGCTCT
49835844 TCAAAGCTTC
Statistics
Matches: 69, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.03
23 18 0.26
24 1 0.01
25 33 0.48
26 15 0.22
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (25 bp):
ATTAATGGCTCTCTTGAGCTTCCTG
Found at i:49836401 original size:14 final size:14
Alignment explanation
Indices: 49836382--49836409 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
49836372 CATTAAATGC
49836382 TTACTTTGTTTTAT
1 TTACTTTGTTTTAT
49836396 TTACTTTGTTTTAT
1 TTACTTTGTTTTAT
49836410 AGTAACCTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (14 bp):
TTACTTTGTTTTAT
Found at i:49841317 original size:16 final size:16
Alignment explanation
Indices: 49841289--49841321 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
49841279 AGAAAATCCC
49841289 TTTTTTTTCATTTTCA
1 TTTTTTTTCATTTTCA
49841305 TTTTCTTTT-ATTTTCA
1 TTTT-TTTTCATTTTCA
49841321 T
1 T
49841322 CATTTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTTTCATTTTCA
Found at i:49841327 original size:24 final size:21
Alignment explanation
Indices: 49841288--49841332 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 21
49841278 TAGAAAATCC
49841288 CTTTTTTTTCATTTTCATTTT
1 CTTTTTTTTCATTTTCATTTT
49841309 CTTTTATTTTCATCATTTCATTTT
1 CTTTT-TTTTCAT--TTTCATTTT
49841333 TTTCCTATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 7 0.33
24 9 0.43
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (21 bp):
CTTTTTTTTCATTTTCATTTT
Found at i:49845604 original size:38 final size:38
Alignment explanation
Indices: 49845537--49845614 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 38
49845527 TATCCTTTAT
49845537 TAAAAAAAAGCAAATGATAATCCTTAGTAACGTCTTCCA
1 TAAAAAAAAGCAAATGATAAT-CTTAGTAACGTCTTCCA
* * *
49845576 TAAAAAAAATCGAATGATAAT-TTAAGTAATGTCTTCCA
1 TAAAAAAAAGCAAATGATAATCTT-AGTAACGTCTTCCA
49845614 T
1 T
49845615 GAATTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
37 2 0.06
38 14 0.40
39 19 0.54
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.29
Consensus pattern (38 bp):
TAAAAAAAAGCAAATGATAATCTTAGTAACGTCTTCCA
Found at i:49847261 original size:19 final size:19
Alignment explanation
Indices: 49847239--49847364 Score: 59
Period size: 19 Copynumber: 6.8 Consensus size: 19
49847229 TTTTATGATT
49847239 TTTTATGATTTTTATAAAA
1 TTTTATGATTTTTATAAAA
* * *
49847258 TTTTA-CA--ATTAT-ATA
1 TTTTATGATTTTTATAAAA
* *
49847273 TTTTACGATTTTTATAAAT
1 TTTTATGATTTTTATAAAA
* * * *
49847292 TTTTTTCTATTTTAATAAAT
1 TTTTAT-GATTTTTATAAAA
**
49847312 TTTTAAAATTTTTATTAAAA
1 TTTTATGATTTTTA-TAAAA
* *
49847332 -GTTATAATTTTTAT--AA
1 TTTTATGATTTTTATAAAA
49847348 TTTTATTGATTTTTATA
1 TTTTA-TGATTTTTATA
49847365 TTTTTTTAAT
Statistics
Matches: 78, Mismatches: 20, Indels: 18
0.67 0.17 0.16
Matches are distributed among these distances:
15 7 0.09
16 7 0.09
17 3 0.04
18 15 0.19
19 27 0.35
20 19 0.24
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTTATGATTTTTATAAAA
Found at i:49847353 original size:8 final size:9
Alignment explanation
Indices: 49847280--49847374 Score: 50
Period size: 10 Copynumber: 10.2 Consensus size: 9
49847270 ATATTTTACG
49847280 ATTTTTATAA
1 ATTTTTAT-A
* *
49847290 ATTTTTTTCT
1 ATTTTTAT-A
*
49847300 ATTTTAATAA
1 ATTTTTAT-A
*
49847310 ATTTTTAAA
1 ATTTTTATA
49847319 ATTTTTATTA
1 ATTTTTA-TA
***
49847329 AAAGTTATA
1 ATTTTTATA
49847338 ATTTTTATA
1 ATTTTTATA
*
49847347 A-TTTTATTG
1 ATTTTTA-TA
49847356 ATTTTTAT-
1 ATTTTTATA
*
49847364 ATTTTTTTA
1 ATTTTTATA
49847373 AT
1 AT
49847375 AAATTTTTGT
Statistics
Matches: 63, Mismatches: 18, Indels: 9
0.70 0.20 0.10
Matches are distributed among these distances:
8 12 0.19
9 22 0.35
10 29 0.46
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (9 bp):
ATTTTTATA
Found at i:49852018 original size:17 final size:17
Alignment explanation
Indices: 49851996--49852031 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
49851986 AATCTAGATA
49851996 TTTTATACCTTGGCATG
1 TTTTATACCTTGGCATG
49852013 TTTTATACCTTGGCATG
1 TTTTATACCTTGGCATG
49852030 TT
1 TT
49852032 AAGGACATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (17 bp):
TTTTATACCTTGGCATG
Found at i:49856099 original size:21 final size:23
Alignment explanation
Indices: 49856057--49856099 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
49856047 TAATTAATCA
*
49856057 TAAACAGAAGCAAATCTCTTTTC
1 TAAACAGAAGCAAATATCTTTTC
*
49856080 TAAA-AGAAG-AAATATGTTTT
1 TAAACAGAAGCAAATATCTTTT
49856100 AAAAAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (23 bp):
TAAACAGAAGCAAATATCTTTTC
Found at i:49856159 original size:20 final size:23
Alignment explanation
Indices: 49856129--49856173 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
49856119 TTAAGAAAAA
49856129 AAATACAAAAAAG-AATAG-ATC
1 AAATACAAAAAAGAAATAGAATC
49856150 AAAT-CAAAAAAGAAATAGAATC
1 AAATACAAAAAAGAAATAGAATC
49856172 AA
1 AA
49856174 CAATTTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.36
21 9 0.41
22 5 0.23
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.13
Consensus pattern (23 bp):
AAATACAAAAAAGAAATAGAATC
Found at i:49862192 original size:6 final size:6
Alignment explanation
Indices: 49862128--49862194 Score: 55
Period size: 6 Copynumber: 10.5 Consensus size: 6
49862118 TTGAAAAAAA
* *
49862128 TTTATT TTCCTATT ATTATT ATTATT ATTTATT TTTACTAT TTTA-T TTTATT
1 TTTATT TT--TATT TTTATT TTTATT -TTTATT TTTA-T-T TTTATT TTTATT
*
49862180 TTCATT TTTATT TTT
1 TTTATT TTTATT TTT
49862195 GCAGGAAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
5 5 0.10
6 30 0.59
7 6 0.12
8 10 0.20
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (6 bp):
TTTATT
Found at i:49865174 original size:110 final size:110
Alignment explanation
Indices: 49865039--49865258 Score: 422
Period size: 110 Copynumber: 2.0 Consensus size: 110
49865029 TCAAAAATGC
*
49865039 CCCCCAAACTTCGAGACAAAGGAAAAGGAAAAATAGAAGAATCATCCAAAACCCAAATCACCTCA
1 CCCCCAAACTCCGAGACAAAGGAAAAGGAAAAATAGAAGAATCATCCAAAACCCAAATCACCTCA
49865104 AAACCAATTAAGTCATGAAATGAAATTTGCCATGAAGAAGATGAG
66 AAACCAATTAAGTCATGAAATGAAATTTGCCATGAAGAAGATGAG
*
49865149 CCCCCAAACTCCGAGACAAAGGAAAAGGGAAAATAGAAGAATCATCCAAAACCCAAATCACCTCA
1 CCCCCAAACTCCGAGACAAAGGAAAAGGAAAAATAGAAGAATCATCCAAAACCCAAATCACCTCA
49865214 AAACCAATTAAGTCATGAAATGAAATTTGCCATGAAGAAGATGAG
66 AAACCAATTAAGTCATGAAATGAAATTTGCCATGAAGAAGATGAG
49865259 AAATCATCAT
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 108 1.00
ACGTcount: A:0.48, C:0.21, G:0.16, T:0.15
Consensus pattern (110 bp):
CCCCCAAACTCCGAGACAAAGGAAAAGGAAAAATAGAAGAATCATCCAAAACCCAAATCACCTCA
AAACCAATTAAGTCATGAAATGAAATTTGCCATGAAGAAGATGAG
Found at i:49866627 original size:34 final size:34
Alignment explanation
Indices: 49866589--49866752 Score: 213
Period size: 34 Copynumber: 4.8 Consensus size: 34
49866579 AAAATATGTG
*
49866589 TGAACAGGAAAGATTCCCTGCAAGGAATGATGCA
1 TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
* *
49866623 TGAACAGGAAAGATTCCCTCCAAGAAAAGATG-A
1 TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
*
49866656 GGTGAACAGGAAAGATTCCCTGCAAGAAATGATGCG
1 --TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
* *
49866692 TGAATAGGAAAGATTCCCTGCAAAAAATGATGCA
1 TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
* * * *
49866726 TGAACATGAAATATTACTTGCAAGAAA
1 TGAACAGGAAAGATTCCCTGCAAGAAA
49866753 AGACAAGAAA
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
33 1 0.01
34 81 0.72
35 30 0.27
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (34 bp):
TGAACAGGAAAGATTCCCTGCAAGAAATGATGCA
Found at i:49866687 original size:69 final size:68
Alignment explanation
Indices: 49866575--49866752 Score: 223
Period size: 69 Copynumber: 2.6 Consensus size: 68
49866565 AGAAATGATG
* * *
49866575 CAAGAAAATATGTGTGAACAGGAAAGATTCCCTGCAAGGAATGATGCATGAACAGGAAAGATTCC
1 CAAGAAAAGATGGGTGAACAGGAAAGATTCCCTGCAAGAAATGATGCATGAACAGGAAAGATTCC
49866640 CTC
66 CTC
* *
49866643 CAAGAAAAGATGAGGTGAACAGGAAAGATTCCCTGCAAGAAATGATGCGTGAATAGGAAAGATTC
1 CAAGAAAAGATG-GGTGAACAGGAAAGATTCCCTGCAAGAAATGATGCATGAACAGGAAAGATTC
*
49866708 CCTG
65 CCTC
** * * * *
49866712 CAA-AAAATGATGCATGAACATGAAATATTACTTGCAAGAAA
1 CAAGAAAA-GATGGGTGAACAGGAAAGATTCCCTGCAAGAAA
49866753 AGACAAGAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
68 38 0.40
69 58 0.60
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (68 bp):
CAAGAAAAGATGGGTGAACAGGAAAGATTCCCTGCAAGAAATGATGCATGAACAGGAAAGATTCC
CTC
Found at i:49867032 original size:14 final size:13
Alignment explanation
Indices: 49867005--49867042 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
49866995 GTTTTCCAAA
49867005 TTTTCAAATTAAG
1 TTTTCAAATTAAG
49867018 TTTTCAAACTTAAG
1 TTTTCAAA-TTAAG
49867032 TTTTCAAATTA
1 TTTTCAAATTA
49867043 CAAATATCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (13 bp):
TTTTCAAATTAAG
Found at i:49867155 original size:14 final size:14
Alignment explanation
Indices: 49867136--49867162 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49867126 TAAATATTTA
49867136 TTAAGTTTTCAAAC
1 TTAAGTTTTCAAAC
49867150 TTAAGTTTTCAAA
1 TTAAGTTTTCAAA
49867163 TTACAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (14 bp):
TTAAGTTTTCAAAC
Found at i:49867443 original size:16 final size:16
Alignment explanation
Indices: 49867422--49867453 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
49867412 TAAAAAATAT
*
49867422 ATATTATAATATTCTA
1 ATATTACAATATTCTA
49867438 ATATTACAATATTCTA
1 ATATTACAATATTCTA
49867454 TCTTAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATTACAATATTCTA
Found at i:49867569 original size:16 final size:16
Alignment explanation
Indices: 49867545--49867580 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
49867535 AAGGTTAAAC
*
49867545 GAAATAAAAACAAAAA
1 GAAACAAAAACAAAAA
*
49867561 GAAACAAAAAGAAAAA
1 GAAACAAAAACAAAAA
49867577 GAAA
1 GAAA
49867581 AAGAGAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.81, C:0.06, G:0.11, T:0.03
Consensus pattern (16 bp):
GAAACAAAAACAAAAA
Found at i:49867785 original size:16 final size:16
Alignment explanation
Indices: 49867761--49867796 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
49867751 AAGGTTAAAC
*
49867761 GAAATAAAAACAAAAA
1 GAAACAAAAACAAAAA
*
49867777 GAAACAAAAAGAAAAA
1 GAAACAAAAACAAAAA
49867793 GAAA
1 GAAA
49867797 AAGAGAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.81, C:0.06, G:0.11, T:0.03
Consensus pattern (16 bp):
GAAACAAAAACAAAAA
Found at i:49867870 original size:216 final size:216
Alignment explanation
Indices: 49867496--49867927 Score: 864
Period size: 216 Copynumber: 2.0 Consensus size: 216
49867486 TATTATAATA
49867496 AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAAAAACAAAAA
1 AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAAAAACAAAAA
49867561 GAAACAAAAAGAAAAAGAAAAAGAGAAAGAAGGAAGCCACGGCCAAGGGTTTCAAAGTTTCTAAG
66 GAAACAAAAAGAAAAAGAAAAAGAGAAAGAAGGAAGCCACGGCCAAGGGTTTCAAAGTTTCTAAG
49867626 TTCAATTGGTTAGTTAATTTAGTCCATTTTTTCTTGTAATTTTTATGTTTTTGGAATCCCGGTGT
131 TTCAATTGGTTAGTTAATTTAGTCCATTTTTTCTTGTAATTTTTATGTTTTTGGAATCCCGGTGT
49867691 TAAATACTACCCGACCTATGC
196 TAAATACTACCCGACCTATGC
49867712 AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAAAAACAAAAA
1 AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAAAAACAAAAA
49867777 GAAACAAAAAGAAAAAGAAAAAGAGAAAGAAGGAAGCCACGGCCAAGGGTTTCAAAGTTTCTAAG
66 GAAACAAAAAGAAAAAGAAAAAGAGAAAGAAGGAAGCCACGGCCAAGGGTTTCAAAGTTTCTAAG
49867842 TTCAATTGGTTAGTTAATTTAGTCCATTTTTTCTTGTAATTTTTATGTTTTTGGAATCCCGGTGT
131 TTCAATTGGTTAGTTAATTTAGTCCATTTTTTCTTGTAATTTTTATGTTTTTGGAATCCCGGTGT
49867907 TAAATACTACCCGACCTATGC
196 TAAATACTACCCGACCTATGC
49867928 CGAAATTTTA
Statistics
Matches: 216, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
216 216 1.00
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.25
Consensus pattern (216 bp):
AGTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAAAAACAAAAA
GAAACAAAAAGAAAAAGAAAAAGAGAAAGAAGGAAGCCACGGCCAAGGGTTTCAAAGTTTCTAAG
TTCAATTGGTTAGTTAATTTAGTCCATTTTTTCTTGTAATTTTTATGTTTTTGGAATCCCGGTGT
TAAATACTACCCGACCTATGC
Found at i:49871232 original size:3 final size:3
Alignment explanation
Indices: 49871224--49871258 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
49871214 AAAGTGTGAA
49871224 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
49871259 ATAACAAAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:49878015 original size:34 final size:35
Alignment explanation
Indices: 49877964--49878042 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
49877954 AATTAATAAC
*
49877964 ATTTAAATAATTTATTTTATTAA-TAAT-AAAAGTT
1 ATTTAAA-AATTAATTTTATTAAGTAATAAAAAGTT
* *
49877998 ATTTATAAAATTAATTTTATTAAGTAGTAAAAATTT
1 ATTTA-AAAATTAATTTTATTAAGTAATAAAAAGTT
49878034 ATTTAAAAA
1 ATTTAAAAA
49878043 GATGATTATT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
34 19 0.49
35 9 0.23
36 11 0.28
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (35 bp):
ATTTAAAAATTAATTTTATTAAGTAATAAAAAGTT
Found at i:49879145 original size:11 final size:10
Alignment explanation
Indices: 49879107--49879141 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
49879097 ATAAAGTAAA
49879107 ATAAAAGAA-
1 ATAAAAGAAC
*
49879116 ACAAAAGAAC
1 ATAAAAGAAC
49879126 ATAAAAGAAC
1 ATAAAAGAAC
49879136 ATAAAA
1 ATAAAA
49879142 AGAAACAGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.74, C:0.09, G:0.09, T:0.09
Consensus pattern (10 bp):
ATAAAAGAAC
Found at i:49880099 original size:39 final size:39
Alignment explanation
Indices: 49880019--49880188 Score: 191
Period size: 39 Copynumber: 4.2 Consensus size: 39
49880009 ATTTGACGGC
* * *
49880019 TTACTGA-TCAGGCAC-TTATGTGCCGACTACTGTTACTG
1 TTACTGATTC-GGCACTTTGTGTGTCGAATACTGTTACTG
49880057 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
* *
49880096 TTACTGACTCGGCACTTTGTGTGTCGAATACTGTTACCG
1 TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
* * *
49880135 TTACTGTTACAGGTTCAGCACTTTGTGTGTTGAATACTATTACTG
1 TTACTG----A--TTCGGCACTTTGTGTGTCGAATACTGTTACTG
49880180 TTACTGATT
1 TTACTGATT
49880189 ACTGTATACT
Statistics
Matches: 114, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
38 12 0.11
39 67 0.59
41 1 0.01
43 1 0.01
45 33 0.29
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.39
Consensus pattern (39 bp):
TTACTGATTCGGCACTTTGTGTGTCGAATACTGTTACTG
Found at i:49880138 original size:45 final size:43
Alignment explanation
Indices: 49880050--49880192 Score: 168
Period size: 45 Copynumber: 3.3 Consensus size: 43
49880040 GCCGACTACT
49880050 GTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATAC--T--
1 GTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTTTAC
*
49880089 GTTACTGTTACTGACTCGGCACTTTGTGTGTCGAATACTGTTACC
1 GTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACT-TTA-C
* * * *
49880134 GTTACTGTTACAGGTTCAGCACTTTGTGTGTTGAATACTATTAC
1 GTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACT-TTAC
49880178 TGTTACTGATTACTG
1 -GTTACTG-TTACTG
49880193 TATACTGGTG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
39 37 0.42
42 1 0.01
44 1 0.01
45 44 0.50
46 5 0.06
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.41
Consensus pattern (43 bp):
GTTACTGTTACTGATTCGGCACTTTGTGTGTCGAATACTTTAC
Found at i:49880191 original size:13 final size:14
Alignment explanation
Indices: 49880168--49880199 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
49880158 TGTGTGTTGA
49880168 ATACT-ATTACTGT
1 ATACTGATTACTGT
49880181 -TACTGATTACTGT
1 ATACTGATTACTGT
49880194 ATACTG
1 ATACTG
49880200 GTGTGTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.24
13 8 0.47
14 5 0.29
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (14 bp):
ATACTGATTACTGT
Found at i:49880804 original size:9 final size:9
Alignment explanation
Indices: 49880790--49880818 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
49880780 GAATGTGAAA
49880790 TGAATTGGT
1 TGAATTGGT
49880799 TGAATTGGT
1 TGAATTGGT
49880808 TGAATTGGT
1 TGAATTGGT
49880817 TG
1 TG
49880819 TGATTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (9 bp):
TGAATTGGT
Found at i:49881870 original size:5 final size:5
Alignment explanation
Indices: 49881860--49881902 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
49881850 ATACTCTTCA
** *
49881860 CTTTT CTTTT CTTTT CAATT CCTTT CTTTT CTTTT CATTTT CT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT C-TTTT CT
49881903 CTCGAGTTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (5 bp):
CTTTT
Found at i:49883069 original size:19 final size:19
Alignment explanation
Indices: 49883041--49883086 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
49883031 ATTGGACATT
*
49883041 TTTTAA-AATTTTCTAA-TA
1 TTTTAATAA-TTTCTAACAA
49883059 TTTTAATAATTTCTAACAA
1 TTTTAATAATTTCTAACAA
49883078 TTTTAATAA
1 TTTTAATAA
49883087 AAAAATTACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (19 bp):
TTTTAATAATTTCTAACAA
Found at i:49888488 original size:15 final size:15
Alignment explanation
Indices: 49888471--49888499 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49888461 GACATGTATT
49888471 TTTTTTAATA-TTTA
1 TTTTTTAATACTTTA
49888485 TTTTTTAATACTTTA
1 TTTTTTAATACTTTA
49888500 CTGTACCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAATACTTTA
Found at i:49889137 original size:16 final size:17
Alignment explanation
Indices: 49889105--49889137 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
49889095 AAAATCTTAT
49889105 TTATAAATATGATAAAAC
1 TTATAAATA-GATAAAAC
49889123 TTATAAATA-ATAAAA
1 TTATAAATAGATAAAA
49889138 AAAATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (17 bp):
TTATAAATAGATAAAAC
Found at i:49893982 original size:19 final size:19
Alignment explanation
Indices: 49893958--49893994 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
49893948 ACTGTAAAAA
49893958 TCCTCAAATCATAGATTGT
1 TCCTCAAATCATAGATTGT
49893977 TCCTCAAATCATAGATTG
1 TCCTCAAATCATAGATTG
49893995 GTTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (19 bp):
TCCTCAAATCATAGATTGT
Found at i:49897630 original size:79 final size:79
Alignment explanation
Indices: 49897487--49897712 Score: 281
Period size: 79 Copynumber: 2.9 Consensus size: 79
49897477 CCTCTGCGCT
* *
49897487 ATTCTGTTGATGAAGAATATGCGATATTTGAAAATGTTGGATTGATTGTTACTGATTTTGATTTA
1 ATTCTGTTGATGAAGAATATGCGATATCTGAAAATGTTGGATTGATTGTTACTGATTCTGATTTA
*
49897552 TAGCCCTTTACATG
66 TAACCCTTTACATG
* * * *
49897566 ATTCTGTTGATAAAGAATATGCGATAACTGAAAATGTTGGATTGATTGTTACCGATTCTAATTTA
1 ATTCTGTTGATGAAGAATATGCGATATCTGAAAATGTTGGATTGATTGTTACTGATTCTGATTTA
* ** *
49897631 TAACCGTTTATGTT
66 TAACCCTTTACATG
* * * * * ** *
49897645 ACTCTATTGATGAAGAATATACGATATCTGCATATGTTAAATTGCTTGTTACTGATTCTGATTTA
1 ATTCTGTTGATGAAGAATATGCGATATCTGAAAATGTTGGATTGATTGTTACTGATTCTGATTTA
49897710 TAA
66 TAA
49897713 TCGTGCATGT
Statistics
Matches: 124, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
79 124 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.42
Consensus pattern (79 bp):
ATTCTGTTGATGAAGAATATGCGATATCTGAAAATGTTGGATTGATTGTTACTGATTCTGATTTA
TAACCCTTTACATG
Found at i:49900197 original size:6 final size:6
Alignment explanation
Indices: 49900180--49900239 Score: 70
Period size: 6 Copynumber: 9.8 Consensus size: 6
49900170 TCCACTTGTT
*
49900180 TTTTTAA TTTCTA TTTCTTA -T-TTA TTTCTTA TTTTTA TTTTTA TTTTTA
1 TTTTT-A TTTTTA TTT-TTA TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA
49900229 TTTTTA TTTTT
1 TTTTTA TTTTT
49900240 TTATTCACAA
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
4 3 0.06
5 1 0.02
6 31 0.66
7 12 0.26
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:49912302 original size:25 final size:25
Alignment explanation
Indices: 49912246--49912296 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
49912236 TATATATCGA
49912246 ACAATAATATTGAAATTTCGTATTT
1 ACAATAATATTGAAATTTCGTATTT
49912271 ACAATAATATTGAAATTTCGTATTT
1 ACAATAATATTGAAATTTCGTATTT
49912296 A
1 A
49912297 GTATAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (25 bp):
ACAATAATATTGAAATTTCGTATTT
Found at i:49913616 original size:22 final size:24
Alignment explanation
Indices: 49913590--49913633 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
49913580 AAGGAATTTC
49913590 TTTATGTTCTC-TCT-TTCTCTAT
1 TTTATGTTCTCTTCTCTTCTCTAT
*
49913612 TTTATTTTCTCTTCTCTTCTCT
1 TTTATGTTCTCTTCTCTTCTCT
49913634 CTATAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 3 0.16
24 6 0.32
ACGTcount: A:0.07, C:0.25, G:0.02, T:0.66
Consensus pattern (24 bp):
TTTATGTTCTCTTCTCTTCTCTAT
Found at i:49920707 original size:22 final size:22
Alignment explanation
Indices: 49920672--49920734 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
49920662 AACCACTACT
*
49920672 TATATGTTAATACATGCGAACC
1 TATATGTTATTACATGCGAACC
* ** *
49920694 TATATGTTGTTACATATGAACT
1 TATATGTTATTACATGCGAACC
49920716 TATA-GTTTATTACATGCGA
1 TATATG-TTATTACATGCGA
49920735 TGTCATATGA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
21 1 0.03
22 31 0.97
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (22 bp):
TATATGTTATTACATGCGAACC
Found at i:49927259 original size:21 final size:21
Alignment explanation
Indices: 49927212--49927263 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
49927202 ACTAACTTTC
*
49927212 GATTAATTAAGTTTAGTATTA
1 GATTAATTAAGTTTAATATTA
49927233 GATTAATTAAGATTTAAT-TTA
1 GATTAATTAAG-TTTAATATTA
49927254 -ATTTAATTAA
1 GA-TTAATTAA
49927264 TTAAGTTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 22 0.79
22 5 0.18
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (21 bp):
GATTAATTAAGTTTAATATTA
Found at i:49929747 original size:9 final size:8
Alignment explanation
Indices: 49929725--49929749 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
49929715 TAAGTTGTAT
49929725 TTAAAAAA
1 TTAAAAAA
49929733 TTAAAAAA
1 TTAAAAAA
49929741 TTAAAAAA
1 TTAAAAAA
49929749 T
1 T
49929750 AAATACAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
TTAAAAAA
Found at i:49938263 original size:22 final size:22
Alignment explanation
Indices: 49938225--49938266 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
49938215 ATTTAATTGT
*
49938225 TTAAAATATACTGTTAAAAATA
1 TTAAAATAAACTGTTAAAAATA
49938247 TTAAAATAAATCT-TTAAAAA
1 TTAAAATAAA-CTGTTAAAAA
49938267 ATCTAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (22 bp):
TTAAAATAAACTGTTAAAAATA
Found at i:49948847 original size:5 final size:5
Alignment explanation
Indices: 49948837--49948873 Score: 56
Period size: 5 Copynumber: 7.0 Consensus size: 5
49948827 TCATCTCCTA
49948837 TTTCT TTTCT TTCTCT TTTCTT TTTCT TTTCT TTTCT
1 TTTCT TTTCT TT-TCT TTTC-T TTTCT TTTCT TTTCT
49948874 CTCATTCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 20 0.67
6 10 0.33
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTCT
Done.