Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 161 of 313
Found at i:50671262 original size:109 final size:109
Alignment explanation
Indices: 50671135--50671449 Score: 603
Period size: 109 Copynumber: 2.9 Consensus size: 109
50671125 TGGTCAAATC
*
50671135 GAAAAATCGAAACCCAGCGCATTAGGGCACGTTTCCTTAAATTTCCAAACGCAAAATATTATCTT
1 GAAAAATCGACACCCAGCGCATTAGGGCACGTTTCCTTAAATTTCCAAACGCAAAATATTATCTT
50671200 ACTTCGAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGA
66 ACTTCGAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGA
*
50671244 GAAAAATCGACACCCAGCGCATTAGGGCACGTTTCCTTAAATTTCCAAACCCAAAATATTATCTT
1 GAAAAATCGACACCCAGCGCATTAGGGCACGTTTCCTTAAATTTCCAAACGCAAAATATTATCTT
*
50671309 ACTTTGAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGA
66 ACTTCGAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGA
50671353 GAAAAATCGACACCCAGCGCATTAGGGCACGTTTCCTTAAATTTCCAAACGCAAAATATTATCTT
1 GAAAAATCGACACCCAGCGCATTAGGGCACGTTTCCTTAAATTTCCAAACGCAAAATATTATCTT
50671418 ACTTCGAAATTTTTAAAAGGATATTTAGCCAT
66 ACTTCGAAATTTTTAAAAGGATATTTAGCCAT
50671450 NNNNNNNNNN
Statistics
Matches: 201, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 201 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.31
Consensus pattern (109 bp):
GAAAAATCGACACCCAGCGCATTAGGGCACGTTTCCTTAAATTTCCAAACGCAAAATATTATCTT
ACTTCGAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAATGA
Found at i:50673063 original size:19 final size:18
Alignment explanation
Indices: 50673022--50673064 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
50673012 ACGTCTTTTT
50673022 TGCATTCATTTCATGCATC
1 TGCATTCATTTCATGCA-C
50673041 TGCATTGCATTTCATTGCA-
1 TGCATT-CATTTCA-TGCAC
50673060 TGCAT
1 TGCAT
50673065 CAAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (18 bp):
TGCATTCATTTCATGCAC
Found at i:50674906 original size:9 final size:9
Alignment explanation
Indices: 50674890--50674939 Score: 75
Period size: 9 Copynumber: 5.6 Consensus size: 9
50674880 TCTCATGAGT
50674890 TCAAAAAAA
1 TCAAAAAAA
*
50674899 TAAAAAAAAA
1 T-CAAAAAAA
50674909 TCAAAAAAA
1 TCAAAAAAA
50674918 TC-AAAAAA
1 TCAAAAAAA
50674926 TCAAAAAAA
1 TCAAAAAAA
50674935 TCAAA
1 TCAAA
50674940 GTCAAAATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
8 8 0.22
9 21 0.57
10 8 0.22
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAAAA
Found at i:50674923 original size:17 final size:17
Alignment explanation
Indices: 50674903--50674939 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
50674893 AAAAAATAAA
50674903 AAAAAATCAAAAAAATC
1 AAAAAATCAAAAAAATC
50674920 AAAAAATCAAAAAAATC
1 AAAAAATCAAAAAAATC
50674937 AAA
1 AAA
50674940 GTCAAAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAAATCAAAAAAATC
Found at i:50675929 original size:21 final size:21
Alignment explanation
Indices: 50675903--50675949 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
50675893 GCTCAAATGT
50675903 TGATCAGAATGGGGCATGAAG
1 TGATCAGAATGGGGCATGAAG
* *
50675924 TGATCAGATTGGGGCATGATG
1 TGATCAGAATGGGGCATGAAG
50675945 TGATC
1 TGATC
50675950 TTGTTATACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.11, G:0.36, T:0.26
Consensus pattern (21 bp):
TGATCAGAATGGGGCATGAAG
Found at i:50677070 original size:46 final size:46
Alignment explanation
Indices: 50677003--50677586 Score: 952
Period size: 46 Copynumber: 12.7 Consensus size: 46
50676993 TATCAATGAG
*
50677003 GATAGCAGATCTTATGTTCCTGTATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50677049 GATAGCGGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50677095 GATAGCAGATCTTATCTTCCAGTATTTGGCAGCGGAGGAGATCAAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50677141 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCAGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * * *
50677187 GATAGCAGATCTTATCTTCCTATATGTGGCAGTGGAGGAGATCAAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50677233 GATAGCCGATCTTATCTTCCTGTATTTGGCAGCCGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50677279 GATAGCAGATCTTATCTTCCTGTATTTAGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50677325 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCAGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * *
50677371 GATAGAAGATCTTGTCTTCCTGTATTTGGCAGCGGAGAAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50677417 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGAAAGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50677463 GATAGCAGATATTATCTTCCTGTATTTAGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50677509 GATAGCAGATCTTATCTTCCTGTACTTGGCAGCGGAGGAGATCGAG
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50677555 GATAGCAGATCTTGTCTTCCTGTAATTGGCAG
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAG
50677587 TAGAGGGATT
Statistics
Matches: 495, Mismatches: 43, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 495 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (46 bp):
GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
Found at i:50677753 original size:132 final size:132
Alignment explanation
Indices: 50677598--50678956 Score: 2196
Period size: 132 Copynumber: 10.3 Consensus size: 132
50677588 AGAGGGATTT
* * * * *
50677598 AAGATTACAGATTATGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTAAATCTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
*
50677663 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
50677728 CG
131 CG
* * * * *
50677730 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAAATCGAATATAGTAAATATTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
* * * * *
50677795 CCAATACAGTGGAGAAGCAGATTTAAGTCGTTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
**
50677860 TA
131 CG
* *
50677862 AAGATTGCAGATTCTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
* *
50677927 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
*
50677992 TG
131 CG
* * * * * *
50677994 AAGATTGCAGATTCTGTTACCCTAATCAGTAGTGGAGTAGATCAAAGATAGTGAATTTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
* * *
50678059 CCAATACAGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
*
50678124 TG
131 CG
* *
50678126 AAGATTGCAGATTCTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
50678191 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
50678256 CG
131 CG
* *
50678258 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGACGGTGAATCTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
50678323 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
50678388 CG
131 CG
* *
50678390 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGACGGTGAATCTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
50678455 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
50678520 CG
131 CG
* *
50678522 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGAAGCAGATCGAAGACGGTGAATCTTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
50678587 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
50678652 CG
131 CG
* * * * *
50678654 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAAATCGAATATAGTAAATATTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
* *
50678719 CCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGTGGAATAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
50678784 CG
131 CG
* * * * *
50678786 AAAATTACAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATGGTAAATATTATCTTC
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
* *
50678851 CCAATACAGTGGAGAAGCAGATTTAAGCCGTTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
66 CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
50678916 CG
131 CG
* * *
50678918 AAGATTGTAAATTCTGTCACCCTAAGCAGTAGTAGAGCA
1 AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCA
50678957 AATCAACAAT
Statistics
Matches: 1165, Mismatches: 62, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 1165 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (132 bp):
AAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTC
CCAATACAGTGAAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAATAGGT
CG
Found at i:50677892 original size:44 final size:43
Alignment explanation
Indices: 50677831--50678174 Score: 180
Period size: 44 Copynumber: 7.8 Consensus size: 43
50677821 GTCGTTAGTC
* * *
50677831 CTATCACCTTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATT
1 CTATCACCCTAATCAGTAGTGGAGTAGATTAAAGATTG-AGATT
* * * * * *
50677875 CTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAAT
1 CTATCACCCTAATCAGTAGTGGAGTAGATTAAAGATTGAGATT
* * * * * * *
50677918 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-AG-TC
1 C-TATC-ACCCTAAT-CAGTAGTGGAGTAGATTAAAG--ATTGAGATT
* * *
50677963 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAATCAGTAGTGGAGTAGATTAAAGATTG-AGATT
* * *
50678007 CTGTTACCCTAATCAGTAGTGGAGTAGATCAAAGATAGTGA-ATT
1 CTATCACCCTAATCAGTAGTGGAGTAGATTAAAGAT--TGAGATT
* * * * * * * * *
50678051 TTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT-TG-TC
1 CTATC-ACCCTAAT-CAGTAGTGGAGTAGATTAAAG--ATTGAGATT
* * *
50678095 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAATCAGTAGTGGAGTAGATTAAAGATTG-AGATT
* * *
50678139 CTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGAT
1 CTATCACCCTAATCAGTAGTGGAGTAGATTAAAGAT
50678175 GGTGAATCTT
Statistics
Matches: 216, Mismatches: 64, Indels: 40
0.68 0.20 0.12
Matches are distributed among these distances:
41 6 0.03
43 43 0.20
44 120 0.56
45 40 0.19
46 3 0.01
47 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (43 bp):
CTATCACCCTAATCAGTAGTGGAGTAGATTAAAGATTGAGATT
Found at i:50682567 original size:19 final size:18
Alignment explanation
Indices: 50682526--50682568 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
50682516 CGTCTCTTTT
50682526 TGCATTCATTTCATGCATC
1 TGCATTCATTTCATGCA-C
50682545 TGCATTGCATTTCATTGCA-
1 TGCATT-CATTTCA-TGCAC
50682564 TGCAT
1 TGCAT
50682569 CAAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (18 bp):
TGCATTCATTTCATGCAC
Found at i:50684410 original size:9 final size:9
Alignment explanation
Indices: 50684397--50684452 Score: 96
Period size: 9 Copynumber: 6.3 Consensus size: 9
50684387 CATGAGTTCA
*
50684397 AAAAAAATA
1 AAAAAAATC
50684406 AAAAAAATC
1 AAAAAAATC
50684415 AAAAAAATC
1 AAAAAAATC
50684424 AAAAAAATC
1 AAAAAAATC
50684433 -AAAAAATC
1 AAAAAAATC
50684441 AAAAAAATC
1 AAAAAAATC
50684450 AAA
1 AAA
50684453 GTCAAAATAG
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
8 8 0.18
9 37 0.82
ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAAATC
Found at i:50684420 original size:17 final size:17
Alignment explanation
Indices: 50684398--50684452 Score: 92
Period size: 17 Copynumber: 3.2 Consensus size: 17
50684388 ATGAGTTCAA
*
50684398 AAAAAATAAAAAAAATC
1 AAAAAATCAAAAAAATC
50684415 AAAAAAATCAAAAAAATC
1 -AAAAAATCAAAAAAATC
50684433 AAAAAATCAAAAAAATC
1 AAAAAATCAAAAAAATC
50684450 AAA
1 AAA
50684453 GTCAAAATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
17 20 0.56
18 16 0.44
ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAAATCAAAAAAATC
Found at i:50684436 original size:26 final size:26
Alignment explanation
Indices: 50684397--50684452 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 26
50684387 CATGAGTTCA
*
50684397 AAAAAAATAAAAAAAATCAAAAAAATC
1 AAAAAAATCAAAAAAAT-AAAAAAATC
50684424 AAAAAAATC-AAAAAATCAAAAAAATC
1 AAAAAAATCAAAAAAAT-AAAAAAATC
50684450 AAA
1 AAA
50684453 GTCAAAATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11
Consensus pattern (26 bp):
AAAAAAATCAAAAAAATAAAAAAATC
Found at i:50685437 original size:21 final size:21
Alignment explanation
Indices: 50685411--50685457 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
50685401 GCTCAAATGT
50685411 TGATCAGAATAGGGCATGAAG
1 TGATCAGAATAGGGCATGAAG
* * *
50685432 TGATCAGATTGGGGCATGATG
1 TGATCAGAATAGGGCATGAAG
50685453 TGATC
1 TGATC
50685458 TTGCTATACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.11, G:0.34, T:0.26
Consensus pattern (21 bp):
TGATCAGAATAGGGCATGAAG
Found at i:50686584 original size:46 final size:46
Alignment explanation
Indices: 50686512--50687221 Score: 1141
Period size: 46 Copynumber: 15.4 Consensus size: 46
50686502 TATCAATGAG
*
50686512 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGACCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50686558 GATAGCAGATCTTATCTTCCTTTATTTGGCAGCGGAAGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50686604 GATAGCGGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50686650 GATAGCAGATCTTATCTTCCTGTATGTGGCAGTGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50686696 GATAGCCGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50686742 GATAGCAGATCTTATCTTCCTGTATGTGGCAGTGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50686788 GATAGCCGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50686834 GATAGCAGATCTTATCTTCCTGTATGTGGCAGTGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50686880 GATAGCCGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50686926 GATAGCAGATCTTATCTTCCTGTATGTGGCAGTGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
*
50686972 GATAGCCGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50687018 GATACCAGATCTTATCTTCCTGTATTTAGCAGCGGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* *
50687064 GATAGCAGATCTTATCTTCTTGTATTTGGCAGCAGAGGAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * *
50687110 GATAGTAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATTGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * ** *
50687156 GATAGTAGATCTTGTCTTTTTGTATTTGGCAGCGGAGTAGATCGAA
1 GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
* * *
50687202 GATGGTAAATCTTATCTTCC
1 GATAGCAGATCTTATCTTCC
50687222 CATTACAGTG
Statistics
Matches: 613, Mismatches: 51, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 613 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (46 bp):
GATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATCGAA
Found at i:50687352 original size:132 final size:132
Alignment explanation
Indices: 50687189--50687594 Score: 645
Period size: 132 Copynumber: 3.1 Consensus size: 132
50687179 ATTTGGCAGC
* * *
50687189 GGAGTAGATCGAAGATGGTAAATCTTATCTTCCCATTACAGTGGAGAAGCGGATTTAAGCCATTA
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTA
* * * *
50687254 GTCTTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGGTTGAATATTCTGTCACCCTAAGCAGTA
66 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTA
50687319 GT
131 GT
50687321 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAG-GAGATTTAAGCCATT
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCG-GATTTAAGCCATT
* *
50687385 AGTCCTATCACCCTAAACAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGT
65 AGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGT
50687450 AGT
130 AGT
*
50687453 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTA
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTA
* ** * *
50687518 GTCCTATCACCCTAAGCAGTAGTGGGGTAGGTCAAAGACT-ATAGATTCTGTCCCCCTAAGCAGT
66 GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGA-AGATTCTGTCACCCTAAGCAGT
50687582 AGT
130 AGT
50687585 GGAGCAGATC
1 GGAGCAGATC
50687595 AACAATAACG
Statistics
Matches: 254, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
131 1 0.00
132 253 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCGGATTTAAGCCATTA
GTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTA
GT
Found at i:50697569 original size:18 final size:18
Alignment explanation
Indices: 50697543--50697579 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
50697533 CTTTCATTTT
*
50697543 TTTTTATAACATTTTATA
1 TTTTAATAACATTTTATA
*
50697561 TTTTAATAATATTTTATA
1 TTTTAATAACATTTTATA
50697579 T
1 T
50697580 ATTTTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTAATAACATTTTATA
Found at i:50705509 original size:2 final size:2
Alignment explanation
Indices: 50705502--50705526 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
50705492 TCATGTATTA
50705502 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
50705527 AGCAAACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50709836 original size:43 final size:43
Alignment explanation
Indices: 50709775--50709888 Score: 176
Period size: 43 Copynumber: 2.7 Consensus size: 43
50709765 AACGTTTGCA
* *
50709775 GCGTTTTTTATGTGAGCGCTGCTAAAGAACATGTTCTTTAGCG
1 GCGTTTTTTATGTAAGCGCCGCTAAAGAACATGTTCTTTAGCG
*
50709818 GCGTTTTTTATGTAAGCGCCGCTAAAGAACATGTTCTTTAGTG
1 GCGTTTTTTATGTAAGCGCCGCTAAAGAACATGTTCTTTAGCG
* *
50709861 GCATTTTTT-TCTAAGCGCCGCTAAAGAA
1 GCGTTTTTTATGTAAGCGCCGCTAAAGAA
50709889 GCCGCTAGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 18 0.27
43 48 0.73
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (43 bp):
GCGTTTTTTATGTAAGCGCCGCTAAAGAACATGTTCTTTAGCG
Found at i:50710373 original size:21 final size:21
Alignment explanation
Indices: 50710347--50710395 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
50710337 TTCTTTTGAA
* *
50710347 CCTCTGTTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
*
50710368 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
50710389 CCTCTGC
1 CCTCTGC
50710396 CATAAGTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.47, G:0.18, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:50710450 original size:87 final size:87
Alignment explanation
Indices: 50710282--50710443 Score: 225
Period size: 87 Copynumber: 1.9 Consensus size: 87
50710272 TTCTGCTCTG
* ** *
50710282 CTCTGCTTCTCTCGCTGCAGCCTCTGCTTTAAGTTGTAGCTGCAGTTCTTCATATTTCTTTTGAA
1 CTCTGCTTCCCTCGCTGCAGCCTCTGCCATAAGTTGTAGCTGCAGTTCTTCATATTTCCTTTGAA
** * *
50710347 CCTCTGTTTCTCTCGCTGCAGC
66 CCTCACTGTCGCTCGCTGCAGC
* *
50710369 CTCTGCTTCCCTCGCTGCCGCCTCTGCCATAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAA
1 CTCTGCTTCCCTCGCTGCAGCCTCTGCCATAAGTTGTAGCTGCAGTTCTTCATATTTCCTTTGAA
50710434 CCTCAACTGT
66 CCTC-ACTGT
50710444 GGTCGCTTGC
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
87 63 0.97
88 2 0.03
ACGTcount: A:0.13, C:0.31, G:0.17, T:0.39
Consensus pattern (87 bp):
CTCTGCTTCCCTCGCTGCAGCCTCTGCCATAAGTTGTAGCTGCAGTTCTTCATATTTCCTTTGAA
CCTCACTGTCGCTCGCTGCAGC
Found at i:50711726 original size:9 final size:9
Alignment explanation
Indices: 50711712--50712038 Score: 83
Period size: 9 Copynumber: 37.4 Consensus size: 9
50711702 ACCTCTGCGC
50711712 GTAAGTTAT
1 GTAAGTTAT
50711721 GTAAGTTAT
1 GTAAGTTAT
* *
50711730 TTAATTTAT
1 GTAAGTTAT
50711739 GTAAGTTAT
1 GTAAGTTAT
50711748 GTAAGTTAT
1 GTAAGTTAT
* *
50711757 TTAGGTTAT
1 GTAAGTTAT
50711766 GT-A-TTAT
1 GTAAGTTAT
*
50711773 GTTAGTTAT
1 GTAAGTTAT
*
50711782 -TATGTTATTAT
1 GTAAG---TTAT
*
50711793 ATAAGTTAT
1 GTAAGTTAT
*
50711802 GCAAGTT-T
1 GTAAGTTAT
*
50711810 CT-A-TATAT
1 GTAAGT-TAT
*
50711818 GTTTA-TATATT
1 G-TAAGT-TA-T
*
50711829 GTATGTTA-
1 GTAAGTTAT
*
50711837 GTTA-TTAT
1 GTAAGTTAT
*
50711845 GTTA-TTAT
1 GTAAGTTAT
*
50711853 ATAAGTTAT
1 GTAAGTTAT
*
50711862 GCT-AGATAT
1 G-TAAGTTAT
*
50711871 ATAAGTTAT
1 GTAAGTTAT
*
50711880 TTAAGTTAT
1 GTAAGTTAT
*
50711889 -TATGTTAT
1 GTAAGTTAT
* *
50711897 -TATA-TAAA
1 GTA-AGTTAT
50711905 GT-A-TTAT
1 GTAAGTTAT
*
50711912 GTAATTTAT
1 GTAAGTTAT
*
50711921 -TATGTTAT
1 GTAAGTTAT
50711929 -T-A--TAT
1 GTAAGTTAT
50711934 GTAAGTTAT
1 GTAAGTTAT
50711943 GTAAGTTATTAT
1 GTAAG---TTAT
50711955 GTAAGTTAT
1 GTAAGTTAT
*
50711964 GCAAGCTTAAAT
1 GTAAG-TT--AT
*
50711976 ATAAGTTAT
1 GTAAGTTAT
50711985 GT-A-TTAT
1 GTAAGTTAT
* *
50711992 ATAAGTTTT
1 GTAAGTTAT
50712001 GTAAGTTAT
1 GTAAGTTAT
**
50712010 GTAAGTGGT
1 GTAAGTTAT
50712019 GT-A-TTAT
1 GTAAGTTAT
*
50712026 GTAACTTAT
1 GTAAGTTAT
50712035 GTAA
1 GTAA
50712039 AAAACTTATA
Statistics
Matches: 236, Mismatches: 48, Indels: 68
0.67 0.14 0.19
Matches are distributed among these distances:
5 3 0.01
6 2 0.01
7 26 0.11
8 41 0.17
9 127 0.54
10 11 0.05
11 9 0.04
12 17 0.07
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.50
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:50711743 original size:27 final size:27
Alignment explanation
Indices: 50711712--50711782 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
50711702 ACCTCTGCGC
*
50711712 GTAAGTTATGTAAGTTATTTAATTTAT
1 GTAAGTTATGTAAGTTATTTAAGTTAT
*
50711739 GTAAGTTATGTAAGTTATTTAGGTTAT
1 GTAAGTTATGTAAGTTATTTAAGTTAT
*
50711766 GT-A-TTATGTTAGTTATT
1 GTAAGTTATGTAAGTTATT
50711783 ATGTTATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.32
26 1 0.02
27 27 0.66
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (27 bp):
GTAAGTTATGTAAGTTATTTAAGTTAT
Found at i:50711801 original size:29 final size:29
Alignment explanation
Indices: 50711769--50711956 Score: 98
Period size: 31 Copynumber: 6.6 Consensus size: 29
50711759 AGGTTATGTA
50711769 TTATGTTAGTTATTATGTTATTATATAAG
1 TTATGTTAGTTATTATGTTATTATATAAG
** *
50711798 TTATGCAAGTTTCTATATATG-T-TTATAT-AT
1 TTATGTTAG--T-TAT-TATGTTATTATATAAG
50711828 TGTATGTTAGTTATTATGTTATTATATAAG
1 T-TATGTTAGTTATTATGTTATTATATAAG
* * *
50711858 TTATGCTAGATATATAAGTTA-T-T-TAAG
1 TTATGTTAGTTAT-TATGTTATTATATAAG
*
50711885 TTA--TTATGTTATTA---TA-TAAAGT-A-
1 TTATGTTA-GTTATTATGTTATTATA-TAAG
* *
50711908 TTATGTAATTTATTATGTTATTATATGTAAG
1 TTATGTTAGTTATTATGTTATTATA--TAAG
*
50711939 TTATGTAAGTTATTATGT
1 TTATGTTAGTTATTATGT
50711957 AAGTTATGCA
Statistics
Matches: 121, Mismatches: 16, Indels: 42
0.68 0.09 0.23
Matches are distributed among these distances:
22 3 0.02
23 3 0.02
24 7 0.06
25 7 0.06
26 4 0.03
27 13 0.11
28 8 0.07
29 27 0.22
30 11 0.09
31 30 0.25
32 4 0.03
33 4 0.03
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (29 bp):
TTATGTTAGTTATTATGTTATTATATAAG
Found at i:50711921 original size:12 final size:11
Alignment explanation
Indices: 50711885--50711963 Score: 51
Period size: 12 Copynumber: 7.4 Consensus size: 11
50711875 GTTATTTAAG
*
50711885 TTATTATGTTA
1 TTATTATGTAA
*
50711896 TTA-TAT-AAA
1 TTATTATGTAA
*
50711905 GTATTATGTAA
1 TTATTATGTAA
*
50711916 TTTATTATGTTA
1 -TTATTATGTAA
50711928 TTA-TATGTAA
1 TTATTATGTAA
*
50711938 --GTTATGTAA
1 TTATTATGTAA
50711947 GTTATTATGTAA
1 -TTATTATGTAA
50711959 GTTAT
1 -TTAT
50711964 GCAAGCTTAA
Statistics
Matches: 52, Mismatches: 9, Indels: 13
0.70 0.12 0.18
Matches are distributed among these distances:
9 10 0.19
10 12 0.23
11 8 0.15
12 22 0.42
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (11 bp):
TTATTATGTAA
Found at i:50711926 original size:32 final size:31
Alignment explanation
Indices: 50711873--50711956 Score: 116
Period size: 32 Copynumber: 2.7 Consensus size: 31
50711863 CTAGATATAT
*
50711873 AAGTTATTTAAGTTATTATGTTATTATAT-A
1 AAGTTATGTAAGTTATTATGTTATTATATGA
* *
50711903 AAGTATTATGTAATTTATTATGTTATTATATGT
1 AAG--TTATGTAAGTTATTATGTTATTATATGA
50711936 AAGTTATGTAAGTTATTATGT
1 AAGTTATGTAAGTTATTATGT
50711957 AAGTTATGCA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
30 3 0.06
31 17 0.36
32 24 0.51
33 3 0.06
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (31 bp):
AAGTTATGTAAGTTATTATGTTATTATATGA
Found at i:50711995 original size:16 final size:16
Alignment explanation
Indices: 50711974--50712037 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
50711964 GCAAGCTTAA
50711974 ATATAAGTTATGTATT
1 ATATAAGTTATGTATT
*
50711990 ATATAAGTTTTGTAAGTT
1 ATATAAGTTATGT-A-TT
* **
50712008 ATGTAAGTGGTGTATT
1 ATATAAGTTATGTATT
* *
50712024 ATGTAACTTATGTA
1 ATATAAGTTATGTA
50712038 AAAAACTTAT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
16 25 0.64
17 2 0.05
18 12 0.31
ACGTcount: A:0.33, C:0.02, G:0.19, T:0.47
Consensus pattern (16 bp):
ATATAAGTTATGTATT
Found at i:50712129 original size:62 final size:62
Alignment explanation
Indices: 50712047--50712166 Score: 195
Period size: 62 Copynumber: 1.9 Consensus size: 62
50712037 AAAAAACTTA
* *
50712047 TAAAATTAATACTAATAAATTTTATTACTAACAAATTTAGAACACTTATTTAGAAAACGAAG
1 TAAAATTAATACTAATAAATTTTAATACAAACAAATTTAGAACACTTATTTAGAAAACGAAG
* * *
50712109 TAAATTTAATACTAATAAATTTTAATACAAATAAATTTAGAAGACTTATTTAGAAAAC
1 TAAAATTAATACTAATAAATTTTAATACAAACAAATTTAGAACACTTATTTAGAAAAC
50712167 TTATAAATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (62 bp):
TAAAATTAATACTAATAAATTTTAATACAAACAAATTTAGAACACTTATTTAGAAAACGAAG
Found at i:50712134 original size:16 final size:16
Alignment explanation
Indices: 50712109--50712146 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
50712099 GAAAACGAAG
*
50712109 TAAA-TTTAATACTAA
1 TAAATTTTAATACAAA
50712124 TAAATTTTAATACAAA
1 TAAATTTTAATACAAA
50712140 TAAATTT
1 TAAATTT
50712147 AGAAGACTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAATTTTAATACAAA
Found at i:50712178 original size:17 final size:17
Alignment explanation
Indices: 50712156--50712188 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
50712146 TAGAAGACTT
50712156 ATTTAGAAAACTTATAA
1 ATTTAGAAAACTTATAA
50712173 ATTTAGAAAACTTATA
1 ATTTAGAAAACTTATA
50712189 TAGATATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (17 bp):
ATTTAGAAAACTTATAA
Found at i:50712209 original size:62 final size:57
Alignment explanation
Indices: 50712028--50712235 Score: 152
Period size: 62 Copynumber: 3.5 Consensus size: 57
50712018 TGTATTATGT
* * * * *
50712028 AACTTATGTAAAAAACTTATAAAATTAATACTAATAAATTTTATTACTAACAA-ATTTAGA
1 AACTTATTTAGAAAACTTATAAATTTAAAACTAATAAA---TATTA-AAACAATATTTAGA
** * * *
50712088 ACACTTATTTAGAAAACGAAGTAAATTTAATACTAATAAATTTTAATACAAATAAATTTAGA
1 A-ACTTATTTAGAAAACTTA-TAAATTTAAAACTAATAAATATTAAAAC-AAT--ATTTAGA
* *
50712150 AGACTTATTTAGAAAACTTATAAATTTAGAAAACTTATATAGATATTAAAACAATATTTA-C
1 A-ACTTATTTAGAAAACTTATAAATTT--AAAAC-TA-ATAAATATTAAAACAATATTTAGA
*
50712211 AA-TTATTTAGAAAACTTACAAATTT
1 AACTTATTTAGAAAACTTATAAATTT
50712236 TATAGTAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
58 2 0.02
59 28 0.23
60 2 0.02
61 22 0.18
62 47 0.39
63 4 0.03
64 5 0.04
65 11 0.09
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.36
Consensus pattern (57 bp):
AACTTATTTAGAAAACTTATAAATTTAAAACTAATAAATATTAAAACAATATTTAGA
Found at i:50713816 original size:521 final size:522
Alignment explanation
Indices: 50712834--50713877 Score: 1928
Period size: 521 Copynumber: 2.0 Consensus size: 522
50712824 GTATATATAT
50712834 CGAACTTAAAAATCATACTAAAAAACAACATGGCTTAATAAAATTCAACTTAAAAATCCATTTCA
1 CGAACTTAAAAATCATACTAAAAAACAACATGGCTTAATAAAATTCAACTTAAAAATCCATTTCA
* *
50712899 TTACCTGGAAATGTAATCGGCTGCACCACATTTACCAGAACAGTTTTAGGAATTAATAAATTAAA
66 TTACCTGGAAATGTAATCGGCTGCACCACATTTAACAGAACAGTTTTAGAAATTAATAAATTAAA
*
50712964 CCCTAAACTAGACATCAAAGTTCCATACTTTAAAAACAGTACCAAATGAGTTCGACAAATAAACA
131 CCCTAAACTAGACATCAAAGTTCCATACTTTAAAAACAGTACCAAATGAGTTCAACAAATAAACA
50713029 GTAACAAAGCATGTGTTCTGTACCTTCAGAACGATGAAGAAAACTGAAATGAAAGCAATGAAATG
196 GTAACAAAGCATGTGTTCTGTACCTTCAGAACGATGAAGAAAACTGAAATGAAAGCAATGAAATG
50713094 GATTGACCAAAAACTGGAGAAAAAAAACAAAAGTTAAAATCAATTCCTAACAAATTAAACCATTC
261 GATTGACCAAAAACTGGAGAAAAAAAACAAAAGTTAAAATCAATTCCTAACAAATTAAACCATTC
* *
50713159 ACAAAAACAGTAATGAACAATAGAAGCAGTAATTTACCTTCACGAGGATGAACAAAATAGTCGAA
326 ACAAAAACAGTAATGAACAATAGAAGCAGTAATTTACCTTAACGAGGATGAACAAAACAGTCGAA
50713224 CACACCGAAAACCCTAAACACAGAGAATACATTTTTTTTAATTCCAGTATCACCAACCAATAAGA
391 CACACCGAAAACCCTAAACACAGAGAATACATTTTTTTTAATTCCAGTATCACCAACCAATAAGA
50713289 AAGCAAAATCAAAATTAAAAATACAACAAAACCCAATGTATAAATACGAAGAATCGGACATCCGA
456 AAGCAAAATCAAAATTAAAAATACAACAAAACCCAATGTATAAATACGAAGAATCGGACATCCGA
50713354 AC
521 AC
*
50713356 CGAACTTAAAAATCATACTAAAAAACAACATGGCTTAATAAAATTCAACTT-AAAATCTATTTCA
1 CGAACTTAAAAATCATACTAAAAAACAACATGGCTTAATAAAATTCAACTTAAAAATCCATTTCA
*
50713420 TTACCTGGAAATGTAATCGGCTGCACCACATTTAACAGAACAGTTTTATAAATTAATAAATTAAA
66 TTACCTGGAAATGTAATCGGCTGCACCACATTTAACAGAACAGTTTTAGAAATTAATAAATTAAA
*
50713485 CCCTAAACTAGACATCAAATTTCCATACTTTAAAAACAGTACCAAATGAGTTCAACAAATAAACA
131 CCCTAAACTAGACATCAAAGTTCCATACTTTAAAAACAGTACCAAATGAGTTCAACAAATAAACA
*
50713550 GTAACAAAGCATGTGTTCTGTACCTTCAGAACGATGAAGAAAACTGAAATGAATGCAATGAAATG
196 GTAACAAAGCATGTGTTCTGTACCTTCAGAACGATGAAGAAAACTGAAATGAAAGCAATGAAATG
*
50713615 GATTGACCAAAAACTGGAGAAAAAAAACAAAAGTTAAAATCAGTTCCTAACAAATTAAACCATTC
261 GATTGACCAAAAACTGGAGAAAAAAAACAAAAGTTAAAATCAATTCCTAACAAATTAAACCATTC
50713680 ACAAAAACAGTAATGAACAATAGAAGCAGTAATTTACCTTAACGAGGATGAACAAAACAGTCGAA
326 ACAAAAACAGTAATGAACAATAGAAGCAGTAATTTACCTTAACGAGGATGAACAAAACAGTCGAA
* * *
50713745 TACACTGAAAACCCTAAACACAGAGAATACATTTTTTTTTATTCCAGTATCACCAACCAATAAGA
391 CACACCGAAAACCCTAAACACAGAGAATACATTTTTTTTAATTCCAGTATCACCAACCAATAAGA
* * * *
50713810 AAGCAAAATTAAAATTAAAAATACGACAAAACCCAATGTATAAATACGAAGAATCGGAGATTCGA
456 AAGCAAAATCAAAATTAAAAATACAACAAAACCCAATGTATAAATACGAAGAATCGGACATCCGA
50713875 AC
521 AC
50713877 C
1 C
50713878 TTACGATGTT
Statistics
Matches: 505, Mismatches: 17, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
521 454 0.90
522 51 0.10
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (522 bp):
CGAACTTAAAAATCATACTAAAAAACAACATGGCTTAATAAAATTCAACTTAAAAATCCATTTCA
TTACCTGGAAATGTAATCGGCTGCACCACATTTAACAGAACAGTTTTAGAAATTAATAAATTAAA
CCCTAAACTAGACATCAAAGTTCCATACTTTAAAAACAGTACCAAATGAGTTCAACAAATAAACA
GTAACAAAGCATGTGTTCTGTACCTTCAGAACGATGAAGAAAACTGAAATGAAAGCAATGAAATG
GATTGACCAAAAACTGGAGAAAAAAAACAAAAGTTAAAATCAATTCCTAACAAATTAAACCATTC
ACAAAAACAGTAATGAACAATAGAAGCAGTAATTTACCTTAACGAGGATGAACAAAACAGTCGAA
CACACCGAAAACCCTAAACACAGAGAATACATTTTTTTTAATTCCAGTATCACCAACCAATAAGA
AAGCAAAATCAAAATTAAAAATACAACAAAACCCAATGTATAAATACGAAGAATCGGACATCCGA
AC
Found at i:50716448 original size:20 final size:21
Alignment explanation
Indices: 50716394--50716448 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
50716384 CGCTGAAATG
* *
50716394 TAAACTCTAAACCTTAAACCT
1 TAAACTCTAAGCCCTAAACCT
* * *
50716415 CAATCTCCAAGCCCTAAA-CT
1 TAAACTCTAAGCCCTAAACCT
50716435 TAAACTCTAAGCCC
1 TAAACTCTAAGCCC
50716449 AGAACACAAA
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.38, C:0.35, G:0.04, T:0.24
Consensus pattern (21 bp):
TAAACTCTAAGCCCTAAACCT
Found at i:50716982 original size:134 final size:133
Alignment explanation
Indices: 50716817--50717228 Score: 521
Period size: 133 Copynumber: 3.1 Consensus size: 133
50716807 TTTAACATTT
* * * * *
50716817 CGCCACTAAAG-CATAAAAGGAAACAACAAAACGATACTGTTTTGCTCAAAATTTTTCCTCAAAT
1 CGCCACTAAAGAAATAAAATGAAACAATAAAACGGTACTGTTTTGCTCAAATTTTTTCCTCAAAT
* * * *
50716881 TAGATATCATTACCGGCGTTTCTCCAATAACGCCACTATATCCCAATATTTGCGGCGTTTTTTGC
66 TAGATATCTTTACCGGCGTTTCTCCAAAAACGCCGCTATAT-CCAATTTTTGCGGCGTTTTTTGC
50716946 AATG
130 AATG
* *
50716950 CGCCACTAAAGAAATAAAATGAAGCAATAAAACGGTAGTGTTTTG-TCCAAATTTTTTCCTCAAA
1 CGCCACTAAAGAAATAAAATGAAACAATAAAACGGTACTGTTTTGCT-CAAATTTTTTCCTCAAA
* ** *
50717014 TCAGATATCTTTACCGGCGTTTC-CCTAAAAACGCCGCTA-ATTGAATCTTTTCCGGCGTTTTTT
65 TTAGATATCTTTACCGGCGTTTCTCC-AAAAACGCCGCTATATCCAAT-TTTTGCGGCGTTTTTT
*
50717077 ACAATG
128 GCAATG
*
50717083 CGCCACTAAAGAAATAAAATGAAACAATAAAACGGTACTGTTTTGCTCAGATTTTTTCCTCAAAT
1 CGCCACTAAAGAAATAAAATGAAACAATAAAACGGTACTGTTTTGCTCAAATTTTTTCCTCAAAT
* *
50717148 TCGTTATCTTTACCGGCGTTTCT-CAGAAAACGCCGCTATATTCCAATTTTTTGCGGCGTTTTTA
66 TAGATATCTTTACCGGCGTTTCTCCA-AAAACGCCGCTATA-TCCAA-TTTTTGCGGCGTTTTT-
* *
50717212 TGGAA-A
127 TGCAATG
50717218 CGCCACTAAAG
1 CGCCACTAAAG
50717229 CCATAAAGTA
Statistics
Matches: 240, Mismatches: 28, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
132 4 0.02
133 127 0.53
134 77 0.32
135 28 0.12
136 4 0.02
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.32
Consensus pattern (133 bp):
CGCCACTAAAGAAATAAAATGAAACAATAAAACGGTACTGTTTTGCTCAAATTTTTTCCTCAAAT
TAGATATCTTTACCGGCGTTTCTCCAAAAACGCCGCTATATCCAATTTTTGCGGCGTTTTTTGCA
ATG
Found at i:50721785 original size:19 final size:20
Alignment explanation
Indices: 50721747--50721818 Score: 94
Period size: 19 Copynumber: 3.6 Consensus size: 20
50721737 ATTACAAAAA
50721747 TAAAATTCAAAATAATTTTT
1 TAAAATTCAAAATAATTTTT
*
50721767 TAAAATTCAAATTAA-TTTT
1 TAAAATTCAAAATAATTTTT
*
50721786 TAAAATTCAAAAT-ATTTAT
1 TAAAATTCAAAATAATTTTT
*
50721805 AAAAATTCCAAAAT
1 TAAAATT-CAAAAT
50721819 TTATATTTCT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
18 1 0.02
19 25 0.54
20 20 0.43
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAAATTCAAAATAATTTTT
Found at i:50722215 original size:20 final size:21
Alignment explanation
Indices: 50722175--50722215 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50722165 AAAAAGAAAT
* *
50722175 ACACCAAAAAATCGCTGAAAG
1 ACACCAAAAAATCACTAAAAG
50722196 ACACCAAAAAAT-ACTAAAAG
1 ACACCAAAAAATCACTAAAAG
50722216 TACCAACTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.59, C:0.22, G:0.10, T:0.10
Consensus pattern (21 bp):
ACACCAAAAAATCACTAAAAG
Found at i:50722940 original size:14 final size:14
Alignment explanation
Indices: 50722923--50722950 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50722913 GGGTTTATGA
50722923 GTTTTGGTTATAGG
1 GTTTTGGTTATAGG
50722937 GTTTTGGTTATAGG
1 GTTTTGGTTATAGG
50722951 TAAATGATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (14 bp):
GTTTTGGTTATAGG
Found at i:50723103 original size:24 final size:25
Alignment explanation
Indices: 50723076--50723122 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
50723066 AGAGGAAAGT
50723076 TTAAAGAACATAAAA-GAAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAAA
** *
50723100 TTAAATTACTTAAAACGAAAAAA
1 TTAAAGAACATAAAACGAAAAAA
50723123 TATGGGGATC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.19
Consensus pattern (25 bp):
TTAAAGAACATAAAACGAAAAAAAA
Found at i:50728791 original size:18 final size:18
Alignment explanation
Indices: 50728758--50728801 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
50728748 TTTTTATGTG
* * *
50728758 TGTTTATTTTTGTTTTTA
1 TGTTTATGTTTCTTTTAA
50728776 TGTTTATGTTTCTTTTAA
1 TGTTTATGTTTCTTTTAA
*
50728794 TTTTTATG
1 TGTTTATG
50728802 CATTTTTCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.14, C:0.02, G:0.11, T:0.73
Consensus pattern (18 bp):
TGTTTATGTTTCTTTTAA
Found at i:50731649 original size:61 final size:59
Alignment explanation
Indices: 50731529--50731650 Score: 147
Period size: 61 Copynumber: 2.0 Consensus size: 59
50731519 AAAATTGAGA
* * *
50731529 TCGGAAAATAAAATGGAGCCACTTGGTAATTTACGCGATTTATTTTCCTAGTTCAAGATT
1 TCGGAAAATAAAATGGAACCACTTGGTAATTTACACGATTTATTTT-CTAGTACAAGATT
* * *
50731589 NTCGGAAGATAAAATGGAACCACTTGGTAATTTCCACGATTTATGTCTT-TAGTACGAGATT
1 -TCGGAAAATAAAATGGAACCACTTGGTAATTTACACGATTTAT-T-TTCTAGTACAAGATT
50731650 T
1 T
50731651 GGTGAACCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
60 1 0.02
61 49 0.92
62 1 0.02
63 2 0.04
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (59 bp):
TCGGAAAATAAAATGGAACCACTTGGTAATTTACACGATTTATTTTCTAGTACAAGATT
Found at i:50735974 original size:58 final size:58
Alignment explanation
Indices: 50735831--50735977 Score: 179
Period size: 58 Copynumber: 2.6 Consensus size: 58
50735821 GAAACAAATT
* * * * *
50735831 ACATCCCTCC-AAACACACCAGAGAGCACTGAATTGCTAAAATTGAAAACAATAGATC
1 ACATCCCTCCAAAACACACCAAAAAGCACTAAAGTGATAAAATTGAAAACAATAGATC
* *** * * *
50735888 AAATCCCTCCAAAACACATTGAATAGCACTAAAGTGATAAACTTGAAGACAATAGATC
1 ACATCCCTCCAAAACACACCAAAAAGCACTAAAGTGATAAAATTGAAAACAATAGATC
50735946 ACATCCCTCCAAAACACACCAAAAAGCACTAA
1 ACATCCCTCCAAAACACACCAAAAAGCACTAA
50735978 GGTGCTAAGC
Statistics
Matches: 73, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
57 9 0.12
58 64 0.88
ACGTcount: A:0.46, C:0.27, G:0.10, T:0.17
Consensus pattern (58 bp):
ACATCCCTCCAAAACACACCAAAAAGCACTAAAGTGATAAAATTGAAAACAATAGATC
Found at i:50740347 original size:16 final size:16
Alignment explanation
Indices: 50740326--50740361 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
50740316 AATGCCATAG
50740326 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50740342 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50740358 TACA
1 TACA
50740362 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:50758830 original size:23 final size:22
Alignment explanation
Indices: 50758779--50758830 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
50758769 CCTCGTCTTT
*
50758779 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
50758801 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
50758824 TTCTTTT
1 TTCTTTT
50758831 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:50761518 original size:87 final size:87
Alignment explanation
Indices: 50761372--50761544 Score: 337
Period size: 87 Copynumber: 2.0 Consensus size: 87
50761362 CTTGATTGGG
*
50761372 CTGGATTTTGGTTATTGGGCCTCGCCTTCAAGAATTTGGGCTCGTGATCCATCTCCTACCAAAAT
1 CTGGATTTTGGTTATTGGGCCTCACCTTCAAGAATTTGGGCTCGTGATCCATCTCCTACCAAAAT
50761437 TGGGTCGTTGACGCTCGTAATA
66 TGGGTCGTTGACGCTCGTAATA
50761459 CTGGATTTTGGTTATTGGGCCTCACCTTCAAGAATTTGGGCTCGTGATCCATCTCCTACCAAAAT
1 CTGGATTTTGGTTATTGGGCCTCACCTTCAAGAATTTGGGCTCGTGATCCATCTCCTACCAAAAT
50761524 TGGGTCGTTGACGCTCGTAAT
66 TGGGTCGTTGACGCTCGTAAT
50761545 GGAGATCCAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.34
Consensus pattern (87 bp):
CTGGATTTTGGTTATTGGGCCTCACCTTCAAGAATTTGGGCTCGTGATCCATCTCCTACCAAAAT
TGGGTCGTTGACGCTCGTAATA
Found at i:50764721 original size:200 final size:200
Alignment explanation
Indices: 50764378--50764778 Score: 775
Period size: 200 Copynumber: 2.0 Consensus size: 200
50764368 GGGTGGTCGA
*
50764378 TTTGGGATTGAAGCTCCGGGTACTAAGTCAATTTGATGTTCTATCCCTCGTAAAGGTGGTAAACT
1 TTTGGGATTGAAGCTCCGGGTACTAAGTCAATTTGATGTTCTATCCCTCGTAAAGGTGGTAAACC
50764443 TTTAGGGGCCTCACTAAAAACATCCTCATAATCCTGCAAAAGAGATTGAAACACACTAGGCAAAT
66 TTTAGGGGCCTCACTAAAAACATCCTCATAATCCTGCAAAAGAGATTGAAACACACTAGGCAAAT
50764508 TTTCGTTAATGTTAGATAAAGATAAATAATTTTGCCTAAACCTCACAAGGATACAAGGCTGTTTA
131 TTTCGTTAATGTTAGATAAAGATAAATAATTTTGCCTAAACCTCACAAGGATACAAGGCTGTTTA
50764573 TTAAG
196 TTAAG
50764578 TTTGGGATTGAAGCTCCGGGTACTAAGTCAATTTGATGTTCTATCCCTCGTAAAGGTGGTAAACC
1 TTTGGGATTGAAGCTCCGGGTACTAAGTCAATTTGATGTTCTATCCCTCGTAAAGGTGGTAAACC
*
50764643 TTTAGGGGCCTCACTAAAAACATCCTCTTAATCCTGCAAAAGAGATTGAAACACACTAGGCAAAT
66 TTTAGGGGCCTCACTAAAAACATCCTCATAATCCTGCAAAAGAGATTGAAACACACTAGGCAAAT
*
50764708 TTTCGTTAATGTTAGATAAAGATAAGTAATTTTGCCTAAACCTCACAAGGATACAAGGCTGTTTA
131 TTTCGTTAATGTTAGATAAAGATAAATAATTTTGCCTAAACCTCACAAGGATACAAGGCTGTTTA
50764773 TTAAG
196 TTAAG
50764778 T
1 T
50764779 AGGGCTCTCT
Statistics
Matches: 198, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 198 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (200 bp):
TTTGGGATTGAAGCTCCGGGTACTAAGTCAATTTGATGTTCTATCCCTCGTAAAGGTGGTAAACC
TTTAGGGGCCTCACTAAAAACATCCTCATAATCCTGCAAAAGAGATTGAAACACACTAGGCAAAT
TTTCGTTAATGTTAGATAAAGATAAATAATTTTGCCTAAACCTCACAAGGATACAAGGCTGTTTA
TTAAG
Found at i:50771210 original size:20 final size:19
Alignment explanation
Indices: 50771187--50771251 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
50771177 AAGCTCAAAC
50771187 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
50771207 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
50771227 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
50771247 GAGCT
1 GAGCT
50771252 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:50779348 original size:63 final size:63
Alignment explanation
Indices: 50779281--50779399 Score: 220
Period size: 63 Copynumber: 1.9 Consensus size: 63
50779271 AGCCACCCTA
*
50779281 CATTACATTACAATTAGAGTGAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTCACTTAT
1 CATTACATTACAATTACAGTGAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTCACTTAT
*
50779344 CATTACATTACAATTACATTGAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTT
1 CATTACATTACAATTACAGTGAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTT
50779400 TGAGTTCTTC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (63 bp):
CATTACATTACAATTACAGTGAAAATTTCAGATTTGATTTGAGTGAAAATTCTCTTCACTTAT
Found at i:50780667 original size:62 final size:62
Alignment explanation
Indices: 50780596--50780967 Score: 744
Period size: 62 Copynumber: 6.0 Consensus size: 62
50780586 ATGTATATGG
50780596 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
1 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
50780658 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
1 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
50780720 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
1 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
50780782 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
1 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
50780844 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
1 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
50780906 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
1 CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
50780968 TTCTGTTTTC
Statistics
Matches: 310, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 310 1.00
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.47
Consensus pattern (62 bp):
CTTTTTGCTTATTCAAGTAATGAAGTTAATTTTTTCTTCATCATCCAACATCTGGATTTTGC
Found at i:50783698 original size:76 final size:76
Alignment explanation
Indices: 50783572--50783723 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
50783562 GTGATAATAC
50783572 CTTGTTATTTAAATGTTAAACGTAACTGCTGCTTTGCCATGTTACTTCGAATATGTGTATTCATG
1 CTTGTTATTTAAATGTTAAACGTAACTGCTGCTTTGCCATGTTACTTCGAATATGTGTATTCATG
50783637 TCCAAATATGA
66 TCCAAATATGA
50783648 CTTGTTATTTAAATGTTAAACGTAACTGCTGCTTTGCCATGTTACTTCGAATATGTGTATTCATG
1 CTTGTTATTTAAATGTTAAACGTAACTGCTGCTTTGCCATGTTACTTCGAATATGTGTATTCATG
50783713 TCCAAATATGA
66 TCCAAATATGA
50783724 TCTTCCAAAT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.41
Consensus pattern (76 bp):
CTTGTTATTTAAATGTTAAACGTAACTGCTGCTTTGCCATGTTACTTCGAATATGTGTATTCATG
TCCAAATATGA
Found at i:50788299 original size:21 final size:21
Alignment explanation
Indices: 50788273--50788313 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50788263 AGATGAGCAA
* *
50788273 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
50788294 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
50788314 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:50796911 original size:16 final size:17
Alignment explanation
Indices: 50796884--50796918 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
50796874 TTAGAATTGG
*
50796884 ATTGAGAAAATTATTTA
1 ATTGAGAAAATTAATTA
50796901 ATTGA-AAAATTAATTA
1 ATTGAGAAAATTAATTA
50796917 AT
1 AT
50796919 CAATTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (17 bp):
ATTGAGAAAATTAATTA
Found at i:50798298 original size:18 final size:18
Alignment explanation
Indices: 50798275--50798310 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
50798265 AATTTTTAAA
*
50798275 TTTGAATAACTCGAATAT
1 TTTGAATAAATCGAATAT
50798293 TTTGAATAAATCGAATAT
1 TTTGAATAAATCGAATAT
50798311 AAACCATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (18 bp):
TTTGAATAAATCGAATAT
Found at i:50799313 original size:14 final size:14
Alignment explanation
Indices: 50799294--50799321 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50799284 TAAAATTTTG
50799294 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
50799308 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
50799322 TACATTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:50799360 original size:30 final size:29
Alignment explanation
Indices: 50799316--50799394 Score: 77
Period size: 30 Copynumber: 2.7 Consensus size: 29
50799306 ATAAAAAAAT
*
50799316 AAAAATTACATTTTGGCCCCCAAACTTTTC
1 AAAAATTACATTTT-GACCCCAAACTTTTC
** *
50799346 AAAAATTATGTTTTGACCCCTAACTTTTTC
1 AAAAATTACATTTTGACCCCAAAC-TTTTC
* * *
50799376 TAAATTTACATATTGACCC
1 AAAAATTACATTTTGACCC
50799395 TTAATATTTC
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 8 0.21
30 31 0.79
ACGTcount: A:0.33, C:0.23, G:0.06, T:0.38
Consensus pattern (29 bp):
AAAAATTACATTTTGACCCCAAACTTTTC
Found at i:50799653 original size:22 final size:22
Alignment explanation
Indices: 50799628--50799669 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
50799618 AACAAGAAGG
50799628 AAAAAGACAAAATTGAAAGATT
1 AAAAAGACAAAATTGAAAGATT
*
50799650 AAAAAGAGAAAATTGAAAGA
1 AAAAAGACAAAATTGAAAGA
50799670 GAAAAGGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.67, C:0.02, G:0.17, T:0.14
Consensus pattern (22 bp):
AAAAAGACAAAATTGAAAGATT
Found at i:50800061 original size:10 final size:10
Alignment explanation
Indices: 50800038--50800093 Score: 62
Period size: 10 Copynumber: 5.8 Consensus size: 10
50800028 GTGCGACCCG
* *
50800038 AAGAAGAAGG
1 AAGAAAAAGA
*
50800048 AAGATAAAGA
1 AAGAAAAAGA
50800058 AAGAAAAAG-
1 AAGAAAAAGA
*
50800067 GAGAAAAAGA
1 AAGAAAAAGA
50800077 AAGAAAAA-A
1 AAGAAAAAGA
50800086 AAGAAAAA
1 AAGAAAAA
50800094 AAAAAGCAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
9 17 0.44
10 22 0.56
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:50800077 original size:19 final size:20
Alignment explanation
Indices: 50800038--50800093 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
50800028 GTGCGACCCG
* *
50800038 AAGAAGAAGGAAGATAAAGA
1 AAGAAAAAGGAAGAAAAAGA
50800058 AAGAAAAAGG-AGAAAAAGA
1 AAGAAAAAGGAAGAAAAAGA
*
50800077 AAGAAAAA-AAAGAAAAA
1 AAGAAAAAGGAAGAAAAA
50800094 AAAAAGCAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 23 0.72
20 9 0.28
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (20 bp):
AAGAAAAAGGAAGAAAAAGA
Found at i:50800079 original size:13 final size:13
Alignment explanation
Indices: 50800070--50800098 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
50800060 GAAAAAGGAG
50800070 AAAAAGAAAGAAA
1 AAAAAGAAAGAAA
50800083 AAAAAGAAA-AAA
1 AAAAAGAAAGAAA
50800095 AAAA
1 AAAA
50800099 GCAAAAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:50800093 original size:9 final size:9
Alignment explanation
Indices: 50800057--50800096 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
50800047 GAAGATAAAG
50800057 AAAGAAAAA
1 AAAGAAAAA
**
50800066 GGAGAAAAA
1 AAAGAAAAA
50800075 GAAAGAAAAA
1 -AAAGAAAAA
50800085 AAAGAAAAA
1 AAAGAAAAA
50800094 AAA
1 AAA
50800097 AAGCAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
9 19 0.73
10 7 0.27
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:50808432 original size:11 final size:11
Alignment explanation
Indices: 50808408--50808471 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
50808398 ATGCCTGAAA
*
50808408 AAAAAAAGAGAC
1 AAAAAAACA-AC
50808420 AAAAAAACAAC
1 AAAAAAACAAC
** *
50808431 AAAAAAGGAAT
1 AAAAAAACAAC
50808442 AAAAAAACAA-
1 AAAAAAACAAC
* *
50808452 AAGAAAA-AAG
1 AAAAAAACAAC
50808462 AAAAAAACAA
1 AAAAAAACAA
50808472 AGAAAAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
9 2 0.05
10 12 0.29
11 20 0.48
12 8 0.19
ACGTcount: A:0.81, C:0.08, G:0.09, T:0.02
Consensus pattern (11 bp):
AAAAAAACAAC
Found at i:50808434 original size:22 final size:20
Alignment explanation
Indices: 50808407--50808488 Score: 71
Period size: 22 Copynumber: 4.0 Consensus size: 20
50808397 TATGCCTGAA
50808407 AAAAAAAAGAGACAAAAAAAC
1 AAAAAAAAGAGA-AAAAAAAC
50808428 AACAAAAAAG-GAATAAAAAAAC
1 AA-AAAAAAGAG-A-AAAAAAAC
*
50808450 AAAAGAAAAAAG-AAAAAAAC
1 AAAA-AAAAGAGAAAAAAAAC
*
50808470 AAAGAAAAGA-AAAAGAAAA
1 AAAAAAAAGAGAAAA-AAAA
50808489 ATCAAGATGA
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
19 8 0.16
20 15 0.29
21 5 0.10
22 22 0.43
23 1 0.02
ACGTcount: A:0.82, C:0.06, G:0.11, T:0.01
Consensus pattern (20 bp):
AAAAAAAAGAGAAAAAAAAC
Found at i:50808482 original size:23 final size:23
Alignment explanation
Indices: 50808405--50808489 Score: 86
Period size: 23 Copynumber: 3.7 Consensus size: 23
50808395 ATTATGCCTG
*
50808405 AAAA-AAAAAAGAGACAAAAAAAC
1 AAAAGAAAAAAGA-AAAAAAAAAC
* * *
50808428 AACA-AAAAAGGAATAAAAAAAC
1 AAAAGAAAAAAGAAAAAAAAAAC
*
50808450 AAAAGAAAAAAGAAAAAAACAAAG
1 AAAAGAAAAAAGAAAAAAA-AAAC
50808474 AAAAG-AAAAAGAAAAA
1 AAAAGAAAAAAGAAAAA
50808490 TCAAGATGAA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
22 12 0.23
23 33 0.62
24 8 0.15
ACGTcount: A:0.82, C:0.06, G:0.11, T:0.01
Consensus pattern (23 bp):
AAAAGAAAAAAGAAAAAAAAAAC
Found at i:50809488 original size:78 final size:79
Alignment explanation
Indices: 50809373--50810220 Score: 813
Period size: 78 Copynumber: 10.8 Consensus size: 79
50809363 CAATCTCTGC
*
50809373 TTTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTGTTTC
1 TTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
50809437 TTTCAAATTTCCGT
66 TTTCAAATTTCCGT
*
50809451 TTTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTGTTTC
1 TTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
50809515 TTTCAAATTTCCGT
66 TTTCAAATTTCCGT
*
50809529 TTTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTGTTTC
1 TTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
50809593 TTTCAAATTTCC--
66 TTTCAAATTTCCGT
* *
50809605 ATTTTTCAAAAATCAACTCATAATA-TAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
1 TTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
*
50809669 TTTTAAATTTCCG-
66 TTTCAAATTTCCGT
50809682 -TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
1 TTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
*
50809745 TTTTAAATTTCCG-
66 TTTCAAATTTCCGT
* * * * * * *
50809758 -TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGAGTCACATGTCGTGGTTT
1 TTTTTTC-AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTAT
* *
50809822 TTCTTTTAAATTTCTGT
63 TTCTTTCAAATTTCCGT
*** * * *
50809839 TTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGATA
1 TTTT--TTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTA
* ***
50809904 -TT-TTTC-AATTACTAC
62 TTTCTTTCAAATTTCCGT
*** * * * * * * *
50809919 TTTTAAAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCTTCGAGTCACATGTCGTGGTATT
1 TTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTATT
* **
50809984 TCTTTTAAATTTTTGCT
64 TCTTTCAAATTTCCG-T
**** * * *
50810001 TTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCCGGGTCACATGCCGAGGTA
1 TTT--TTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTA
*
50810066 -TT-TTTC-AATTTTC-T
62 TTTCTTTCAAATTTCCGT
* * * * * * *
50810080 GTTTTTCAAAAATCAACTCATAATGCGAGAGGAGAGTTAAGCCTCAGGTCACGCTGAGGTA--T-
1 TTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
**
50810142 TTTC-AATTTATGT
66 TTTCAAATTTCCGT
**** * * * * *
50810155 TTTCAAAAAAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGAGTTAAGCTGAGGTATT
1 TTT--TTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATT
50810220 T
64 T
50810221 TTTAATTTTT
Statistics
Matches: 678, Mismatches: 70, Indels: 43
0.86 0.09 0.05
Matches are distributed among these distances:
74 10 0.01
75 13 0.02
76 153 0.23
77 101 0.15
78 227 0.33
79 6 0.01
80 38 0.06
81 14 0.02
82 11 0.02
83 52 0.08
84 53 0.08
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (79 bp):
TTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
TTTCAAATTTCCGT
Found at i:50809669 original size:154 final size:155
Alignment explanation
Indices: 50809380--50810202 Score: 873
Period size: 154 Copynumber: 5.3 Consensus size: 155
50809370 TGCTTTTTTC
50809380 AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTGTTTCTTTCAAA
1 AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGT-TTTCTTTCAAA
* *
50809444 TTTCCGTTTTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAG
65 TTTCC--ATTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAG
* * * ***
50809508 GTGTTTCTTTCAAATTTCCGTTTTTTTC
128 GTATTTCTTTTAAATTTCTGTTTTTAAA
50809536 AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTGTTTCTTTCAAA
1 AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGT-TTTCTTTCAAA
**
50809600 TTTCCATTTTTCAAAAATCAACTCATAAT-ATAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGT
65 TTTCCATTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGT
* *
50809664 ATTTCTTTTAAATTTCCGTTTTT--C
130 ATTTCTTTTAAATTTCTGTTTTTAAA
*
50809688 AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTTTTAAA
1 AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGT-TTTCTTTCAAA
* * * * * *
50809752 TTTCCGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGAGTCACATGTCGT
65 TTTCCATTTTTC-AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGA
*
50809817 GGTTTTTCTTTTAAATTTCTGTTTTTCAAAA
127 GGTATTTCTTTTAAATTTCTGTTTTT--AAA
* * * *
50809848 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGATATT-TTTC-A
1 AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTTTTCTTTCAA
* * ** * * * * *
50809911 ATTACTACTTTTAAAAAAAATCAACTCATATTGCGAGGGGTGAGTTGAGCTTCGAGTCACATGTC
64 ATTTCCA-TTTT-TCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT--CATGCC
* * *
50809976 GTGGTATTTCTTTTAAATTTTTGCTTTTCAAAAA
125 GAGGTATTTCTTTTAAATTTCTG-TTTT--TAAA
* * * *
50810010 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCCCGGGTCACATGCCGAGGTATT-TTTCAA
1 AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGT--CATGCCGAGGTTTTCTTTCAA
* ** * * * * *
50810074 TTTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGAGAGTTAAGCCTCAGGTCACGCTGAGG
64 ATTTCCATTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGG
* * *
50810139 TA----TTTTCAATTTATGTTTTCAAAAA
129 TATTTCTTTTAAATTTCTGTTTT--TAAA
*
50810164 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCG
1 AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCG
50810203 AGTTAAGCTG
Statistics
Matches: 595, Mismatches: 54, Indels: 38
0.87 0.08 0.06
Matches are distributed among these distances:
152 74 0.12
153 16 0.03
154 143 0.24
155 11 0.02
156 99 0.17
159 8 0.01
160 22 0.04
161 134 0.23
162 73 0.12
163 15 0.03
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (155 bp):
AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTTTTCTTTCAAAT
TTCCATTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTA
TTTCTTTTAAATTTCTGTTTTTAAA
Found at i:50810249 original size:16 final size:16
Alignment explanation
Indices: 50810229--50810258 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
50810219 TTTTTAATTT
50810229 TTTTTTC-TTTCTTTC
1 TTTTTTCTTTTCTTTC
50810244 TTTTTTCTTTTCTTT
1 TTTTTTCTTTTCTTT
50810259 TTCTTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTTTTCTTTTCTTTC
Found at i:50810605 original size:8 final size:8
Alignment explanation
Indices: 50810592--50810621 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
50810582 TAAAATTTTG
50810592 AAAAAAAT
1 AAAAAAAT
50810600 AAAAAAAT
1 AAAAAAAT
50810608 ACAAAAAAT
1 A-AAAAAAT
50810617 AAAAA
1 AAAAA
50810622 TTACATTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.87, C:0.03, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:50811366 original size:10 final size:10
Alignment explanation
Indices: 50811343--50811418 Score: 70
Period size: 10 Copynumber: 7.9 Consensus size: 10
50811333 GTGCGACCCG
* *
50811343 AAGAAGAAGG
1 AAGAAAAAGA
*
50811353 AAGATAAAGA
1 AAGAAAAAGA
50811363 AAGAAAAAG-
1 AAGAAAAAGA
*
50811372 GAGAAAAAGA
1 AAGAAAAAGA
50811382 AA-AAAAAGGA
1 AAGAAAAA-GA
50811392 AAG-AAAA-A
1 AAGAAAAAGA
*
50811400 AAGAAAAAAA
1 AAGAAAAAGA
50811410 AAGAAAAAG
1 AAGAAAAAG
50811419 CAAAAATCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
8 4 0.07
9 17 0.31
10 33 0.61
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.01
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:50811372 original size:20 final size:19
Alignment explanation
Indices: 50811343--50811407 Score: 73
Period size: 19 Copynumber: 3.4 Consensus size: 19
50811333 GTGCGACCCG
*
50811343 AAGAAGAAGGAAGATAAAGA
1 AAGAAAAAGGAAGA-AAAGA
50811363 AAGAAAAAGG-AGAAAAAGA
1 AAGAAAAAGGAAG-AAAAGA
50811382 AA-AAAAAGGAAAGAAAA-A
1 AAGAAAAAGG-AAGAAAAGA
50811400 AAGAAAAA
1 AAGAAAAA
50811408 AAAAGAAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
18 10 0.25
19 18 0.45
20 12 0.30
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (19 bp):
AAGAAAAAGGAAGAAAAGA
Found at i:50811389 original size:18 final size:18
Alignment explanation
Indices: 50811358--50811424 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 18
50811348 GAAGGAAGAT
50811358 AAAGAAAGAAAAAGGAGAA
1 AAAGAAA-AAAAAGGAGAA
50811377 AAAGAAAAAAAAGGAAAGAAAA
1 AAAGAAAAAAAAGG--AG--AA
50811399 AAAGAAAAAAAA--AGAA
1 AAAGAAAAAAAAGGAGAA
50811415 AAAGCAAAAA
1 AAAG-AAAAA
50811425 TCAACAGTCG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
16 6 0.14
17 5 0.12
18 9 0.21
19 7 0.16
20 2 0.05
22 14 0.33
ACGTcount: A:0.81, C:0.01, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAAAAGGAGAA
Found at i:50811393 original size:29 final size:29
Alignment explanation
Indices: 50811353--50811418 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
50811343 AAGAAGAAGG
* * *
50811353 AAGATAAA-GAAAGAAAAAGGAGAAAAAGA
1 AAGAAAAAGGAAAGAAAAA-AAGAAAAAAA
50811382 AA-AAAAAGGAAAGAAAAAAAGAAAAAAA
1 AAGAAAAAGGAAAGAAAAAAAGAAAAAAA
50811410 AAGAAAAAG
1 AAGAAAAAG
50811419 CAAAAATCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 14 0.44
29 18 0.56
ACGTcount: A:0.79, C:0.00, G:0.20, T:0.02
Consensus pattern (29 bp):
AAGAAAAAGGAAAGAAAAAAAGAAAAAAA
Found at i:50811408 original size:38 final size:38
Alignment explanation
Indices: 50811349--50811424 Score: 93
Period size: 38 Copynumber: 2.0 Consensus size: 38
50811339 CCCGAAGAAG
**
50811349 AAGGAAGATAAAGAAAGAAAAAGGAGAAAAAGAAAAAA
1 AAGGAAGATAAAGAAAGAAAAAAAAGAAAAAGAAAAAA
*
50811387 AAGGAAAGA-AAA-AAAGAAAAAAAAAGAAAAAGCAAAAA
1 AAGG-AAGATAAAGAAAG-AAAAAAAAGAAAAAGAAAAAA
50811425 TCAACAGTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 4 0.12
38 25 0.76
39 4 0.12
ACGTcount: A:0.78, C:0.01, G:0.20, T:0.01
Consensus pattern (38 bp):
AAGGAAGATAAAGAAAGAAAAAAAAGAAAAAGAAAAAA
Found at i:50811521 original size:16 final size:17
Alignment explanation
Indices: 50811502--50811546 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
50811492 TGCAGCGGCC
*
50811502 CCCAGCAGCAGT-TCGG
1 CCCAGCAGCAGTGACGG
*
50811518 CCCAACAGCAGTGACGG
1 CCCAGCAGCAGTGACGG
50811535 CCCAAGCAGCAG
1 CCC-AGCAGCAG
50811547 AAGGAAGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 11 0.46
17 6 0.25
18 7 0.29
ACGTcount: A:0.27, C:0.38, G:0.29, T:0.07
Consensus pattern (17 bp):
CCCAGCAGCAGTGACGG
Found at i:50811725 original size:9 final size:9
Alignment explanation
Indices: 50811697--50811740 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
50811687 AACATCCAGC
50811697 AGAAAAAAA
1 AGAAAAAAA
*
50811706 CAGAAAGAAA
1 -AGAAAAAAA
50811716 AGAAAAAAA
1 AGAAAAAAA
**
50811725 AGGGAAAAA
1 AGAAAAAAA
50811734 AGAAAAA
1 AGAAAAA
50811741 GGCCCATAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
9 20 0.71
10 8 0.29
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:50812279 original size:17 final size:18
Alignment explanation
Indices: 50812247--50812290 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
50812237 ATAATAATAA
50812247 TAAAATTTCCCGTGTTTC
1 TAAAATTTCCCGTGTTTC
*
50812265 TAAAATTT-TCGTGTTTC
1 TAAAATTTCCCGTGTTTC
*
50812282 AAAAATTTC
1 TAAAATTTC
50812291 GTTTTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (18 bp):
TAAAATTTCCCGTGTTTC
Found at i:50812290 original size:16 final size:16
Alignment explanation
Indices: 50812257--50812300 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
50812247 TAAAATTTCC
*
50812257 CGTGTTTCTAAAATTTT
1 CGTGTTTC-AAAAATTT
50812274 CGTGTTTCAAAAATTT
1 CGTGTTTCAAAAATTT
50812290 CGT-TTT-AAAAA
1 CGTGTTTCAAAAA
50812301 AAATTTTGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 5 0.19
15 3 0.12
16 10 0.38
17 8 0.31
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.45
Consensus pattern (16 bp):
CGTGTTTCAAAAATTT
Found at i:50812307 original size:34 final size:35
Alignment explanation
Indices: 50812266--50812344 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
50812256 CCGTGTTTCT
* * *
50812266 AAAATTTTCGTGTTTCAAAAAT-TTCGTTTTAAAA
1 AAAATTTTCGTGCTTCAAAAATCTTCGTGTAAAAA
*
50812300 AAAATTTT-GTGCTTCAAAATTCTTCGTGTAAAAA
1 AAAATTTTCGTGCTTCAAAAATCTTCGTGTAAAAA
*
50812334 AAAATTCTCGT
1 AAAATTTTCGT
50812345 ATTTTGATCG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
33 11 0.29
34 25 0.66
35 2 0.05
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (35 bp):
AAAATTTTCGTGCTTCAAAAATCTTCGTGTAAAAA
Found at i:50812332 original size:33 final size:34
Alignment explanation
Indices: 50812266--50812336 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
50812256 CCGTGTTTCT
* *
50812266 AAAATTTTCGTGTTTCAAAAATTTCGTTTTAAAA
1 AAAATTTTCGTGCTTCAAAAATTTCGTTGTAAAA
*
50812300 AAAATTTT-GTGCTTCAAAATTCTTCG-TGTAAAA
1 AAAATTTTCGTGCTTCAAAAAT-TTCGTTGTAAAA
50812333 AAAA
1 AAAA
50812337 ATTCTCGTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 21 0.64
34 12 0.36
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (34 bp):
AAAATTTTCGTGCTTCAAAAATTTCGTTGTAAAA
Found at i:50814731 original size:24 final size:24
Alignment explanation
Indices: 50814704--50814753 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
50814694 TTAAATAAAC
*
50814704 TTAAATGGAAA-GTCAATAGTTATG
1 TTAAAT-GAAAGGTCAAGAGTTATG
*
50814728 TTAAATGAAAGGTCGAGAGTTATG
1 TTAAATGAAAGGTCAAGAGTTATG
50814752 TT
1 TT
50814754 TTTAATGGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.34
Consensus pattern (24 bp):
TTAAATGAAAGGTCAAGAGTTATG
Found at i:50818505 original size:16 final size:17
Alignment explanation
Indices: 50818469--50818505 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
50818459 ATATATTTTT
50818469 ATTA-AATTATATTTAA
1 ATTATAATTATATTTAA
50818485 A-TATAATTA-ATTTAA
1 ATTATAATTATATTTAA
50818500 ATTATA
1 ATTATA
50818506 TTTTATAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATAATTATATTTAA
Found at i:50818586 original size:18 final size:17
Alignment explanation
Indices: 50818565--50818602 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
50818555 TATTAAAGAA
*
50818565 TTTTATTAAATTATATAT
1 TTTTACTAAATTATAT-T
50818583 TTTTACTAAATTATATT
1 TTTTACTAAATTATATT
50818600 TTT
1 TTT
50818603 AATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTACTAAATTATATT
Found at i:50818628 original size:120 final size:118
Alignment explanation
Indices: 50818446--50818886 Score: 751
Period size: 120 Copynumber: 3.7 Consensus size: 118
50818436 GAATATAATG
* *
50818446 ATTTGATTAAATTATATATTTTTATTAAATTATATTTAA-ATATAATTAATTTAAATTATATTTT
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATA-ATAATTATTTTAAATTATATTTT
50818510 ATAGTATTATATATTATGATTTTAGTAAATTC-TAAGAATATTTAATATTAAAGA
65 ATAGTATTATATATTATGATTTTAGTAAATTCATAAGAATATTTAATATT-AAGA
*
50818564 ATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATAATTATTTTAAATTATATTT
1 ATTTTATTAAATTATATATTTTTATTAAATTATA--TTTAATAATAATTATTTTAAATTATATTT
50818629 TATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAGA
64 TATAGTATTATATATTATGATTTTAGTAAATTCA--TAAGAATATTTAATATTAAGA
50818686 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
* *
50818751 TAGTATTATATATTATAATTTTATTAAATTCATATAAGAATATTTAATATTAAGA
66 TAGTATTATATATTATGATTTTAGTAAATTC--ATAAGAATATTTAATATTAAGA
50818806 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
50818871 TAGTATTATATATTAT
66 TAGTATTATATATTAT
50818887 NNNNNNNNNN
Statistics
Matches: 309, Mismatches: 6, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
118 32 0.10
120 221 0.72
121 1 0.00
122 38 0.12
123 17 0.06
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (118 bp):
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAATTATATTTTA
TAGTATTATATATTATGATTTTAGTAAATTCATAAGAATATTTAATATTAAGA
Found at i:50818836 original size:56 final size:55
Alignment explanation
Indices: 50818649--50818840 Score: 197
Period size: 56 Copynumber: 3.3 Consensus size: 55
50818639 TATATTATGA
* *
50818649 TTTTAGTAAATTCATTTAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
1 TTTTATTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
* * * * * *
50818705 TTTTATTAAATTATATTTAATAATAATT-ATTTTAAATTATATTTTATAGTATTATATATTATAA
1 TTTTATTAAATTATA--TAAGAATATTTAATATT-AA-GA-ATTTTAT--TA-AAT-TA-TATAT
50818769 TTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
1 TTTTATTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
50818825 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
50818841 TTAATAATAA
Statistics
Matches: 110, Mismatches: 14, Indels: 25
0.74 0.09 0.17
Matches are distributed among these distances:
55 6 0.05
56 31 0.28
57 13 0.12
58 3 0.03
59 9 0.08
61 9 0.08
62 3 0.03
63 13 0.12
64 20 0.18
65 3 0.03
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (55 bp):
TTTTATTAAATTATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
Found at i:50820288 original size:18 final size:17
Alignment explanation
Indices: 50820261--50820295 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50820251 NNNNNNNTAA
*
50820261 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
50820279 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
50820296 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:50824426 original size:91 final size:91
Alignment explanation
Indices: 50824301--50824516 Score: 432
Period size: 91 Copynumber: 2.4 Consensus size: 91
50824291 AATTATAACC
50824301 ATCGAAATTGAAACTTGATTGTTTATACATAATTTACAGCATTTACAGCATTTCATTTCATTTTA
1 ATCGAAATTGAAACTTGATTGTTTATACATAATTTACAGCATTTACAGCATTTCATTTCATTTTA
50824366 AATTTGGACATTATATAACCATCGAA
66 AATTTGGACATTATATAACCATCGAA
50824392 ATCGAAATTGAAACTTGATTGTTTATACATAATTTACAGCATTTACAGCATTTCATTTCATTTTA
1 ATCGAAATTGAAACTTGATTGTTTATACATAATTTACAGCATTTACAGCATTTCATTTCATTTTA
50824457 AATTTGGACATTATATAACCATCGAA
66 AATTTGGACATTATATAACCATCGAA
50824483 ATCGAAATTGAAACTTGATTGTTTATACATAATT
1 ATCGAAATTGAAACTTGATTGTTTATACATAATT
50824517 AACCCTTAAT
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 125 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (91 bp):
ATCGAAATTGAAACTTGATTGTTTATACATAATTTACAGCATTTACAGCATTTCATTTCATTTTA
AATTTGGACATTATATAACCATCGAA
Found at i:50831448 original size:32 final size:32
Alignment explanation
Indices: 50831407--50831468 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
50831397 CATCTATTTG
50831407 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
50831439 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
50831469 ACCAAGAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:50831718 original size:30 final size:30
Alignment explanation
Indices: 50831684--50831744 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
50831674 AAACTCTAAT
50831684 GCGGTGACGATACTGTAGGAGAGGTCCTGC
1 GCGGTGACGATACTGTAGGAGAGGTCCTGC
*
50831714 GCGGTTACGATACTGTAGGAGAGGTCCTGC
1 GCGGTGACGATACTGTAGGAGAGGTCCTGC
50831744 G
1 G
50831745 ACAAAATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.39, T:0.21
Consensus pattern (30 bp):
GCGGTGACGATACTGTAGGAGAGGTCCTGC
Found at i:50845160 original size:29 final size:30
Alignment explanation
Indices: 50845128--50845186 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50845118 TAAAATAATC
50845128 ATTTAATATT-ATC-ACTTAATTAAATTAAA
1 ATTTAATATTAATCTA-TTAATTAAATTAAA
* *
50845157 ATTTATTATTAATCTATTAATTAATTTAAA
1 ATTTAATATTAATCTATTAATTAAATTAAA
50845187 TTAACGTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 9 0.35
30 16 0.62
31 1 0.04
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (30 bp):
ATTTAATATTAATCTATTAATTAAATTAAA
Found at i:50848541 original size:47 final size:47
Alignment explanation
Indices: 50848467--50848570 Score: 172
Period size: 47 Copynumber: 2.2 Consensus size: 47
50848457 ACTAGCATTA
* *
50848467 ACTTTAAGTAATCTCCCTTTGACATTTTACAACAAAAACTCATCACC
1 ACTTCAAGTAATCTCCCCTTGACATTTTACAACAAAAACTCATCACC
*
50848514 ACTTCAAGTAATCTCCCCTTGACATTTTACAACAAAAACTTATCACC
1 ACTTCAAGTAATCTCCCCTTGACATTTTACAACAAAAACTCATCACC
*
50848561 ACGTCAAGTA
1 ACTTCAAGTA
50848571 GGAGTAAGCA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.37, C:0.28, G:0.06, T:0.30
Consensus pattern (47 bp):
ACTTCAAGTAATCTCCCCTTGACATTTTACAACAAAAACTCATCACC
Found at i:50850092 original size:20 final size:20
Alignment explanation
Indices: 50850067--50850106 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50850057 CGTAAAATGA
*
50850067 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
50850087 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
50850107 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:50850101 original size:34 final size:35
Alignment explanation
Indices: 50850053--50850118 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
50850043 AGTAAAATAA
*
50850053 TTTCCGTAAAATGATTT-CTGGAAAATGTTTTACT
1 TTTCCGTAAAATGATTTACTGGAAAATATTTTACT
*
50850087 TTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTCCGTAAAATGATTTACTGGAAAATATTTT
50850119 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (35 bp):
TTTCCGTAAAATGATTTACTGGAAAATATTTTACT
Found at i:50850221 original size:20 final size:20
Alignment explanation
Indices: 50850196--50850247 Score: 56
Period size: 18 Copynumber: 2.7 Consensus size: 20
50850186 GGAAAATTTG
50850196 TTTTTACATATATT-AATAAA
1 TTTTTACATATATTAAAT-AA
* *
50850216 TTTTT--ATATTTTAAATTA
1 TTTTTACATATATTAAATAA
50850234 TTTTTACATATATT
1 TTTTTACATATATT
50850248 GCAATGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
18 12 0.46
19 3 0.12
20 11 0.42
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTACATATATTAAATAA
Found at i:50863196 original size:9 final size:9
Alignment explanation
Indices: 50863179--50863215 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
50863169 TGAGTTTTCA
50863179 AATTCGAAT
1 AATTCGAAT
*
50863188 AACTCGAAT
1 AATTCGAAT
50863197 AATTCGAAT
1 AATTCGAAT
50863206 AATTCGAAT
1 AATTCGAAT
50863215 A
1 A
50863216 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:50875382 original size:38 final size:38
Alignment explanation
Indices: 50875340--50875414 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
50875330 TCTTGTATTA
*
50875340 GGATCCATTTTGGTAAAGTAGTTG-CTCTTTTTTCCCTG
1 GGATCCATTTTGGTAAAGTAATTGCCT-TTTTTTCCCTG
50875378 GGATCCATTTTGGTAAAGTAATTGCCTTTTTTTCCCT
1 GGATCCATTTTGGTAAAGTAATTGCCTTTTTTTCCCT
50875415 TTCCTCAACC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 33 0.94
39 2 0.06
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.45
Consensus pattern (38 bp):
GGATCCATTTTGGTAAAGTAATTGCCTTTTTTTCCCTG
Found at i:50877015 original size:16 final size:16
Alignment explanation
Indices: 50876991--50877045 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
50876981 CAAGAATACT
*
50876991 ATTACAGTTCTATTCC
1 ATTACAGTTCTATTCA
* *
50877007 ATTATAGTTCTACTCA
1 ATTACAGTTCTATTCA
* *
50877023 ATTACAGCTCTATTCT
1 ATTACAGTTCTATTCA
50877039 ATTACAG
1 ATTACAG
50877046 CGAACCAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.42
Consensus pattern (16 bp):
ATTACAGTTCTATTCA
Found at i:50877220 original size:24 final size:23
Alignment explanation
Indices: 50877189--50877337 Score: 86
Period size: 26 Copynumber: 6.2 Consensus size: 23
50877179 AAAACAAAAT
* *
50877189 AATATATAGAACAATTTGAAGTA
1 AATATATAAAACAATTTAAAGTA
50877212 AATAGTATAAAACAATTTAAAGTA
1 AATA-TATAAAACAATTTAAAGTA
* * *
50877236 AATAATATGTAAACAAATTAAAATAAA
1 AAT-ATAT-AAAACAATTTAAAGT--A
* * * *
50877263 CAACATACAAAAAAATTTAAAATA
1 -AATATATAAAACAATTTAAAGTA
* *
50877287 AATAACATATAAGACAATTTAAAAT-
1 AAT---ATATAAAACAATTTAAAGTA
* *
50877312 AATATATAAAA-AGTTTAAAATA
1 AATATATAAAACAATTTAAAGTA
50877334 AATA
1 AATA
50877338 ATATGTAAAA
Statistics
Matches: 100, Mismatches: 16, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
21 9 0.09
22 11 0.11
23 6 0.06
24 24 0.24
25 16 0.16
26 28 0.28
27 4 0.04
28 2 0.02
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (23 bp):
AATATATAAAACAATTTAAAGTA
Found at i:50877289 original size:51 final size:50
Alignment explanation
Indices: 50877211--50877459 Score: 155
Period size: 51 Copynumber: 4.7 Consensus size: 50
50877201 AATTTGAAGT
* * *
50877211 AAATAGTATAAAACAATTTAAAGTAAATAATATGTAAACAAATTAAAATAA
1 AAATA-TACAAAAAAATTTAAAATAAATAATATGTAAACAAATTAAAATAA
* * * *
50877262 ACAACATACAAAAAAATTTAAAATAAATAACATATAAGACAATTTAAAAT--
1 A-AATATACAAAAAAATTTAAAATAAATAATATGTAA-ACAAATTAAAATAA
* * * *
50877312 -AATATA-TAAAAAGTTTAAAATAAATAATATGTAAAAAGAAGTTTCAAATAA
1 AAATATACAAAAAAATTTAAAATAAATAATATGTAAACA-AA--TTAAAATAA
* * * *
50877363 ATAATATACAAAACAGTTTAAAAATAAATGATATGTATAAAAACAATTTAAAATAA
1 A-AATATACAAAAAAATTT-AAAATAAATAATATG--T--AAACAAATTAAAATAA
* * * *
50877419 ATAATATATATATAACAGTTTAAAAATAAATAATATATAAA
1 A-AATATACA-A-AAAAATTT-AAAATAAATAATATGTAAA
50877460 AATGAATAAT
Statistics
Matches: 157, Mismatches: 24, Indels: 31
0.74 0.11 0.15
Matches are distributed among these distances:
46 2 0.01
47 25 0.16
48 5 0.03
49 6 0.04
51 27 0.17
52 14 0.09
53 6 0.04
54 11 0.07
55 14 0.09
56 18 0.11
57 2 0.01
58 23 0.15
59 4 0.03
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (50 bp):
AAATATACAAAAAAATTTAAAATAAATAATATGTAAACAAATTAAAATAA
Found at i:50877328 original size:21 final size:22
Alignment explanation
Indices: 50877286--50877334 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
50877276 AATTTAAAAT
50877286 AAATAACATATAAGACAATTTA
1 AAATAACATATAAGACAATTTA
*
50877308 AAATAATATATAA-A-AAGTTTA
1 AAATAACATATAAGACAA-TTTA
50877329 AAATAA
1 AAATAA
50877335 ATAATATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 11 0.44
22 12 0.48
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (22 bp):
AAATAACATATAAGACAATTTA
Found at i:50877336 original size:25 final size:24
Alignment explanation
Indices: 50877185--50877574 Score: 188
Period size: 25 Copynumber: 15.2 Consensus size: 24
50877175 AAGCAAAACA
* *
50877185 AAATAATATATAGAACAATTTGAAGT
1 AAATAATATATA-AA-AATTTAAAAT
* *
50877211 AAATAGTATA-AAACAATTTAAAGT
1 AAATAATATATAAA-AATTTAAAAT
* *
50877235 AAATAATATGTAAACAAATTAAAAT
1 AAATAATATATAAA-AATTTAAAAT
* * *
50877260 AAACAACATACAAAAAAATTTAAAAT
1 AAA-TA-ATATATAAAAATTTAAAAT
*
50877286 AAATAACATATAAGACAATTTAAAAT
1 AAATAATATATAA-A-AATTTAAAAT
*
50877312 -AAT-ATATA-AAAAGTTTAAAAT
1 AAATAATATATAAAAATTTAAAAT
* *
50877333 AAATAATATGTAAAAAGAAGTTTCAAAT
1 AAATAATA--TATAAA-AA-TTTAAAAT
*
50877361 AAATAATATACAAAACAGTTTAAAAAT
1 AAATAATATATAAAA-A-TTT-AAAAT
*
50877388 AAATGATATGTATAAAAACAATTTAAAAT
1 AAAT-A-A--TATATAAA-AATTTAAAAT
50877417 AAATAATATATATATAACAGTTTAAAAAT
1 AAATAATATATA-A-AA-A-TTT-AAAAT
*
50877446 AAATAATATATAAAAA--T-GAAT
1 AAATAATATATAAAAATTTAAAAT
* *
50877467 -AATAGT-T-TGAAATAGTTTAAAAT
1 AAATAATATAT-AAA-AATTTAAAAT
* * * * *
50877490 ACATTATATGTGAAAAACTTGAAAT
1 AAATAATATAT-AAAAATTTAAAAT
*
50877515 AAATAATAATAAAAAAATTTAAAAT
1 AAATAAT-ATATAAAAATTTAAAAT
50877540 AAATAATATATGAGAAAAAGGTTTAAAAT
1 AAATAATATAT---AAAAA--TTTAAAAT
50877569 AAATAA
1 AAATAA
50877575 ATGAATAACA
Statistics
Matches: 286, Mismatches: 40, Indels: 73
0.72 0.10 0.18
Matches are distributed among these distances:
18 1 0.00
19 4 0.01
20 6 0.02
21 12 0.04
22 5 0.02
23 9 0.03
24 35 0.12
25 60 0.21
26 55 0.19
27 25 0.09
28 21 0.07
29 41 0.14
30 3 0.01
31 8 0.03
32 1 0.00
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (24 bp):
AAATAATATATAAAAATTTAAAAT
Found at i:50877354 original size:28 final size:28
Alignment explanation
Indices: 50877313--50877461 Score: 146
Period size: 29 Copynumber: 5.4 Consensus size: 28
50877303 ATTTAAAATA
50877313 ATATAT-AAAAAGTTTAAAATAAATAAT
1 ATATATAAAAAAGTTTAAAATAAATAAT
* *
50877340 ATGTA-AAAAGAAGTTTCAAATAAAT-A-
1 ATATATAAAA-AAGTTTAAAATAAATAAT
* * *
50877366 ATATACAAAACAGTTTAAAAATAAATGAT
1 ATATATAAAAAAGTTT-AAAATAAATAAT
* *
50877395 ATGTATAAAAACAATTTAAAATAAATAAT
1 ATATATAAAAA-AGTTTAAAATAAATAAT
* *
50877424 ATATATATAACAGTTTAAAAATAAATAAT
1 ATATATAAAAAAGTTT-AAAATAAATAAT
50877453 ATATA-AAAA
1 ATATATAAAA
50877462 TGAATAATAG
Statistics
Matches: 99, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
26 9 0.09
27 20 0.20
28 22 0.22
29 44 0.44
30 4 0.04
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.30
Consensus pattern (28 bp):
ATATATAAAAAAGTTTAAAATAAATAAT
Found at i:50877416 original size:29 final size:28
Alignment explanation
Indices: 50877308--50877461 Score: 144
Period size: 28 Copynumber: 5.6 Consensus size: 28
50877298 AGACAATTTA
50877308 AAATA-ATATAT-AAAA-AGTTTAAAAT
1 AAATATATATATAAAAACAGTTTAAAAT
* * *
50877333 AAATA-ATATGTAAAAAGAAGTTTCAAAT
1 AAATATATATATAAAAA-CAGTTTAAAAT
*
50877361 AAATA-ATATA-CAAAACAGTTTAAAAAT
1 AAATATATATATAAAAACAGTTT-AAAAT
* *
50877388 AAATGATATGTATAAAAACAATTTAAAAT
1 AAAT-ATATATATAAAAACAGTTTAAAAT
*
50877417 AAATA-ATATATATATAACAGTTTAAAAAT
1 AAATATATATATA-AAAACAGTTT-AAAAT
50877446 AAATA-ATATATAAAAA
1 AAATATATATATAAAAA
50877462 TGAATAATAG
Statistics
Matches: 107, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
25 10 0.09
26 9 0.08
27 18 0.17
28 31 0.29
29 30 0.28
30 9 0.08
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (28 bp):
AAATATATATATAAAAACAGTTTAAAAT
Found at i:50877543 original size:29 final size:29
Alignment explanation
Indices: 50877511--50877582 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
50877501 GAAAAACTTG
*
50877511 AAATAAATAATAATAAAAAAATTTAAAAT
1 AAATAAATAATAAGAAAAAAATTTAAAAT
* **
50877540 AAAT-AATATATGAGAAAAAGGTTTAAAAT
1 AAATAAATA-ATAAGAAAAAAATTTAAAAT
50877569 AAATAAATGAATAA
1 AAATAAAT-AATAA
50877583 CAAATTCGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
28 4 0.11
29 24 0.69
30 6 0.17
31 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (29 bp):
AAATAAATAATAAGAAAAAAATTTAAAAT
Found at i:50880580 original size:12 final size:11
Alignment explanation
Indices: 50880552--50880585 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
50880542 TTTGTTTGAG
50880552 ATAAAAATTAA
1 ATAAAAATTAA
*
50880563 ATAAAAATTAT
1 ATAAAAATTAA
*
50880574 ATCAAAATTAA
1 ATAAAAATTAA
50880585 A
1 A
50880586 ATTATTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (11 bp):
ATAAAAATTAA
Found at i:50880598 original size:16 final size:17
Alignment explanation
Indices: 50880561--50880603 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
50880551 GATAAAAATT
*
50880561 AAATAAAAATTATATCA
1 AAATTAAAATTATATCA
*
50880578 AAATTAAAATTAT-TTA
1 AAATTAAAATTATATCA
*
50880594 AAATTTAAAT
1 AAATTAAAAT
50880604 AAATAGATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AAATTAAAATTATATCA
Found at i:50882960 original size:5 final size:6
Alignment explanation
Indices: 50882924--50882959 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
50882914 AGAGAGAGAA
50882924 AAAAAG ATAAAAG ATAAAAG AAAAAG AAAAAG AAAA
1 AAAAAG A-AAAAG A-AAAAG AAAAAG AAAAAG AAAA
50882960 GGAGGGTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 16 0.55
7 13 0.45
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.06
Consensus pattern (6 bp):
AAAAAG
Found at i:50883639 original size:17 final size:17
Alignment explanation
Indices: 50883593--50883639 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
50883583 CGTTAGCAAT
50883593 AAAATTACAAAAACTTTA
1 AAAATT-CAAAAACTTTA
*
50883611 AAAATTCCAAAA-TATTA
1 AAAATTCAAAAACT-TTA
*
50883628 TAAATTCAAAAA
1 AAAATTCAAAAA
50883640 AATAAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 1 0.04
17 18 0.72
18 6 0.24
ACGTcount: A:0.62, C:0.11, G:0.00, T:0.28
Consensus pattern (17 bp):
AAAATTCAAAAACTTTA
Found at i:50891625 original size:17 final size:17
Alignment explanation
Indices: 50891600--50891642 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
50891590 GCTATGGTGT
50891600 GTCCACAACATAAGCAG
1 GTCCACAACATAAGCAG
* *
50891617 GTCCGCAACATAAGCAT
1 GTCCACAACATAAGCAG
*
50891634 GACCACAAC
1 GTCCACAAC
50891643 CAATACGGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.40, C:0.33, G:0.16, T:0.12
Consensus pattern (17 bp):
GTCCACAACATAAGCAG
Found at i:50894207 original size:33 final size:32
Alignment explanation
Indices: 50894160--50894228 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 32
50894150 AATAATTTAC
*
50894160 TTTTCTGGTATTTGG-ATGAATTTGTGTAAAATA
1 TTTTCTGGTATTTGGCA-GAATTTCTG-AAAATA
* * *
50894193 TTTTCTGTTGTTTGGCAGATTTTCTGAAAATA
1 TTTTCTGGTATTTGGCAGAATTTCTGAAAATA
50894225 TTTT
1 TTTT
50894229 AGAAAAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
32 10 0.32
33 20 0.65
34 1 0.03
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (32 bp):
TTTTCTGGTATTTGGCAGAATTTCTGAAAATA
Found at i:50896237 original size:23 final size:23
Alignment explanation
Indices: 50896161--50896237 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
50896151 GTAGTTCTAA
* * *
50896161 AGAGCCATTAACGGGAAGCTCCGG
1 AGAGCCA-TATCGAGAAGCTCCAG
* * *
50896185 ATAGCCATATATCGAGAAGTTCAAG
1 AGAGCC--ATATCGAGAAGCTCCAG
*
50896210 CGAGCCATATCGAGAAGCTCCAG
1 AGAGCCATATCGAGAAGCTCCAG
50896233 AGAGC
1 AGAGC
50896238 AATTAATTAG
Statistics
Matches: 40, Mismatches: 11, Indels: 5
0.71 0.20 0.09
Matches are distributed among these distances:
23 19 0.47
24 5 0.12
25 15 0.38
26 1 0.03
ACGTcount: A:0.34, C:0.23, G:0.27, T:0.16
Consensus pattern (23 bp):
AGAGCCATATCGAGAAGCTCCAG
Found at i:50896269 original size:26 final size:26
Alignment explanation
Indices: 50896223--50896291 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
50896213 GCCATATCGA
* *
50896223 GAAGCTC-CAGAGAGCAATTAAT-TAG
1 GAAGCTCACAAAGAGCCATTAATCT-G
*
50896248 GAAGCTCACAAAGAGCCTTTAATCTG
1 GAAGCTCACAAAGAGCCATTAATCTG
* *
50896274 GAGGCTCACGAAGAGCCA
1 GAAGCTCACAAAGAGCCA
50896292 AATGTCGGGA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
25 7 0.19
26 28 0.78
27 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (26 bp):
GAAGCTCACAAAGAGCCATTAATCTG
Found at i:50896718 original size:20 final size:20
Alignment explanation
Indices: 50896679--50896718 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
50896669 CGAATATAAT
*
50896679 AAATATATTTTTTATTTTTA
1 AAATATATTTTTTATGTTTA
50896699 AAATA-ATTTTTTAATGTTTA
1 AAATATATTTTTT-ATGTTTA
50896719 TTTTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (20 bp):
AAATATATTTTTTATGTTTA
Found at i:50897205 original size:21 final size:21
Alignment explanation
Indices: 50897181--50897220 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50897171 GAAAATTTAG
*
50897181 CTCAATTTAATACAATTCATA
1 CTCAATTCAATACAATTCATA
*
50897202 CTCAATTCAATCCAATTCA
1 CTCAATTCAATACAATTCA
50897221 CATCTTAGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (21 bp):
CTCAATTCAATACAATTCATA
Found at i:50900156 original size:28 final size:28
Alignment explanation
Indices: 50900089--50900150 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
50900079 GCTGATGGAC
* *
50900089 AGAGAG-GAAGGAGAACGACTGCTGTGA
1 AGAGAGTGAAGGAGAATGACTGCTATGA
50900116 AGAGAGTGAAGGAGAATGACTGCTATGA
1 AGAGAGTGAAGGAGAATGACTGCTATGA
*
50900144 TGAGAGT
1 AGAGAGT
50900151 AGAGGAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.37, C:0.08, G:0.39, T:0.16
Consensus pattern (28 bp):
AGAGAGTGAAGGAGAATGACTGCTATGA
Found at i:50900161 original size:28 final size:28
Alignment explanation
Indices: 50900089--50900161 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
50900079 GCTGATGGAC
* * *
50900089 AGAGAG-GAAGGAGAACGACTGCTGTGA
1 AGAGAGTGAAGGAAAATGACTGCTATGA
*
50900116 AGAGAGTGAAGGAGAATGACTGCTATGA
1 AGAGAGTGAAGGAAAATGACTGCTATGA
*
50900144 TGAGAGT-AGAGGAAAATG
1 AGAGAGTGA-AGGAAAATG
50900162 GAAAATGTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.40, C:0.07, G:0.38, T:0.15
Consensus pattern (28 bp):
AGAGAGTGAAGGAAAATGACTGCTATGA
Found at i:50902272 original size:27 final size:27
Alignment explanation
Indices: 50902241--50902306 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
50902231 TGTAACCTAA
* * * *
50902241 TGTTTAATGTCTTGACGAGCTACCCCG
1 TGTTTAATATCCTGACAAACTACCCCG
*
50902268 TGTTTATTATCCTGACAAACTACCCCG
1 TGTTTAATATCCTGACAAACTACCCCG
*
50902295 TGTTTACTATCC
1 TGTTTAATATCC
50902307 CGGTAGACTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.36
Consensus pattern (27 bp):
TGTTTAATATCCTGACAAACTACCCCG
Found at i:50905127 original size:42 final size:39
Alignment explanation
Indices: 50905068--50905206 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 39
50905058 ACCCCTTGGG
50905068 GGAATCAGCACTTAGCAACCCCCTTCACATTTCAGATGCGGT
1 GGAATCAGCACTTAGCAACCCCCTTCA-ATTT-AGAT-CGGT
* * * *
50905110 GGAATCAGCACTTAGCAA-CCAC--CAA-ATGGGTCGG-
1 GGAATCAGCACTTAGCAACCCCCTTCAATTTAGATCGGT
*
50905144 GGAATCAGCACTTAGCAACCCCCTTTCAGATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCC-TTCA-ATTT-AGAT-CGGT
50905187 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
50905207 ACCAATGAAT
Statistics
Matches: 79, Mismatches: 9, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
34 18 0.23
35 6 0.08
36 2 0.03
37 1 0.01
38 3 0.04
39 3 0.04
40 1 0.01
41 4 0.05
42 21 0.27
43 20 0.25
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (39 bp):
GGAATCAGCACTTAGCAACCCCCTTCAATTTAGATCGGT
Found at i:50905222 original size:76 final size:76
Alignment explanation
Indices: 50905066--50905241 Score: 255
Period size: 76 Copynumber: 2.3 Consensus size: 76
50905056 CAACCCCTTG
* * *
50905066 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTCAGATGCGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
** *
50905131 CCAAATGGGTC
66 CCAAATGAATA
*
50905142 GGGGAATCAGCACTTAGCAACCCCCTTTCAGATTTAAAATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCC-TTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
50905207 ACC-AATGAATA
65 ACCAAATGAATA
**
50905218 GGGGAATCAGCACACAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
50905242 TTTATATGCA
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
76 52 0.58
77 38 0.42
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.18
Consensus pattern (76 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
CCAAATGAATA
Found at i:50907107 original size:22 final size:21
Alignment explanation
Indices: 50907082--50907149 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
50907072 ATATAATAGT
*
50907082 AAAATGGAAACAAAACAACATC
1 AAAATGGAAAC-AAACAACAAC
* *
50907104 AAAATGGCATCAAACAACAAC
1 AAAATGGAAACAAACAACAAC
50907125 AAAAT--AACATCAAACAACAAC
1 AAAATGGAA-A-CAAACAACAAC
50907146 AAAA
1 AAAA
50907150 ACTAGCAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
21 29 0.74
22 9 0.23
ACGTcount: A:0.65, C:0.21, G:0.06, T:0.09
Consensus pattern (21 bp):
AAAATGGAAACAAACAACAAC
Found at i:50907120 original size:21 final size:21
Alignment explanation
Indices: 50907094--50907149 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
50907084 AATGGAAACA
* **
50907094 AAACAACATCAAAATGGCATC
1 AAACAACAACAAAATAACATC
50907115 AAACAACAACAAAATAACATC
1 AAACAACAACAAAATAACATC
50907136 AAACAACAACAAAA
1 AAACAACAACAAAA
50907150 ACTAGCAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.64, C:0.23, G:0.04, T:0.09
Consensus pattern (21 bp):
AAACAACAACAAAATAACATC
Found at i:50907748 original size:16 final size:16
Alignment explanation
Indices: 50907727--50907760 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
50907717 TTAAGTAGAG
*
50907727 AAAATTATTTAATTAA
1 AAAATTAATTAATTAA
50907743 AAAATTAATTAATTAA
1 AAAATTAATTAATTAA
50907759 AA
1 AA
50907761 TCAATTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATTAATTAATTAA
Found at i:50917169 original size:16 final size:17
Alignment explanation
Indices: 50917148--50917223 Score: 120
Period size: 17 Copynumber: 4.6 Consensus size: 17
50917138 GTTTGCAGAA
*
50917148 TAGAGATGTATT-GGAT
1 TAGAGGTGTATTGGGAT
*
50917164 TAGAGATGTATTGGGAT
1 TAGAGGTGTATTGGGAT
50917181 TAGAGGTGTATTGGGAT
1 TAGAGGTGTATTGGGAT
50917198 TAGAGGTGTATT-GGAT
1 TAGAGGTGTATTGGGAT
50917214 TAGAGGTGTA
1 TAGAGGTGTA
50917224 ATAGCTAATC
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
16 26 0.45
17 32 0.55
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.36
Consensus pattern (17 bp):
TAGAGGTGTATTGGGAT
Found at i:50917191 original size:33 final size:33
Alignment explanation
Indices: 50917148--50917223 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 33
50917138 GTTTGCAGAA
*
50917148 TAGAGATGTATT-GGATTAGAGATGTATTGGGAT
1 TAGAGGTGTATTGGGATTAGAGATGTATT-GGAT
*
50917181 TAGAGGTGTATTGGGATTAGAGGTGTATTGGAT
1 TAGAGGTGTATTGGGATTAGAGATGTATTGGAT
50917214 TAGAGGTGTA
1 TAGAGGTGTA
50917224 ATAGCTAATC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
33 25 0.62
34 15 0.38
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.36
Consensus pattern (33 bp):
TAGAGGTGTATTGGGATTAGAGATGTATTGGAT
Done.