Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 177 of 313
Found at i:55028061 original size:26 final size:27
Alignment explanation
Indices: 55028010--55028066 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
55028000 ATAGAATAGC
* *
55028010 AAAACGAAAACAGGGGAGAAAGGAAAG
1 AAAAAGAAAACAGGGAAGAAAGGAAAG
55028037 AAAAAGAAAA-AGGGAAGGAAA-GAAAG
1 AAAAAGAAAACAGGGAA-GAAAGGAAAG
55028063 AAAA
1 AAAA
55028067 TTTGAGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.67, C:0.04, G:0.30, T:0.00
Consensus pattern (27 bp):
AAAAAGAAAACAGGGAAGAAAGGAAAG
Found at i:55028963 original size:11 final size:11
Alignment explanation
Indices: 55028947--55028972 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
55028937 TTGCTGGATG
55028947 ATATTTTGGTT
1 ATATTTTGGTT
55028958 ATATTTTGGTT
1 ATATTTTGGTT
55028969 ATAT
1 ATAT
55028973 ACAGATGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (11 bp):
ATATTTTGGTT
Found at i:55031573 original size:15 final size:15
Alignment explanation
Indices: 55031534--55031586 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 15
55031524 GAACATTTGG
55031534 AATTTAATTAGATAAAA
1 AATTT-ATTA-ATAAAA
55031551 AACTTTTATTAATAAAA
1 AA--TTTATTAATAAAA
*
55031568 AATTTATTTATAAATA
1 AATTTATTAATAAA-A
55031584 AAT
1 AAT
55031587 CATTGCAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 11 0.34
16 4 0.12
17 10 0.31
18 4 0.12
19 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (15 bp):
AATTTATTAATAAAA
Found at i:55031660 original size:22 final size:20
Alignment explanation
Indices: 55031617--55031655 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
55031607 TAATTTAAAA
55031617 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
*
55031637 TATATAAATTTATTAATAT
1 TATAAAAATTTATTAATAT
55031656 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:55031760 original size:14 final size:15
Alignment explanation
Indices: 55031738--55031814 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
55031728 CAATCAAACA
55031738 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
55031752 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
55031767 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
55031787 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
55031801 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
55031815 ACTGCCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:55031779 original size:20 final size:20
Alignment explanation
Indices: 55031754--55031793 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
55031744 AATATTTTCC
*
55031754 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
55031774 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
55031794 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:55031799 original size:34 final size:35
Alignment explanation
Indices: 55031742--55031808 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
55031732 CAAACACCAG
*
55031742 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
55031777 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
55031809 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:55031815 original size:14 final size:14
Alignment explanation
Indices: 55031777--55031816 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
55031767 ACAGAAAAGT
*
55031777 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
55031791 AAATCATTTTACGG
1 AAAACATTTTACAG
55031805 AAAACATTTTAC
1 AAAACATTTTAC
55031817 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:55032364 original size:25 final size:25
Alignment explanation
Indices: 55032335--55032418 Score: 132
Period size: 25 Copynumber: 3.4 Consensus size: 25
55032325 GAACTTTAGT
*
55032335 GTGCTCTCTGATTATTAGCACATCA
1 GTGCTCTCTGATTATTAGCACGTCA
*
55032360 ATGCTCTCTGATTATTAGCACGTCA
1 GTGCTCTCTGATTATTAGCACGTCA
* *
55032385 GTGCTCTCTGAGTACTAGCACGTCA
1 GTGCTCTCTGATTATTAGCACGTCA
55032410 GTGCTCTCT
1 GTGCTCTCT
55032419 ATTTAGCACT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 54 1.00
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (25 bp):
GTGCTCTCTGATTATTAGCACGTCA
Found at i:55038529 original size:20 final size:20
Alignment explanation
Indices: 55038504--55038541 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
55038494 AAAGGTTAAC
55038504 TTAGTAAAATAATAATAATG
1 TTAGTAAAATAATAATAATG
* *
55038524 TTAGTATAATGATAATAA
1 TTAGTAAAATAATAATAA
55038542 AATAAAAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGTAAAATAATAATAATG
Found at i:55039481 original size:41 final size:42
Alignment explanation
Indices: 55039403--55039502 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 42
55039393 CTATATGATT
* * *
55039403 AGCACTAAGTGTGCG-AATTAAATGATGAGGTTGAATAA-CG
1 AGCACTAAGTGTGCGAAACTAAATAATGAGGTTAAATAATCG
* *
55039443 AGCACTAAGTGTGCGAAACTAAATAATGATGTTAAATAATTG
1 AGCACTAAGTGTGCGAAACTAAATAATGAGGTTAAATAATCG
55039485 -GCACTAAGTGTGCGAAAC
1 AGCACTAAGTGTGCGAAAC
55039503 CGAGATCAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
40 15 0.28
41 37 0.70
42 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (42 bp):
AGCACTAAGTGTGCGAAACTAAATAATGAGGTTAAATAATCG
Found at i:55056655 original size:21 final size:20
Alignment explanation
Indices: 55056624--55056663 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
55056614 TATTTAAAAA
*
55056624 ATATTTTTAATTATTTTTAT
1 ATATTTTTAATAATTTTTAT
55056644 ATATTTTCTAATAATTTTTA
1 ATATTTT-TAATAATTTTTA
55056664 GTCTAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (20 bp):
ATATTTTTAATAATTTTTAT
Found at i:55057134 original size:17 final size:18
Alignment explanation
Indices: 55057112--55057156 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
55057102 TTATGAATTA
55057112 AAAAATAATTATA-AAAG
1 AAAAATAATTATACAAAG
*
55057129 AAAAATAGTTATACTAAAG
1 AAAAATAATTATAC-AAAG
*
55057148 ATAAATAAT
1 AAAAATAAT
55057157 ATGAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 12 0.52
19 11 0.48
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (18 bp):
AAAAATAATTATACAAAG
Found at i:55059012 original size:6 final size:6
Alignment explanation
Indices: 55058988--55059025 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
55058978 ACAAAATTAG
55058988 AAAG-A AAAGAAA GAAAGAA AAAGAA AAAGAA AAAGAA A
1 AAAGAA AAAG-AA -AAAGAA AAAGAA AAAGAA AAAGAA A
55059026 GAAAACCCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 4 0.13
6 19 0.63
7 3 0.10
8 4 0.13
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:55059025 original size:35 final size:34
Alignment explanation
Indices: 55058948--55059030 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 34
55058938 GCAAAAAAGT
**
55058948 AATA-AAAGAAAGAGAAAGAAAGAAAGCCAAACAA
1 AATAGAAAGAAA-AGAAAGAAAGAAAGAAAAACAA
*
55058982 AATTAGAAAGAAAAGAAAGAAAGAAAAAGAAAAAGAA
1 AA-TAGAAAGAAAAGAAAGAAAG--AAAGAAAAACAA
55059019 AA-AGAAAGAAAA
1 AATAGAAAGAAAA
55059031 CCCACGGCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
34 2 0.05
35 22 0.52
36 7 0.17
37 11 0.26
ACGTcount: A:0.75, C:0.04, G:0.18, T:0.04
Consensus pattern (34 bp):
AATAGAAAGAAAAGAAAGAAAGAAAGAAAAACAA
Found at i:55064101 original size:15 final size:14
Alignment explanation
Indices: 55064080--55064115 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
55064070 ATAATCATTA
*
55064080 ATAATTATCTTAAT
1 ATAATTATCCTAAT
55064094 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
55064109 ATAATTA
1 ATAATTA
55064116 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:55066039 original size:5 final size:5
Alignment explanation
Indices: 55066029--55066101 Score: 55
Period size: 5 Copynumber: 14.6 Consensus size: 5
55066019 AGTAATAAAT
* *
55066029 AATAA AATAA AATAA AGTAATA AATAA AGT-A AATAA AATAA AATAATA
1 AATAA AATAA AATAA AAT-A-A AATAA AATAA AATAA AATAA AAT-A-A
*
55066077 AATAA AA-AA CA-AA AATAA AA-AA AAT
1 AATAA AATAA AATAA AATAA AATAA AAT
55066102 TTGGGTTGCC
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
4 13 0.24
5 31 0.56
6 4 0.07
7 7 0.13
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:55066043 original size:13 final size:12
Alignment explanation
Indices: 55066021--55066083 Score: 65
Period size: 12 Copynumber: 5.0 Consensus size: 12
55066011 TCCAAATAAG
55066021 TAATAAATAATAA
1 TAATAAATAA-AA
*
55066034 -AATAAAATAAAG
1 TAAT-AAATAAAA
*
55066046 TAATAAATAAAG
1 TAATAAATAAAA
55066058 TAAATAAAATAAAA
1 T-AAT-AAATAAAA
55066072 TAATAAATAAAA
1 TAATAAATAAAA
55066084 AACAAAAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
12 21 0.48
13 15 0.34
14 8 0.18
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (12 bp):
TAATAAATAAAA
Found at i:55066044 original size:17 final size:16
Alignment explanation
Indices: 55066022--55066100 Score: 72
Period size: 17 Copynumber: 4.8 Consensus size: 16
55066012 CCAAATAAGT
55066022 AATAAATAATAAAATAA
1 AATAAATAA-AAAATAA
*
55066039 AATAAAGTAATAAATAA
1 AATAAA-TAAAAAATAA
*
55066056 AGTAAATAAAATAA-AA
1 AATAAATAAAA-AATAA
*
55066072 TAATAAATAAAAAACAAA
1 -AATAAATAAAAAA-TAA
55066090 AATAAA-AAAAA
1 AATAAATAAAAA
55066101 TTTGGGTTGC
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
16 13 0.25
17 35 0.66
18 5 0.09
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.19
Consensus pattern (16 bp):
AATAAATAAAAAATAA
Found at i:55066069 original size:26 final size:26
Alignment explanation
Indices: 55066014--55066095 Score: 102
Period size: 26 Copynumber: 3.3 Consensus size: 26
55066004 ATTAATATCC
55066014 AAAT-AAGTAATAAAT-AATAAAATA
1 AAATAAAGTAATAAATAAATAAAATA
55066038 AAATAAAGTAATAAATAAAGT-AAATA
1 AAATAAAGTAATAAATAAA-TAAAATA
*
55066064 AAATAAAATAATAAATAAA-AAACA-A
1 AAATAAAGTAATAAATAAATAAA-ATA
55066089 AAATAAA
1 AAATAAA
55066096 AAAAATTTGG
Statistics
Matches: 52, Mismatches: 1, Indels: 9
0.84 0.02 0.15
Matches are distributed among these distances:
24 4 0.08
25 21 0.40
26 26 0.50
27 1 0.02
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.21
Consensus pattern (26 bp):
AAATAAAGTAATAAATAAATAAAATA
Found at i:55066098 original size:13 final size:12
Alignment explanation
Indices: 55066025--55066100 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
55066015 AATAAGTAAT
*
55066025 AAATAATAAAATA
1 AAATAA-AAAAAA
** *
55066038 AAATAAAGTAAT
1 AAATAAAAAAAA
*
55066050 AAATAAAGTAAATA
1 AAATAAA--AAAAA
* *
55066064 AAATAAAATAAT
1 AAATAAAAAAAA
55066076 AAATAAAAAACAA
1 AAATAAAAAA-AA
55066089 AAATAAAAAAAA
1 AAATAAAAAAAA
55066101 TTTGGGTTGC
Statistics
Matches: 47, Mismatches: 13, Indels: 7
0.70 0.19 0.10
Matches are distributed among these distances:
12 22 0.47
13 17 0.36
14 8 0.17
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (12 bp):
AAATAAAAAAAA
Found at i:55072445 original size:15 final size:14
Alignment explanation
Indices: 55072424--55072459 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
55072414 ATAATCCTTA
*
55072424 ATAATTATCTTAAT
1 ATAATTATCCTAAT
55072438 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
55072453 ATAATTA
1 ATAATTA
55072460 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:55073837 original size:15 final size:15
Alignment explanation
Indices: 55073817--55073858 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
55073807 TGGAGATTGG
55073817 GAAAGGAGAGGAAAA
1 GAAAGGAGAGGAAAA
*
55073832 GAAAGGAGAGGAGAA
1 GAAAGGAGAGGAAAA
*
55073847 GAGAGGAGAGGA
1 GAAAGGAGAGGA
55073859 GGAGAGATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (15 bp):
GAAAGGAGAGGAAAA
Found at i:55073859 original size:15 final size:15
Alignment explanation
Indices: 55073820--55073865 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
55073810 AGATTGGGAA
* *
55073820 AGGAGAGGAAAAGAA
1 AGGAGAGGAGAAGAG
55073835 AGGAGAGGAGAAGAG
1 AGGAGAGGAGAAGAG
*
55073850 AGGAGAGGAGGAGAG
1 AGGAGAGGAGAAGAG
55073865 A
1 A
55073866 TTGGAGGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (15 bp):
AGGAGAGGAGAAGAG
Found at i:55090457 original size:17 final size:19
Alignment explanation
Indices: 55090424--55090458 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
55090414 TAATAGAATA
55090424 GAAAATAGTGTAAATTGAT
1 GAAAATAGTGTAAATTGAT
55090443 GAAAATA-TG-AAATTGA
1 GAAAATAGTGTAAATTGA
55090459 CTTTGAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (19 bp):
GAAAATAGTGTAAATTGAT
Found at i:55090612 original size:27 final size:28
Alignment explanation
Indices: 55090550--55090613 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
55090540 GATGAAAATA
55090550 GTGTAAATT-GAAATATGCATACTTAAT
1 GTGTAAATTGGAAATATGCATACTTAAT
*
55090577 GTTGT-AATTGGATATATGCATACTT-AT
1 G-TGTAAATTGGAAATATGCATACTTAAT
55090604 GTGTAAATTG
1 GTGTAAATTG
55090614 ATGAAAATGT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 3 0.09
27 13 0.39
28 17 0.52
ACGTcount: A:0.34, C:0.06, G:0.19, T:0.41
Consensus pattern (28 bp):
GTGTAAATTGGAAATATGCATACTTAAT
Found at i:55091299 original size:35 final size:35
Alignment explanation
Indices: 55091252--55091342 Score: 121
Period size: 35 Copynumber: 2.6 Consensus size: 35
55091242 TCAAAGGTGA
* * *
55091252 CTTTAAAAAGGTTGGGATAGACCCGTCTAAGGCAAC
1 CTTT-AAAAGGTTGGGATAGACACATCTAAGCCAAC
55091288 CTTTAAAAGGTTGGGATAGACACATCTAAGCCAAC
1 CTTTAAAAGGTTGGGATAGACACATCTAAGCCAAC
*
55091323 C-TTAAATATGTTGGGATAGA
1 CTTTAAA-AGGTTGGGATAGA
55091343 TAAGTCTAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
34 5 0.10
35 41 0.82
36 4 0.08
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.25
Consensus pattern (35 bp):
CTTTAAAAGGTTGGGATAGACACATCTAAGCCAAC
Found at i:55091465 original size:6 final size:6
Alignment explanation
Indices: 55091448--55091477 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
55091438 ATACAACTAA
55091448 AAAATAT AAAATT AAAATT AAAATT AAAAT
1 AAAAT-T AAAATT AAAATT AAAATT AAAAT
55091478 AAAGGTTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (6 bp):
AAAATT
Found at i:55094192 original size:37 final size:37
Alignment explanation
Indices: 55094151--55094246 Score: 113
Period size: 41 Copynumber: 2.5 Consensus size: 37
55094141 TAATGAAAAA
** *
55094151 AGTGTAAGATAATATTTTTTGTATTAAACAAATAGAT
1 AGTGTAAGATAATATTTTGGGTATTAAACAAATAGAG
55094188 AGTGTAA-ATTTAATGAAATTTTGGGTATTAAACAAATAGAG
1 AGTGTAAGA--TAAT---ATTTTGGGTATTAAACAAATAGAG
55094229 AGTGTAAGATAATATTTT
1 AGTGTAAGATAATATTTT
55094247 ATTTAATTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
36 1 0.02
37 12 0.24
38 4 0.08
40 4 0.08
41 28 0.56
42 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.17, T:0.39
Consensus pattern (37 bp):
AGTGTAAGATAATATTTTGGGTATTAAACAAATAGAG
Found at i:55094822 original size:136 final size:136
Alignment explanation
Indices: 55094619--55094870 Score: 414
Period size: 136 Copynumber: 1.9 Consensus size: 136
55094609 AAAAACTGAC
*
55094619 TCTTATTTAAGCGTTGCCTTAGGCATACATAACCCAACCCTTATACAAAGAGTTGGCCAAAGAGT
1 TCTTATTTAAACGTTGCCTTAGGCATACATAACCCAACCCTTATACAAAGAGTTGGCCAAAGAGT
* * * *
55094684 ATGTCGGTAAGTCTATCCTAACACTTAGGAAAGTTTCGGCCCAAAAGTGTCGGCATTGTGACAAA
66 ATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGGCACAAAAGTGTCGGCATTGTGACAAA
55094749 TCCGAA
131 TCCGAA
* * * *
55094755 TCTTATTTAAACGTTGCCTTAGGCATGCATATCCCAACCCTTATACAAAGAGTTGGCTAAAGCGT
1 TCTTATTTAAACGTTGCCTTAGGCATACATAACCCAACCCTTATACAAAGAGTTGGCCAAAGAGT
*
55094820 ATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGGCACAAAAGTGTC
66 ATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGGCACAAAAGTGTC
55094871 ATCTTAAGAC
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
136 106 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (136 bp):
TCTTATTTAAACGTTGCCTTAGGCATACATAACCCAACCCTTATACAAAGAGTTGGCCAAAGAGT
ATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGGCACAAAAGTGTCGGCATTGTGACAAA
TCCGAA
Found at i:55095680 original size:20 final size:20
Alignment explanation
Indices: 55095651--55095708 Score: 95
Period size: 20 Copynumber: 3.0 Consensus size: 20
55095641 GAACAAAGGG
55095651 TAAT-TAAATAATAATATTT
1 TAATATAAATAATAATATTT
55095670 TAATATAAATAATAATATTT
1 TAATATAAATAATAATATTT
55095690 TAATATAAA-AATAA-ATTT
1 TAATATAAATAATAATATTT
55095708 T
1 T
55095709 CCTATTTAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
18 5 0.13
19 9 0.24
20 24 0.63
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAATATAAATAATAATATTT
Found at i:55109755 original size:14 final size:14
Alignment explanation
Indices: 55109736--55109763 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
55109726 TTGTTGTCTT
55109736 CTGAGCAAGCAAAG
1 CTGAGCAAGCAAAG
55109750 CTGAGCAAGCAAAG
1 CTGAGCAAGCAAAG
55109764 TATAGATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.29, T:0.07
Consensus pattern (14 bp):
CTGAGCAAGCAAAG
Found at i:55116992 original size:118 final size:118
Alignment explanation
Indices: 55116748--55116983 Score: 445
Period size: 118 Copynumber: 2.0 Consensus size: 118
55116738 TTCGGTACTT
*
55116748 TCTCGAATTGACCTTCAGTGGGTTTAATCGTGTCTATTCCCATTCGAGCAAATATATGCAACATA
1 TCTCGAATTGACCGTCAGTGGGTTTAATCGTGTCTATTCCCATTCGAGCAAATATATGCAACATA
*
55116813 TTAGTAAAAATTCGACTAACAGTTTCCCCAGATCGTTGAAATCGCTCTGTTGC
66 TCAGTAAAAATTCGACTAACAGTTTCCCCAGATCGTTGAAATCGCTCTGTTGC
55116866 TCTCGAATTGACCGTCAGTGGGTTTAATCGTGTCTATTCCCATTCGAGCAAATATATGCAACATA
1 TCTCGAATTGACCGTCAGTGGGTTTAATCGTGTCTATTCCCATTCGAGCAAATATATGCAACATA
*
55116931 TCAGTAAAAATTTGACTAACAGTTTCCCCAGATCGTTGAAATCGCTCTGTTGC
66 TCAGTAAAAATTCGACTAACAGTTTCCCCAGATCGTTGAAATCGCTCTGTTGC
55116984 ATTTGAATTT
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 115 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (118 bp):
TCTCGAATTGACCGTCAGTGGGTTTAATCGTGTCTATTCCCATTCGAGCAAATATATGCAACATA
TCAGTAAAAATTCGACTAACAGTTTCCCCAGATCGTTGAAATCGCTCTGTTGC
Found at i:55121048 original size:12 final size:12
Alignment explanation
Indices: 55121031--55121055 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
55121021 TTGCAGGAGA
55121031 TGTTTTCTTATT
1 TGTTTTCTTATT
55121043 TGTTTTCTTATT
1 TGTTTTCTTATT
55121055 T
1 T
55121056 TATCAGGTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.76
Consensus pattern (12 bp):
TGTTTTCTTATT
Found at i:55122178 original size:17 final size:18
Alignment explanation
Indices: 55122130--55122178 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 18
55122120 TTTTAATTTA
*
55122130 TTAAATAAAA-AATAATT
1 TTAAATAAAATAATTATT
**
55122147 TTAGTTAAAAT-ATTA-T
1 TTAAATAAAATAATTATT
55122163 TTAAATAAAATAATTA
1 TTAAATAAAATAATTA
55122179 AATTCCAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
TTAAATAAAATAATTATT
Found at i:55123386 original size:20 final size:21
Alignment explanation
Indices: 55123330--55123386 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
55123320 TTTGTATTTT
*
55123330 GTAGATATAGGATAAAAGTGTCA
1 GTAGATATAGGATAAAA--GTAA
55123353 -TAGATAT-GGAATAAAA-TAA
1 GTAGATATAGG-ATAAAAGTAA
55123372 GTAGATATAGGATAA
1 GTAGATATAGGATAA
55123387 TTGTAACAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
19 2 0.07
20 11 0.37
21 4 0.13
22 13 0.43
ACGTcount: A:0.49, C:0.02, G:0.23, T:0.26
Consensus pattern (21 bp):
GTAGATATAGGATAAAAGTAA
Found at i:55130699 original size:14 final size:14
Alignment explanation
Indices: 55130680--55130714 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
55130670 ATTTAAAAGT
55130680 TAACTAAATTTTAA
1 TAACTAAATTTTAA
55130694 TAACTAAATTTTAA
1 TAACTAAATTTTAA
55130708 TAA-TAAA
1 TAACTAAA
55130715 CTAACTACTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.19
14 17 0.81
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (14 bp):
TAACTAAATTTTAA
Found at i:55139174 original size:7 final size:7
Alignment explanation
Indices: 55139164--55139205 Score: 59
Period size: 7 Copynumber: 5.9 Consensus size: 7
55139154 ATTAACAATT
55139164 AATAAAA
1 AATAAAA
55139171 AATAAAA
1 AATAAAA
55139178 AATAAAA
1 AATAAAA
55139185 AATAAAA
1 AATAAAA
55139192 TAA-AATAA
1 -AATAA-AA
55139200 AATAAA
1 AATAAA
55139206 GTTGATAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AATAAAA
Found at i:55139184 original size:5 final size:5
Alignment explanation
Indices: 55139169--55139205 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
55139159 CAATTAATAA
55139169 AAAAT AAAA- AATAA- AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAA
55139206 GTTGATAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:55144080 original size:32 final size:31
Alignment explanation
Indices: 55144006--55144101 Score: 92
Period size: 32 Copynumber: 3.2 Consensus size: 31
55143996 ATTATTTCTA
* *
55144006 TTTTTATAAT-T-TATACATCTA-AT-TATT
1 TTTTTATAATATATATATATATATATCTATT
*
55144033 TTTTTATAATATATATATGTATATATCTATT
1 TTTTTATAATATATATATATATATATCTATT
* * *
55144064 TTTTTATATATGTATATGTATATATATTTATAT
1 TTTTTATA-ATATATATATATATATATCTAT-T
55144097 TTTTT
1 TTTTT
55144102 TTCTAACGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
27 10 0.18
28 1 0.02
29 7 0.12
30 2 0.04
31 12 0.21
32 18 0.32
33 6 0.11
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTTTATAATATATATATATATATATCTATT
Found at i:55144093 original size:24 final size:24
Alignment explanation
Indices: 55144044--55144096 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
55144034 TTTTATAATA
* * *
55144044 TATATATGTATATATCTATTTTTT
1 TATATATGTATATATATATATATT
*
55144068 TATATATGTATATGTATATATATT
1 TATATATGTATATATATATATATT
55144092 TATAT
1 TATAT
55144097 TTTTTTTCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (24 bp):
TATATATGTATATATATATATATT
Found at i:55151594 original size:30 final size:30
Alignment explanation
Indices: 55151559--55151623 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
55151549 ATTTAAAACC
*
55151559 TTTTTT-AGAAATTAAATATATATTTTGAAT
1 TTTTTTGAAAAATTAAATATA-ATTTTGAAT
** *
55151589 TTTTTTGAAAAATTATTTTTAATTTTGAAT
1 TTTTTTGAAAAATTAAATATAATTTTGAAT
55151619 TTTTT
1 TTTTT
55151624 CTATAACTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 20 0.67
31 10 0.33
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (30 bp):
TTTTTTGAAAAATTAAATATAATTTTGAAT
Found at i:55153830 original size:13 final size:13
Alignment explanation
Indices: 55153814--55153876 Score: 72
Period size: 13 Copynumber: 4.8 Consensus size: 13
55153804 TTTAAACCAA
*
55153814 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
*
55153827 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
55153840 ACTTTTCTATAGC
1 ACTTTTCAAAAGC
*
55153853 AGTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
55153866 ACTTCTCAAAA
1 ACTTTTCAAAA
55153877 ACAATGAAGA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 40 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:55160758 original size:6 final size:6
Alignment explanation
Indices: 55160747--55160776 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
55160737 TTTGCATCTG
55160747 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
55160777 TTAGAATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:55161642 original size:20 final size:23
Alignment explanation
Indices: 55161611--55161661 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
55161601 TATTATAATG
*
55161611 TTTTTAAGT-AAATTA-TTAGTT
1 TTTTTAAGTAAAATTACTGAGTT
55161632 TTTTTAA-TAAAATTACTGAGTT
1 TTTTTAAGTAAAATTACTGAGTT
55161654 TATTTTAA
1 T-TTTTAA
55161662 AAGAATCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 13 0.50
22 6 0.23
23 6 0.23
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (23 bp):
TTTTTAAGTAAAATTACTGAGTT
Found at i:55169925 original size:5 final size:5
Alignment explanation
Indices: 55169915--55169982 Score: 84
Period size: 5 Copynumber: 13.0 Consensus size: 5
55169905 ATTAACATAA
*
55169915 AAAAT AAAAT AAAAT AAAAT AAAAT AGAAAAT AAAAT -ATAT ATAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT --AAAAT AAAAT AAAAT A-AAAT
55169962 AAAAT AAAAT AAAAAT AAAAT
1 AAAAT AAAAT -AAAAT AAAAT
55169983 TAGGTTGCAT
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
4 3 0.05
5 39 0.70
6 9 0.16
7 5 0.09
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.22
Consensus pattern (5 bp):
AAAAT
Found at i:55169925 original size:27 final size:27
Alignment explanation
Indices: 55169911--55169982 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
55169901 ATTTATTAAC
55169911 ATAAAAAATAAAATAAAATAAAATAAA
1 ATAAAAAATAAAATAAAATAAAATAAA
* *
55169938 ATAGAAAATAAAAT-ATATATAAATAAA
1 ATAAAAAATAAAATAAAATA-AAATAAA
*
55169965 ATAAAATA-AAAATAAAAT
1 ATAAAAAATAAAATAAAAT
55169983 TAGGTTGCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
26 9 0.24
27 29 0.76
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.22
Consensus pattern (27 bp):
ATAAAAAATAAAATAAAATAAAATAAA
Found at i:55169951 original size:32 final size:31
Alignment explanation
Indices: 55169915--55169982 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 31
55169905 ATTAACATAA
55169915 AAAATAAA-ATAAAATAAAATAAAATAGAAAAT
1 AAAATAAATAT-AAATAAAATAAAATA-AAAAT
*
55169947 AAAATATATATAAATAAAATAAAATAAAAAT
1 AAAATAAATATAAATAAAATAAAATAAAAAT
55169978 AAAAT
1 AAAAT
55169983 TAGGTTGCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 10 0.29
32 22 0.65
33 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.22
Consensus pattern (31 bp):
AAAATAAATATAAATAAAATAAAATAAAAAT
Found at i:55175893 original size:19 final size:19
Alignment explanation
Indices: 55175869--55175912 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
55175859 TAAAAGCAAT
55175869 ACAACATCAA-CCCAAATAA
1 ACAACAT-AAGCCCAAATAA
*
55175888 ACAACATAAGTCCAAATAA
1 ACAACATAAGCCCAAATAA
55175907 ACAACA
1 ACAACA
55175913 AAAACAATAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.59, C:0.27, G:0.02, T:0.11
Consensus pattern (19 bp):
ACAACATAAGCCCAAATAA
Found at i:55183028 original size:51 final size:49
Alignment explanation
Indices: 55182972--55183098 Score: 132
Period size: 51 Copynumber: 2.5 Consensus size: 49
55182962 ACTTTAAATG
* *
55182972 TAAAAATTAAGAATTAAAATATTTTTATTTATATTAATTAT-TTAAAATATA
1 TAAAAATTAA-AATTAAATTATTTTT-TGTATA-TAATTATATTAAAATATA
* * *
55183023 TAAAAATT-AAATTAAATTATATTTTGTATATAATTATATTAAATTATT
1 TAAAAATTAAAATTAAATTATTTTTTGTATATAATTATATTAAAATATA
* *
55183071 TAAATATTATATAATTTAATTATTTTTT
1 TAAAAATTA-A-AATTAAATTATTTTTT
55183099 TATTTTCTAC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
47 7 0.11
48 20 0.31
49 13 0.20
50 2 0.03
51 22 0.34
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (49 bp):
TAAAAATTAAAATTAAATTATTTTTTGTATATAATTATATTAAAATATA
Found at i:55185328 original size:4 final size:4
Alignment explanation
Indices: 55185319--55185369 Score: 102
Period size: 4 Copynumber: 12.8 Consensus size: 4
55185309 ATGTATGCAA
55185319 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
55185367 ATA
1 ATA
55185370 GAATCGTTAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:55185436 original size:25 final size:26
Alignment explanation
Indices: 55185408--55185470 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
55185398 ATACGTGACT
55185408 GCATGCATAGATCCTA-AATAGTGCG
1 GCATGCATAGATCCTATAATAGTGCG
* *
55185433 GCATGCATAGATCCTATAATGGTGCT
1 GCATGCATAGATCCTATAATAGTGCG
*
55185459 ACATGCATAGAT
1 GCATGCATAGAT
55185471 AGTGTTACCA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 16 0.47
26 18 0.53
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATGCATAGATCCTATAATAGTGCG
Found at i:55192672 original size:19 final size:19
Alignment explanation
Indices: 55192652--55192689 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
55192642 GTTTTTTTTA
55192652 AAAATAT-TTTTAAAATTT
1 AAAATATATTTTAAAATTT
55192670 AAAATATGATTTTAAAATTT
1 AAAATAT-ATTTTAAAATTT
55192690 CTTAAACTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (19 bp):
AAAATATATTTTAAAATTT
Found at i:55192853 original size:23 final size:22
Alignment explanation
Indices: 55192807--55192857 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
55192797 TGAAACATTA
55192807 TTTTAAAATAATTTTACAAGTT
1 TTTTAAAATAATTTTACAAGTT
* *
55192829 TTATTAAAATATTATTTATAA-TT
1 TT-TTAAAATAAT-TTTACAAGTT
55192852 TTTTAA
1 TTTTAA
55192858 TAAAAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 6 0.24
23 13 0.52
24 6 0.24
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTTAAAATAATTTTACAAGTT
Found at i:55193294 original size:19 final size:19
Alignment explanation
Indices: 55193266--55193311 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
55193256 CATTAAAATC
* *
55193266 TAAGATATAATAATATTTT
1 TAAGAGATAATAATAATTT
55193285 TAAGAGATAATAATAATTT
1 TAAGAGATAATAATAATTT
*
55193304 TAATAGAT
1 TAAGAGAT
55193312 TTATGATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
TAAGAGATAATAATAATTT
Found at i:55194180 original size:12 final size:12
Alignment explanation
Indices: 55194163--55194200 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
55194153 TTCTTAAAAC
55194163 TTAAAAGATATT
1 TTAAAAGATATT
55194175 TTAAAAGA-ATAT
1 TTAAAAGATAT-T
*
55194187 TTAAAACATATT
1 TTAAAAGATATT
55194199 TT
1 TT
55194201 TGTAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
11 2 0.09
12 19 0.83
13 2 0.09
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (12 bp):
TTAAAAGATATT
Found at i:55194467 original size:43 final size:42
Alignment explanation
Indices: 55194403--55194657 Score: 314
Period size: 43 Copynumber: 6.0 Consensus size: 42
55194393 TTATAGAAAT
* *
55194403 AAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTTTCCCGC
1 AAACGCCGCTAAAG-GCATGTTCTTTAGCGGCGCTTTTCCCGC
* *
55194446 AAACGCCGCTAAAGGCAATGTTCTTTAGCGGCGCTTTTCCAGA
1 AAACGCCGCTAAAGGC-ATGTTCTTTAGCGGCGCTTTTCCCGC
* *
55194489 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTT-TCGC
1 AAACGCCGCTAAAGG-CATGTTCTTTAGCGGCGCTTTTCCCGC
* **
55194531 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTTCCAA
1 AAACGCCGCTAAAGG-CATGTTCTTTAGCGGCGCTTTTCCCGC
* * *
55194574 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTAAAGG-CATGTTCTTTAGCGGCGCTTTTCCCGC
* * *
55194617 AAACGCCGTTAAAGGTTATGTTCTTTAGCGGCACTTTTCCC
1 AAACGCCGCTAAAGG-CATGTTCTTTAGCGGCGCTTTTCCC
55194658 ATAAACACCG
Statistics
Matches: 190, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
42 38 0.20
43 151 0.79
44 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (42 bp):
AAACGCCGCTAAAGGCATGTTCTTTAGCGGCGCTTTTCCCGC
Found at i:55194564 original size:85 final size:84
Alignment explanation
Indices: 55194403--55194656 Score: 364
Period size: 85 Copynumber: 3.0 Consensus size: 84
55194393 TTATAGAAAT
* * *
55194403 AAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAGGCAATGTT
1 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTT-TCGCAAACGCCGCTAAAGGCAATGTT
55194468 CTTTAGCGGCGCTTTTCCAGA
65 CTTTAGCGGCGCTTTTCCA-A
*
55194489 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCGCAAACGCCGCTAAAGGCCATGTTC
1 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCGCAAACGCCGCTAAAGGCAATGTTC
55194554 TTTAGCGGCGCTTTTTCCAA
66 TTTAGCGGCGC-TTTTCCAA
* * * * * **
55194574 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCACTTTTTCCACAAACGCCGTTAAAGGTTATGTT
1 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTT-CGCAAACGCCGCTAAAGGCAATGTT
*
55194639 CTTTAGCGGCACTTTTCC
65 CTTTAGCGGCGCTTTTCC
55194657 CATAAACACC
Statistics
Matches: 154, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
85 79 0.51
86 75 0.49
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (84 bp):
AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCGCAAACGCCGCTAAAGGCAATGTTC
TTTAGCGGCGCTTTTCCAA
Found at i:55194566 original size:128 final size:128
Alignment explanation
Indices: 55194403--55194654 Score: 371
Period size: 128 Copynumber: 2.0 Consensus size: 128
55194393 TTATAGAAAT
* **
55194403 AAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAGGCAATGTT
1 AAACGCCCCTAAAGACCATGTTCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGGCAATGTT
* *
55194468 CTTTAGCGGCGC-TTTTCCAGAAAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCGC
66 CTTTAGCGGCACTTTTTCCA-AAAACGCCACTAAAGGTCATGTTCTTTAGCGGCACTTTTTCGC
* * * *
55194531 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCGCTTTTTCCAAAAACGCCGCTAAAGGCCATGTT
1 AAACGCCCCTAAAGACCATGTTCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGGCAATGTT
* ** *
55194596 CTTTAGCGGCACTTTTTCCACAAACGCCGTTAAAGGTTATGTTCTTTAGCGGCACTTTT
66 CTTTAGCGGCACTTTTTCCAAAAACGCCACTAAAGGTCATGTTCTTTAGCGGCACTTTT
55194655 CCCATAAACA
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
128 103 0.94
129 7 0.06
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (128 bp):
AAACGCCCCTAAAGACCATGTTCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTAAAGGCAATGTT
CTTTAGCGGCACTTTTTCCAAAAACGCCACTAAAGGTCATGTTCTTTAGCGGCACTTTTTCGC
Found at i:55194669 original size:86 final size:85
Alignment explanation
Indices: 55194403--55194670 Score: 376
Period size: 86 Copynumber: 3.1 Consensus size: 85
55194393 TTATAGAAAT
* * *
55194403 AAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTTTCCCGCAAACGCCGCTAAAGGCAATGTT
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCCGCAAACGCCGCTAAAGGCAATGTT
55194468 CTTTAGCGGCGCTTTTCCAGA
66 CTTTAGCGGCGCTTTTCCA-A
* *
55194489 AAACGCCACTAAAGGTCATGTTCTTTAGCGGCGCTTTTT-CGCAAACGCCGCTAAAGGCCATGTT
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCCGCAAACGCCGCTAAAGGCAATGTT
55194553 CTTTAGCGGCGCTTTTTCCAA
66 CTTTAGCGGCGC-TTTTCCAA
* * * * **
55194574 AAACGCCGCTAAAGGCCATGTTCTTTAGCGGCACTTTTTCCACAAACGCCGTTAAAGGTTATGTT
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCCGCAAACGCCGCTAAAGGCAATGTT
* *
55194639 CTTTAGCGGCACTTTTCCCAT
66 CTTTAGCGGCGCTTTT-CCAA
*
55194660 AAACACCGCTA
1 AAACGCCGCTA
55194671 TTGTTTGGTG
Statistics
Matches: 165, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
85 77 0.47
86 88 0.53
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (85 bp):
AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCGCTTTTTCCGCAAACGCCGCTAAAGGCAATGTT
CTTTAGCGGCGCTTTTCCAA
Found at i:55195229 original size:25 final size:26
Alignment explanation
Indices: 55195178--55195239 Score: 90
Period size: 25 Copynumber: 2.4 Consensus size: 26
55195168 TTTTACAATG
* *
55195178 ATTAAGTTATGTAAATAATATGAGTT
1 ATTAAGTTATGCAAATAATATAAGTT
*
55195204 ATTAAGTTATGCATAT-ATATAAGTT
1 ATTAAGTTATGCAAATAATATAAGTT
55195229 ATTAAGTTATG
1 ATTAAGTTATG
55195240 TAAGTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
25 19 0.58
26 14 0.42
ACGTcount: A:0.40, C:0.02, G:0.15, T:0.44
Consensus pattern (26 bp):
ATTAAGTTATGCAAATAATATAAGTT
Found at i:55195243 original size:17 final size:17
Alignment explanation
Indices: 55195178--55195249 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
55195168 TTTTACAATG
* *
55195178 ATTAAGTTATGTAAATA
1 ATTAAGTTATGTAAGTT
*
55195195 ATATGAGTTAT-TAAGTT
1 AT-TAAGTTATGTAAGTT
** *
55195212 ATGCA-TATATATAAGTT
1 ATTAAGT-TATGTAAGTT
55195229 ATTAAGTTATGTAAGTT
1 ATTAAGTTATGTAAGTT
55195246 ATTA
1 ATTA
55195250 TGTGAGTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
15 1 0.02
16 4 0.09
17 30 0.70
18 8 0.19
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.44
Consensus pattern (17 bp):
ATTAAGTTATGTAAGTT
Found at i:55195364 original size:17 final size:17
Alignment explanation
Indices: 55195342--55195401 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
55195332 ATATATTTTA
55195342 AAATTATTAAGTTATGT
1 AAATTATTAAGTTATGT
* *
55195359 AAATTATGTGAGTTGT-T
1 AAATTAT-TAAGTTATGT
*
55195376 AAGTTATTAAGTTATGT
1 AAATTATTAAGTTATGT
*
55195393 AAGTTATTA
1 AAATTATTA
55195402 TGTGAATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
16 6 0.17
17 24 0.67
18 6 0.17
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (17 bp):
AAATTATTAAGTTATGT
Found at i:55195397 original size:9 final size:8
Alignment explanation
Indices: 55195345--55195401 Score: 60
Period size: 9 Copynumber: 6.8 Consensus size: 8
55195335 TATTTTAAAA
55195345 TTATTAAG
1 TTATTAAG
*
55195353 TTATGTAAA
1 TTAT-TAAG
*
55195362 TTATGTGAG
1 TTAT-TAAG
*
55195371 TTGTTAAG
1 TTATTAAG
55195379 TTATTAAG
1 TTATTAAG
55195387 TTATGTAAG
1 TTAT-TAAG
55195396 TTATTA
1 TTATTA
55195402 TGTGAATTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 20 0.49
9 21 0.51
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (8 bp):
TTATTAAG
Found at i:55195424 original size:46 final size:46
Alignment explanation
Indices: 55195353--55195525 Score: 159
Period size: 46 Copynumber: 3.6 Consensus size: 46
55195343 AATTATTAAG
* * *
55195353 TTATGTAAATTATGTGAGTTGTTAAGTTATTAAGTTATGTAAGTTA
1 TTATGTAAATTATATAAGTTATTAAGTTATTAAGTTATGTAAGTTA
* * * *
55195399 TTATGTGAATTATATAAGTTATTAAGTTA-TATGGTATGACATATATATATGTA
1 TTATGTAAATTATATAAGTTATTAAGTTATTA-AGT-T---ATGTA-A-GT-TA
* * * *
55195452 TTATGTAAATTATGTGAGTTGTTAAGTTGTTAAGTTATGTAAGTTA
1 TTATGTAAATTATATAAGTTATTAAGTTATTAAGTTATGTAAGTTA
*
55195498 TTATGTGAATTATATAAGTTATTAAGTT
1 TTATGTAAATTATATAAGTTATTAAGTT
55195526 GGACATTTTT
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
45 2 0.02
46 53 0.54
47 2 0.02
48 1 0.01
49 4 0.04
50 4 0.04
51 1 0.01
52 2 0.02
53 28 0.28
54 2 0.02
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (46 bp):
TTATGTAAATTATATAAGTTATTAAGTTATTAAGTTATGTAAGTTA
Found at i:55195430 original size:17 final size:17
Alignment explanation
Indices: 55195345--55195430 Score: 66
Period size: 17 Copynumber: 4.8 Consensus size: 17
55195335 TATTTTAAAA
* *
55195345 TTATTAAGTTATGTAAA
1 TTATTAAGTTATATAAG
* *
55195362 TTATGTGAGTTGT-TAAG
1 TTAT-TAAGTTATATAAG
*
55195379 TTATTAAGTTATGTAAG
1 TTATTAAGTTATATAAG
*
55195396 TTATTATGTGAATTATATAAG
1 TTATTA----AGTTATATAAG
55195417 TTATTAAGTTATAT
1 TTATTAAGTTATAT
55195431 GGTATGACAT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
16 6 0.11
17 28 0.51
18 6 0.11
21 15 0.27
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TTATTAAGTTATATAAG
Found at i:55195503 original size:53 final size:54
Alignment explanation
Indices: 55195369--55195525 Score: 128
Period size: 53 Copynumber: 2.9 Consensus size: 54
55195359 AAATTATGTG
* * *
55195369 AGTTGTTAAGTTAT-TAAGTTATGTAAGTTATTATGTGAATTATATAAGTTATTA
1 AGTTGTTAAGTTATGTAAGTTATATATG-TATTATGTAAATTATATAAGTTATTA
* * * * * *
55195423 AGTT-ATATGGTATG-ACA-TATATATATGTATTATGTAAATTATGTGAGTTGTTA
1 AGTTGTTAAGTTATGTA-AGT-TATATATGTATTATGTAAATTATATAAGTTATTA
* *
55195476 AGTTGTTAAGTTATGTAAGTTAT-TATGTGAATTATATAAGTTAT-TAAGTT
1 AGTTGTTAAGTTATGTAAGTTATATATGT--ATTATGTAAATTATATAAGTT
55195526 GGACATTTTT
Statistics
Matches: 80, Mismatches: 15, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
53 39 0.49
54 27 0.34
55 14 0.17
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (54 bp):
AGTTGTTAAGTTATGTAAGTTATATATGTATTATGTAAATTATATAAGTTATTA
Found at i:55196420 original size:16 final size:16
Alignment explanation
Indices: 55196396--55196429 Score: 54
Period size: 14 Copynumber: 2.2 Consensus size: 16
55196386 TAGTCAAAAA
55196396 ATAATATA-AAT-TTT
1 ATAATATATAATATTT
55196410 ATAATATATAATATTT
1 ATAATATATAATATTT
55196426 ATAA
1 ATAA
55196430 AAAAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.44
15 3 0.17
16 7 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAATATATAATATTT
Found at i:55196433 original size:38 final size:38
Alignment explanation
Indices: 55196368--55196445 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
55196358 TTAAATTCCT
* *
55196368 TTTTATAATATGCAAATTTAGTCAAAAAATAA-TATAAA
1 TTTTATAATATACAAATTTAGT-AAAAAAAAATTATAAA
*
55196406 TTTTATAATATATAATATTTA-TAAAAAAAAATTATAAA
1 TTTTATAATATACAA-ATTTAGTAAAAAAAAATTATAAA
55196444 TT
1 TT
55196446 GTCCAAAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 8 0.23
38 22 0.63
39 5 0.14
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (38 bp):
TTTTATAATATACAAATTTAGTAAAAAAAAATTATAAA
Found at i:55196722 original size:20 final size:20
Alignment explanation
Indices: 55196699--55196737 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
55196689 TTGTTATAAC
55196699 TTTATAAAATACACATTATT
1 TTTATAAAATACACATTATT
* *
55196719 TTTATAATATATACATTAT
1 TTTATAAAATACACATTAT
55196738 AGACTTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTATAAAATACACATTATT
Found at i:55199049 original size:101 final size:105
Alignment explanation
Indices: 55198844--55199053 Score: 311
Period size: 101 Copynumber: 2.0 Consensus size: 105
55198834 GCAAATTTTT
* * *
55198844 TTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAAAGTTTTTATTTTGTTTTTTTATAA
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCT--AAAGTTTTTATTTTGATTTTTTATAA
55198909 ATTGATTTATTTTTTGCGGCGTTTCTATAAAAAACGCCGCTA
64 ATTGATTTATTTTTTGCGGCGTTTCTATAAAAAACGCCGCTA
*
55198951 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCT-AA-TTTTT-TTTT-ATTTTTTATAAAT
1 TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAGTTTTTATTTTGATTTTTTATAAAT
* * *
55199012 TGATTTATTTTTTGCGGCGTTTTTATAGAAAATGCCGCTA
66 TGATTTATTTTTTGCGGCGTTTCTATAAAAAACGCCGCTA
55199052 TT
1 TT
55199054 GCTTACAAAA
Statistics
Matches: 96, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
101 51 0.53
102 4 0.04
103 5 0.05
104 2 0.02
107 34 0.35
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (105 bp):
TTTCATTTTGAACAAAACGACACCGTTTTGCTATGCTAAAGTTTTTATTTTGATTTTTTATAAAT
TGATTTATTTTTTGCGGCGTTTCTATAAAAAACGCCGCTA
Found at i:55199201 original size:138 final size:138
Alignment explanation
Indices: 55199059--55199413 Score: 628
Period size: 138 Copynumber: 2.6 Consensus size: 138
55199049 CTATTGCTTA
55199059 CAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTTATTTTTTT
1 CAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTTATTTTTTT
55199124 TATAAATTGATTTATTTTTTGCCTGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTCT-TAT
66 TATAAATTGATTTATTTTTTGCCTGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTT-TATA-
55199188 A-AAGCGCCG
129 AGAAGCGCCG
* *
55199197 CAAAATTTTTTCATGTTGAACAAAACGACGCCGTTTTGCTATTCTAAATTTTTTTTTATTTTTTT
1 CAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTTATTTTTTT
55199262 TATAAATTGATTTATTTTTTGCCTGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTTATAAG
66 TATAAATTGATTTATTTTTTGCCTGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTTATAAG
55199327 AAGCGCCG
131 AAGCGCCG
*
55199335 CAAAATTTTTTCATTTTGAACAAAACGACGCCATTTTGCTATTCTAAAA-TTTTTTTA-TTTTTT
1 CAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTTATTTTTTT
*
55199398 TATAAGTTGATTTATT
66 TATAAATTGATTTATT
55199414 ACCTTTAGCG
Statistics
Matches: 209, Mismatches: 6, Indels: 6
0.95 0.03 0.03
Matches are distributed among these distances:
136 21 0.10
137 10 0.05
138 178 0.85
ACGTcount: A:0.26, C:0.16, G:0.12, T:0.45
Consensus pattern (138 bp):
CAAAATTTTTTCATTTTGAACAAAACGACGCCGTTTTGCTATTCTAAAATTTTTTTTATTTTTTT
TATAAATTGATTTATTTTTTGCCTGAAAACGCCGCTATTGCTTACCTTTAGCGGCGCTTTATAAG
AAGCGCCG
Found at i:55199607 original size:23 final size:22
Alignment explanation
Indices: 55199561--55199609 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
55199551 CCTAACTTTT
55199561 AACCCCTAACATCTAACCCATA
1 AACCCCTAACATCTAACCCATA
*
55199583 AACCCCTAAACCA-CTAACCCCTA
1 AACCCCT-AA-CATCTAACCCATA
55199606 AACC
1 AACC
55199610 TTAAATCCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 7 0.29
23 15 0.62
24 2 0.08
ACGTcount: A:0.41, C:0.45, G:0.00, T:0.14
Consensus pattern (22 bp):
AACCCCTAACATCTAACCCATA
Found at i:55199872 original size:22 final size:23
Alignment explanation
Indices: 55199846--55199889 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
55199836 CCCTTGAATC
*
55199846 CCTAA-CTTTTAATCCCTAAACA
1 CCTAACCTTTTAACCCCTAAACA
55199868 CCTAACCTTTTAACCCCTAAAC
1 CCTAACCTTTTAACCCCTAAAC
55199890 CTTAAATCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.34, C:0.36, G:0.00, T:0.30
Consensus pattern (23 bp):
CCTAACCTTTTAACCCCTAAACA
Found at i:55200374 original size:114 final size:113
Alignment explanation
Indices: 55200174--55200658 Score: 747
Period size: 114 Copynumber: 4.3 Consensus size: 113
55200164 TAAAATATTT
**
55200174 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
1 TTAGCGGCGC-TTTCTTAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
*
55200239 TAGGTTTTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
65 TAGGTTTTTTTGCAGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
55200288 TTAGCGGCGCTTTCTTCAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
1 TTAGCGGCGCTTTCTT-AAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
* *
55200353 TAGGTTTTTTTGCAGCGCTTTCCCAAAAACGCCGCTAAATCCTTGAGCA
65 TAGGTTTTTTTGCAGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
* *
55200402 TTAGCGGTGCTTTCTTATAAATGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
1 TTAGCGGCGCTTTCTTA-AAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
* *
55200467 TAGGTTTTTTTGCAGCGCTTTCCCAAAAACGCCGCTAAATCCTTGAGCA
65 TAGGTTTTTTTGCAGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
* *
55200516 TTAGCGGTGCTTTCTTATAAATGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
1 TTAGCGGCGCTTTCTTA-AAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCT
* * * * * *
55200581 TAGGTTTTTTTGCGGTGCTTTACGAAAAATGCCACTAAAG-CCTGAGCA
65 TAGGTTTTTTTGCAGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
* *
55200629 TTAGCGACGCTTACTTAAAAACGCCGCTAA
1 TTAGCGGCGCTTTCTT-AAAACGCCGCTAA
55200659 TGCTTATTTT
Statistics
Matches: 349, Mismatches: 19, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
113 36 0.10
114 313 0.90
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (113 bp):
TTAGCGGCGCTTTCTTAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGGCGTCGTTGGGCTT
AGGTTTTTTTGCAGCGCTTTCCCAAAAACGCCGCTAAAGCCCTGAGCA
Found at i:55206245 original size:159 final size:156
Alignment explanation
Indices: 55205958--55206266 Score: 345
Period size: 159 Copynumber: 2.0 Consensus size: 156
55205948 AGCAGTATCG
* * *
55205958 ACCTCACTAGTCTAGCCTTTTTTTTCTTCTTCATGACATATTTTAGGGTTGAATGGTCGTTGTAG
1 ACCTCACTAATCTAGCCTTTTTTTTCTTCTTCATGACATACTTTAGGGCTGAATGGTCGTTGTAG
* ** * * *
55206023 ATATATGCTTGATTCACCATCAAATATGGCCAAAATTTTTCACATGTAGAAATAACTACTAACAT
66 ATATATACTCAATTCACCATCAAATATGGCCAAAATTTTTCACATGCAAAAACAACTACTAACAT
* *
55206088 CTCATTTTTAGTGGTAGTGTGCACCC
131 CTCATTTTCAATGGTAGTGTGCACCC
*
55206114 ACCTCATTAATCTAGCCTTTGTTTCTTTCTTCTTCATGACATACTTTAGGGCTGAATTGGTCAG-
1 ACCTCACTAATCTAGCC-TT-TTT-TTTCTTCTTCATGACATACTTTAGGGCTGAA-TGGTC-GT
*** * ** * **
55206178 TGTAGATATATACTCAATT-TGTATCAAATCAT-GCTAGCATTTTTCACATGCAAAAACAATTGT
61 TGTAGATATATACTCAATTCACCATCAAAT-ATGGCCAAAATTTTTCACATGCAAAAACAACTAC
*
55206241 TAACATCTCCTTTTCAATGGTAGTGT
125 TAACATCTCATTTTCAATGGTAGTGT
55206267 AATTGCACTA
Statistics
Matches: 125, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
156 15 0.12
157 2 0.02
158 3 0.02
159 81 0.65
160 23 0.18
161 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (156 bp):
ACCTCACTAATCTAGCCTTTTTTTTCTTCTTCATGACATACTTTAGGGCTGAATGGTCGTTGTAG
ATATATACTCAATTCACCATCAAATATGGCCAAAATTTTTCACATGCAAAAACAACTACTAACAT
CTCATTTTCAATGGTAGTGTGCACCC
Found at i:55209180 original size:27 final size:26
Alignment explanation
Indices: 55209149--55209220 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 26
55209139 TATAGAGTAC
*
55209149 GCCACCAAGGCTATTCTTTCAGAGTTT
1 GCCACCAAAGCTATTCTTT-AGAGTTT
55209176 GCCA-CAAAGCTTATTCATTTAGAGTTT
1 GCCACCAAAGC-TATTC-TTTAGAGTTT
*
55209203 GCCACAAAAGCTATTCTT
1 GCCACCAAAGCTATTCTT
55209221 AGCTTTTGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
26 7 0.17
27 25 0.62
28 8 0.20
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (26 bp):
GCCACCAAAGCTATTCTTTAGAGTTT
Found at i:55212446 original size:30 final size:30
Alignment explanation
Indices: 55212411--55212473 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
55212401 TTTTATTCAG
*
55212411 TTTTCAATTTAGATTTGT-ATTCAATTTAGT
1 TTTTC-ATTAAGATTTGTCATTCAATTTAGT
* * *
55212441 TTTTCATTAAGTTTTTTCATTCAGTTTAGT
1 TTTTCATTAAGATTTGTCATTCAATTTAGT
55212471 TTT
1 TTT
55212474 CTTTTATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 9 0.32
30 19 0.68
ACGTcount: A:0.22, C:0.08, G:0.10, T:0.60
Consensus pattern (30 bp):
TTTTCATTAAGATTTGTCATTCAATTTAGT
Found at i:55212898 original size:15 final size:15
Alignment explanation
Indices: 55212878--55212911 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
55212868 CATGAATTTG
*
55212878 ACAGTACACCTTGTA
1 ACAGTACACCCTGTA
*
55212893 ACAGTACGCCCTGTA
1 ACAGTACACCCTGTA
55212908 ACAG
1 ACAG
55212912 CCCGCCTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (15 bp):
ACAGTACACCCTGTA
Found at i:55217341 original size:23 final size:23
Alignment explanation
Indices: 55217314--55217362 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
55217304 TTGCAAAAAG
55217314 AAACTA-AAAATTAAACTTGAAT-T
1 AAACTAGAAAA-TAAA-TTGAATGT
55217337 AAACTAGAAAATAAATTGAATGT
1 AAACTAGAAAATAAATTGAATGT
55217360 AAA
1 AAA
55217363 AATCTCAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 14 0.58
24 4 0.17
ACGTcount: A:0.59, C:0.06, G:0.08, T:0.27
Consensus pattern (23 bp):
AAACTAGAAAATAAATTGAATGT
Found at i:55220619 original size:25 final size:25
Alignment explanation
Indices: 55220539--55220619 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
55220529 CTTGCCACCA
*
55220539 AGGCTTCCCAAATAATACGCCACAT
1 AGGCTTCTCAAATAATACGCCACAT
* * *
55220564 AGACCTT-TCAAGTAATTA-GCCACAA
1 AG-GCTTCTCAAATAA-TACGCCACAT
* *
55220589 AAGCTTCTGAAATAATACGCCACAT
1 AGGCTTCTCAAATAATACGCCACAT
55220614 AGGCTT
1 AGGCTT
55220620 TTTAGATAGA
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
24 5 0.12
25 32 0.76
26 5 0.12
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (25 bp):
AGGCTTCTCAAATAATACGCCACAT
Found at i:55225323 original size:16 final size:16
Alignment explanation
Indices: 55225299--55225329 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
55225289 TGTTTCTGAG
*
55225299 CATGGCATACTGCATA
1 CATGACATACTGCATA
55225315 CATGACATACTGCAT
1 CATGACATACTGCAT
55225330 GGGGTTAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (16 bp):
CATGACATACTGCATA
Found at i:55238357 original size:50 final size:49
Alignment explanation
Indices: 55238274--55238382 Score: 148
Period size: 50 Copynumber: 2.2 Consensus size: 49
55238264 GTACATGTAT
*
55238274 GCTCATACGAGCTATGAATCAGTATGCTCTCACGAGCTGGAAATCAGTAA
1 GCTCATACGAGCTATGAATCAGTAAGCTCTCACGAGCTGG-AATCAGTAA
* * * *
55238324 GCTCCTACGAGCTGA-GAATTAGTAAGTTCTCACGAGCTGGAATCGGTAA
1 GCTCATACGAGCT-ATGAATCAGTAAGCTCTCACGAGCTGGAATCAGTAA
55238373 GCTCATACGA
1 GCTCATACGA
55238383 TCTGTGGTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
49 17 0.33
50 34 0.65
51 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (49 bp):
GCTCATACGAGCTATGAATCAGTAAGCTCTCACGAGCTGGAATCAGTAA
Found at i:55238372 original size:24 final size:24
Alignment explanation
Indices: 55238280--55238376 Score: 106
Period size: 25 Copynumber: 3.9 Consensus size: 24
55238270 GTATGCTCAT
* *
55238280 ACGAGCTATGAATCAGTATGCTCTC
1 ACGAGCT-GGAATCAGTAAGCTCTC
55238305 ACGAGCTGGAAATCAGTAAGCTC-C
1 ACGAGCTGG-AATCAGTAAGCTCTC
* *
55238329 TACGAGCTGAGAATTAGTAAGTTCTC
1 -ACGAGCTG-GAATCAGTAAGCTCTC
*
55238355 ACGAGCTGGAATCGGTAAGCTC
1 ACGAGCTGGAATCAGTAAGCTC
55238377 ATACGATCTG
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
24 13 0.21
25 46 0.75
26 2 0.03
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.24
Consensus pattern (24 bp):
ACGAGCTGGAATCAGTAAGCTCTC
Found at i:55241633 original size:20 final size:19
Alignment explanation
Indices: 55241608--55241645 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
55241598 TTATTGCTAA
55241608 ACCATTCCATTGCAATTTAC
1 ACCATTCCATTGC-ATTTAC
55241628 ACCATTCCATTGCATTTA
1 ACCATTCCATTGCATTTA
55241646 GGTTAATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.37
Consensus pattern (19 bp):
ACCATTCCATTGCATTTAC
Found at i:55250513 original size:15 final size:15
Alignment explanation
Indices: 55250493--55250522 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
55250483 AAAAATTGTA
55250493 AAACAATAATTAGGG
1 AAACAATAATTAGGG
55250508 AAACAATAATTAGGG
1 AAACAATAATTAGGG
55250523 GTTTAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (15 bp):
AAACAATAATTAGGG
Found at i:55251594 original size:26 final size:26
Alignment explanation
Indices: 55251534--55251599 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
55251524 ACACCGCAGA
* *
55251534 TCTT-ATGAGCGTCCCGTTATATGGC
1 TCTTCATGAGCTTCCCGTTATAAGGC
55251559 TCTTCATGAGCTTCCCGGTTA-AAGGC
1 TCTTCATGAGCTTCCC-GTTATAAGGC
**
55251585 TCTTTGTGAGCTTCC
1 TCTTCATGAGCTTCC
55251600 TAATTAATGG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.11
26 27 0.77
27 4 0.11
ACGTcount: A:0.15, C:0.26, G:0.23, T:0.36
Consensus pattern (26 bp):
TCTTCATGAGCTTCCCGTTATAAGGC
Found at i:55256424 original size:19 final size:18
Alignment explanation
Indices: 55256392--55256434 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
55256382 TGTTTAAAAA
55256392 TTTAAAGCCTAAATTCAAT
1 TTTAAAGCCTAAA-TCAAT
*
55256411 TTTAAAGCAC-AAATCATT
1 TTTAAAGC-CTAAATCAAT
55256429 TTTAAA
1 TTTAAA
55256435 AAACATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 11 0.50
20 1 0.05
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (18 bp):
TTTAAAGCCTAAATCAAT
Found at i:55266355 original size:49 final size:49
Alignment explanation
Indices: 55266297--55266394 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
55266287 TAATTGATCA
* *
55266297 AGAACATCTTTCCCTAATTAACATGTTATTAAAGACTAATTATAAGGGT
1 AGAACATCTTTCCATAATTAACATGTTATTAAAGAATAATTATAAGGGT
*
55266346 AGAACATCTTTCTATAATTAACATGTTATTAAAGAATAATTATAAGGGT
1 AGAACATCTTTCCATAATTAACATGTTATTAAAGAATAATTATAAGGGT
55266395 TCATTTACTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (49 bp):
AGAACATCTTTCCATAATTAACATGTTATTAAAGAATAATTATAAGGGT
Found at i:55268696 original size:12 final size:12
Alignment explanation
Indices: 55268679--55268716 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
55268669 TGTCTGGGAG
55268679 TGGCGTTGGCAT
1 TGGCGTTGGCAT
*
55268691 TGGCGTTGGCGT
1 TGGCGTTGGCAT
*
55268703 TGGCATTGGCAT
1 TGGCGTTGGCAT
55268715 TG
1 TG
55268717 ACCATCCATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.08, C:0.16, G:0.42, T:0.34
Consensus pattern (12 bp):
TGGCGTTGGCAT
Found at i:55272699 original size:15 final size:15
Alignment explanation
Indices: 55272659--55272703 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
55272649 GGTCATAAAC
*
55272659 AAATAATAATAATAA
1 AAATAATAAAAATAA
55272674 AAATAATTAAAAATAA
1 AAATAA-TAAAAATAA
55272690 AAGA-AATAAAAATA
1 AA-ATAATAAAAATA
55272704 TTGTATCTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 14 0.52
16 12 0.44
17 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (15 bp):
AAATAATAAAAATAA
Found at i:55276534 original size:20 final size:20
Alignment explanation
Indices: 55276495--55276534 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
55276485 ACTTAATCTA
** *
55276495 AGATAATTAGTTATTTAATT
1 AGATAATTAGGGATTCAATT
55276515 AGATAATTAGGGATTCAATT
1 AGATAATTAGGGATTCAATT
55276535 GGTCATAGGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.15, T:0.42
Consensus pattern (20 bp):
AGATAATTAGGGATTCAATT
Found at i:55277625 original size:14 final size:15
Alignment explanation
Indices: 55277601--55277633 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
55277591 TTCAATTAAC
55277601 AATATTAAAGAAAAG
1 AATATTAAAGAAAAG
*
55277616 AATA-TAAAGAATAG
1 AATATTAAAGAAAAG
55277630 AATA
1 AATA
55277634 AAGGAAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (15 bp):
AATATTAAAGAAAAG
Found at i:55282518 original size:8 final size:8
Alignment explanation
Indices: 55282505--55282549 Score: 54
Period size: 8 Copynumber: 5.1 Consensus size: 8
55282495 TCATTTGAAC
55282505 ATAATTTT
1 ATAATTTT
55282513 ATAATTGTATAT
1 ATAA-T-T-T-T
55282525 ATAATTTT
1 ATAATTTT
55282533 ATAATTTT
1 ATAATTTT
55282541 ATAATTTT
1 ATAATTTT
55282549 A
1 A
55282550 GAAATTGTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
8 22 0.67
9 2 0.06
10 2 0.06
11 2 0.06
12 5 0.15
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (8 bp):
ATAATTTT
Found at i:55282530 original size:20 final size:20
Alignment explanation
Indices: 55282505--55282543 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
55282495 TCATTTGAAC
55282505 ATAATTTTATAATTGTATAT
1 ATAATTTTATAATTGTATAT
*
55282525 ATAATTTTATAATTTTATA
1 ATAATTTTATAATTGTATA
55282544 ATTTTAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
ATAATTTTATAATTGTATAT
Found at i:55291057 original size:27 final size:27
Alignment explanation
Indices: 55291027--55291084 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
55291017 TTGTCCTCCC
* *
55291027 CCTCATCATCA-TCTTCTTCTTCTTCAT
1 CCTCATCATCATTC-TCTTCCTCTTCAA
*
55291054 CCTCATCTTCATTCTCTTCCTCTTCAA
1 CCTCATCATCATTCTCTTCCTCTTCAA
55291081 CCTC
1 CCTC
55291085 TTTTTCCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.14, C:0.41, G:0.00, T:0.45
Consensus pattern (27 bp):
CCTCATCATCATTCTCTTCCTCTTCAA
Found at i:55291059 original size:21 final size:21
Alignment explanation
Indices: 55291029--55291072 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
55291019 GTCCTCCCCC
55291029 TCATCATCATCTTC-TTCTTCT
1 TCATCATCATCTTCATTC-TCT
*
55291050 TCATCCTCATCTTCATTCTCT
1 TCATCATCATCTTCATTCTCT
55291071 TC
1 TC
55291073 CTCTTCAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.14, C:0.36, G:0.00, T:0.50
Consensus pattern (21 bp):
TCATCATCATCTTCATTCTCT
Found at i:55297647 original size:18 final size:18
Alignment explanation
Indices: 55297614--55297714 Score: 87
Period size: 18 Copynumber: 5.6 Consensus size: 18
55297604 GTGAACCTAT
*
55297614 TATGTTATTA-GCGAACC
1 TATGTTGTTAGGCGAACC
55297631 TATGTTGTTAGGCGAACC
1 TATGTTGTTAGGCGAACC
* * *
55297649 TATATTGCTATGCGAACC
1 TATGTTGTTAGGCGAACC
* * *
55297667 CATGTTATTATGCGAACC
1 TATGTTGTTAGGCGAACC
** *
55297685 TATAATGTTATGTGCAAACC
1 TATGTTGTTA-G-GCGAACC
55297705 TATGTTGTTA
1 TATGTTGTTA
55297715 TCCAAACCTT
Statistics
Matches: 65, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
17 9 0.14
18 42 0.65
20 14 0.22
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (18 bp):
TATGTTGTTAGGCGAACC
Found at i:55297651 original size:38 final size:37
Alignment explanation
Indices: 55297600--55297714 Score: 126
Period size: 38 Copynumber: 3.1 Consensus size: 37
55297590 ACTTATCCCC
*
55297600 TTAGGTGAACCTATTATGTTATTAGCGAACCTATGTTG
1 TTAGGCGAACCTATTATGTTATT-GCGAACCTATGTTG
* * *
55297638 TTAGGCGAACCTA-TATTGCTA-TGCGAACCCATGTTA
1 TTAGGCGAACCTATTA-TGTTATTGCGAACCTATGTTG
* * *
55297674 TTATGCGAACCTATAATGTTATGTGCAAACCTATGTTG
1 TTAGGCGAACCTATTATGTTAT-TGCGAACCTATGTTG
55297712 TTA
1 TTA
55297715 TCCAAACCTT
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
36 28 0.44
37 4 0.06
38 31 0.49
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (37 bp):
TTAGGCGAACCTATTATGTTATTGCGAACCTATGTTG
Found at i:55297723 original size:38 final size:37
Alignment explanation
Indices: 55297606--55297715 Score: 132
Period size: 36 Copynumber: 2.9 Consensus size: 37
55297596 CCCCTTAGGT
* *
55297606 GAACCTATTATGTTATTAGCGAACCTATGTTGTTAGGC
1 GAACCTATAATGTTATT-GCGAACCTATGTTGTTATGC
* * * *
55297644 GAACCTATATTGCTA-TGCGAACCCATGTTATTATGC
1 GAACCTATAATGTTATTGCGAACCTATGTTGTTATGC
*
55297680 GAACCTATAATGTTATGTGCAAACCTATGTTGTTAT
1 GAACCTATAATGTTAT-TGCGAACCTATGTTGTTAT
55297716 CCAAACCTTA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
36 30 0.51
37 1 0.02
38 28 0.47
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (37 bp):
GAACCTATAATGTTATTGCGAACCTATGTTGTTATGC
Found at i:55298762 original size:18 final size:19
Alignment explanation
Indices: 55298720--55298756 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
55298710 TGTATATGTA
*
55298720 TCATTTCTCATTTTCATTT
1 TCATTTCTCATTTCCATTT
55298739 TCATTTC-CATTTCCATTT
1 TCATTTCTCATTTCCATTT
55298757 CTATTTTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.59
Consensus pattern (19 bp):
TCATTTCTCATTTCCATTT
Found at i:55304076 original size:22 final size:22
Alignment explanation
Indices: 55304051--55304120 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
55304041 TATTGTTTAG
55304051 TGTTGTTTTGCTGTCATTTTGA
1 TGTTGTTTTGCTGTCATTTTGA
* * *
55304073 TGTTATTTTGTTGTCATTTTGC
1 TGTTGTTTTGCTGTCATTTTGA
* * * * *
55304095 TATTGTATTGCTATTATTTTGT
1 TGTTGTTTTGCTGTCATTTTGA
55304117 TGTT
1 TGTT
55304121 ATTGTTTGGA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.11, C:0.07, G:0.19, T:0.63
Consensus pattern (22 bp):
TGTTGTTTTGCTGTCATTTTGA
Found at i:55304122 original size:11 final size:11
Alignment explanation
Indices: 55304051--55304123 Score: 56
Period size: 11 Copynumber: 6.6 Consensus size: 11
55304041 TATTGTTTAG
*
55304051 TGTTGTTTTGC
1 TGTTATTTTGC
* *
55304062 TGTCATTTTGA
1 TGTTATTTTGC
*
55304073 TGTTATTTTGT
1 TGTTATTTTGC
*
55304084 TGTCATTTTGC
1 TGTTATTTTGC
* * *
55304095 TATTGTATTGC
1 TGTTATTTTGC
* *
55304106 TATTATTTTGT
1 TGTTATTTTGC
55304117 TGTTATT
1 TGTTATT
55304124 GTTTGGATAT
Statistics
Matches: 47, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 47 1.00
ACGTcount: A:0.12, C:0.07, G:0.18, T:0.63
Consensus pattern (11 bp):
TGTTATTTTGC
Found at i:55304148 original size:36 final size:33
Alignment explanation
Indices: 55304075--55304150 Score: 80
Period size: 36 Copynumber: 2.2 Consensus size: 33
55304065 CATTTTGATG
* **
55304075 TTATTTTGTTGTCATTTTGCTATTGTATTGCTA
1 TTATTTTGTTGTCATTTTGATATTGTATAACTA
* *
55304108 TTATTTTGTTGTTATTGTTTGGATATTGTATAACTC
1 TTATTTTGTTGTCA-T-TTT-GATATTGTATAACTA
55304144 TTATTTT
1 TTATTTT
55304151 ATTATAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
33 13 0.37
34 1 0.03
35 3 0.09
36 18 0.51
ACGTcount: A:0.17, C:0.07, G:0.14, T:0.62
Consensus pattern (33 bp):
TTATTTTGTTGTCATTTTGATATTGTATAACTA
Found at i:55306676 original size:3 final size:3
Alignment explanation
Indices: 55306670--55306723 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
55306660 GTACTACTCT
55306670 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
55306718 TTA TTA
1 TTA TTA
55306724 CAGTCTGGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:55308399 original size:22 final size:22
Alignment explanation
Indices: 55308343--55308399 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
55308333 ATATAAGTAT
55308343 ATATATATTATA-AGAATAATGC
1 ATATATA-TATACAGAATAATGC
* *
55308365 ATGTATGTCATACA-AATATATGC
1 ATATATAT-ATACAGAATA-ATGC
55308388 ATATATATATAC
1 ATATATATATAC
55308400 GTACCAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
21 1 0.04
22 16 0.57
23 11 0.39
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (22 bp):
ATATATATATACAGAATAATGC
Found at i:55308431 original size:3 final size:3
Alignment explanation
Indices: 55308414--55308480 Score: 64
Period size: 3 Copynumber: 21.7 Consensus size: 3
55308404 CAAAGGTTTA
** * *
55308414 AAT AA- AAT AAAT AAT AAT AAAT AGG AAG AAAT AAT AAT AAT AAT GAT
1 AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AA-T AAT AAT AAT AAT AAT
55308461 AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
55308481 ATTTATTAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
2 2 0.04
3 44 0.81
4 8 0.15
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:55310159 original size:44 final size:43
Alignment explanation
Indices: 55310057--55310347 Score: 145
Period size: 44 Copynumber: 6.8 Consensus size: 43
55310047 CCTTTATTTT
* * * * *
55310057 AATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGTCTTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATTACTGGCCTC
* *
55310100 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCCTC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATTACTGGCCTC
* * *** *
55310144 GATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TTTTT
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGAT-T--ACTGGCCTC
* * * *
55310190 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGA--CCTGG--TGC
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGATTACTGGCCT-C
* * * * *
55310231 GATCTGCTCTACTGTAACTTCAGAGAGATAAGA-T-C---CTTT
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATTACTGGCCTC
* * ****
55310270 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTATATTC
1 AATCTGCTCCACTGTAAC-TCAGGGAGATAAGATTACTGGCCTC
*
55310314 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
1 AATCTGCTCCACTGTAA-CTCAGGGAGATAAGAT
55310348 CTGCAATTCT
Statistics
Matches: 189, Mismatches: 42, Indels: 33
0.72 0.16 0.12
Matches are distributed among these distances:
39 28 0.15
40 4 0.02
41 28 0.15
43 28 0.15
44 69 0.37
45 2 0.01
46 29 0.15
47 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGTAACTCAGGGAGATAAGATTACTGGCCTC
Found at i:55326037 original size:35 final size:35
Alignment explanation
Indices: 55325998--55326065 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
55325988 TTTGAAGTCC
*
55325998 TTTTTACTGCATCTCTAGCAAGAATTTTTGTCATT
1 TTTTTACTGCATCTCTAACAAGAATTTTTGTCATT
* * *
55326033 TTTTTACTGCATTTCTAACAATACTTTTTGTCA
1 TTTTTACTGCATCTCTAACAAGAATTTTTGTCA
55326066 AAGAATCCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.24, C:0.18, G:0.09, T:0.50
Consensus pattern (35 bp):
TTTTTACTGCATCTCTAACAAGAATTTTTGTCATT
Found at i:55327603 original size:9 final size:9
Alignment explanation
Indices: 55327586--55327616 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
55327576 TCGAGTTGAT
55327586 TCGAATAAC
1 TCGAATAAC
*
55327595 TCGATTAAC
1 TCGAATAAC
55327604 TCGAATAAC
1 TCGAATAAC
55327613 TCGA
1 TCGA
55327617 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:55331254 original size:38 final size:39
Alignment explanation
Indices: 55331212--55331287 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 39
55331202 TTTGGAACCT
55331212 GGTGGAAGATCAACTAAGATCCAAGTTTGA-TTTCCATC
1 GGTGGAAGATCAACTAAGATCCAAGTTTGATTTTCCATC
*
55331250 GGTGGAAGATCAACTAAGATCCAAGTTTTATTTTCCAT
1 GGTGGAAGATCAACTAAGATCCAAGTTTGATTTTCCAT
55331288 TATTAAATCC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 29 0.81
39 7 0.19
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (39 bp):
GGTGGAAGATCAACTAAGATCCAAGTTTGATTTTCCATC
Found at i:55336339 original size:14 final size:15
Alignment explanation
Indices: 55336311--55336343 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
55336301 TTAAAATATT
55336311 TATTAAAATTAAAAA
1 TATTAAAATTAAAAA
*
55336326 TATTAAAATAAAAAA
1 TATTAAAATTAAAAA
55336341 TAT
1 TAT
55336344 GTAGAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TATTAAAATTAAAAA
Found at i:55336449 original size:14 final size:15
Alignment explanation
Indices: 55336422--55336455 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
55336412 CTTGACTTTG
55336422 TAAAAAGACATTTTC
1 TAAAAAGACATTTTC
*
55336437 TAAAAAG-CTTTTTC
1 TAAAAAGACATTTTC
55336451 TAAAA
1 TAAAA
55336456 TGTTGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (15 bp):
TAAAAAGACATTTTC
Found at i:55340519 original size:14 final size:14
Alignment explanation
Indices: 55340500--55340539 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
55340490 TTGATTGGCA
55340500 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
55340514 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
55340528 GGAAAATGTTTT
1 GTAAAATGTTTT
55340540 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:55340552 original size:34 final size:35
Alignment explanation
Indices: 55340508--55340574 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
55340498 CAGTAAAATG
* * *
55340508 TTTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACTAGAAAATATTTTAC
*
55340542 TTTTCTGTAAAATGACTTACTAGAAAATATTTT
1 TTTTCCGTAAAATGACTTACTAGAAAATATTTT
55340575 CTAGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 14 0.50
35 14 0.50
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACTAGAAAATATTTTAC
Found at i:55340561 original size:20 final size:20
Alignment explanation
Indices: 55340523--55340562 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
55340513 CGTAAAATGA
**
55340523 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
55340543 TTTCTGTAAAATGACTTACT
1 TTTCTGGAAAATGACTTACT
55340563 AGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:55341979 original size:27 final size:27
Alignment explanation
Indices: 55341949--55342018 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
55341939 AATAATCAAT
*
55341949 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
55341976 TCAATATCTAACAAATTCAAGACATATA
1 TCAATATCCAAC-AATTCAAAACATATA
*
55342004 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
55342019 CTAAAATTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.51, C:0.20, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:55343502 original size:40 final size:40
Alignment explanation
Indices: 55343458--55343592 Score: 144
Period size: 40 Copynumber: 3.1 Consensus size: 40
55343448 TTTATTATTT
55343458 AAGTTACCATGACTTAAAATATATTGATCATGTATTTATA
1 AAGTTACCATGACTTAAAATATATTGATCATGTATTTATA
55343498 AAGTTACCATGACTTAAAATATATTGATCATAGTTAATAATATGTTTCTATA
1 AAGTTACCATGACTTAAAATATATTGATCAT-G-------TA---TT-TATA
* *
55343550 AAGTTACCATGACGTAAAATATATTGATAATGTATTTATA
1 AAGTTACCATGACTTAAAATATATTGATCATGTATTTATA
55343590 AAG
1 AAG
55343593 AGTTTTAAAT
Statistics
Matches: 81, Mismatches: 2, Indels: 24
0.76 0.02 0.22
Matches are distributed among these distances:
40 38 0.47
41 3 0.04
44 2 0.02
48 2 0.02
51 3 0.04
52 33 0.41
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (40 bp):
AAGTTACCATGACTTAAAATATATTGATCATGTATTTATA
Found at i:55351147 original size:49 final size:48
Alignment explanation
Indices: 55350924--55351147 Score: 234
Period size: 49 Copynumber: 4.6 Consensus size: 48
55350914 ATCACTAGGT
* * * * *
55350924 TGGTTAACAACTAACATGCCCTACCAGAGACCCAGCACT-TACACCAATC
1 TGGTTAGCAACTAACATGCCCTACCAGTGGCCCACCA-TATTCACC-ATC
* * * ** * *
55350973 TGGTTAGCAATTAACATGTCCTACTAGTATCCCACCTTATTCGCACATC
1 TGGTTAGCAACTAACATGCCCTACCAGTGGCCCACCATATTCAC-CATC
* * *
55351022 TGGTTAGCAACTAGCATGCCTTACCAGTGGCCCACCTTATTCACCCATC
1 TGGTTAGCAACTAACATGCCCTACCAGTGGCCCACCATATTCA-CCATC
* *
55351071 TGGTTAGCAACTAGCATGCCTTACCAGTGGCCCACCATATTCACCTATC
1 TGGTTAGCAACTAACATGCCCTACCAGTGGCCCACCATATTCACC-ATC
*
55351120 TGGTTAGCAACTAACATGCCCTGCCAGT
1 TGGTTAGCAACTAACATGCCCTACCAGT
55351148 AATCTATCTT
Statistics
Matches: 148, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.02
49 143 0.97
50 2 0.01
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (48 bp):
TGGTTAGCAACTAACATGCCCTACCAGTGGCCCACCATATTCACCATC
Found at i:55351147 original size:98 final size:98
Alignment explanation
Indices: 55350924--55351147 Score: 258
Period size: 98 Copynumber: 2.3 Consensus size: 98
55350914 ATCACTAGGT
* * *
55350924 TGGTTAACAACTAACATGCCCTACCAGAGACCCAGCACTTACACCAATCTGGTTAGCAATTAACA
1 TGGTTAGCAACTAACATGCCCTACCAGTGACCCAGCACTTACACCAATCTGGTTAGCAACTAACA
* * * *
55350989 TGTCCTACTAGTATCCCACCTTATTCGCACATC
66 TGTCCTACCAGTAGCCCACCATATTCACACATC
* * * * *
55351022 TGGTTAGCAACTAGCATGCCTTACCAGTGGCCCA-C-CTTATTCACCCATCTGGTTAGCAACTAG
1 TGGTTAGCAACTAACATGCCCTACCAGTGACCCAGCACTTA--CACCAATCTGGTTAGCAACTAA
*
55351085 CATG-CCTTACCAGTGGCCCACCATATTCAC-CTATC
64 CATGTCC-TACCAGTAGCCCACCATATTCACAC-ATC
*
55351120 TGGTTAGCAACTAACATGCCCTGCCAGT
1 TGGTTAGCAACTAACATGCCCTACCAGT
55351148 AATCTATCTT
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
96 4 0.04
97 4 0.04
98 98 0.92
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (98 bp):
TGGTTAGCAACTAACATGCCCTACCAGTGACCCAGCACTTACACCAATCTGGTTAGCAACTAACA
TGTCCTACCAGTAGCCCACCATATTCACACATC
Done.