Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 158 of 313
Found at i:49948853 original size:11 final size:11
Alignment explanation
Indices: 49948839--49948875 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
49948829 ATCTCCTATT
49948839 TCTTTTCTTTC
1 TCTTTTCTTTC
*
49948850 TCTTTTCTTTT
1 TCTTTTCTTTC
49948861 TCTTTTCTTTTC
1 TCTTTTC-TTTC
49948873 TCT
1 TCT
49948876 CATTCTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (11 bp):
TCTTTTCTTTC
Found at i:49948858 original size:16 final size:15
Alignment explanation
Indices: 49948837--49948873 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 15
49948827 TCATCTCCTA
49948837 TTTCTTTTCTTTCTCT
1 TTTCTTTTCTTT-TCT
49948853 TTTCTTTTTCTTTTCT
1 TTTC-TTTTCTTTTCT
49948869 TTTCT
1 TTTCT
49948874 CTCATTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.05
16 11 0.55
17 8 0.40
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCTTTTCTTTTCT
Found at i:49949731 original size:34 final size:34
Alignment explanation
Indices: 49949692--49949769 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
49949682 CGAATACATG
**
49949692 ATAAGCATGACTT-TTGCTACTGTATTGATCTGTT
1 ATAAGCATG-CTTATTGCTACCATATTGATCTGTT
*
49949726 ATAAGCATGTTTATTGCTACCATATTGATCTGTT
1 ATAAGCATGCTTATTGCTACCATATTGATCTGTT
49949760 ATAAGCATGC
1 ATAAGCATGC
49949770 CATATTGCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 2 0.05
34 37 0.95
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (34 bp):
ATAAGCATGCTTATTGCTACCATATTGATCTGTT
Found at i:49950170 original size:21 final size:21
Alignment explanation
Indices: 49950146--49950199 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
49950136 CCGATGAGTG
49950146 GTTCATCCACAATGATAAGTA
1 GTTCATCCACAATGATAAGTA
* *
49950167 GTTCATCCACAATGATGAGTG
1 GTTCATCCACAATGATAAGTA
*
49950188 GTTTATCCACAA
1 GTTCATCCACAA
49950200 CATGGTGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (21 bp):
GTTCATCCACAATGATAAGTA
Found at i:49956983 original size:76 final size:76
Alignment explanation
Indices: 49956857--49957010 Score: 263
Period size: 76 Copynumber: 2.0 Consensus size: 76
49956847 CTAGAAAAAT
* *
49956857 GTGGTTGGTAAGGTAAGATTAGCAATGGGTTTACTAATATCATCTGCAAATCTACACTAAAGCCA
1 GTGGTTGGTAAGGTAAGATTAGCAATGGGTTTACTAATATCATCTACAAATCTAAACTAAAGCCA
*
49956922 GCCCCAAGGTC
66 ACCCCAAGGTC
*
49956933 GTGGTTGGTAAGGTAAGATTAGCAATGGGTTTACTAATATCATCTACAAATCTAAAGTAAAGCCA
1 GTGGTTGGTAAGGTAAGATTAGCAATGGGTTTACTAATATCATCTACAAATCTAAACTAAAGCCA
*
49956998 ACCCTAAGGTC
66 ACCCCAAGGTC
49957009 GT
1 GT
49957011 TATTCTTGTC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (76 bp):
GTGGTTGGTAAGGTAAGATTAGCAATGGGTTTACTAATATCATCTACAAATCTAAACTAAAGCCA
ACCCCAAGGTC
Found at i:49957931 original size:26 final size:26
Alignment explanation
Indices: 49957900--49957956 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
49957890 TAATCTAACT
49957900 TTTTATAA-A-TAAATATATTATAACAC
1 TTTTATAACAGTAAAT-TATTATAA-AC
49957926 TTTTATAACATGTAAATTATTATAAAC
1 TTTTATAACA-GTAAATTATTATAAAC
49957953 TTTT
1 TTTT
49957957 TGGCCATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 8 0.29
27 7 0.25
28 8 0.29
29 5 0.18
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (26 bp):
TTTTATAACAGTAAATTATTATAAAC
Found at i:49957957 original size:28 final size:26
Alignment explanation
Indices: 49957896--49957957 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 26
49957886 AACGTAATCT
49957896 AACTTTTTATAAATAAATATATTATA
1 AACTTTTTATAAATAAATATATTATA
49957922 ACAC-TTTTATAACATGTAAAT-TATTATA
1 A-ACTTTTTATAA-A--TAAATATATTATA
49957950 AACTTTTT
1 AACTTTTT
49957958 GGCCATAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
26 9 0.29
27 5 0.16
28 12 0.39
29 5 0.16
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.47
Consensus pattern (26 bp):
AACTTTTTATAAATAAATATATTATA
Found at i:49965336 original size:40 final size:39
Alignment explanation
Indices: 49965268--49965402 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 39
49965258 ACCAGTTTGG
* *
49965268 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAAACTGA
1 CACCCAGTGCCTCATCGGATAATCCGAAGT-ATAAATTGA
* * * * *
49965308 CACCCAGTGTCTCATTGGCTAAACCGAAG--TAAATTGG
1 CACCCAGTGCCTCATCGGATAATCCGAAGTATAAATTGA
* *
49965345 CAACCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGGA-TAATCCGAAGTA-TAAATTGA
*
49965386 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
49965403 ACTCGAAGTC
Statistics
Matches: 75, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
37 20 0.27
38 9 0.12
40 24 0.32
41 22 0.29
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAATCCGAAGTATAAATTGA
Found at i:49965393 original size:41 final size:40
Alignment explanation
Indices: 49965268--49965403 Score: 134
Period size: 41 Copynumber: 3.5 Consensus size: 40
49965258 ACCAGTTTGG
* * * *
49965268 CACCCAGTGCCTCATCGGATAATTCGAAGTAATAAACTGA
1 CACCCAGTGCCTCATCGAATAATCCGAAGTAGTAAATTGA
* * ** * *
49965308 CACCCAGTGTCTCATTGGCTAAACCG-A--AGTAAATTGG
1 CACCCAGTGCCTCATCGAATAATCCGAAGTAGTAAATTGA
*
49965345 CAACCAGTGCCTCATCGAATTAATCCGAAGTAGTAAATTGA
1 CACCCAGTGCCTCATCGAA-TAATCCGAAGTAGTAAATTGA
*
49965386 CACCCAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
49965404 CTCGAAGTCG
Statistics
Matches: 75, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
37 21 0.28
38 6 0.08
39 2 0.03
40 21 0.28
41 25 0.33
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (40 bp):
CACCCAGTGCCTCATCGAATAATCCGAAGTAGTAAATTGA
Found at i:49966308 original size:18 final size:17
Alignment explanation
Indices: 49966285--49966335 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
49966275 TTTCTTCTCG
49966285 TTCTCTTTTTCGTTTTGC
1 TTCTCTTTTTC-TTTTGC
* *
49966303 TTCTCTGTTTCTTTCTTTC
1 TTCTCTTTTTC-TT-TTGC
49966322 TT-TCTTTTTCTTTT
1 TTCTCTTTTTCTTTT
49966336 CTTTTCTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 2 0.07
17 2 0.07
18 19 0.68
19 5 0.18
ACGTcount: A:0.00, C:0.22, G:0.06, T:0.73
Consensus pattern (17 bp):
TTCTCTTTTTCTTTTGC
Found at i:49966352 original size:5 final size:5
Alignment explanation
Indices: 49966344--49966476 Score: 266
Period size: 5 Copynumber: 26.6 Consensus size: 5
49966334 TTCTTTTCTT
49966344 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
49966394 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
49966444 ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATA
49966477 CTTAAGTAAA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 128 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:49970555 original size:15 final size:16
Alignment explanation
Indices: 49970533--49970576 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
49970523 AATTTTAAAA
49970533 TATTTTTAAAATACTT
1 TATTTTTAAAATACTT
**
49970549 T-TTTTTAAAATTTTT
1 TATTTTTAAAATACTT
49970564 TATTTTTAAAATA
1 TATTTTTAAAATA
49970577 AATTTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTTTAAAATACTT
Found at i:49976527 original size:27 final size:27
Alignment explanation
Indices: 49976489--49976791 Score: 405
Period size: 27 Copynumber: 11.2 Consensus size: 27
49976479 ATTCATAGGC
* * *
49976489 AAATGACCGAAATACCTTCGAAGGATA
1 AAATGATCGAAATACCCTCGAAGGGTA
49976516 AAATGATCGAAATACCCTCGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
*
49976543 AAAT-AACTGAAATACCCTCGAAGGGTA
1 AAATGATC-GAAATACCCTCGAAGGGTA
* *
49976570 AAATGACCGAAATACCCTTGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* *
49976597 AAATGA-CTAAAATACCCTCAAAGGGTA
1 AAATGATC-GAAATACCCTCGAAGGGTA
*
49976624 AAATGA-CTGAAATACCCCCGAAGGGTA
1 AAATGATC-GAAATACCCTCGAAGGGTA
* *
49976651 AAATGATCAAAATACCCCCGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* *
49976678 AAATGACCGAAATACCCTCGATGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
49976705 AAATGATCGAAATACCCTCGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * *
49976732 AAATGATTGAAATACCCCCGATGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
*
49976759 AAATGATCGAAATGCCCTCGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
49976786 AAATGA
1 AAATGA
49976792 CTGTTATACC
Statistics
Matches: 246, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.01
27 240 0.98
28 3 0.01
ACGTcount: A:0.42, C:0.19, G:0.21, T:0.18
Consensus pattern (27 bp):
AAATGATCGAAATACCCTCGAAGGGTA
Found at i:49977174 original size:28 final size:28
Alignment explanation
Indices: 49977141--49977214 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
49977131 TTTACTGCAT
* * *
49977141 TGGGCTAAGGCCCATATTGTCACTGTAC
1 TGGGCTAAGGCCCACACTGTCACTGTAA
*
49977169 TGGGCTAAGGCCCACACTGTTACTGTAA
1 TGGGCTAAGGCCCACACTGTCACTGTAA
49977197 TGGGCTAAGGCCCACACT
1 TGGGCTAAGGCCCACACT
49977215 TACCGATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (28 bp):
TGGGCTAAGGCCCACACTGTCACTGTAA
Found at i:49985479 original size:112 final size:112
Alignment explanation
Indices: 49985266--49985480 Score: 322
Period size: 112 Copynumber: 1.9 Consensus size: 112
49985256 CTTCTTCTTC
* *
49985266 TTTTGCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGATAGCCAAACACCCCACCCGG
1 TTTTGCTTAAGAATATATTGAACCTTTTGACGCAAAGAGAGATGACAGCCAAACACCCCACCCGG
* * * **
49985331 GTTACTCAGCCCGACATATTCCTAATTTATTATATTTATATATGTTT
66 GTTACACAGCCCAACACATTCCTAAAATATTATATTTATATATGTTT
* * * *
49985378 TTTTTCTTAAGAATATATTGAACCTTTTGACGCAAAGAGAGATGACAGTCAAGCACCCCACCCTG
1 TTTTGCTTAAGAATATATTGAACCTTTTGACGCAAAGAGAGATGACAGCCAAACACCCCACCCGG
*
49985443 GTTACACAGCCCAACACATTCCTAAAATATTTTATTTA
66 GTTACACAGCCCAACACATTCCTAAAATATTATATTTA
49985481 ATTCCGGTCA
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
112 91 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (112 bp):
TTTTGCTTAAGAATATATTGAACCTTTTGACGCAAAGAGAGATGACAGCCAAACACCCCACCCGG
GTTACACAGCCCAACACATTCCTAAAATATTATATTTATATATGTTT
Found at i:49996215 original size:5 final size:5
Alignment explanation
Indices: 49996207--49996231 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
49996197 TTATTATATT
49996207 TTAAA TTAAA TTAAA TTAAA TTAAA
1 TTAAA TTAAA TTAAA TTAAA TTAAA
49996232 ATCTATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TTAAA
Found at i:49996283 original size:23 final size:23
Alignment explanation
Indices: 49996257--49996326 Score: 113
Period size: 23 Copynumber: 3.0 Consensus size: 23
49996247 ATTTAAAGTG
*
49996257 CATTGCAGAGAATTTTCATTGTT
1 CATTGCAGAGAATCTTCATTGTT
* *
49996280 CATTGTAGAGAATCTTCACTGTT
1 CATTGCAGAGAATCTTCATTGTT
49996303 CATTGCAGAGAATCTTCATTGTT
1 CATTGCAGAGAATCTTCATTGTT
49996326 C
1 C
49996327 GTCTTTCTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (23 bp):
CATTGCAGAGAATCTTCATTGTT
Found at i:49997115 original size:16 final size:15
Alignment explanation
Indices: 49997083--49997125 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
49997073 ATTTTAATAA
49997083 TATATAAAATCTAAAAT
1 TATATAAAA--TAAAAT
*
49997100 TTTATGAAAATAAAAT
1 TATAT-AAAATAAAAT
49997116 TATATAAAAT
1 TATATAAAAT
49997126 TACCAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 5 0.22
16 10 0.43
17 4 0.17
18 4 0.17
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (15 bp):
TATATAAAATAAAAT
Found at i:49998489 original size:3 final size:3
Alignment explanation
Indices: 49998481--49998535 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
49998471 TGAGGCCAAG
49998481 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
49998529 AAT AAT A
1 AAT AAT A
49998536 TAGCCTTTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:49998811 original size:16 final size:15
Alignment explanation
Indices: 49998788--49998831 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
49998778 TTAAAAATTG
*
49998788 AAATTAAAAAATATAT
1 AAATTAAAAAAT-TAA
*
49998804 ATATTAAAATAATTAA
1 AAATTAAAA-AATTAA
49998820 AAATTAAAAAAT
1 AAATTAAAAAAT
49998832 GACAGCACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 3 0.12
16 18 0.75
17 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATTAAAAAATTAA
Found at i:50005400 original size:3 final size:3
Alignment explanation
Indices: 50005387--50005433 Score: 58
Period size: 3 Copynumber: 15.7 Consensus size: 3
50005377 TAATATTAAT
* * * *
50005387 TTA TCA TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA GTG TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
50005434 TATATTAGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:50005475 original size:16 final size:16
Alignment explanation
Indices: 50005450--50005496 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
50005440 AGTTCATATA
50005450 TTTATCTATATAATT-T
1 TTTAT-TATATAATTAT
*
50005466 TTTATGTATATGCATTAT
1 TTTAT-TATAT-AATTAT
50005484 TTTATTATATAAT
1 TTTATTATATAAT
50005497 ATTATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (16 bp):
TTTATTATATAATTAT
Found at i:50005721 original size:16 final size:16
Alignment explanation
Indices: 50005697--50005738 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
50005687 TTCAACTTTA
50005697 ATATATTATTATGTAT
1 ATATATTATTATGTAT
* *
50005713 ATATGTTATTATTTAT
1 ATATATTATTATGTAT
50005729 AT-TATTATTA
1 ATATATTATTA
50005739 AATATTTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
ATATATTATTATGTAT
Found at i:50005733 original size:12 final size:13
Alignment explanation
Indices: 50005697--50005744 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
50005687 TTCAACTTTA
50005697 ATATATTATTATGT
1 ATATATTATTAT-T
50005711 ATATATGTTATTATT
1 ATATA--TTATTATT
50005726 -TATATTATTATT
1 ATATATTATTATT
*
50005738 AAATATT
1 ATATATT
50005745 TCCTTCCTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
12 8 0.27
13 5 0.17
14 9 0.30
15 1 0.03
16 7 0.23
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (13 bp):
ATATATTATTATT
Found at i:50005826 original size:21 final size:21
Alignment explanation
Indices: 50005783--50005835 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
50005773 TAATATATGT
**
50005783 ATATAAT-TTTATGTATTTTG
1 ATATAATATTTATGTATTGGG
*
50005803 ATATAATATTTATTTATTGGG
1 ATATAATATTTATGTATTGGG
*
50005824 ATACTATTATTT
1 ATA-TAATATTT
50005836 TATGAAGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 7 0.26
21 13 0.48
22 7 0.26
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (21 bp):
ATATAATATTTATGTATTGGG
Found at i:50014467 original size:46 final size:46
Alignment explanation
Indices: 50014405--50014497 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 46
50014395 AAAAAAAGAG
* * *
50014405 AAAGGATCAAGGTGAAAACCCACAAAGAGCGCTTTGAGTCCAAAAA
1 AAAGGATCAAAGTGAAAACCCACAAAGAGCACTTTGAATCCAAAAA
** *
50014451 AAAGGATCAAAGTGAAAACCCTTAAAGGGCACTTTGAATCCAAAAA
1 AAAGGATCAAAGTGAAAACCCACAAAGAGCACTTTGAATCCAAAAA
50014497 A
1 A
50014498 TGAAAAATGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.47, C:0.18, G:0.19, T:0.15
Consensus pattern (46 bp):
AAAGGATCAAAGTGAAAACCCACAAAGAGCACTTTGAATCCAAAAA
Found at i:50015843 original size:50 final size:50
Alignment explanation
Indices: 50015789--50016193 Score: 299
Period size: 50 Copynumber: 8.1 Consensus size: 50
50015779 CGAATCCTAT
* * * * * *
50015789 TTCCCTGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGC
1 TTCCCCGGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
* * ** * **
50015839 TTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAT
1 TTCCCCGGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
* * * * * * * * *
50015889 TTCTCTGGTGGTGCAGTGGAACAGATTAAAGCCCCATCGGTGAATCTTGC
1 TTCCCCGGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
* * ** * * *
50015939 TTCCCCGACATTGCAGTTAAAAAGATTAAAACTACAACAGCGAATCTTAC
1 TTCCCCGGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
* * * * * *
50015989 -TCCCCAAGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGC
1 TTCCCC-GGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
* * * ** *
50016039 TTCCCCGACATTGCGGTTAAAAAGATTAAAGCTACAACAGCGAATCTTGC
1 TTCCCCGGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
* ** * * *
50016089 CTCCCAAGCGATGCAGTGGAATAGATTAAAGCCACAACAGCGAATCATGC
1 TTCCCCGGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
* * * * ** * *
50016139 TTCCTCGACATTACAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC
1 TTCCCCGGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
50016189 TTCCC
1 TTCCC
50016194 AGGTGGATTA
Statistics
Matches: 256, Mismatches: 97, Indels: 4
0.72 0.27 0.01
Matches are distributed among these distances:
49 5 0.02
50 246 0.96
51 5 0.02
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (50 bp):
TTCCCCGGCGTTGCAGTGGAAAAGATTAAAGCCACAACAGCGAATCTTGC
Found at i:50015952 original size:100 final size:100
Alignment explanation
Indices: 50015800--50016194 Score: 619
Period size: 100 Copynumber: 4.0 Consensus size: 100
50015790 TCCCTGGCGG
50015800 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
* * ** * *
50015865 TAAAGCTACAACAGCGAATCTTATTTCTCTGGTGG
66 TAAAGCTACAACAGCGAATCTTACTTCCCAAGCGA
*
50015900 TGCAGTGGAACAGATTAAAGCCCCATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
* *
50015965 TAAAACTACAACAGCGAATCTTACTCCCCAAGCGA
66 TAAAGCTACAACAGCGAATCTTACTTCCCAAGCGA
*
50016000 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCGGTTAAAAAGAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
* *
50016065 TAAAGCTACAACAGCGAATCTTGCCTCCCAAGCGA
66 TAAAGCTACAACAGCGAATCTTACTTCCCAAGCGA
* * * * * * *
50016100 TGCAGTGGAATAGATTAAAGCCACAACAGCGAATCATGCTTCCTCGACATTACAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
50016165 TAAAGCTACAACAGCGAATCTTACTTCCCA
66 TAAAGCTACAACAGCGAATCTTACTTCCCA
50016195 GGTGGATTAA
Statistics
Matches: 270, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 270 1.00
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.24
Consensus pattern (100 bp):
TGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
TAAAGCTACAACAGCGAATCTTACTTCCCAAGCGA
Found at i:50016269 original size:87 final size:87
Alignment explanation
Indices: 50016112--50016277 Score: 271
Period size: 87 Copynumber: 1.9 Consensus size: 87
50016102 CAGTGGAATA
*
50016112 GATTAAAGCCACAACAGCGAATCATGCTTCCTCGACATTACAGTTAAAAAGATTAAAGCTACAAC
1 GATTAAAGCCACAACAGCGAATCATGCTTCCCCGACATTACAGTTAAAAAGATTAAAGCTACAAC
50016177 AGCGAATCTTACTTCCCAGGTG
66 AGCGAATCTTACTTCCCAGGTG
**
50016199 GATTAAAGCCACAACAGCGAATCATGCTTCCCCGACATTGTAGTTAAAAAGATTAAAG-TCACAA
1 GATTAAAGCCACAACAGCGAATCATGCTTCCCCGACATTACAGTTAAAAAGATTAAAGCT-ACAA
**
50016263 TGGCGAATCTTACTT
65 CAGCGAATCTTACTT
50016278 TCCTAAAGTT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
86 1 0.01
87 72 0.99
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (87 bp):
GATTAAAGCCACAACAGCGAATCATGCTTCCCCGACATTACAGTTAAAAAGATTAAAGCTACAAC
AGCGAATCTTACTTCCCAGGTG
Found at i:50019412 original size:18 final size:17
Alignment explanation
Indices: 50019379--50019417 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
50019369 TTGTATAAAT
50019379 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
50019397 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
50019414 TGTG
1 TGTG
50019418 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:50019670 original size:23 final size:23
Alignment explanation
Indices: 50019644--50019688 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
50019634 ATGTTATTGA
50019644 TCAGTGGTAGCTTCAGCTACATT
1 TCAGTGGTAGCTTCAGCTACATT
*
50019667 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCAGCTACAT
50019689 ATCTGTGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (23 bp):
TCAGTGGTAGCTTCAGCTACATT
Found at i:50023532 original size:48 final size:48
Alignment explanation
Indices: 50023469--50023580 Score: 188
Period size: 48 Copynumber: 2.3 Consensus size: 48
50023459 CCAATATACC
* *
50023469 TAATTTATATTACAAAGTTTGTTCCAATTTTTAATGTTGTAATGTATT
1 TAATTTATATTACAAAATTTGTTACAATTTTTAATGTTGTAATGTATT
* *
50023517 TAATTTATATAACAAAATTTGTTACAATTTTTAGTGTTGTAATGTATT
1 TAATTTATATTACAAAATTTGTTACAATTTTTAATGTTGTAATGTATT
50023565 TAATTTATATTACAAA
1 TAATTTATATTACAAA
50023581 CAAAATTTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50
Consensus pattern (48 bp):
TAATTTATATTACAAAATTTGTTACAATTTTTAATGTTGTAATGTATT
Found at i:50038792 original size:15 final size:15
Alignment explanation
Indices: 50038772--50038801 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50038762 TTATATGAAC
50038772 CATTTTTAAAAAATA
1 CATTTTTAAAAAATA
50038787 CATTTTTAAAAAATA
1 CATTTTTAAAAAATA
50038802 ATCTCGGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
CATTTTTAAAAAATA
Found at i:50039892 original size:16 final size:16
Alignment explanation
Indices: 50039867--50039900 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
50039857 TGTGTTTTGC
* *
50039867 TTTGATTGCATGGCAT
1 TTTGACTGCATAGCAT
50039883 TTTGACTGCATAGCAT
1 TTTGACTGCATAGCAT
50039899 TT
1 TT
50039901 CATCCTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (16 bp):
TTTGACTGCATAGCAT
Found at i:50042028 original size:50 final size:51
Alignment explanation
Indices: 50041941--50042076 Score: 150
Period size: 50 Copynumber: 2.7 Consensus size: 51
50041931 AGTTGCTAAG
* * * ** *
50041941 TCACATGTGTAGTAATATCTGCAGGCTACTACATGTACCGGA-ATG-ATAGG
1 TCACATATGTAGTACTATGTGCAGGCTACTATGTGTACCGGATA-GCATAGA
* * *
50041991 TCGCATATGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGCTTCGA
1 TCACATATGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGCATAGA
* *
50042042 TTACATGTGTAGTACTATGTGCAGGCTACTATGTG
1 TCACATATGTAGTACTATGTGCAGGCTACTATGTG
50042077 CAGGCTACTA
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
50 37 0.51
51 35 0.49
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (51 bp):
TCACATATGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGCATAGA
Found at i:50042073 original size:14 final size:14
Alignment explanation
Indices: 50042054--50042090 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
50042044 ACATGTGTAG
50042054 TACTATGTGCAGGC
1 TACTATGTGCAGGC
50042068 TACTATGTGCAGGC
1 TACTATGTGCAGGC
50042082 TACTATGTG
1 TACTATGTG
50042091 AACCGGGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (14 bp):
TACTATGTGCAGGC
Found at i:50042963 original size:327 final size:327
Alignment explanation
Indices: 50042369--50043022 Score: 1308
Period size: 327 Copynumber: 2.0 Consensus size: 327
50042359 AGTGAAATTA
50042369 TGAAAGAATACATTTTACAACAAAACAGTTTAGACAGCAACAGTTGTGTGACTTTTAAAAATCAC
1 TGAAAGAATACATTTTACAACAAAACAGTTTAGACAGCAACAGTTGTGTGACTTTTAAAAATCAC
50042434 CAAAAATGGTGAAAATTGAATTATAGAGTGAATAAGATATAAAATGAAAGCTTAATGAGTCTATT
66 CAAAAATGGTGAAAATTGAATTATAGAGTGAATAAGATATAAAATGAAAGCTTAATGAGTCTATT
50042499 TTTACATAAAAGAAATAGAGCAAGCAAAAGAGTTATATATTTTGAGATATTTGAATTTAGTGAGG
131 TTTACATAAAAGAAATAGAGCAAGCAAAAGAGTTATATATTTTGAGATATTTGAATTTAGTGAGG
50042564 CAGGTTCGGATTGATTTCAGAATCCCCTATTCTAAATTTGGAAAATAATAAAAAACTTATAAAAA
196 CAGGTTCGGATTGATTTCAGAATCCCCTATTCTAAATTTGGAAAATAATAAAAAACTTATAAAAA
50042629 ATAATTATGAGTTATAATTTATATGCTTAGAATCCTTAATGAGTCTATTTTCAAAAGAAAAAAAC
261 ATAATTATGAGTTATAATTTATATGCTTAGAATCCTTAATGAGTCTATTTTCAAAAGAAAAAAAC
50042694 AC
326 AC
50042696 TGAAAGAATACATTTTACAACAAAACAGTTTAGACAGCAACAGTTGTGTGACTTTTAAAAATCAC
1 TGAAAGAATACATTTTACAACAAAACAGTTTAGACAGCAACAGTTGTGTGACTTTTAAAAATCAC
50042761 CAAAAATGGTGAAAATTGAATTATAGAGTGAATAAGATATAAAATGAAAGCTTAATGAGTCTATT
66 CAAAAATGGTGAAAATTGAATTATAGAGTGAATAAGATATAAAATGAAAGCTTAATGAGTCTATT
50042826 TTTACATAAAAGAAATAGAGCAAGCAAAAGAGTTATATATTTTGAGATATTTGAATTTAGTGAGG
131 TTTACATAAAAGAAATAGAGCAAGCAAAAGAGTTATATATTTTGAGATATTTGAATTTAGTGAGG
50042891 CAGGTTCGGATTGATTTCAGAATCCCCTATTCTAAATTTGGAAAATAATAAAAAACTTATAAAAA
196 CAGGTTCGGATTGATTTCAGAATCCCCTATTCTAAATTTGGAAAATAATAAAAAACTTATAAAAA
50042956 ATAATTATGAGTTATAATTTATATGCTTAGAATCCTTAATGAGTCTATTTTCAAAAGAAAAAAAC
261 ATAATTATGAGTTATAATTTATATGCTTAGAATCCTTAATGAGTCTATTTTCAAAAGAAAAAAAC
50043021 AC
326 AC
50043023 AAATATCATC
Statistics
Matches: 327, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
327 327 1.00
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (327 bp):
TGAAAGAATACATTTTACAACAAAACAGTTTAGACAGCAACAGTTGTGTGACTTTTAAAAATCAC
CAAAAATGGTGAAAATTGAATTATAGAGTGAATAAGATATAAAATGAAAGCTTAATGAGTCTATT
TTTACATAAAAGAAATAGAGCAAGCAAAAGAGTTATATATTTTGAGATATTTGAATTTAGTGAGG
CAGGTTCGGATTGATTTCAGAATCCCCTATTCTAAATTTGGAAAATAATAAAAAACTTATAAAAA
ATAATTATGAGTTATAATTTATATGCTTAGAATCCTTAATGAGTCTATTTTCAAAAGAAAAAAAC
AC
Found at i:50052563 original size:46 final size:46
Alignment explanation
Indices: 50052472--50052563 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
50052462 AAGAAGGAGG
* * * * * *
50052472 AAAGACCAATGTGAAAGCCCACAAATGGCACTTTGGGTTCTAAAAA
1 AAAGACCAAGGTGAAAACCCACAAAGGGCACTTTGAGTCCAAAAAA
*
50052518 AAAGACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAAAAA
1 AAAGACCAAGGTGAAAACCCACAAAGGGCACTTTGAGTCCAAAAAA
50052564 TAAAAATAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15
Consensus pattern (46 bp):
AAAGACCAAGGTGAAAACCCACAAAGGGCACTTTGAGTCCAAAAAA
Found at i:50052600 original size:15 final size:15
Alignment explanation
Indices: 50052558--50052593 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
50052548 CTTTGAGTCC
50052558 AAAAAAT-AAAAATA
1 AAAAAATAAAAAATA
50052572 AAAAAATAAAAAATA
1 AAAAAATAAAAAATA
50052587 AAGAAAA
1 AA-AAAA
50052594 AGAAAATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.35
15 9 0.45
16 4 0.20
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (15 bp):
AAAAAATAAAAAATA
Found at i:50053498 original size:24 final size:24
Alignment explanation
Indices: 50053456--50053536 Score: 126
Period size: 24 Copynumber: 3.4 Consensus size: 24
50053446 TGTCCCAAAC
*
50053456 TTACAGTAGATTGAACCTTGAAGA
1 TTACAGTGGATTGAACCTTGAAGA
* *
50053480 TTACAGTGGATCGAGCCTTGAAGA
1 TTACAGTGGATTGAACCTTGAAGA
*
50053504 TTACAGTGGATTGAACCTTAAAGA
1 TTACAGTGGATTGAACCTTGAAGA
50053528 TTACAGTGG
1 TTACAGTGG
50053537 GGACAATCCG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (24 bp):
TTACAGTGGATTGAACCTTGAAGA
Found at i:50053931 original size:46 final size:46
Alignment explanation
Indices: 50053832--50053935 Score: 154
Period size: 46 Copynumber: 2.3 Consensus size: 46
50053822 GTTTTAGTGG
* *
50053832 AACAGATTAAAGCTGAAGGCGGCGAATCTTGTTTCCCTGGCATTGG
1 AACAGATTAAAGCTGAAGGCAGCGAATCTTGTTTCCCTGGCATTGC
* **
50053878 AACAGATTAAAGCTGAAGGCAGCGAATCTTGTTTCCTTGGTGTTGC
1 AACAGATTAAAGCTGAAGGCAGCGAATCTTGTTTCCCTGGCATTGC
*
50053924 AATAGATTAAAG
1 AACAGATTAAAG
50053936 AAGAATGCAT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (46 bp):
AACAGATTAAAGCTGAAGGCAGCGAATCTTGTTTCCCTGGCATTGC
Found at i:50054049 original size:21 final size:21
Alignment explanation
Indices: 50054025--50054064 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50054015 CATTGCAGTA
* *
50054025 GAGCGGATTGAAGCTGAAGAG
1 GAGCAGATTAAAGCTGAAGAG
50054046 GAGCAGATTAAAGCTGAAG
1 GAGCAGATTAAAGCTGAAG
50054065 GCAGCAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.38, T:0.15
Consensus pattern (21 bp):
GAGCAGATTAAAGCTGAAGAG
Found at i:50056340 original size:15 final size:15
Alignment explanation
Indices: 50056320--50056349 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
50056310 TTATACGAAC
50056320 CATTTTTAAAAAATA
1 CATTTTTAAAAAATA
50056335 CATTTTTAAAAAATA
1 CATTTTTAAAAAATA
50056350 ATCTCGGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
CATTTTTAAAAAATA
Found at i:50059363 original size:11 final size:11
Alignment explanation
Indices: 50059347--50059373 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
50059337 CATGAACTCG
50059347 TTGAAATCTCT
1 TTGAAATCTCT
50059358 TTGAAATCTCT
1 TTGAAATCTCT
50059369 TTGAA
1 TTGAA
50059374 GCCGGGAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (11 bp):
TTGAAATCTCT
Found at i:50059682 original size:18 final size:19
Alignment explanation
Indices: 50059659--50059702 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
50059649 CAGGGGACGA
*
50059659 GTCAGCAAA-CTCGTCCAC
1 GTCAGCAAACCACGTCCAC
50059677 GTCAGCAAACCACGTCCAC
1 GTCAGCAAACCACGTCCAC
*
50059696 GTAAGCA
1 GTCAGCA
50059703 CGGTTTGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.32, C:0.36, G:0.18, T:0.14
Consensus pattern (19 bp):
GTCAGCAAACCACGTCCAC
Found at i:50059913 original size:11 final size:11
Alignment explanation
Indices: 50059891--50059964 Score: 87
Period size: 11 Copynumber: 6.6 Consensus size: 11
50059881 AACAACTCCT
50059891 CTCTCAAATTTC
1 CTCTC-AATTTC
50059903 CTCTCAATTTC
1 CTCTCAATTTC
*
50059914 CTCTAAATTTC
1 CTCTCAATTTC
*
50059925 CTCTCAATTTG
1 CTCTCAATTTC
*
50059936 CTCTCAAATTC
1 CTCTCAATTTC
*
50059947 CTTCTAAATTT-
1 C-TCTCAATTTC
50059958 CTCTCAA
1 CTCTCAA
50059965 ATCCATATCT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
10 5 0.09
11 36 0.68
12 12 0.23
ACGTcount: A:0.24, C:0.31, G:0.01, T:0.43
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:50059924 original size:22 final size:22
Alignment explanation
Indices: 50059890--50059966 Score: 104
Period size: 22 Copynumber: 3.5 Consensus size: 22
50059880 AAACAACTCC
50059890 TCTCTCAAATTTCCTCTCAATT
1 TCTCTCAAATTTCCTCTCAATT
50059912 TC-CTCTAAATTTCCTCTCAATT
1 TCTCTC-AAATTTCCTCTCAATT
*
50059934 TGCTCTCAAA-TTCCTTCTAAATT
1 T-CTCTCAAATTTCC-TCTCAATT
50059957 TCTCTCAAAT
1 TCTCTCAAAT
50059967 CCATATCTAA
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
21 3 0.06
22 31 0.63
23 12 0.24
24 3 0.06
ACGTcount: A:0.25, C:0.30, G:0.01, T:0.44
Consensus pattern (22 bp):
TCTCTCAAATTTCCTCTCAATT
Found at i:50059940 original size:33 final size:33
Alignment explanation
Indices: 50059890--50059964 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 33
50059880 AAACAACTCC
*
50059890 TCTCTCAAATTTCCTCTCAATTTCC-TCTAAATT
1 TCTCTC-AATTTCCTCTCAAATTCCTTCTAAATT
*
50059923 TCCTCTCAATTTGCTCTCAAATTCCTTCTAAATT
1 T-CTCTCAATTTCCTCTCAAATTCCTTCTAAATT
50059957 TCTCTCAA
1 TCTCTCAA
50059965 ATCCATATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 24 0.63
34 14 0.37
ACGTcount: A:0.24, C:0.31, G:0.01, T:0.44
Consensus pattern (33 bp):
TCTCTCAATTTCCTCTCAAATTCCTTCTAAATT
Found at i:50060863 original size:127 final size:125
Alignment explanation
Indices: 50060579--50061142 Score: 810
Period size: 126 Copynumber: 4.5 Consensus size: 125
50060569 CCAAACATGT
* *
50060579 TACTGTAGCAAAAGCGCGTCCACATGAGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * *
50060644 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACC
66 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGACC
*
50060703 TACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTGC
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGC
* * *
50060767 TTGCAGCGTTGTTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTTTCAAGACC
65 TTGAAGCGTT-TTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTA-TTTTTCCAAGACC
*
50060830 TACTGTAGCAAAAACGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * *
50060895 TGAAGCGTTTTTT-TAACTATTTTCTTACAAACGTCAACTCGAAATTATTTCTTCCAAGACC
66 TGAAGCGTTTTTTAT-ACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAAGACC
* * * *
50060956 AACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACACATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * *
50061021 TGAAGCGTTTTTTAAACTATTTTCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACC
66 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGACC
* * * * * * *
50061081 TACTGTAGCAAAAGCGCGTACACATGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCT
1 TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT
50061143 ACTTTGATTT
Statistics
Matches: 395, Mismatches: 37, Indels: 15
0.88 0.08 0.03
Matches are distributed among these distances:
123 2 0.01
124 64 0.16
125 64 0.16
126 184 0.47
127 79 0.20
128 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (125 bp):
TACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGACC
Found at i:50061083 original size:251 final size:251
Alignment explanation
Indices: 50060579--50061142 Score: 846
Period size: 251 Copynumber: 2.2 Consensus size: 251
50060569 CCAAACATGT
*
50060579 TACTGTAGCAAAAGCGCGTCCACATGAGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * *
50060644 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTACTGT
66 AGAAGCGATTTTATACTATTTGCTCACAAACGTCAACTCGAAATTATTTTTCCAAGACCAACTGT
* *
50060709 AGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGCAGC
131 AGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAAGC
* *
50060774 GTTGTTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTTTCAAGACC
196 GTTGTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTTCCAAGACC
* *
50060830 TACTGTAGCAAAAACGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCGTCCACATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
* * * * *
50060895 TGAAGCGTTTTTTTAACTATTTTCTTACAAACGTCAACTCGAAATTATTTCTTCCAAGACCAACT
66 AGAAGCGATTTTAT-ACTATTTGCTCACAAACGTCAACTCGAAATTATTT-TTCCAAGACCAACT
*
50060960 GTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACACATTCTTCTCATAA-AGCATCCTGCTTGA
129 GTAGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTGCTTGA
* * *
50061024 AGCGTT-TTTTAAACTATTTTCTCAGAAACGTCAACTCGAAATTA-TTTTTCCAGGACC
193 AGCGTTGTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTTCCAAGACC
* * * * * *
50061081 TACTGTAGCAAAAGCGCGTACACATGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCT
1 TACTGTAGCAAAAGCGCGTCCACATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT
50061143 ACTTTGATTT
Statistics
Matches: 282, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
251 138 0.49
252 66 0.23
253 76 0.27
254 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (251 bp):
TACTGTAGCAAAAGCGCGTCCACATGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
AGAAGCGATTTTATACTATTTGCTCACAAACGTCAACTCGAAATTATTTTTCCAAGACCAACTGT
AGCAAAAGCGCATCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAAGC
GTTGTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTTCCAAGACC
Found at i:50061283 original size:8 final size:9
Alignment explanation
Indices: 50061260--50061290 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
50061250 ATTTTTTTCT
*
50061260 CTAAAAACC
1 CTAAAAATC
50061269 CTAAAAATC
1 CTAAAAATC
50061278 CTAAAAATC
1 CTAAAAATC
50061287 CTAA
1 CTAA
50061291 CCAGGAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (9 bp):
CTAAAAATC
Found at i:50071708 original size:31 final size:31
Alignment explanation
Indices: 50071666--50071734 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
50071656 AGTGCAATTA
* * *
50071666 TATACATGAAATTTTGATTGCGGTTCAAATG
1 TATAAATGAAATTTTAATTGCGATTCAAATG
** *
50071697 TATAAATGAAATTTTAATTTTGATTCAAGTG
1 TATAAATGAAATTTTAATTGCGATTCAAATG
50071728 TATAAAT
1 TATAAAT
50071735 TTAAATAAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (31 bp):
TATAAATGAAATTTTAATTGCGATTCAAATG
Found at i:50074096 original size:19 final size:20
Alignment explanation
Indices: 50074059--50074102 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
50074049 TAAAAATGAT
* *
50074059 TAAAAAATCAGAAACAATTA
1 TAAAAAATCAAAAAAAATTA
50074079 TAAAAAAT-AAAAAAAATTA
1 TAAAAAATCAAAAAAAATTA
50074098 TAAAA
1 TAAAA
50074103 TTATTAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.20
Consensus pattern (20 bp):
TAAAAAATCAAAAAAAATTA
Found at i:50074102 original size:10 final size:10
Alignment explanation
Indices: 50074059--50074225 Score: 79
Period size: 9 Copynumber: 17.5 Consensus size: 10
50074049 TAAAAATGAT
*
50074059 TAAAAAATCA
1 TAAAAAATTA
* *
50074069 GAAACAATTA
1 TAAAAAATTA
50074079 TAAAAAA-TA
1 TAAAAAATTA
*
50074088 AAAAAAATTA
1 TAAAAAATTA
50074098 T--AAAATTA
1 TAAAAAATTA
* **
50074106 TTAACTA-T-
1 TAAAAAATTA
50074114 TAAAAAA-TA
1 TAAAAAATTA
*
50074123 TTAAAAATTGA
1 TAAAAAATT-A
* *
50074134 TATAAACTTA
1 TAAAAAATTA
50074144 T-AAAAATTA
1 TAAAAAATTA
*
50074153 TGAAAAA-TA
1 TAAAAAATTA
*
50074162 TAAAAACTTA
1 TAAAAAATTA
*
50074172 T-AAATATTA
1 TAAAAAATTA
50074181 TAAAAATATT-
1 TAAAAA-ATTA
*
50074191 T-AAAAA-TG
1 TAAAAAATTA
*
50074199 TAATAAATTA
1 TAAAAAATTA
50074209 TACAAAAAATTA
1 T--AAAAAATTA
50074221 TAAAA
1 TAAAA
50074226 TTAATATATT
Statistics
Matches: 116, Mismatches: 26, Indels: 30
0.67 0.15 0.17
Matches are distributed among these distances:
7 1 0.01
8 15 0.13
9 44 0.38
10 37 0.32
11 10 0.09
12 9 0.08
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:50074195 original size:28 final size:28
Alignment explanation
Indices: 50074114--50074189 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
50074104 TATTAACTAT
* * *
50074114 TAAAAAATATTAAAAATTGATATAAACTTA
1 TAAAAATTATGAAAAA-T-ATAAAAACTTA
50074144 TAAAAATTATGAAAAATATAAAAACTTA
1 TAAAAATTATGAAAAATATAAAAACTTA
*
50074172 TAAATATTAT-AAAAATAT
1 TAAAAATTATGAAAAATAT
50074190 TTAAAAATGT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 8 0.19
28 19 0.45
29 1 0.02
30 14 0.33
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (28 bp):
TAAAAATTATGAAAAATATAAAAACTTA
Found at i:50074196 original size:37 final size:35
Alignment explanation
Indices: 50074079--50074210 Score: 115
Period size: 37 Copynumber: 3.6 Consensus size: 35
50074069 GAAACAATTA
* * *
50074079 TAAAAAATAAAAAAAATTATAAAATTAT-TAACTAT
1 TAAAAAAT-ATAAAAATTATAAAATTATAAAAATAT
50074114 TAAAAAATATTAAAAATTGATATAAACTTATAAAAAT-T
1 TAAAAAATA-TAAAAATT-ATA-AAA-TTATAAAAATAT
*
50074152 ATGAAAAATATAAAAACTTATAAATATTATAAAAATAT
1 -TAAAAAATATAAAAA-TTATAAA-ATTATAAAAATAT
* *
50074190 TTAAAAATGTAATAAATTATA
1 TAAAAAATATAA-AAATTATA
50074211 CAAAAAATTA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
34 1 0.01
35 15 0.19
36 3 0.04
37 30 0.37
38 19 0.23
39 13 0.16
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (35 bp):
TAAAAAATATAAAAATTATAAAATTATAAAAATAT
Found at i:50075730 original size:86 final size:86
Alignment explanation
Indices: 50075605--50075781 Score: 300
Period size: 86 Copynumber: 2.1 Consensus size: 86
50075595 ATTTTACGTG
* * * *
50075605 AAAAACCCTCAAAGAGGGAAAAACCATGGATAAATGAGGCATTGAATTTTCACTAAATGAGTAAA
1 AAAAACCCTCAAACAGAGAAAAACCATGGATAAAAGAGGCATCGAATTTTCACTAAATGAGTAAA
*
50075670 CAAACGATAGTACAATATGGA
66 CAAACGAGAGTACAATATGGA
*
50075691 AAAAACCCTCAAACAGAGAAAAACCATGGATAAAAGAGGCATCGACTTTTCACTAAATGAGTAAA
1 AAAAACCCTCAAACAGAGAAAAACCATGGATAAAAGAGGCATCGAATTTTCACTAAATGAGTAAA
50075756 CAAACGAGAGTACAATATGGA
66 CAAACGAGAGTACAATATGGA
50075777 AAAAA
1 AAAAA
50075782 TAAACCTAAA
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (86 bp):
AAAAACCCTCAAACAGAGAAAAACCATGGATAAAAGAGGCATCGAATTTTCACTAAATGAGTAAA
CAAACGAGAGTACAATATGGA
Found at i:50076783 original size:11 final size:10
Alignment explanation
Indices: 50076752--50076919 Score: 90
Period size: 10 Copynumber: 17.4 Consensus size: 10
50076742 AATTCAAGTT
*
50076752 TTTTTTATAA
1 TTTTATATAA
50076762 TTTT-TATAA
1 TTTTATATAA
50076771 TTTTATATCAA
1 TTTTATAT-AA
*
50076782 TTTTAATATAT
1 TTTT-ATATAA
50076793 TTTTA-ATAA
1 TTTTATATAA
* *
50076802 TTTTTAAAAATA
1 -TTTTATATA-A
* *
50076814 TTTTAAATAT
1 TTTTATATAA
50076824 TTTTATA-ATA
1 TTTTATATA-A
*
50076834 TTTTAAAT-A
1 TTTTATATAA
50076843 TTTTAT-T-A
1 TTTTATATAA
*
50076851 GTTTATATCAA
1 TTTTATAT-AA
50076862 TTTTA-ATAA
1 TTTTATATAA
50076871 TTTTA-AT--
1 TTTTATATAA
**
50076878 TTTTA-ACGA
1 TTTTATATAA
*
50076887 TTTTATAAAA
1 TTTTATATAA
*
50076897 TTTTATAAAA
1 TTTTATATAA
50076907 TTTTATA-AA
1 TTTTATATAA
50076916 TTTT
1 TTTT
50076920 TTTCATGATT
Statistics
Matches: 130, Mismatches: 14, Indels: 29
0.75 0.08 0.17
Matches are distributed among these distances:
7 6 0.05
8 7 0.05
9 40 0.31
10 46 0.35
11 26 0.20
12 5 0.04
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (10 bp):
TTTTATATAA
Found at i:50076875 original size:9 final size:9
Alignment explanation
Indices: 50076753--50076877 Score: 58
Period size: 9 Copynumber: 12.8 Consensus size: 9
50076743 ATTCAAGTTT
*
50076753 TTTTTATAA
1 TTTTAATAA
*
50076762 TTTTTATAA
1 TTTTAATAA
50076771 TTTTATATCAA
1 TTTTA-AT-AA
50076782 TTTTAATATA
1 TTTTAATA-A
50076792 TTTTTAATAA
1 -TTTTAATAA
*
50076802 TTTTTAAAAATA
1 -TTTT-AATA-A
50076814 TTTTAA-ATA
1 TTTTAATA-A
*
50076823 TTTTTATAATA
1 TTTTAAT-A-A
50076834 TTTTAA-ATA
1 TTTTAATA-A
*
50076843 TTTT-ATTA
1 TTTTAATAA
*
50076851 GTTTATATCAA
1 TTTTA-AT-AA
50076862 TTTTAATAA
1 TTTTAATAA
50076871 TTTTAAT
1 TTTTAAT
50076878 TTTTAACGAT
Statistics
Matches: 96, Mismatches: 8, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
8 5 0.05
9 38 0.40
10 17 0.18
11 35 0.36
12 1 0.01
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (9 bp):
TTTTAATAA
Found at i:50077469 original size:28 final size:29
Alignment explanation
Indices: 50077423--50077484 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 29
50077413 TTTTTTAAAA
50077423 ATTTTGAAAATTCAAAAAAAT-ATAAAAATT
1 ATTTTGAAAATT--AAAAAATCATAAAAATT
* *
50077453 ATTTTTAAAATT-AAAAATCATTAAAATT
1 ATTTTGAAAATTAAAAAATCATAAAAATT
50077481 ATTT
1 ATTT
50077485 AAAAAGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 6 0.21
28 12 0.41
30 11 0.38
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (29 bp):
ATTTTGAAAATTAAAAAATCATAAAAATT
Found at i:50078353 original size:25 final size:23
Alignment explanation
Indices: 50078324--50078392 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 23
50078314 AATAAAAACA
50078324 TAAAAAATTAAAGAAATTATAAATT
1 TAAAAAA-TAAA-AAATTATAAATT
*
50078349 TAAAAAAGTAAAAAATATATAATTT
1 TAAAAAA-TAAAAAAT-TATAAATT
*
50078374 TTAAAAATAAAAAAATTAT
1 TAAAAAAT-AAAAAATTAT
50078393 GAAAAAAACT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
24 8 0.21
25 31 0.79
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (23 bp):
TAAAAAATAAAAAATTATAAATT
Found at i:50079542 original size:37 final size:37
Alignment explanation
Indices: 50079467--50079553 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
50079457 TGGGAGGATT
* ***
50079467 TTTGCAGAGAATCGTTACTGTTCAATTTTGTTTCTTC
1 TTTGCAGAGAATCGTTACAGTTCAATTTTGTCAATTC
*
50079504 TTTGCAGAGAATCTTTACAGTTC-ATTTTCGTCAATTC
1 TTTGCAGAGAATCGTTACAGTTCAATTTT-GTCAATTC
*
50079541 TTTGTAGAGAATC
1 TTTGCAGAGAATC
50079554 AATCCTGTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 5 0.12
37 38 0.88
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (37 bp):
TTTGCAGAGAATCGTTACAGTTCAATTTTGTCAATTC
Found at i:50079590 original size:37 final size:36
Alignment explanation
Indices: 50079549--50079642 Score: 98
Period size: 36 Copynumber: 2.6 Consensus size: 36
50079539 TCTTTGTAGA
* *
50079549 GAATCAATCCTGTTCATCTCCGTCATTTCTTTACAGT
1 GAATCAATCCTGTTCATCTCCG-CATTGCTTTACAGG
* * * * *
50079586 GAATCATTCTTGTTCATCTCTGCCTTGCTTTGCAGG
1 GAATCAATCCTGTTCATCTCCGCATTGCTTTACAGG
* *
50079622 GAATCACTCCTGCTCATCTCC
1 GAATCAATCCTGTTCATCTCC
50079643 CTCTTGTTTA
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
36 27 0.59
37 19 0.41
ACGTcount: A:0.18, C:0.30, G:0.14, T:0.38
Consensus pattern (36 bp):
GAATCAATCCTGTTCATCTCCGCATTGCTTTACAGG
Found at i:50079639 original size:36 final size:37
Alignment explanation
Indices: 50079503--50079642 Score: 104
Period size: 37 Copynumber: 3.8 Consensus size: 37
50079493 TTTGTTTCTT
** * * * *
50079503 CTTTGCAGAGAATCTTTACAGTTCATTTTCGTCAATT-
1 CTTTGCAGAGAATCAATCCTGTTCATCTCCGTC-ATTG
* *
50079540 CTTTGTAGAGAATCAATCCTGTTCATCTCCGTCATTT
1 CTTTGCAGAGAATCAATCCTGTTCATCTCCGTCATTG
* * * * * *
50079577 CTTTACAGTGAATCATTCTTGTTCATCTCTG-CCTTG
1 CTTTGCAGAGAATCAATCCTGTTCATCTCCGTCATTG
* * *
50079613 CTTTGCAGGGAATCACTCCTGCTCATCTCC
1 CTTTGCAGAGAATCAATCCTGTTCATCTCC
50079643 CTCTTGTTTA
Statistics
Matches: 81, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
36 30 0.37
37 51 0.63
ACGTcount: A:0.20, C:0.26, G:0.14, T:0.40
Consensus pattern (37 bp):
CTTTGCAGAGAATCAATCCTGTTCATCTCCGTCATTG
Found at i:50084291 original size:30 final size:31
Alignment explanation
Indices: 50084223--50084281 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
50084213 CACCCTTAAA
** *
50084223 ATATTTACACTATTGGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
50084254 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
50084282 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:50090325 original size:16 final size:16
Alignment explanation
Indices: 50090294--50090334 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
50090284 ATTCACACTT
50090294 TTGAT-TAATCATCAA
1 TTGATATAATCATCAA
50090309 TTGATATAATACA-CAA
1 TTGATATAAT-CATCAA
*
50090325 TAGATATAAT
1 TTGATATAAT
50090335 GCTATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 5 0.22
16 16 0.70
17 2 0.09
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.37
Consensus pattern (16 bp):
TTGATATAATCATCAA
Found at i:50091572 original size:19 final size:16
Alignment explanation
Indices: 50091542--50091591 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 16
50091532 TATTGCACTT
50091542 TTTTAT-ATTATTTATA
1 TTTTATAATTATTT-TA
50091558 TTTAATATAATTATTCTTA
1 TTT--TATAATTATT-TTA
50091577 TTTTATAATTATTTT
1 TTTTATAATTATTTT
50091592 TAAATTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 5 0.17
17 10 0.33
18 3 0.10
19 11 0.37
20 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTATAATTATTTTA
Found at i:50091958 original size:14 final size:15
Alignment explanation
Indices: 50091939--50091967 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50091929 GTTAGTGTTG
50091939 ATTAAT-TAAATAAA
1 ATTAATGTAAATAAA
50091953 ATTAATGTAAATAAA
1 ATTAATGTAAATAAA
50091968 TAAATATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (15 bp):
ATTAATGTAAATAAA
Found at i:50102225 original size:27 final size:27
Alignment explanation
Indices: 50102185--50102242 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
50102175 TGTGTGAAAT
*
50102185 ATTATAAAGCAAGTTATCTAAATTTTA
1 ATTATAAAGCAAGTTACCTAAATTTTA
* *
50102212 ATTATAAAGTAAGTTACCTACATTTTA
1 ATTATAAAGCAAGTTACCTAAATTTTA
50102239 ATTA
1 ATTA
50102243 AAACATAGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (27 bp):
ATTATAAAGCAAGTTACCTAAATTTTA
Found at i:50105161 original size:41 final size:40
Alignment explanation
Indices: 50105116--50105217 Score: 123
Period size: 41 Copynumber: 2.5 Consensus size: 40
50105106 TGATTCAGTA
50105116 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * * *
50105157 CACCGGCATTAAGCCTGCTAGACATTTTGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
* *
50105198 CACCAGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
50105218 AGCTCTAAGC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
40 2 0.04
41 49 0.92
42 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:50106886 original size:13 final size:13
Alignment explanation
Indices: 50106868--50106892 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50106858 CAATCAAATG
50106868 CACACAAAATAAA
1 CACACAAAATAAA
50106881 CACACAAAATAA
1 CACACAAAATAA
50106893 TATTAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:50113428 original size:112 final size:113
Alignment explanation
Indices: 50113281--50113514 Score: 282
Period size: 113 Copynumber: 2.1 Consensus size: 113
50113271 GATTCACAAA
*
50113281 AAGCGCCGCAAAAAAATAAGGCCAACGACGTCG-TTT-ATTGAGTTTTTGGGCCATTAGCGGCGT
1 AAGCGCCGCAAAAAAATAAGGCCAACGACGCCGTTTTCATTG-GTTTTTGGGCCATTAGCGGCGT
*
50113344 TTT-TACAAAAGCGCC-CTAATGCTCCTG-TCTTTAGCGGCG-TTTTCTGAG
65 TTTCT-CAAAAGCGCCGCTAATGAT-CTGTTCTTTAGCGGCGTTTTTCTG-G
* * * * *
50113392 AAGCGCCGCAAAAAACCTAAGGGCAACGACGCCGTTTTCTTTGTTTTTTGGGCCTTTAGCGGCGT
1 AAGCGCCGCAAAAAA-ATAAGGCCAACGACGCCGTTTTCATTGGTTTTTGGGCCATTAGCGGCGT
* * * *
50113457 TTTCTTAAAAGCGCCGCTAATGATTTGTTTTTTAGCGGCGTTTTTCTGT
65 TTTCTCAAAAGCGCCGCTAATGATCTGTTCTTTAGCGGCGTTTTTCTGG
50113506 AAGCGCCGC
1 AAGCGCCGC
50113515 TAATAGTAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
111 15 0.14
112 15 0.14
113 37 0.35
114 31 0.30
115 7 0.07
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (113 bp):
AAGCGCCGCAAAAAAATAAGGCCAACGACGCCGTTTTCATTGGTTTTTGGGCCATTAGCGGCGTT
TTCTCAAAAGCGCCGCTAATGATCTGTTCTTTAGCGGCGTTTTTCTGG
Found at i:50113898 original size:18 final size:21
Alignment explanation
Indices: 50113852--50113900 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
50113842 TAGTTCGACT
50113852 AAATTAATATATAAATCAAAC
1 AAATTAATATATAAATCAAAC
* *
50113873 AAAGTAATATA-AAA-C-ACC
1 AAATTAATATATAAATCAAAC
50113891 AAATTAATAT
1 AAATTAATAT
50113901 CGTGATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 11 0.44
19 1 0.04
20 3 0.12
21 10 0.40
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATTAATATATAAATCAAAC
Found at i:50114184 original size:15 final size:16
Alignment explanation
Indices: 50114166--50114196 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
50114156 GCTTTAAGAC
50114166 TTAGGGTT-TAGGGGT
1 TTAGGGTTATAGGGGT
50114181 TTAGGGTTATAGGGGT
1 TTAGGGTTATAGGGGT
50114197 CGTGTTAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.16, C:0.00, G:0.45, T:0.39
Consensus pattern (16 bp):
TTAGGGTTATAGGGGT
Found at i:50114563 original size:14 final size:14
Alignment explanation
Indices: 50114488--50114565 Score: 66
Period size: 14 Copynumber: 5.6 Consensus size: 14
50114478 TCGGATGTAA
*
50114488 GGGTTTGTGGTTTG
1 GGGTTTGGGGTTTG
50114502 GGGTTTGGGGTTTG
1 GGGTTTGGGGTTTG
* * *
50114516 GGATTTGGGTTTTT
1 GGGTTTGGGGTTTG
* * * *
50114530 GAGTTTAGAGTTTA
1 GGGTTTGGGGTTTG
**
50114544 ATGTTTGGGGTTTG
1 GGGTTTGGGGTTTG
50114558 GGGTTTGG
1 GGGTTTGG
50114566 AAATTTAAGG
Statistics
Matches: 47, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
14 47 1.00
ACGTcount: A:0.08, C:0.00, G:0.45, T:0.47
Consensus pattern (14 bp):
GGGTTTGGGGTTTG
Found at i:50115388 original size:230 final size:230
Alignment explanation
Indices: 50114984--50115492 Score: 761
Period size: 230 Copynumber: 2.2 Consensus size: 230
50114974 AAGAAAACGG
*
50114984 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTATACAAAACGCCGCAACTATGTTTTCTTTGTTA
1 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTA-ATAAAACGCCGCAACTATGTTTTCTTTGTTA
* * * ** *
50115049 CGGGAACGGCGTCGTTTTCCATTGTTATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
65 CAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
*
50115114 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCATTTATATATA
130 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATA
* * **
50115179 AACGTCGCAAACTCGAAATGGTGTTACGAAAAATGA
195 AACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
*
50115215 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGATAAAACGCCGCAAGTATGTTTTCTTTGTTA
1 CGCCGTTTTCTTATTACATTTAGTGGCGTTTTA-ATAAAACGCCGCAACTATGTTTTCTTTGTTA
*
50115280 CAGAAACGGCATCGTTTT-CAAGGATATTTGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
65 CAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTT
* * *
50115344 AAAGATTACAGGAGTTTGCTTTAAACGACTGCGTTTGACCTTATATTTAGTGGCGCTTATATATA
130 AAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATA
*
50115409 AACGCCGCAAAATCGAAATGGTGTTACGGAAAACAA
195 AACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
* *** *
50115445 CGCCGTTTACTTAGTTGGTTTTAGTGGCGCTTTT-ATTAAACGCCGCAA
1 CGCCGTTTTCTTA-TTACATTTAGTGGCG-TTTTAATAAAACGCCGCAA
50115493 ATTTGCATTA
Statistics
Matches: 252, Mismatches: 24, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
230 159 0.63
231 89 0.35
232 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (230 bp):
CGCCGTTTTCTTATTACATTTAGTGGCGTTTTAATAAAACGCCGCAACTATGTTTTCTTTGTTAC
AGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATATATTTTA
AAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTATATATAA
ACGCCGCAAAATCGAAATGGTGTTACGAAAAACAA
Found at i:50115844 original size:19 final size:19
Alignment explanation
Indices: 50115822--50115865 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
50115812 CAGACATCTC
*
50115822 CCCCAAATCCCTAAAATTT
1 CCCCAAATCCCTAAAAGTT
* *
50115841 CCCCTAATCCCTAACAGTT
1 CCCCAAATCCCTAAAAGTT
50115860 CCCCAA
1 CCCCAA
50115866 CGTAGTCCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.43, G:0.02, T:0.23
Consensus pattern (19 bp):
CCCCAAATCCCTAAAAGTT
Found at i:50117404 original size:20 final size:20
Alignment explanation
Indices: 50117379--50117440 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
50117369 TACAATTTCT
50117379 TAACTTATATAATATTAAGA
1 TAACTTATATAATATTAAGA
*
50117399 TAACTTATATAATATT-ACA
1 TAACTTATATAATATTAAGA
* *
50117418 TAACTTATATCATGTTAAGA
1 TAACTTATATAATATTAAGA
50117438 TAA
1 TAA
50117441 AAAATCGAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
19 16 0.43
20 21 0.57
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (20 bp):
TAACTTATATAATATTAAGA
Found at i:50117523 original size:19 final size:18
Alignment explanation
Indices: 50117499--50117589 Score: 64
Period size: 19 Copynumber: 5.1 Consensus size: 18
50117489 TTTAACTTAC
50117499 AACTTACACAATACATAAT
1 AACTTACA-AATACATAAT
*
50117518 AACTTACAACTTACATAAT
1 AACTTACAA-ATACATAAT
* * * *
50117537 -ACATA-ATA-AC-TTAC
1 AACTTACAAATACATAAT
50117551 AACTTACACAATACATAAT
1 AACTTACA-AATACATAAT
*
50117570 AACTTACAACTTACATAAT
1 AACTTACAA-ATACATAAT
50117589 A
1 A
50117590 CATAATAACT
Statistics
Matches: 54, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
14 2 0.04
15 6 0.11
16 1 0.02
17 2 0.04
18 8 0.15
19 35 0.65
ACGTcount: A:0.51, C:0.21, G:0.00, T:0.29
Consensus pattern (18 bp):
AACTTACAAATACATAAT
Found at i:50117523 original size:26 final size:26
Alignment explanation
Indices: 50117479--50117618 Score: 246
Period size: 26 Copynumber: 5.4 Consensus size: 26
50117469 CATTTGACTG
*
50117479 ACATAATACAT-TTAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
*
50117504 ACACAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
50117530 ACATAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
*
50117556 ACACAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
50117582 ACATAATACATAATAACTTACAACTT
1 ACATAATACATAATAACTTACAACTT
50117608 ACATAATACAT
1 ACATAATACAT
50117619 NNNNNNNNNN
Statistics
Matches: 109, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 10 0.09
26 99 0.91
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (26 bp):
ACATAATACATAATAACTTACAACTT
Found at i:50117615 original size:19 final size:19
Alignment explanation
Indices: 50117510--50117589 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 19
50117500 ACTTACACAA
50117510 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
* *
50117529 TACATAAT-ACATAATAACT
1 TACATAATAAC-TTACAACT
* *
50117548 TACA-ACTTAC--ACAA--
1 TACATAATAACTTACAACT
50117562 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
50117581 TACATAATA
1 TACATAATA
50117590 CATAATAACT
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
14 4 0.08
15 4 0.08
16 3 0.06
17 4 0.08
18 4 0.08
19 29 0.60
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (19 bp):
TACATAATAACTTACAACT
Found at i:50118725 original size:42 final size:42
Alignment explanation
Indices: 50118666--50118868 Score: 370
Period size: 42 Copynumber: 4.8 Consensus size: 42
50118656 NNNNNNNNNN
*
50118666 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
*
50118708 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
50118750 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
50118792 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
* *
50118834 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
50118869 GTTTGTAAAC
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 158 1.00
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
Found at i:50119920 original size:45 final size:45
Alignment explanation
Indices: 50119871--50119959 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
50119861 CACACAAATT
* * *
50119871 AAACTAAAACAAGAGGAGAATAGAAATCAATCCGTTTGAGATGCC
1 AAACTAAAAAAAGAAGAGAATAGAAATCAATCCATTTGAGATGCC
*
50119916 AAACTAAAAAAAGAAGAGAATAGAAATCGATCCATTTGAGATGC
1 AAACTAAAAAAAGAAGAGAATAGAAATCAATCCATTTGAGATGC
50119960 TAGTTGGGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.18
Consensus pattern (45 bp):
AAACTAAAAAAAGAAGAGAATAGAAATCAATCCATTTGAGATGCC
Found at i:50125951 original size:32 final size:32
Alignment explanation
Indices: 50125915--50125998 Score: 141
Period size: 32 Copynumber: 2.6 Consensus size: 32
50125905 TATATATATA
*
50125915 TATACAAATACAATTCAATTCGGCAATATAAG
1 TATACATATACAATTCAATTCGGCAATATAAG
50125947 TATACATATACAATTCAATTCGGCAATATAAG
1 TATACATATACAATTCAATTCGGCAATATAAG
* *
50125979 TATATATATACATTTCAATT
1 TATACATATACAATTCAATT
50125999 TGGCTATAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.35
Consensus pattern (32 bp):
TATACATATACAATTCAATTCGGCAATATAAG
Found at i:50128165 original size:25 final size:25
Alignment explanation
Indices: 50128025--50128167 Score: 87
Period size: 25 Copynumber: 5.8 Consensus size: 25
50128015 ACGGCTATCG
* *
50128025 GAGCTTCCCGATT-CATGGCTCTTCA-
1 GAGCTTCCCG-TTATATGGCTC-ACAT
*
50128050 GAGCTACCCGTTAT-TGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCACAT
* * * **
50128074 GAGCTTTCTGAT-TATGGCTCTTAT
1 GAGCTTCCCGTTATATGGCTCACAT
* * **
50128098 GAGCTTCCTGTTATAAGGCTCGGAT
1 GAGCTTCCCGTTATATGGCTCACAT
* * * *
50128123 AAGCCTCCTGTTACATGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCACAT
*
50128148 GAGCTTCCCATTATATGGCT
1 GAGCTTCCCGTTATATGGCT
50128168 TGAGAGAGTG
Statistics
Matches: 89, Mismatches: 25, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
23 3 0.03
24 34 0.38
25 52 0.58
ACGTcount: A:0.20, C:0.26, G:0.21, T:0.34
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCACAT
Found at i:50131124 original size:11 final size:11
Alignment explanation
Indices: 50131108--50131133 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50131098 CTCTCTCAAC
50131108 AAAAATTACAA
1 AAAAATTACAA
50131119 AAAAATTACAA
1 AAAAATTACAA
50131130 AAAA
1 AAAA
50131134 TTTTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAATTACAA
Found at i:50131155 original size:11 final size:10
Alignment explanation
Indices: 50131118--50131153 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
50131108 AAAAATTACA
**
50131118 AAAAAATTAC
1 AAAAAATTTT
50131128 AAAAAATTTT
1 AAAAAATTTT
50131138 AAAAAATTTT
1 AAAAAATTTT
50131148 AAAAAA
1 AAAAAA
50131154 ATCAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:50131171 original size:17 final size:18
Alignment explanation
Indices: 50131140--50131199 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
50131130 AAAATTTTAA
* *
50131140 AAAAT-TTTAAAAAAATC
1 AAAATATTTATAAAATTC
*
50131157 AAAATATTTTTAAAATTC
1 AAAATATTTATAAAATTC
50131175 AAAATATTTATAAAAATTTC
1 AAAATATTTAT-AAAA-TTC
50131195 AAAAT
1 AAAAT
50131200 TTATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 5 0.14
18 19 0.53
19 4 0.11
20 8 0.22
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATATTTATAAAATTC
Found at i:50131197 original size:20 final size:19
Alignment explanation
Indices: 50131129--50131199 Score: 81
Period size: 19 Copynumber: 3.7 Consensus size: 19
50131119 AAAAATTACA
* *
50131129 AAAAATTTTAAAAAATTTT
1 AAAAATTTCAAAATATTTT
**
50131148 AAAAAAATCAAAATATTTT
1 AAAAATTTCAAAATATTTT
*
50131167 TAAAA-TTCAAAATATTTAT
1 AAAAATTTCAAAATATTT-T
50131186 AAAAATTTCAAAAT
1 AAAAATTTCAAAAT
50131200 TTATATTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
18 11 0.26
19 24 0.56
20 8 0.19
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTTCAAAATATTTT
Found at i:50131229 original size:25 final size:24
Alignment explanation
Indices: 50131178--50131230 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
50131168 AAAATTCAAA
**
50131178 ATATTTATAAAAATTTCAAAATTT
1 ATATTTATAAAAATTTCAAAAAAT
50131202 ATATTTATCAAAAA-TTCTAAAAAAT
1 ATATTTAT-AAAAATTTC-AAAAAAT
50131227 ATAT
1 ATAT
50131231 AAAGAAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (24 bp):
ATATTTATAAAAATTTCAAAAAAT
Found at i:50137971 original size:143 final size:143
Alignment explanation
Indices: 50137713--50137984 Score: 508
Period size: 143 Copynumber: 1.9 Consensus size: 143
50137703 AGCCAATGCT
*
50137713 CCTAATAGCCAATAAACCTAAAGCGCGAGTGGGGCAACATAAGACAATCAAACACTAGAATCAAG
1 CCTAATAACCAATAAACCTAAAGCGCGAGTGGGGCAACATAAGACAATCAAACACTAGAATCAAG
*
50137778 TCTCCACCATTAAACATCGAAAGGGAGCTAAGGATGACTCAGCCATTACAATGGTAGACAACCAA
66 TCTCCACCATCAAACATCGAAAGGGAGCTAAGGATGACTCAGCCATTACAATGGTAGACAACCAA
50137843 TACAAAACAAGGC
131 TACAAAACAAGGC
* *
50137856 CCTAATAACCAATAAACCTAAAGCTCGAGTGGGGCAACATAAGACAATCAAACACTTGAATCAAG
1 CCTAATAACCAATAAACCTAAAGCGCGAGTGGGGCAACATAAGACAATCAAACACTAGAATCAAG
50137921 TCTCCACCATCAAACATCGAAAGGGAGCTAAGGATGACTCAGCCATTACAATGGTAGACAACCA
66 TCTCCACCATCAAACATCGAAAGGGAGCTAAGGATGACTCAGCCATTACAATGGTAGACAACCA
50137985 TCAAGGTAAA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
143 125 1.00
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.16
Consensus pattern (143 bp):
CCTAATAACCAATAAACCTAAAGCGCGAGTGGGGCAACATAAGACAATCAAACACTAGAATCAAG
TCTCCACCATCAAACATCGAAAGGGAGCTAAGGATGACTCAGCCATTACAATGGTAGACAACCAA
TACAAAACAAGGC
Found at i:50143876 original size:9 final size:9
Alignment explanation
Indices: 50143864--50143888 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
50143854 TTTTTATACT
50143864 TTTTAATAA
1 TTTTAATAA
50143873 TTTTAATAA
1 TTTTAATAA
50143882 TTTTAAT
1 TTTTAAT
50143889 TTTTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTTAATAA
Found at i:50144259 original size:13 final size:13
Alignment explanation
Indices: 50144222--50144265 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
50144212 TTGAATATAA
50144222 TAAAAATAATATAT
1 TAAAAATAATAT-T
*
50144236 TAAATATAATATT
1 TAAAAATAATATT
* *
50144249 TAAAAACAATAAT
1 TAAAAATAATATT
50144262 TAAA
1 TAAA
50144266 TCAAATAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (13 bp):
TAAAAATAATATT
Found at i:50146316 original size:24 final size:24
Alignment explanation
Indices: 50146257--50146317 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
50146247 TGTTATTTTA
* *
50146257 AATAATAATATATTAAAATTATAT
1 AATAATAACATATTAAAATGATAT
**
50146281 AA-AATTTTCATATTAAAATGATAT
1 AATAA-TAACATATTAAAATGATAT
50146305 AATAATAACATAT
1 AATAATAACATAT
50146318 AATATATTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
23 2 0.07
24 25 0.86
25 2 0.07
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (24 bp):
AATAATAACATATTAAAATGATAT
Found at i:50150769 original size:44 final size:44
Alignment explanation
Indices: 50150720--50151680 Score: 514
Period size: 44 Copynumber: 22.2 Consensus size: 44
50150710 TAACTTCGGA
** * *
50150720 GAGATAAGATCCTTTGTTTTAATCTGCTCCACTGTAATATCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * * * * * *
50150764 GAGATAAGA-CC-TGA-TACGATCTTCTCTACTGTAA-CTTTAGA
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATC-TCAGG
* * *
50150805 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * * **
50150849 GAGATAGGATTACTAT-CTTCAATC-GTCTCTGCTGTAATCTCAGG
1 GAGATAAGA-TCCTTTACTTCAATCTG-CTCCACTGTAATCTCAGG
* * * * * ** *
50150893 AAGATAAGAT--TTGAC-ACGATCTACTATACTGTAA-CTTCAGA
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATC-TCAGG
* * **
50150934 GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * * **
50150978 GAGATAGGATTACTAT-CTTCAATC-GTCTCTGCTGTAATCTCAGG
1 GAGATAAGA-TCCTTTACTTCAATCTG-CTCCACTGTAATCTCAGG
* * * * * ** *
50151022 AAGATAAGAT--TTGAC-ACGATCTACTATACTGTAA-CTTCAGA
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATC-TCAGG
* * **
50151063 GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* ** * *
50151107 GAGATATGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * * * * * * *
50151151 GAGATAAGAT-C-TGAC-ACGATCTACTCTACTATAA-CTTTAGA
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATC-TCAGG
* * **
50151192 GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* ** * *
50151236 GAGATATGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* ** * *
50151280 GAGATATGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * * * *
50151324 GAGATAAGATTAC-TAACTTCAATCTCCTCCGCTGTAATCTCAAG
1 GAGATAAGA-TCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * * * * *
50151368 GAGATAAGAT-C-TGAC-ACGATCTACTCTACTGTAA-CTTCAGA
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATC-TCAGG
* * * **
50151409 GAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * * *
50151453 GAGATAAGATTAC-TAACTTCAATCTGCTCCGCTGTAATCTCAAG
1 GAGATAAGA-TCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * * * * * * *
50151497 GAGATAAGAT-C-TGAC-ACGATCTACTCTACTATAA-CTTTAGA
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATC-TCAGG
* * *
50151538 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGG
1 GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
* * *
50151582 GAGATAGGAT--TACTAGCTTCAATCTGCTCCGCTGTAATCTCAGG
1 GAGATAAGATCCT-TTA-CTTCAATCTGCTCCACTGTAATCTCAGG
** *
50151626 GAGATAAGAT-CTAAAATT-CTTCGGTCTGTTCCACTGTAATCTCAGG
1 GAGATAAGATCCT----TTACTTCAATCTGCTCCACTGTAATCTCAGG
50151672 GAGATAAGA
1 GAGATAAGA
50151681 CTTGACACGA
Statistics
Matches: 696, Mismatches: 175, Indels: 90
0.72 0.18 0.09
Matches are distributed among these distances:
40 5 0.01
41 159 0.23
42 20 0.03
43 23 0.03
44 436 0.63
45 18 0.03
46 33 0.05
48 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
GAGATAAGATCCTTTACTTCAATCTGCTCCACTGTAATCTCAGG
Found at i:50150892 original size:129 final size:129
Alignment explanation
Indices: 50150740--50151285 Score: 853
Period size: 129 Copynumber: 4.2 Consensus size: 129
50150730 CCTTTGTTTT
* * * * * * *
50150740 AATCTGCTCCACTGTAATATCAGGGAGATAAGACCTGATACGATCTTCTCTACTGTAACTTTAGA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTATACTGTAACTTCAGA
* *
50150805 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTC
66 GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
* * *
50150869 AATC-GTCTCTGCTGTAATCTCAGGAAGATAAGATTTGACACGATCTACTATACTGTAACTTCAG
1 AATCTG-CTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTATACTGTAACTTCAG
*
50150933 AGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTC
65 AGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
* * *
50150998 AATC-GTCTCTGCTGTAATCTCAGGAAGATAAGATTTGACACGATCTACTATACTGTAACTTCAG
1 AATCTG-CTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTATACTGTAACTTCAG
* *
50151062 AGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATATGATTATTAACTTC
65 AGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
* * *
50151127 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTACTATAACTTTAGA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTATACTGTAACTTCAGA
* *
50151192 GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATATGATTATTAACTTC
66 GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
50151256 AATCTGCTCCGCTGTAATCTCAGGGAGATA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATA
50151286 TGATTATTAA
Statistics
Matches: 395, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
128 1 0.00
129 393 0.99
130 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (129 bp):
AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTATACTGTAACTTCAGA
GAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTC
Found at i:50151098 original size:85 final size:86
Alignment explanation
Indices: 50150660--50151463 Score: 315
Period size: 85 Copynumber: 9.3 Consensus size: 86
50150650 GCTTCAATGT
* * * * ** * * *
50150660 ACTCCACTGTAACCACAGGGAGGTAAAACCTGAT-GCGATCTACGCTACTGTAACTTCGGAGAGA
1 ACTCCACTGTAATCTCAGGGAGATAAGATTTGATCACGATCTACTCTACTGTAACTTCAGAGAGA
* *
50150724 TAAGATCCTTTGTTTTAATCT
66 TAAGATCCTTTATTTTAATCC
* * ** * *
50150745 GCTCCACTGTAATATCAGGGAGATAAGACCTGAT-ACGATCTTCTCTACTGTAACTTTAGAGAGA
1 ACTCCACTGTAATCTCAGGGAGATAAGATTTGATCACGATCTACTCTACTGTAACTTCAGAGAGA
50150809 TAAGATCCTTTATTTTAATCC
66 TAAGATCCTTTATTTTAATCC
* * * * *
50150830 GCTCCACTGTAATCTCAGGGAGATAGGATTACT-ATCTTCAATCGT-CTCTGCTGTAA-TCTCAG
1 ACTCCACTGTAATCTCAGGGAGATAAGATT--TGATC-ACGATC-TACTCTACTGTAACT-TCAG
* **** *
50150892 -GAAGATAAGAT--TTGA-CACGATCT
61 AG-AGATAAGATCCTTTATTTTAATCC
** * * **** * * *
50150915 ACTATACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAA-TCTCAGG
1 ACTCCACTGTAATC-TCAGGGAGATAAGAT--TTGATCACGATCTACTCTACTGTAACT-TCAGA
* * * *
50150978 GAGATAGGAT--TACTATCTTCAATCG
62 GAGATAAGATCCT-TTAT-TTTAATCC
* ** * *
50151003 TCTCTGCTGTAATCTCAGGAAGATAAGATTTGA-CACGATCTACTATACTGTAACTTCAGAGAGA
1 ACTCCACTGTAATCTCAGGGAGATAAGATTTGATCACGATCTACTCTACTGTAACTTCAGAGAGA
50151067 TAAGATCCTTTATTTTAATCC
66 TAAGATCCTTTATTTTAATCC
* * * * * * ** *
50151088 ACTCCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTGCTCCGCTGTAA-TCTCAGGG
1 ACTCCACTGTAATCTCAGGGAGATAAGATT-TGATC-ACGATCTACTCTACTGTAACT-TCAGAG
* **** *
50151152 AGATAAGAT-C-TGA-CACGATCT
63 AGATAAGATCCTTTATTTTAATCC
* * * * * **** * * *
50151173 ACTCTACTATAA-CTTTAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAA-TCTCAGG
1 ACTCCACTGTAATC-TCAGGGAGATAAGAT--TTGATCACGATCTACTCTACTGTAACT-TCAGA
* ** * * * *
50151236 GAGATATGATTATTAACTTCAATCT
62 GAGATAAGATCCTTTATTTTAATCC
* * * * * * * * ** *
50151261 GCTCCGCTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTGCTCCGCTGTAA-TCTCAGGG
1 ACTCCACTGTAATCTCAGGGAGATAAGATT-TGATC-ACGATCTACTCTACTGTAACT-TCAGAG
* * * *
50151325 AGATAAGATTAC-TAACTTCAATCTC
63 AGATAAGA-TCCTTTATTTTAATC-C
* * *
50151350 -CTCCGCTGTAATCTCAAGGAGATAAGATCTGA-CACGATCTACTCTACTGTAACTTCAGAGAGA
1 ACTCCACTGTAATCTCAGGGAGATAAGATTTGATCACGATCTACTCTACTGTAACTTCAGAGAGA
*
50151413 TAAGATCCTTCATTTTAATCC
66 TAAGATCCTTTATTTTAATCC
50151434 ACTCCACTGTAATCTCAGGGAGATAAGATT
1 ACTCCACTGTAATCTCAGGGAGATAAGATT
50151464 ACTAACTTCA
Statistics
Matches: 549, Mismatches: 132, Indels: 76
0.73 0.17 0.10
Matches are distributed among these distances:
84 5 0.01
85 327 0.60
86 26 0.05
87 16 0.03
88 171 0.31
89 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (86 bp):
ACTCCACTGTAATCTCAGGGAGATAAGATTTGATCACGATCTACTCTACTGTAACTTCAGAGAGA
TAAGATCCTTTATTTTAATCC
Found at i:50151155 original size:173 final size:172
Alignment explanation
Indices: 50150960--50151506 Score: 651
Period size: 173 Copynumber: 3.2 Consensus size: 172
50150950 TTTTAATCCA
* *
50150960 CTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCGT-CTCTGCTGTAATCTCAGGAA
1 CTCCGCTGTAATCTCAGGGAGATAAGATTACTA-CTTCAATC-TACTCTGCTGTAATCTCAGGAA
* *
50151024 GATAAGATTTGACACGATCTACTATACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCA
64 GATAAGATTTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAATTTTAATCCA
50151089 CTCCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTG
129 CTCCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTG
* * * * *
50151133 CTCCGCTGTAATCTCAGGGAGATAAGA-T-CTGAC-ACGATCTACTCTACTATAA-CTTTA-GAG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTACT-ACTTCAATCTACTCTGCTGTAATC-TCAGGA-
* **** * * * * ** * *
50151193 AGATAAGATCCTTTATTTTAATCCACTCCACTGTAA-TCTCAGGGAGATATGATTATTAACTTCA
63 AGATAAGAT--TTGA-CACGATCTACTCTACTGTAACT-TCAGAGAGATAAGATCCTTAATTTTA
** *
50151257 ATCTGCTCCGCTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTG
124 ATCCACTCCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTG
* *
50151306 CTCCGCTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTCCTCCGCTGTAATCTCAAGG-A
1 CTCCGCTGTAATCTCAGGGAGATAAGATTACT-ACTTCAATCTACTCTGCTGTAATCTC-AGGAA
* *
50151370 GATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCA
64 GATAAGATTTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAATTTTAATCCA
* *
50151435 CTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTG
129 CTCCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTG
*
50151479 CTCCGCTGTAATCTCAAGGAGATAAGAT
1 CTCCGCTGTAATCTCAGGGAGATAAGAT
50151507 CTGACACGAT
Statistics
Matches: 305, Mismatches: 54, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
169 4 0.01
170 24 0.08
171 3 0.01
172 6 0.02
173 234 0.77
174 4 0.01
175 4 0.01
176 23 0.08
177 2 0.01
178 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (172 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATTACTACTTCAATCTACTCTGCTGTAATCTCAGGAAGA
TAAGATTTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAATTTTAATCCACT
CCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTG
Found at i:50151358 original size:217 final size:217
Alignment explanation
Indices: 50151089--50151502 Score: 729
Period size: 217 Copynumber: 1.9 Consensus size: 217
50151079 TTTTAATCCA
* * * *
50151089 CTCCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTCCTCCGCTGTAATCTCAAGGAG
* *
50151154 ATAAGATCTGACACGATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCAC
66 ATAAGATCTGACACGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTCATTTTAATCCAC
* * *
50151219 TCCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
131 TCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGAGA
50151284 TATGATTATTAACTTCAATCTG
196 TATGATTATTAACTTCAATCTG
*
50151306 CTCCGCTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTCCTCCGCTGTAATCTCAAGGAG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTCCTCCGCTGTAATCTCAAGGAG
*
50151371 ATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCAC
66 ATAAGATCTGACACGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTCATTTTAATCCAC
50151436 TCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGAGA
131 TCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGAGA
50151501 TA
196 TA
50151503 AGATCTGACA
Statistics
Matches: 186, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
217 186 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (217 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTCCTCCGCTGTAATCTCAAGGAG
ATAAGATCTGACACGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTCATTTTAATCCAC
TCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGAGA
TATGATTATTAACTTCAATCTG
Found at i:50151388 original size:346 final size:347
Alignment explanation
Indices: 50150960--50151680 Score: 1207
Period size: 346 Copynumber: 2.1 Consensus size: 347
50150950 TTTTAATCCA
* * *
50150960 CTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCGTCTCTGCTGTAATCTCAGGAAG
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCGTCTCCGCTGTAATCTCAGGAAG
* *
50151025 ATAAGATTTGACACGATCTACTATACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCAC
66 ATAAGATCTGACACGATCTACTATACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCAC
* * *
50151090 TCCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGA
131 TCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGAGA
50151155 TAAGATCTGACACGATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACT
196 TAAGATCTGACACGATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACT
* *
50151220 CCACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGAT
261 CCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGAT
* *
50151285 ATGAT-TATTAA-CTTCAATCTG
326 AAGATCTA-AAATCTTCAATCTG
*
50151306 CTCCGCTGTAATCTCAGGGAGATAAGATTACTAACTTCAATC-TCCTCCGCTGTAATCTCAAGG-
1 CTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCGT-CTCCGCTGTAATCTC-AGGA
*
50151369 AGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCC
64 AGATAAGATCTGACACGATCTACTATACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCC
50151434 ACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGA
129 ACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGA
*
50151499 GATAAGATCTGACACGATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCG
194 GATAAGATCTGACACGATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCA
*
50151564 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
259 CTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAG
**
50151629 ATAAGATCTAAAATTCTTCGGTCTG
324 ATAAGATCTAAAA-TCTTCAATCTG
*
50151654 TTCCACTGTAATCTCAGGGAGATAAGA
1 CTCCACTGTAATCTCAGGGAGATAAGA
50151681 CTTGACACGA
Statistics
Matches: 350, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
345 1 0.00
346 311 0.89
347 5 0.01
348 33 0.09
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (347 bp):
CTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCGTCTCCGCTGTAATCTCAGGAAG
ATAAGATCTGACACGATCTACTATACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCAC
TCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGAGA
TAAGATCTGACACGATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACT
CCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGAT
AAGATCTAAAATCTTCAATCTG
Found at i:50151400 original size:129 final size:129
Alignment explanation
Indices: 50151300--50151637 Score: 577
Period size: 129 Copynumber: 2.6 Consensus size: 129
50151290 TATTAACTTC
* * *
50151300 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTCCTCCGCTGTAATCTC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
*
50151365 AAGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTT
66 AAGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAATTTT
*
50151429 AATCCACTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
* * *
50151494 AAGGAGATAAGATCTGACACGATCTACTCTACTATAACTTTAGAGAGATAAGATCCTTTATTTT
66 AAGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAATTTT
* *
50151558 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
*
50151623 AGGGAGATAAGATCT
66 AAGGAGATAAGATCT
50151638 AAAATTCTTC
Statistics
Matches: 198, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 198 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (129 bp):
AATCCGCTCCACTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTGCTCCGCTGTAATCTC
AAGGAGATAAGATCTGACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTAATTTT
Found at i:50151574 original size:173 final size:173
Alignment explanation
Indices: 50151049--50151727 Score: 748
Period size: 173 Copynumber: 3.9 Consensus size: 173
50151039 GATCTACTAT
* * *
50151049 ACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAGATA
1 ACTGTAATC-TCAGAGAGATAAGATCCTTCACTTCAATCCACTCCACTGTAATCTCAGGGAGATA
*
50151113 TGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCT
65 AGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCT
50151178 ACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACTCC
130 ACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACTCC
* * ** * ** * *
50151222 ACTGTAATCTCAGGGAGATATGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAT
1 ACTGTAATCTCAGAGAGATAAGATCCTTCACTTCAATCCACTCCACTGTAATCTCAGGGAGATAA
* * * *
50151287 GATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTACTAACTTCAATCTCCT
66 GATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA-T-CTGAC-ACGATCTACT
** * ** * **** * *
50151352 CCGCTGTAATCTCAAG-GAGATAAGAT-C-TGA-CACGATCTACTCT
128 CTACTATAA-CTTTAGAGAGATAAGATCCTTTATTTTAATCCACTCC
* *
50151395 ACTGTAA-CTTCAGAGAGATAAGATCCTTCATTTTAATCCACTCCACTGTAATCTCAGGGAGATA
1 ACTGTAATC-TCAGAGAGATAAGATCCTTCACTTCAATCCACTCCACTGTAATCTCAGGGAGATA
* *
50151459 AGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAAGGAGATAAGATCTGACACGATCTACTCT
65 AGATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCT
*
50151524 ACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCC
130 ACTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACTCC
* * * ** *
50151568 ACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAT
1 ACTGTAATCTCAGAGAGATAAGATCCTTC-A-CTTCAATCCACTCCACTGTAATCTCAGGGAGAT
* ** * *
50151631 AAGATCTA-AAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA-CTTGACACGATCT
64 AAGAT-TATTAA--CTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC-TGACACGATCT
* * *
50151694 ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTT
125 ACTCTACTATAACTTTAGAGAGATAAGATCCTTT
50151728 CTTCCGCTCC
Statistics
Matches: 416, Mismatches: 73, Indels: 32
0.80 0.14 0.06
Matches are distributed among these distances:
169 4 0.01
170 23 0.06
171 7 0.02
172 5 0.01
173 263 0.63
174 8 0.02
175 79 0.19
176 23 0.06
177 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (173 bp):
ACTGTAATCTCAGAGAGATAAGATCCTTCACTTCAATCCACTCCACTGTAATCTCAGGGAGATAA
GATTATTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGACACGATCTACTCTA
CTATAACTTTAGAGAGATAAGATCCTTTATTTTAATCCACTCC
Found at i:50151837 original size:87 final size:88
Alignment explanation
Indices: 50151735--50151894 Score: 207
Period size: 88 Copynumber: 1.8 Consensus size: 88
50151725 TTTCTTCCGC
* * * ** *
50151735 TCCACTGCAACCGATGGAG-GCAAGGCTT-TATTTTCGATCTGCTTCGTTGTTAACGCAAGAAGG
1 TCCACCGCAACCGATGGAGAG-AAAGCTTGTATCTTCGATCTGCTTCACTGTCAACGCAAGAAGG
50151798 CAAGATCTGCTATCTTCAACCAGT
65 CAAGATCTGCTATCTTCAACCAGT
* * * *
50151822 TCCACCGCAACCGATGGAGAGAAAGTTTGTATCTTCGATCTGCTTCACTGTCAAGGCAGGACGGC
1 TCCACCGCAACCGATGGAGAGAAAGCTTGTATCTTCGATCTGCTTCACTGTCAACGCAAGAAGGC
50151887 AAGATCTG
66 AAGATCTG
50151895 TTGTCTTTGA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
87 23 0.38
88 38 0.62
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (88 bp):
TCCACCGCAACCGATGGAGAGAAAGCTTGTATCTTCGATCTGCTTCACTGTCAACGCAAGAAGGC
AAGATCTGCTATCTTCAACCAGT
Found at i:50153157 original size:8 final size:8
Alignment explanation
Indices: 50153146--50153175 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
50153136 CCATTTTTAC
50153146 TTTTTCAT
1 TTTTTCAT
50153154 TTTTTCATT
1 TTTTTCA-T
50153163 TTTTTCAT
1 TTTTTCAT
50153171 TTTTT
1 TTTTT
50153176 TCATCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTCAT
Found at i:50153165 original size:9 final size:9
Alignment explanation
Indices: 50153146--50153179 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
50153136 CCATTTTTAC
50153146 TTTTTCA-T
1 TTTTTCATT
50153154 TTTTTCATT
1 TTTTTCATT
50153163 TTTTTCATT
1 TTTTTCATT
50153172 TTTTTCAT
1 TTTTTCAT
50153180 CTCTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.28
9 18 0.72
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTCATT
Found at i:50155662 original size:14 final size:15
Alignment explanation
Indices: 50155639--50155679 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
50155629 TTTCGGTATA
50155639 TCTA-TTTTCTTT-T
1 TCTATTTTTCTTTCT
50155652 TCTATTTTTCTTTCT
1 TCTATTTTTCTTTCT
50155667 T-TATTTTT-TTTCT
1 TCTATTTTTCTTTCT
50155680 CTTTTCGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 9 0.35
14 15 0.58
15 2 0.08
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (15 bp):
TCTATTTTTCTTTCT
Found at i:50155678 original size:13 final size:13
Alignment explanation
Indices: 50155639--50155681 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
50155629 TTTCGGTATA
50155639 TCTATTTTCTTTT-
1 TCTATTTT-TTTTC
50155652 TCTATTTTTCTTTC
1 TCTATTTTT-TTTC
*
50155666 TTTATTTTTTTTC
1 TCTATTTTTTTTC
50155679 TCT
1 TCT
50155682 TTTCGAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
12 1 0.04
13 17 0.65
14 8 0.31
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (13 bp):
TCTATTTTTTTTC
Found at i:50156571 original size:3 final size:3
Alignment explanation
Indices: 50156563--50156594 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
50156553 ATGTTTTCAA
50156563 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
50156595 ACTCTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:50156678 original size:5 final size:5
Alignment explanation
Indices: 50156670--50156695 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
50156660 TGTGTGTACA
50156670 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
50156696 TGTGTGTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:50158278 original size:37 final size:37
Alignment explanation
Indices: 50158213--50158321 Score: 177
Period size: 37 Copynumber: 3.0 Consensus size: 37
50158203 TACGTATGAT
* *
50158213 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
50158248 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
50158285 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
50158322 TAAAGCTATC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
35 10 0.14
36 3 0.04
37 56 0.81
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:50158338 original size:46 final size:46
Alignment explanation
Indices: 50158285--50158491 Score: 220
Period size: 46 Copynumber: 4.6 Consensus size: 46
50158275 TAAGTGTAGC
*
50158285 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
*
50158331 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAA-CTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAG-CTAAAGCTAT
50158383 CACTTATCACTTTGTCACTTGATCAGATAA--GT-G-T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
* *
50158419 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
* *
50158465 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
50158492 AGTACTCAAA
Statistics
Matches: 137, Mismatches: 6, Indels: 36
0.77 0.03 0.20
Matches are distributed among these distances:
36 29 0.21
38 2 0.01
39 2 0.01
40 1 0.01
42 2 0.01
43 1 0.01
44 2 0.01
46 54 0.39
49 2 0.01
52 38 0.28
53 4 0.03
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
Found at i:50158364 original size:52 final size:52
Alignment explanation
Indices: 50158285--50158403 Score: 177
Period size: 52 Copynumber: 2.2 Consensus size: 52
50158275 TAAGTGTAGC
* * *
50158285 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG-CTAAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAA-CTATCACTTAT
50158338 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTATCACTTAT
50158390 CACTTTGTCACTTG
1 CACTTT-TCACTTG
50158404 ATCAGATAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
52 41 0.67
53 20 0.33
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTATCACTTAT
Found at i:50158425 original size:36 final size:36
Alignment explanation
Indices: 50158383--50158455 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
50158373 CCGAAACTAT
50158383 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
*
50158419 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
50158455 C
1 C
50158456 TAAAGCTACC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:50158474 original size:82 final size:81
Alignment explanation
Indices: 50158338--50158491 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 81
50158328 TATCACTTAT
* * *
50158338 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTATCACTTATCACTTTGTCACTT
1 CACTTATCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTACCACTTATCACTTTATCACTT
50158403 GATCAGATAAGTGTAG
66 GATCAGATAAGTGTAG
* * *
50158419 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG-CTAAAGCTACCACTTATCACTTTATCTC
1 CACTTATCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAA-CTACCACTTATCACTTTATCAC
50158483 TTGATCAGA
64 TTGATCAGA
50158492 AGTACTCAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 13 0.20
82 52 0.80
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.36
Consensus pattern (81 bp):
CACTTATCACTTGTCACTTGATCAGATAAGTGTAGCCGAAACTACCACTTATCACTTTATCACTT
GATCAGATAAGTGTAG
Found at i:50163442 original size:19 final size:21
Alignment explanation
Indices: 50163404--50163443 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
50163394 TTAAAAAATA
50163404 TATTTAAATAAAATAATAATGC
1 TATTTAAATAAAAT-ATAATGC
50163426 TATTTAAA-AAAAT-TAATG
1 TATTTAAATAAAATATAATG
50163444 TAGCCAATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
21 5 0.28
22 8 0.44
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (21 bp):
TATTTAAATAAAATATAATGC
Found at i:50188418 original size:30 final size:28
Alignment explanation
Indices: 50188384--50188440 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 28
50188374 TAAATTAGTG
50188384 AAAAG-TGAAGGGGTCAAATAATAAAAATTC
1 AAAAGTTG-AGGGGTCAAAT--TAAAAATTC
*
50188414 AAAAGTTGAGGGGTTAAATTAAAAATT
1 AAAAGTTGAGGGGTCAAATTAAAAATT
50188441 AGAAAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 8 0.32
30 15 0.60
31 2 0.08
ACGTcount: A:0.51, C:0.04, G:0.21, T:0.25
Consensus pattern (28 bp):
AAAAGTTGAGGGGTCAAATTAAAAATTC
Found at i:50188454 original size:29 final size:29
Alignment explanation
Indices: 50188391--50188454 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
50188381 GTGAAAAGTG
*
50188391 AAGGGGTCAAATAATAAAAATTCAAAAGTT
1 AAGGGGTCAAAT-ATAAAAATTCAAAAATT
* * *
50188421 GAGGGGTTAAAT-TAAAAATTAGAAAAATT
1 AAGGGGTCAAATATAAAAATT-CAAAAATT
50188450 AAGGG
1 AAGGG
50188455 AAAAATTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 8 0.29
29 10 0.36
30 10 0.36
ACGTcount: A:0.52, C:0.03, G:0.22, T:0.23
Consensus pattern (29 bp):
AAGGGGTCAAATATAAAAATTCAAAAATT
Found at i:50190276 original size:14 final size:14
Alignment explanation
Indices: 50190257--50190287 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
50190247 AATAGGGGAG
50190257 ACTTTAAAGAATAA
1 ACTTTAAAGAATAA
50190271 ACTTTAAAGAATAA
1 ACTTTAAAGAATAA
50190285 ACT
1 ACT
50190288 GTACTATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (14 bp):
ACTTTAAAGAATAA
Found at i:50191181 original size:46 final size:46
Alignment explanation
Indices: 50191107--50191405 Score: 516
Period size: 46 Copynumber: 6.6 Consensus size: 46
50191097 TTTGAATACT
*
50191107 TCTGATC-AGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* * *
50191152 TCTAATCAAGTGACAAAATGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
50191198 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
50191244 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
50191290 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
50191336 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
50191381 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
50191406 ATCATACGTA
Statistics
Matches: 246, Mismatches: 7, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
43 12 0.05
44 5 0.02
45 25 0.10
46 204 0.83
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:50193308 original size:23 final size:24
Alignment explanation
Indices: 50193276--50193326 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
50193266 TTCGTAGGTC
**
50193276 AAATAAATTATGTTAA-AAATACT
1 AAATAAATTATACTAATAAATACT
*
50193299 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
50193323 AAAT
1 AAAT
50193327 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Done.