Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 183 of 313
Found at i:56622155 original size:202 final size:202
Alignment explanation
Indices: 56621809--56622208 Score: 800
Period size: 202 Copynumber: 2.0 Consensus size: 202
56621799 CATCTTTTCA
56621809 TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
1 TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
56621874 TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
66 TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
56621939 GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
131 GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
56622004 ATTTTGG
196 ATTTTGG
56622011 TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
1 TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
56622076 TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
66 TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
56622141 GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
131 GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
56622206 ATT
196 ATT
56622209 ATCCACACCA
Statistics
Matches: 198, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 198 1.00
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (202 bp):
TTGTCTAACACACTTTTGACATTTGGATGCATGCATATATATTTAGTTTGACTCTGCAAATGAGT
TGGTATTTGACAAATTTCACTTTAGCTCCACTTTCATGAACTACAAATGAAAATTTTCCGAGGAA
GATTCCATGTTGACATCACACTATACAAACAGAAAATATTTAAATTAAGATATTTATTGATTCAT
ATTTTGG
Found at i:56623716 original size:29 final size:29
Alignment explanation
Indices: 56623682--56623737 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
56623672 AATAAAAATC
* *
56623682 ATAGGTTAATAGCTTATTTAACTACAAAA
1 ATAGGTTAAGAGCTTATTTAAATACAAAA
* *
56623711 ATAGGTTGAGGGCTTATTTAAATACAA
1 ATAGGTTAAGAGCTTATTTAAATACAA
56623738 TGTAGTGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (29 bp):
ATAGGTTAAGAGCTTATTTAAATACAAAA
Found at i:56627184 original size:180 final size:180
Alignment explanation
Indices: 56626878--56627233 Score: 667
Period size: 180 Copynumber: 2.0 Consensus size: 180
56626868 CCAATGATTT
*
56626878 TATATATTCAAGTGTCTCAGGTGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATG
1 TATATATTCAAGTGTCTCAGGCGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATG
* *
56626943 TGCAATCTTCAAACTATGGAAACAGAAAACTTGATTAGTGTTTAAGCTTCAAGACACAGCAAAGA
66 TGCAATCTTCAAACTATGGAAACAGAAAACTTGATTAATGTTTAAGCTTCAAGAAACAGCAAAGA
56627008 CGATATGAGAAAAATACAGAAAACACCCAAAAACAGAGAAAAAAAAAGAC
131 CGATATGAGAAAAATACAGAAAACACCCAAAAACAGAGAAAAAAAAAGAC
56627058 TATATATTCAAGTGTCTCAGGCGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATG
1 TATATATTCAAGTGTCTCAGGCGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATG
*
56627123 TGCAATCTTCAAACTATGGAAACAGAAAACTTGATTAATGTTTATGCTTCAAGAAACAGCAAAGA
66 TGCAATCTTCAAACTATGGAAACAGAAAACTTGATTAATGTTTAAGCTTCAAGAAACAGCAAAGA
*
56627188 TGATATGAGAAAAATACAGAAAACACCCAAAAACAGAGAAAAAAAA
131 CGATATGAGAAAAATACAGAAAACACCCAAAAACAGAGAAAAAAAA
56627234 GAAGACAGAA
Statistics
Matches: 171, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
180 171 1.00
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (180 bp):
TATATATTCAAGTGTCTCAGGCGAGTAGGATTGACGAGCTTGAGGCCAATACAGCCAGTCAAATG
TGCAATCTTCAAACTATGGAAACAGAAAACTTGATTAATGTTTAAGCTTCAAGAAACAGCAAAGA
CGATATGAGAAAAATACAGAAAACACCCAAAAACAGAGAAAAAAAAAGAC
Found at i:56631230 original size:3 final size:3
Alignment explanation
Indices: 56631224--56631251 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
56631214 ACTTAAATTT
56631224 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
56631252 ACCTTCCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:56634542 original size:66 final size:65
Alignment explanation
Indices: 56634460--56634644 Score: 183
Period size: 66 Copynumber: 2.8 Consensus size: 65
56634450 GTTAGTAGCC
*
56634460 TCACACGGCCTAGCACACGGGCGTGTGGCTTGACCATGTAACACAAATCAGTATAAC-CTCCAAT
1 TCACACGGCCTAGCACACGGGCGTGTGGCTTG-CCATGTAACACAAATCAGTAT-ACTCACCAAT
56634524 TT
64 TT
* * * *** * * *
56634526 TCACACGGCCTAGCACATGGGCATGTGGCTTGGCAGTGTCTTACAAGTCAGTATGCTCACCATTT
1 TCACACGGCCTAGCACACGGGCGTGTGGCTTGCCA-TGTAACACAAATCAGTATACTCACCAATT
56634591 T
65 T
* * * * * *
56634592 TCACATGGCCTAGCACACGAGTGTGTAGCTTGGCCATGTGACCCAAATCAGTA
1 TCACACGGCCTAGCACACGGGCGTGTGGCTT-GCCATGTAACACAAATCAGTA
56634645 ATCTTACTAG
Statistics
Matches: 94, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
65 3 0.03
66 88 0.94
67 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (65 bp):
TCACACGGCCTAGCACACGGGCGTGTGGCTTGCCATGTAACACAAATCAGTATACTCACCAATTT
Found at i:56636953 original size:23 final size:23
Alignment explanation
Indices: 56636922--56636997 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
56636912 AGTGTTATTG
56636922 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
56636945 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
56636968 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
56636991 ATCAGTG
1 ATCAGTG
56636998 TGGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:56651402 original size:3 final size:3
Alignment explanation
Indices: 56651394--56651428 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
56651384 ATCACATGTT
56651394 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
56651429 TGGATGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:56655827 original size:73 final size:73
Alignment explanation
Indices: 56655708--56655893 Score: 363
Period size: 73 Copynumber: 2.5 Consensus size: 73
56655698 TATTATTATT
*
56655708 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
56655773 ATTTTAAG
66 ATTTTAAG
56655781 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
56655846 ATTTTAAG
66 ATTTTAAG
56655854 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
56655894 GTCAAGTTGT
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 112 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:56658009 original size:18 final size:18
Alignment explanation
Indices: 56657977--56658048 Score: 69
Period size: 18 Copynumber: 4.1 Consensus size: 18
56657967 TTGGAGAACA
*
56657977 CGCAGTCTTGAGTGAGCT
1 CGCAGTTTTGAGTGAGCT
* *
56657995 TGCAGTTTTGGGTGAGCT
1 CGCAGTTTTGAGTGAGCT
*
56658013 CGCAGCTTT--GTAGAGCT
1 CGCAGTTTTGAGT-GAGCT
*
56658030 CGCACTTTTG-GTGAGCT
1 CGCAGTTTTGAGTGAGCT
56658047 CG
1 CG
56658049 TAGTCTTGCA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
16 2 0.04
17 19 0.42
18 24 0.53
ACGTcount: A:0.14, C:0.21, G:0.33, T:0.32
Consensus pattern (18 bp):
CGCAGTTTTGAGTGAGCT
Found at i:56658039 original size:17 final size:17
Alignment explanation
Indices: 56657946--56658048 Score: 70
Period size: 17 Copynumber: 5.9 Consensus size: 17
56657936 GAGACTTCGT
*
56657946 AGCTTTGATGAGCTCGC
1 AGCTTTGGTGAGCTCGC
* * *
56657963 A-CTATTGGAGAACACGC
1 AGCT-TTGGTGAGCTCGC
*
56657980 AG-TCTTGAGTGAGCTTGC
1 AGCT-TTG-GTGAGCTCGC
*
56657998 AGTTTTGGGTGAGCTCGC
1 AGCTTT-GGTGAGCTCGC
56658016 AGCTTT-GTAGAGCTCGC
1 AGCTTTGGT-GAGCTCGC
56658033 A-CTTTTGGTGAGCTCG
1 AGC-TTTGGTGAGCTCG
56658049 TAGTCTTGCA
Statistics
Matches: 67, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
16 5 0.07
17 34 0.51
18 26 0.39
19 2 0.03
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.30
Consensus pattern (17 bp):
AGCTTTGGTGAGCTCGC
Found at i:56658048 original size:34 final size:34
Alignment explanation
Indices: 56657922--56658048 Score: 98
Period size: 34 Copynumber: 3.7 Consensus size: 34
56657912 TCACCTAACA
* *
56657922 AGCTTGCACTTTTGGAGA-CTTCGTAGCTTTG-ATG
1 AGCTCGCACTTTTGGAGAGC-TCGCAGCTTTGTA-G
* * * *
56657956 AGCTCGCACTATTGGAGAACACGCAGTCTTGAGT-G
1 AGCTCGCACTTTTGGAGAGCTCGCAG-CTT-TGTAG
* * *
56657991 AGCTTGCAGTTTTGGGTGAGCTCGCAGCTTTGTAG
1 AGCTCGCACTTTT-GGAGAGCTCGCAGCTTTGTAG
*
56658026 AGCTCGCACTTTTGGTGAGCTCG
1 AGCTCGCACTTTTGGAGAGCTCG
56658049 TAGTCTTGCA
Statistics
Matches: 73, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
34 32 0.44
35 30 0.41
36 11 0.15
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.31
Consensus pattern (34 bp):
AGCTCGCACTTTTGGAGAGCTCGCAGCTTTGTAG
Found at i:56670600 original size:11 final size:11
Alignment explanation
Indices: 56670580--56670640 Score: 81
Period size: 11 Copynumber: 5.6 Consensus size: 11
56670570 ATTTTTTTAA
56670580 AAAAAGTATTTT
1 AAAAA-TATTTT
56670592 AAAAATATTTT
1 AAAAATATTTT
**
56670603 AAAAATA--AA
1 AAAAATATTTT
56670612 AAAAATATTTT
1 AAAAATATTTT
56670623 AAAAATATTTT
1 AAAAATATTTT
56670634 AAAAATA
1 AAAAATA
56670641 AAAAAAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
9 7 0.16
11 31 0.72
12 5 0.12
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:56670649 original size:20 final size:20
Alignment explanation
Indices: 56670592--56670629 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
56670582 AAAGTATTTT
56670592 AAAAATATTTTAAAAATAAA
1 AAAAATATTTTAAAAATAAA
56670612 AAAAATATTTTAAAAATA
1 AAAAATATTTTAAAAATA
56670630 TTTTAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATATTTTAAAAATAAA
Found at i:56670662 original size:31 final size:31
Alignment explanation
Indices: 56670577--56670655 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
56670567 CAAATTTTTT
*
56670577 TAAAAAAAGTATTTTAAAAATATTTTAAAAA
1 TAAAAAAAATATTTTAAAAATATTTTAAAAA
56670608 TAAAAAAAATATTTTAAAAATATTTTAAAAA
1 TAAAAAAAATATTTTAAAAATATTTTAAAAA
56670639 TAAAAAAAATATATTTA
1 TAAAAAAAATAT-TTTA
56670656 TTATATTCGG
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 42 0.91
32 4 0.09
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (31 bp):
TAAAAAAAATATTTTAAAAATATTTTAAAAA
Found at i:56672791 original size:28 final size:28
Alignment explanation
Indices: 56672754--56672809 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
56672744 ATACATGTTA
* *
56672754 TTAATTGTGTTACTACCTTCATGGTATT
1 TTAATCGTGTTACTACCTTCATGATATT
*
56672782 TTAATCGTGTTACTATCTTCATGATATT
1 TTAATCGTGTTACTACCTTCATGATATT
56672810 AATTGTGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.23, C:0.14, G:0.12, T:0.50
Consensus pattern (28 bp):
TTAATCGTGTTACTACCTTCATGATATT
Found at i:56675187 original size:18 final size:18
Alignment explanation
Indices: 56675164--56675206 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
56675154 TGCCAAGTGC
* *
56675164 GTATCCTATCCCTTTTAT
1 GTATCCTAACCCTTATAT
56675182 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
56675200 GTTTCCT
1 GTATCCT
56675207 TTTCCCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.07, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:56675801 original size:27 final size:27
Alignment explanation
Indices: 56675760--56675849 Score: 74
Period size: 33 Copynumber: 3.1 Consensus size: 27
56675750 CCCTAACCCT
*
56675760 AACCC-AACCCTAACCTTTAACTTAAA
1 AACCCTAACCATAACCTTTAACTTAAA
*
56675786 AACCCTAACTATAACCCTAACCATTAACTTAAA
1 AACCCTAACCATAA-CCT-----TTAACTTAAA
* * *
56675819 AACTCTAACCCTAACCCTTAACTTAAA
1 AACCCTAACCATAACCTTTAACTTAAA
56675846 AACC
1 AACC
56675850 TTTAACTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
26 5 0.10
27 19 0.38
28 3 0.06
32 2 0.04
33 21 0.42
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (27 bp):
AACCCTAACCATAACCTTTAACTTAAA
Found at i:56675806 original size:33 final size:29
Alignment explanation
Indices: 56675765--56675849 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 29
56675755 ACCCTAACCC
*
56675765 AACCCTAACCTTTAACTTAAAAACCCTAACTAT
1 AACCCTAACCATTAACTTAAAAACCCT--C--T
56675798 AACCCTAACCATTAACTTAAAAA--CTCT
1 AACCCTAACCATTAACTTAAAAACCCTCT
*
56675825 AACCCTAACCCTTAACTTAAAAACC
1 AACCCTAACCATTAACTTAAAAACC
56675850 TTTAACTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
27 23 0.48
29 1 0.02
31 2 0.04
33 22 0.46
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.25
Consensus pattern (29 bp):
AACCCTAACCATTAACTTAAAAACCCTCT
Found at i:56675861 original size:14 final size:15
Alignment explanation
Indices: 56675831--56675863 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
56675821 CTCTAACCCT
56675831 AACCCTTAACTTAAA
1 AACCCTTAACTTAAA
*
56675846 AACCTTTAACTTAAA
1 AACCCTTAACTTAAA
56675861 AAC
1 AAC
56675864 ACCAAAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.27
Consensus pattern (15 bp):
AACCCTTAACTTAAA
Found at i:56676005 original size:6 final size:6
Alignment explanation
Indices: 56675988--56676044 Score: 60
Period size: 6 Copynumber: 9.0 Consensus size: 6
56675978 CCCTAACAAA
* **
56675988 AACCCT AGCCCT AACCCT AACCCTT AACTTATT AACCCT AACCCT AACCCT
1 AACCCT AACCCT AACCCT AACCC-T AAC--CCT AACCCT AACCCT AACCCT
56676039 AACCCT
1 AACCCT
56676045 TAACTTAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
6 34 0.81
7 4 0.10
8 4 0.10
ACGTcount: A:0.32, C:0.44, G:0.02, T:0.23
Consensus pattern (6 bp):
AACCCT
Found at i:56676033 original size:33 final size:33
Alignment explanation
Indices: 56675988--56676051 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
56675978 CCCTAACAAA
*
56675988 AACCCTAGCCCTAACCCTAACCCTTAACTTATT
1 AACCCTAACCCTAACCCTAACCCTTAACTTATT
56676021 AACCCTAACCCTAACCCTAACCCTTAACTTA
1 AACCCTAACCCTAACCCTAACCCTTAACTTA
56676052 AAAACACCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.41, G:0.02, T:0.25
Consensus pattern (33 bp):
AACCCTAACCCTAACCCTAACCCTTAACTTATT
Found at i:56676033 original size:101 final size:103
Alignment explanation
Indices: 56675823--56676056 Score: 330
Period size: 107 Copynumber: 2.3 Consensus size: 103
56675813 CTTAAAAACT
* *
56675823 CTAACCCTAACCCTTAACTTAAAAACCTTTAACTTAAAAACACCAAAACCCTAACAAAAACCCAA
1 CTAACCCTAACCCTTAACTTAAAAACCCTTAAATTAAAAACACCAAAACCCTAACAAAAACCCAA
* *
56675888 GCCCTAGCCCTAACCCTTAATTTAAAAATCCTAACCATAACC
66 GCCCTAACCCTAACCCTTAACTT---AAT-CTAACCATAACC
* * *
56675930 CTAACTCC-AACCCTTAACTTAAAAACCCTTAAATTAATAACACTAAAACCCTAACAAAAACCCT
1 CTAAC-CCTAACCCTTAACTTAAAAACCCTTAAATTAAAAACACCAAAACCCTAACAAAAACCCA
*
56675994 AGCCCTAACCCTAACCCTTAACTT-AT-TAACCCTAACC
65 AGCCCTAACCCTAACCCTTAACTTAATCTAACCATAACC
56676031 CTAACCCTAACCCTTAACTTAAAAAC
1 CTAACCCTAACCCTTAACTTAAAAAC
56676057 ACCAAAACCC
Statistics
Matches: 117, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
100 2 0.02
101 33 0.28
103 2 0.02
107 78 0.67
108 2 0.02
ACGTcount: A:0.43, C:0.34, G:0.01, T:0.22
Consensus pattern (103 bp):
CTAACCCTAACCCTTAACTTAAAAACCCTTAAATTAAAAACACCAAAACCCTAACAAAAACCCAA
GCCCTAACCCTAACCCTTAACTTAATCTAACCATAACC
Found at i:56676093 original size:18 final size:18
Alignment explanation
Indices: 56676060--56676094 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
56676050 TAAAAACACC
**
56676060 AAAACCCTAATGCTAACA
1 AAAACCCTAACCCTAACA
56676078 AAAACCCTAACCCTAAC
1 AAAACCCTAACCCTAAC
56676095 CCTAATATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.34, G:0.03, T:0.14
Consensus pattern (18 bp):
AAAACCCTAACCCTAACA
Found at i:56676162 original size:19 final size:19
Alignment explanation
Indices: 56676114--56676164 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
56676104 ATATAATTTG
56676114 ATAATTTTACTAACAATTA
1 ATAATTTTACTAACAATTA
*
56676133 ATACA----ATTAACAATTA
1 ATA-ATTTTACTAACAATTA
56676149 ATAATTTTACTAACAA
1 ATAATTTTACTAACAA
56676165 AATGTTAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
15 1 0.04
16 13 0.52
19 10 0.40
20 1 0.04
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAATTTTACTAACAATTA
Found at i:56676242 original size:22 final size:23
Alignment explanation
Indices: 56676217--56676265 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
56676207 TAATTTGATA
* *
56676217 TAATTTTAATAACAAT-TAGTTT
1 TAATTTTAATAAAAATATAATTT
56676239 TAATTTTAATAAAAATATAATTT
1 TAATTTTAATAAAAATATAATTT
56676262 TAAT
1 TAAT
56676266 AAACCGGGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
TAATTTTAATAAAAATATAATTT
Found at i:56676768 original size:28 final size:30
Alignment explanation
Indices: 56676727--56676787 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
56676717 TTTAATAAAT
56676727 AAATACATATTATTTA-TTTTTTAATTTTA
1 AAATACATATTATTTATTTTTTTAATTTTA
* *
56676756 AAATAC-TTTTATTTATTTTTTTTATTTTA
1 AAATACATATTATTTATTTTTTTAATTTTA
56676785 AAA
1 AAA
56676788 ATAATTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (30 bp):
AAATACATATTATTTATTTTTTTAATTTTA
Found at i:56677000 original size:7 final size:7
Alignment explanation
Indices: 56676990--56677020 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
56676980 CTTAACCCTA
56676990 AAACTCT
1 AAACTCT
56676997 AAACTCT
1 AAACTCT
56677004 AAACTCT
1 AAACTCT
*
56677011 AAACCCT
1 AAACTCT
56677018 AAA
1 AAA
56677021 AGTGCAGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.48, C:0.29, G:0.00, T:0.23
Consensus pattern (7 bp):
AAACTCT
Found at i:56677009 original size:14 final size:14
Alignment explanation
Indices: 56676983--56677020 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
56676973 TTTAATTCTT
56676983 AACCCTAAAACTCTA
1 AACCCT-AAACTCTA
*
56676998 AACTCTAAACTCTA
1 AACCCTAAACTCTA
56677012 AACCCTAAA
1 AACCCTAAA
56677021 AGTGCAGGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCCTAAACTCTA
Found at i:56679267 original size:44 final size:44
Alignment explanation
Indices: 56679202--56679306 Score: 135
Period size: 44 Copynumber: 2.4 Consensus size: 44
56679192 GATTTAATTT
* * * *
56679202 TTAAATTTTTAGTTT-AA-TAGATTTCTAGATCTTTTAGCTGAA
1 TTAAGTTTTAAGTTTAAATTAGATTTCTAAATCTTTTAGCTCAA
*
56679244 TTAAGTTTTAAGTTTAAATTAGATTTTTAAATCTTTTAGCTCAA
1 TTAAGTTTTAAGTTTAAATTAGATTTCTAAATCTTTTAGCTCAA
56679288 TTAGAG-TTTAAGTTTAAAT
1 TTA-AGTTTTAAGTTTAAAT
56679307 CTTTAATTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
42 13 0.24
43 2 0.04
44 38 0.69
45 2 0.04
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (44 bp):
TTAAGTTTTAAGTTTAAATTAGATTTCTAAATCTTTTAGCTCAA
Found at i:56680659 original size:24 final size:24
Alignment explanation
Indices: 56680630--56680677 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
56680620 TTTGAAATTC
* *
56680630 TCTCGAATCGAGTCGAGTGAAATG
1 TCTCGAATCAAGTCAAGTGAAATG
*
56680654 TCTCGAATCAAGTTAAGTGAAATG
1 TCTCGAATCAAGTCAAGTGAAATG
56680678 AAATTCTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (24 bp):
TCTCGAATCAAGTCAAGTGAAATG
Found at i:56681135 original size:9 final size:9
Alignment explanation
Indices: 56681113--56681145 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
56681103 ATTCGAAAAA
56681113 AATTCGAGTT
1 AATTCGA-TT
56681123 AATTCGATT
1 AATTCGATT
56681132 AATTCGATT
1 AATTCGATT
56681141 AATTC
1 AATTC
56681146 TATTCGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (9 bp):
AATTCGATT
Found at i:56683362 original size:39 final size:40
Alignment explanation
Indices: 56683290--56683371 Score: 112
Period size: 39 Copynumber: 2.1 Consensus size: 40
56683280 TCATGAATTA
* * *
56683290 TTGTTTCCACGTCAGCAATTCGCGCTTACGTGGACGCGAT
1 TTGTTGCCACGTAAGCAATTCGCGCTGACGTGGACGCGAT
* *
56683330 TTGTTGCCACGTAAGTAA-TCGCGCTGATGTGGACGCGAT
1 TTGTTGCCACGTAAGCAATTCGCGCTGACGTGGACGCGAT
56683369 TTG
1 TTG
56683372 CTGACACATC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 22 0.59
40 15 0.41
ACGTcount: A:0.18, C:0.23, G:0.28, T:0.30
Consensus pattern (40 bp):
TTGTTGCCACGTAAGCAATTCGCGCTGACGTGGACGCGAT
Found at i:56683702 original size:18 final size:18
Alignment explanation
Indices: 56683676--56683734 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
56683666 AAGGGTTAAT
*
56683676 TTTATTTTTTA-AATATTA
1 TTTAATTTTTATAAT-TTA
56683694 TTTAATTTTTATAATTTAA
1 TTTAATTTTTATAATTT-A
*
56683713 TTAATATTTTTATAATTT-
1 TTTA-ATTTTTATAATTTA
56683731 TTTA
1 TTTA
56683735 TAATAGTCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
18 15 0.43
19 7 0.20
20 13 0.37
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTAATTTTTATAATTTA
Found at i:56684674 original size:7 final size:7
Alignment explanation
Indices: 56684659--56684696 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
56684649 AACATAGTCG
*
56684659 ATTTCGT
1 ATTTAGT
56684666 ATTTAGT
1 ATTTAGT
56684673 ATTTAGT
1 ATTTAGT
56684680 ATTTAGT
1 ATTTAGT
56684687 ATTTAGT
1 ATTTAGT
56684694 ATT
1 ATT
56684697 ATGTATATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (7 bp):
ATTTAGT
Found at i:56686956 original size:25 final size:24
Alignment explanation
Indices: 56686919--56687032 Score: 93
Period size: 25 Copynumber: 4.5 Consensus size: 24
56686909 GACTCACCAC
*
56686919 AGCTCGTATGAGCTTACCGATTTAT
1 AGCTCGTAAGAGCTTACCGATTT-T
* *
56686944 AGCTCGTAAGAGCTTTCCGATTCTC
1 AGCTCGTAAGAGCTTACCGATT-TT
* *
56686969 AGCTCGTATGAGCTTATCGTATTTT
1 AGCTCGTAAGAGCTTACCG-ATTTT
* * *
56686994 AACTNACGGAAGAGCTTACCGATTAT
1 AGCT--CGTAAGAGCTTACCGATTTT
* *
56687020 GGGTCGTAAGAGC
1 AGCTCGTAAGAGC
56687033 ATACATGTAC
Statistics
Matches: 69, Mismatches: 16, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
24 8 0.12
25 40 0.58
26 9 0.13
27 12 0.17
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACCGATTTT
Found at i:56699976 original size:3 final size:3
Alignment explanation
Indices: 56699968--56700003 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
56699958 TAGACTGAGG
*
56699968 GAA GAA GAA GAA GAA GAA AAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
56700004 ATTTGGAGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:56702702 original size:101 final size:101
Alignment explanation
Indices: 56702587--56702825 Score: 406
Period size: 101 Copynumber: 2.4 Consensus size: 101
56702577 AAAGTGATGG
* * *
56702587 TCACGTTTGTAGTACTATGTGTAGGTTACTACGTGTACCAGAATGATAAGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAAAATGATAAGTCGCATGTGTAGTAC
* *
56702652 TATGTGCAGGCTACTATGCGTATCGGATAGCTTCGA
66 TATGTGCAGGATACTATGCGTACCGGATAGCTTCGA
* *
56702688 TCACGTGTGTAGTACTATGCGTAGGCTACTACGTGTACCAAAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAAAATGATAAGTCGCATGTGTAGTAC
56702753 TATGTGCAGGATACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGATACTATGCGTACCGGATAGCTTCGA
*
56702789 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTA
56702826 TCGGATAGTG
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 129 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAAAATGATAAGTCGCATGTGTAGTAC
TATGTGCAGGATACTATGCGTACCGGATAGCTTCGA
Found at i:56702849 original size:51 final size:52
Alignment explanation
Indices: 56702579--56702852 Score: 235
Period size: 51 Copynumber: 5.4 Consensus size: 52
56702569 TGAAAGTGAA
* * * * *
56702579 AGTGAT-GGTCACGTTTGTAGTACTATGTGTAGGTTACTACGTGTACCAGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * *
56702629 A-TGATAAGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * * *
56702680 AGCT--TCGATCACGTGTGTAGTACTATGCGTAGGCTACTACGTGTACC--AA
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * *
56702729 AATGATAGGTCGCATGTGTAGTACTATGTGCAGGATACTATGCGTACCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * *
56702781 AGCT--TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
56702832 AGTGAT-GGTCACATGTGTAGT
1 AGTGATAGGTCACATGTGTAGT
56702853 GTAGTACTAT
Statistics
Matches: 170, Mismatches: 43, Indels: 21
0.73 0.18 0.09
Matches are distributed among these distances:
48 1 0.01
49 6 0.04
50 70 0.41
51 88 0.52
52 3 0.02
53 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
Found at i:56702995 original size:42 final size:43
Alignment explanation
Indices: 56702887--56703094 Score: 264
Period size: 43 Copynumber: 4.9 Consensus size: 43
56702877 GTGAATCCGC
56702887 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* * * * *
56702930 ATTATTGACTGTGAAAGG-GGTTGCTATGTGCTGATTCC-CCGC
1 ATCATTGAATAT-AAAGGTGGTTGCTAAGTGCTGATTCCACCGT
56702972 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* * * *
56703015 ATTATTGACTGTGAAAGG-GGTTGCTATGTGCTGATTCC-CCGT
1 ATCATTGAATAT-AAAGGTGGTTGCTAAGTGCTGATTCCACCGT
* *
56703057 ATCATTGATTAT-AAGGTGGTTGCTAAGTGTTGATTCCA
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCA
56703095 TCGTGTAACG
Statistics
Matches: 140, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
40 4 0.03
41 23 0.16
42 44 0.31
43 59 0.42
44 10 0.07
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (43 bp):
ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
Found at i:56703026 original size:85 final size:85
Alignment explanation
Indices: 56702883--56703094 Score: 390
Period size: 85 Copynumber: 2.5 Consensus size: 85
56702873 CTATGTGAAT
56702883 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATTATTGACTGTGAAAGG
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATTATTGACTGTGAAAGG
56702948 GGTTGCTATGTGCTGATTCC
66 GGTTGCTATGTGCTGATTCC
56702968 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATTATTGACTGTGAAAGG
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATTATTGACTGTGAAAGG
56703033 GGTTGCTATGTGCTGATTCC
66 GGTTGCTATGTGCTGATTCC
* * *
56703053 CCGTATCATTGATTAT-AAGGTGGTTGCTAAGTGTTGATTCCA
1 CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCA
56703095 TCGTGTAACG
Statistics
Matches: 124, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
84 25 0.20
85 99 0.80
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (85 bp):
CCGCATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATTATTGACTGTGAAAGG
GGTTGCTATGTGCTGATTCC
Found at i:56710832 original size:23 final size:23
Alignment explanation
Indices: 56710800--56710843 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
56710790 CCTAGGTCAG
*
56710800 GTATTGGGGTATTACATTTAGTT
1 GTATTAGGGTATTACATTTAGTT
56710823 GTATTAGGGTATTACATTTAG
1 GTATTAGGGTATTACATTTAG
56710844 GGGACCCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.25, C:0.05, G:0.25, T:0.45
Consensus pattern (23 bp):
GTATTAGGGTATTACATTTAGTT
Found at i:56715516 original size:16 final size:16
Alignment explanation
Indices: 56715495--56715525 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56715485 GAGTACACCA
56715495 CATCACTCTACTAGCT
1 CATCACTCTACTAGCT
*
56715511 CATCACTTTACTAGC
1 CATCACTCTACTAGC
56715526 AGGGTGGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.35, G:0.06, T:0.32
Consensus pattern (16 bp):
CATCACTCTACTAGCT
Found at i:56715613 original size:32 final size:32
Alignment explanation
Indices: 56715545--56715615 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
56715535 AGCTAGAGAG
* * * *
56715545 TGGCAAGTTGGCGAGGAGGCGAGATAGTAGAG
1 TGGCAAGTTAGCGAGGAGGCGAGATAGCAAAA
56715577 TGGCAAGTTAGCGAGGAGGCGA-ACTAGCAAAA
1 TGGCAAGTTAGCGAGGAGGCGAGA-TAGCAAAA
56715609 TGGCAAG
1 TGGCAAG
56715616 CTAGAAAGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 1 0.03
32 33 0.97
ACGTcount: A:0.32, C:0.13, G:0.41, T:0.14
Consensus pattern (32 bp):
TGGCAAGTTAGCGAGGAGGCGAGATAGCAAAA
Found at i:56715696 original size:16 final size:16
Alignment explanation
Indices: 56715664--56715767 Score: 75
Period size: 16 Copynumber: 6.5 Consensus size: 16
56715654 AAATGGTGAC
*
56715664 GAGCTAGC-AGAGTGGT
1 GAGCTAGCGAG-GAGGT
*
56715680 GAGGTAGCGAGGAGGT
1 GAGCTAGCGAGGAGGT
* * * *
56715696 GAGCTAGCAAAGTGGC
1 GAGCTAGCGAGGAGGT
*
56715712 GAGCTAGCGAGGAGGC
1 GAGCTAGCGAGGAGGT
* * *
56715728 AAGCTAGCAATGAGGT
1 GAGCTAGCGAGGAGGT
* * *
56715744 GAGCTAACAAGGAGGC
1 GAGCTAGCGAGGAGGT
56715760 GAGCTAGC
1 GAGCTAGC
56715768 AGAGAGTGGC
Statistics
Matches: 68, Mismatches: 19, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
16 66 0.97
17 2 0.03
ACGTcount: A:0.30, C:0.15, G:0.42, T:0.12
Consensus pattern (16 bp):
GAGCTAGCGAGGAGGT
Found at i:56715704 original size:32 final size:32
Alignment explanation
Indices: 56715663--56715771 Score: 130
Period size: 32 Copynumber: 3.4 Consensus size: 32
56715653 TAAATGGTGA
*
56715663 CGAGCTAGCAGAGTGGTGAGGTAGCGAGGAGG
1 CGAGCTAGCAGAGTGGTGAGCTAGCGAGGAGG
* * *
56715695 TGAGCTAGCAAAGTGGCGAGCTAGCGAGGAGG
1 CGAGCTAGCAGAGTGGTGAGCTAGCGAGGAGG
* * * *
56715727 CAAGCTAGCA-ATGAGGTGAGCTAACAAGGAGG
1 CGAGCTAGCAGA-GTGGTGAGCTAGCGAGGAGG
56715759 CGAGCTAGCAGAG
1 CGAGCTAGCAGAG
56715772 AGTGGCAAGC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
31 1 0.02
32 62 0.97
33 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.42, T:0.12
Consensus pattern (32 bp):
CGAGCTAGCAGAGTGGTGAGCTAGCGAGGAGG
Found at i:56715717 original size:48 final size:48
Alignment explanation
Indices: 56715562--56715780 Score: 122
Period size: 48 Copynumber: 4.5 Consensus size: 48
56715552 TTGGCGAGGA
* * * * * *
56715562 GGCGAGATAGTAGAGTGGCAAGTTAGCGAGGAGGCGAACTAGCAAAAT
1 GGCGAGCTAGCAGAGTGGCAAGGTAGCGAGGAGGTGAGCTAGCAAAGT
* * ** * * *
56715610 GGCAAGCTAG-AAAGTGG-TGGGCTAGC-AGATAGTGATTAGCTAGTAAATGGT
1 GGCGAGCTAGCAGAGTGGCAAGG-TAGCGAG-GAG-G-TGAGCTAGCAAA--GT
* **
56715661 GACGAGCTAGCAGAGTGGTGAGGTAGCGAGGAGGTGAGCTAGCAAAGT
1 GGCGAGCTAGCAGAGTGGCAAGGTAGCGAGGAGGTGAGCTAGCAAAGT
* * * * * * *
56715709 GGCGAGCTAGC-GAGGAGGCAAGCTAGCAATGAGGTGAGCTAACAAGGA
1 GGCGAGCTAGCAGA-GTGGCAAGGTAGCGAGGAGGTGAGCTAGCAAAGT
56715757 GGCGAGCTAGCAGAGAGTGGCAAG
1 GGCGAGCTAGC--AGAGTGGCAAG
56715781 CTAGTAGAGT
Statistics
Matches: 127, Mismatches: 31, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
46 3 0.02
47 14 0.11
48 57 0.45
49 8 0.06
50 17 0.13
51 12 0.09
52 12 0.09
53 4 0.03
ACGTcount: A:0.32, C:0.13, G:0.40, T:0.15
Consensus pattern (48 bp):
GGCGAGCTAGCAGAGTGGCAAGGTAGCGAGGAGGTGAGCTAGCAAAGT
Found at i:56715791 original size:16 final size:16
Alignment explanation
Indices: 56715770--56715805 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
56715760 GAGCTAGCAG
*
56715770 AGAGTGGCAAGCTAGT
1 AGAGTGGCAAGCTACT
*
56715786 AGAGTGGCGAGCTACT
1 AGAGTGGCAAGCTACT
56715802 AGAG
1 AGAG
56715806 AGTCGCGAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.39, T:0.17
Consensus pattern (16 bp):
AGAGTGGCAAGCTACT
Found at i:56715807 original size:18 final size:18
Alignment explanation
Indices: 56715757--56715814 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
56715747 CTAACAAGGA
56715757 GGCGAGCTAGC-AGAGAGT
1 GGCGAGCTA-CTAGAGAGT
* *
56715775 GGCAAGCTAGT--AGAGT
1 GGCGAGCTACTAGAGAGT
56715791 GGCGAGCTACTAGAGAGT
1 GGCGAGCTACTAGAGAGT
*
56715809 CGCGAG
1 GGCGAG
56715815 GTGGTGTCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 14 0.44
18 18 0.56
ACGTcount: A:0.28, C:0.17, G:0.41, T:0.14
Consensus pattern (18 bp):
GGCGAGCTACTAGAGAGT
Found at i:56717182 original size:23 final size:23
Alignment explanation
Indices: 56717147--56717205 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
56717137 TGACTAGACC
* *
56717147 AAAAATTTA-AAAATAATAATAAT
1 AAAAA-TTAGAAAAAAATAATAAG
* *
56717170 AAAAATTAGAAAAAAATATTGAG
1 AAAAATTAGAAAAAAATAATAAG
56717193 AAAAATATAGAAA
1 AAAAAT-TAGAAA
56717206 TTGTAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 3 0.10
23 21 0.70
24 6 0.20
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (23 bp):
AAAAATTAGAAAAAAATAATAAG
Found at i:56717215 original size:17 final size:16
Alignment explanation
Indices: 56717193--56717305 Score: 66
Period size: 18 Copynumber: 6.3 Consensus size: 16
56717183 AAATATTGAG
56717193 AAAAATATAGAAATTGT
1 AAAAATATA-AAATTGT
* *
56717210 AAAAATATTTAAATTATT
1 AAAAATA-TAAAATT-GT
56717228 AAAAATATCAAAATTTGT
1 AAAAATAT-AAAA-TTGT
*
56717246 AAAAATA-AATATTGT
1 AAAAATATAAAATTGT
*
56717261 AAATAATAATTAAATATTTTT
1 AAA-AAT-A-TAAA-A-TTGT
56717282 AAAAATATTTTAAAATTGT
1 AAAAATA---TAAAATTGT
56717301 AAAAA
1 AAAAA
56717306 AGTTATTGAA
Statistics
Matches: 76, Mismatches: 8, Indels: 22
0.72 0.08 0.21
Matches are distributed among these distances:
15 7 0.09
16 6 0.08
17 14 0.18
18 20 0.26
19 13 0.17
20 5 0.07
21 11 0.14
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.37
Consensus pattern (16 bp):
AAAAATATAAAATTGT
Found at i:56717287 original size:54 final size:52
Alignment explanation
Indices: 56717205--56717323 Score: 127
Period size: 54 Copynumber: 2.3 Consensus size: 52
56717195 AAATATAGAA
*
56717205 ATTGTAAA-AAT-ATTTAAATTATTAAAAATA-TCAAAATTTGTAAAAATAAAT
1 ATTGTAAATAATAATTAAAATTATTAAAAATATTCAAAA-TTGTAAAAA-AAAT
* * **
56717256 ATTGTAAATAATAATTAAATATTTTTAAAAATATTTTAAAATTGTAAAAAAGTT
1 ATTGTAAATAATAATTAAA-ATTATTAAAAATA-TTCAAAATTGTAAAAAAAAT
*
56717310 ATTGAAAATAATAA
1 ATTGTAAATAATAA
56717324 AACATTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
51 8 0.14
52 3 0.05
53 5 0.09
54 27 0.47
55 9 0.16
56 5 0.09
ACGTcount: A:0.55, C:0.01, G:0.05, T:0.39
Consensus pattern (52 bp):
ATTGTAAATAATAATTAAAATTATTAAAAATATTCAAAATTGTAAAAAAAAT
Found at i:56717305 original size:20 final size:20
Alignment explanation
Indices: 56717251--56717306 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
56717241 TTTGTAAAAA
*
56717251 TAAATATTGTAAATAATAAT
1 TAAATATTGTAAAAAATAAT
* * *
56717271 TAAATATTTTTAAAAATATTT
1 TAAATATTGTAAAAAATA-AT
56717292 TAAA-ATTGTAAAAAA
1 TAAATATTGTAAAAAA
56717307 GTTATTGAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (20 bp):
TAAATATTGTAAAAAATAAT
Found at i:56717643 original size:20 final size:19
Alignment explanation
Indices: 56717588--56717746 Score: 67
Period size: 20 Copynumber: 8.2 Consensus size: 19
56717578 ATTTGCAATT
56717588 TTTTTAATAATTTTTATAAA
1 TTTTTAATAATTTTTAT-AA
* * *
56717608 TTTTAAAAAATGTTTTGTAA
1 TTTTTAATAAT-TTTTATAA
*
56717628 TTTTTAATAACTTTTTTTAAA
1 TTTTTAATAA-TTTTTAT-AA
* * * *
56717649 ATTTTAAGTTATTTTCAACAA
1 TTTTTAA-TAATTTT-TATAA
* **
56717670 TATTTAATAATTATTTGCAA
1 TTTTTAATAATT-TTTATAA
*
56717690 -TATT--TAATTTTTATAA
1 TTTTTAATAATTTTTATAA
*
56717706 TTTTTAAT-TTTTTTAATAA
1 TTTTTAATAATTTTT-ATAA
* * *
56717725 -TTTAAATATTTTTTACAA
1 TTTTTAATAATTTTTATAA
56717743 TTTT
1 TTTT
56717747 ATATTTTTTA
Statistics
Matches: 103, Mismatches: 24, Indels: 25
0.68 0.16 0.16
Matches are distributed among these distances:
16 5 0.05
17 8 0.08
18 14 0.14
19 16 0.16
20 31 0.30
21 27 0.26
22 2 0.02
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTTAATAATTTTTATAA
Found at i:56717654 original size:21 final size:19
Alignment explanation
Indices: 56717589--56717760 Score: 67
Period size: 21 Copynumber: 9.1 Consensus size: 19
56717579 TTTGCAATTT
56717589 TTTTAATAATTTTTATAAA
1 TTTTAATAATTTTTATAAA
* * *
56717608 TTTTAAAAAATGTTTTGTAAT
1 TTTT-AATAAT-TTTTATAAA
*
56717629 TTTTAATAACTTTTTTTAAAA
1 TTTTAATAA-TTTTTAT-AAA
* *
56717650 TTTTAAGTTATTTTCA-ACAA
1 TTTTAA-TAATTTTTATA-AA
**
56717670 TATTTAATAATTATTT-GCAA
1 T-TTTAATAATT-TTTATAAA
* *
56717690 TATT--TAATTTTTATAAT
1 TTTTAATAATTTTTATAAA
*
56717707 TTTTAAT-TTTTTTA-ATAA
1 TTTTAATAATTTTTATA-AA
*
56717725 TTTAAAT-ATTTTT-TACAA
1 TTTTAATAATTTTTATA-AA
*
56717743 TTTT-ATATTTTTTA-AAA
1 TTTTAATAATTTTTATAAA
56717760 T
1 T
56717761 ATTTTTTATG
Statistics
Matches: 113, Mismatches: 24, Indels: 34
0.66 0.14 0.20
Matches are distributed among these distances:
16 3 0.03
17 15 0.13
18 30 0.27
19 8 0.07
20 24 0.21
21 31 0.27
22 2 0.02
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTTAATAATTTTTATAAA
Found at i:56717713 original size:16 final size:16
Alignment explanation
Indices: 56717692--56717722 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56717682 ATTTGCAATA
56717692 TTTAATTTTTATAATT
1 TTTAATTTTTATAATT
*
56717708 TTTAATTTTTTTAAT
1 TTTAATTTTTATAAT
56717723 AATTTAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTAATTTTTATAATT
Found at i:56717720 original size:18 final size:17
Alignment explanation
Indices: 56717697--56717755 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 17
56717687 CAATATTTAA
56717697 TTTTTATAATTTTTAATT
1 TTTTTATAA-TTTTAATT
*
56717715 TTTTTAATAATTTAAATAT
1 TTTTT-ATAATTTTAAT-T
*
56717734 TTTTTACAATTTTATATT
1 TTTTTATAATTTTA-ATT
56717752 TTTT
1 TTTT
56717756 AAAATATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
18 23 0.66
19 12 0.34
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTATAATTTTAATT
Found at i:56719226 original size:26 final size:26
Alignment explanation
Indices: 56719169--56719219 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
56719159 AAAAAACCTT
* **
56719169 AAAAATCT-TTAAAAATGGAAAAATA
1 AAAAATTTATTAAAAATAAAAAAATA
56719194 AAAAATTTATTAAAAATAAAAAAATA
1 AAAAATTTATTAAAAATAAAAAAATA
56719220 TGAAATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (26 bp):
AAAAATTTATTAAAAATAAAAAAATA
Found at i:56724429 original size:20 final size:20
Alignment explanation
Indices: 56724406--56724481 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 20
56724396 TACTTTCCTA
*
56724406 CTCCTGTTAGCACTATGGTG
1 CTCCTGATAGCACTATGGTG
* * * *
56724426 CTCCTGATAGTACTTTCGTA
1 CTCCTGATAGCACTATGGTG
* * **
56724446 CTCTTGTTAGCACTACAGTG
1 CTCCTGATAGCACTATGGTG
56724466 CTCCTGATAGCA-TATG
1 CTCCTGATAGCACTATG
56724482 CATGCTTCTA
Statistics
Matches: 40, Mismatches: 16, Indels: 1
0.70 0.28 0.02
Matches are distributed among these distances:
19 2 0.05
20 38 0.95
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (20 bp):
CTCCTGATAGCACTATGGTG
Found at i:56724438 original size:80 final size:80
Alignment explanation
Indices: 56724302--56724470 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 80
56724292 ATCTTGAATA
* ** * * *
56724302 GGTGCTCCTGACAGTACTTTTGTGCTCCTGATAGCATTACGGTGTTCCTAAAAGTACTTTCATAC
1 GGTGCTCCTAACAGTACTTTCCTACTCCTGATAGCACTACGGTGCTCCTAAAAGTACTTTCATAC
56724367 CCTTGATAGCACCAC
66 CCTTGATAGCACCAC
* * * * *
56724382 GGTGCTCCTAACAGTACTTTCCTACTCCTGTTAGCACTATGGTGCTCCTGATAGTACTTTCGTAC
1 GGTGCTCCTAACAGTACTTTCCTACTCCTGATAGCACTACGGTGCTCCTAAAAGTACTTTCATAC
* * *
56724447 TCTTGTTAGCACTAC
66 CCTTGATAGCACCAC
*
56724462 AGTGCTCCT
1 GGTGCTCCT
56724471 GATAGCATAT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.34
Consensus pattern (80 bp):
GGTGCTCCTAACAGTACTTTCCTACTCCTGATAGCACTACGGTGCTCCTAAAAGTACTTTCATAC
CCTTGATAGCACCAC
Found at i:56724475 original size:40 final size:40
Alignment explanation
Indices: 56724302--56724472 Score: 182
Period size: 40 Copynumber: 4.3 Consensus size: 40
56724292 ATCTTGAATA
* * *
56724302 GGTGCTCCTGACAGTACTTTTGTGCTCCTGATAGCATTAC
1 GGTGCTCCTGACAGTACTTTCGTACTCCTGATAGCACTAC
* * * * *
56724342 GGTGTTCCTAAAAGTACTTTCATAC-CCTTGATAGCACCAC
1 GGTGCTCCTGACAGTACTTTCGTACTCC-TGATAGCACTAC
* * * *
56724382 GGTGCTCCTAACAGTACTTTCCTACTCCTGTTAGCACTAT
1 GGTGCTCCTGACAGTACTTTCGTACTCCTGATAGCACTAC
* * *
56724422 GGTGCTCCTGATAGTACTTTCGTACTCTTGTTAGCACTAC
1 GGTGCTCCTGACAGTACTTTCGTACTCCTGATAGCACTAC
*
56724462 AGTGCTCCTGA
1 GGTGCTCCTGA
56724473 TAGCATATGC
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 105 0.96
41 2 0.02
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (40 bp):
GGTGCTCCTGACAGTACTTTCGTACTCCTGATAGCACTAC
Found at i:56724552 original size:20 final size:20
Alignment explanation
Indices: 56724527--56724605 Score: 79
Period size: 20 Copynumber: 4.0 Consensus size: 20
56724517 ATTATGGTTT
*
56724527 CCTGATTGCACTTTTGTGCC
1 CCTGATTGCACTTTAGTGCC
* *
56724547 CCTGATTGCACTTCAGTGTC
1 CCTGATTGCACTTTAGTGCC
* *
56724567 ACTGATTGCACTTT-GTTCC
1 CCTGATTGCACTTTAGTGCC
* * *
56724586 CTTGATTTCTCTTTAGTGCC
1 CCTGATTGCACTTTAGTGCC
56724606 TCCGTAAGCA
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
19 13 0.28
20 33 0.72
ACGTcount: A:0.13, C:0.28, G:0.18, T:0.42
Consensus pattern (20 bp):
CCTGATTGCACTTTAGTGCC
Found at i:56735977 original size:3 final size:3
Alignment explanation
Indices: 56735969--56736006 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
56735959 ATCACATGTT
56735969 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
56736007 TGGATGTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:56740302 original size:3 final size:3
Alignment explanation
Indices: 56740294--56740337 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
56740284 ATCACATGTT
56740294 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
56740338 TGGATGTAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:56754190 original size:26 final size:26
Alignment explanation
Indices: 56754150--56754219 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
56754140 TTTTTTGAAT
**
56754150 TTTTACTAAGGGTAAAATCATCAAAA
1 TTTTACTGGGGGTAAAATCATCAAAA
* *
56754176 TTTTA-TCGGGTGTAAAATCGTCAAAA
1 TTTTACT-GGGGGTAAAATCATCAAAA
56754202 TTTTACTGGGGGTAAAAT
1 TTTTACTGGGGGTAAAAT
56754220 AGGGATGAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.03
26 35 0.95
27 1 0.03
ACGTcount: A:0.37, C:0.10, G:0.19, T:0.34
Consensus pattern (26 bp):
TTTTACTGGGGGTAAAATCATCAAAA
Found at i:56758162 original size:17 final size:17
Alignment explanation
Indices: 56758140--56758176 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
56758130 GCTAGACTGG
56758140 GGAAAGGAAAAGATTGA
1 GGAAAGGAAAAGATTGA
56758157 GGAAAGGAAAAGATTGA
1 GGAAAGGAAAAGATTGA
56758174 GGA
1 GGA
56758177 CAAAAGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.38, T:0.11
Consensus pattern (17 bp):
GGAAAGGAAAAGATTGA
Found at i:56758476 original size:50 final size:50
Alignment explanation
Indices: 56758401--56758692 Score: 338
Period size: 50 Copynumber: 5.9 Consensus size: 50
56758391 CATTTGGGTA
56758401 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
*
56758451 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
56758501 AAGAGGTCCAATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** * * * *
56758551 GAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCATCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* ** * * * * *
56758601 GAGAACTCCCATGTAAGGCCATATCTGGGATATGGCATTGGCA--GTACAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGAT
** * * *
56758650 GAA-ACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 -AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
56758693 TGTTATATTC
Statistics
Matches: 209, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
48 1 0.00
49 35 0.17
50 173 0.83
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:56758921 original size:16 final size:16
Alignment explanation
Indices: 56758900--56758930 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56758890 GTTATTTAAG
56758900 CAAGTAAGTAAGTAAA
1 CAAGTAAGTAAGTAAA
*
56758916 CAAGTAAGTGAGTAA
1 CAAGTAAGTAAGTAA
56758931 GTAAAGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (16 bp):
CAAGTAAGTAAGTAAA
Found at i:56758944 original size:20 final size:20
Alignment explanation
Indices: 56758901--56758946 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
56758891 TTATTTAAGC
*
56758901 AAGTAAGTAAGTAAACAAGT
1 AAGTAAGTAAGTAAACAAGA
* *
56758921 AAGTGAGTAAGTAAAGAAGA
1 AAGTAAGTAAGTAAACAAGA
56758941 AAGTAA
1 AAGTAA
56758947 AGATCCTAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.02, G:0.24, T:0.17
Consensus pattern (20 bp):
AAGTAAGTAAGTAAACAAGA
Found at i:56765185 original size:50 final size:50
Alignment explanation
Indices: 56765104--56765296 Score: 206
Period size: 50 Copynumber: 3.9 Consensus size: 50
56765094 CATTTGGGTA
* *
56765104 AAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * * *
56765154 AAGAGGTCACATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGAC
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * *
56765204 GAGAGGTCCCCCGTAAGACCATGTCTGGGACATAGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * * * *
56765254 GAGAACTCCCATGTTAGGCCATATTTGGGATATGGCATTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
56765297 GTACAGGAAA
Statistics
Matches: 118, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 118 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:56765281 original size:100 final size:100
Alignment explanation
Indices: 56765105--56765296 Score: 240
Period size: 100 Copynumber: 1.9 Consensus size: 100
56765095 ATTTGGGTAA
* * * * **
56765105 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATAAGAGGTCACATGTAA
1 AGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGAGATAAGAACTCACATGTAA
* *
56765170 GACCATGTTTGGGACATGGCGTTGGCACCGAGACG
66 GACCATATTTGGGACATGGCATTGGCACCGAGACG
* * * * * *
56765205 AGAGGTCCCCCGTAAGACCATGTCTGGGACATAGCATGGGCACCGATATGAGAACTCCCATGTTA
1 AGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGAGATAAGAACTCACATGTAA
* *
56765270 GGCCATATTTGGGATATGGCATTGGCA
66 GACCATATTTGGGACATGGCATTGGCA
56765297 GTACAGGAAA
Statistics
Matches: 76, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (100 bp):
AGAGGTCCCACGTAAGACCATGTCTAGGACATAGCATGGGCACCGAGATAAGAACTCACATGTAA
GACCATATTTGGGACATGGCATTGGCACCGAGACG
Found at i:56765570 original size:16 final size:16
Alignment explanation
Indices: 56765549--56765579 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56765539 GTTATTTAAG
56765549 CAAGTAAGTAAGTAAA
1 CAAGTAAGTAAGTAAA
*
56765565 CAAGTAAGTGAGTAA
1 CAAGTAAGTAAGTAA
56765580 GTAAAGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.23, T:0.19
Consensus pattern (16 bp):
CAAGTAAGTAAGTAAA
Found at i:56765593 original size:20 final size:20
Alignment explanation
Indices: 56765550--56765595 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
56765540 TTATTTAAGC
*
56765550 AAGTAAGTAAGTAAACAAGT
1 AAGTAAGTAAGTAAACAAGA
* *
56765570 AAGTGAGTAAGTAAAGAAGA
1 AAGTAAGTAAGTAAACAAGA
56765590 AAGTAA
1 AAGTAA
56765596 AGATCTTAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.57, C:0.02, G:0.24, T:0.17
Consensus pattern (20 bp):
AAGTAAGTAAGTAAACAAGA
Found at i:56766240 original size:24 final size:24
Alignment explanation
Indices: 56766213--56766264 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
56766203 TTAGTAAGTC
*
56766213 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
56766237 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
56766261 AAAT
1 AAAT
56766265 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:56768210 original size:24 final size:24
Alignment explanation
Indices: 56768183--56768234 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
56768173 TTAGTAAGTC
*
56768183 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
56768207 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
56768231 AAAT
1 AAAT
56768235 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:56771830 original size:24 final size:24
Alignment explanation
Indices: 56771803--56771873 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 24
56771793 ATTTATATTC
* * *
56771803 ATCTCCATCGTTGTCTTCATCTTT
1 ATCTCCACCCTTGGCTTCATCTTT
56771827 ATCTCCACCCTTGGCTTCATCTTT
1 ATCTCCACCCTTGGCTTCATCTTT
* **
56771851 ATCCCCACCCTTAACTTCATCTT
1 ATCTCCACCCTTGGCTTCATCTT
56771874 CGTCTCTATT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.15, C:0.37, G:0.06, T:0.42
Consensus pattern (24 bp):
ATCTCCACCCTTGGCTTCATCTTT
Found at i:56779159 original size:16 final size:17
Alignment explanation
Indices: 56779128--56779160 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
56779118 AATATGTAAT
*
56779128 ATTTTATATGAATTTTA
1 ATTTTATATCAATTTTA
56779145 ATTTTATA-CAATTTTA
1 ATTTTATATCAATTTTA
56779161 TACATGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (17 bp):
ATTTTATATCAATTTTA
Found at i:56779403 original size:29 final size:30
Alignment explanation
Indices: 56779322--56779403 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 30
56779312 GAATCAAAAC
56779322 TAAAATTTCATATAT-AAATTTAAACCACAAT
1 TAAAATTT-ATATATCAAA-TTAAACCACAAT
*
56779353 TAAAATTT-TATATCTATAATTACACCA-AAT
1 TAAAATTTATATATC-A-AATTAAACCACAAT
56779383 TAAAATTTATATATCAAATTA
1 TAAAATTTATATATCAAATTA
56779404 TATAGTACTC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
29 10 0.22
30 12 0.26
31 22 0.48
32 2 0.04
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (30 bp):
TAAAATTTATATATCAAATTAAACCACAAT
Found at i:56789928 original size:22 final size:23
Alignment explanation
Indices: 56789895--56789937 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
56789885 CACAACGCAA
56789895 CAAAAAACAAAGACAA-TAATTT
1 CAAAAAACAAAGACAACTAATTT
*
56789917 CAAAATAA-AAAGGCAACTAAT
1 CAAAA-AACAAAGACAACTAAT
56789938 CCGAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.63, C:0.14, G:0.07, T:0.16
Consensus pattern (23 bp):
CAAAAAACAAAGACAACTAATTT
Found at i:56805495 original size:29 final size:30
Alignment explanation
Indices: 56805442--56805500 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
56805432 GAATTGAATC
56805442 AAATCAAAATTTCATATATAAAATTACACA
1 AAATCAAAATTTCATATATAAAATTACACA
* *
56805472 AAATCAAAATTT-ATGTATATAATTACACA
1 AAATCAAAATTTCATATATAAAATTACACA
56805501 TTAAACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32
Consensus pattern (30 bp):
AAATCAAAATTTCATATATAAAATTACACA
Found at i:56805514 original size:31 final size:29
Alignment explanation
Indices: 56805446--56805522 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 29
56805436 TGAATCAAAT
*
56805446 CAAAATTTCATATATAAAATTACACAAAAT
1 CAAAATTT-ATATATAAAATTACACAAAAC
* *
56805476 CAAAATTTATGTATATAATTACACATTAAAC
1 CAAAATTTATATATAAAATTACACA--AAAC
* *
56805507 CATAATTTATCTATAA
1 CAAAATTTATATATAA
56805523 TTTTGAGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
29 15 0.38
30 8 0.21
31 16 0.41
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.35
Consensus pattern (29 bp):
CAAAATTTATATATAAAATTACACAAAAC
Found at i:56806238 original size:126 final size:126
Alignment explanation
Indices: 56806052--56806405 Score: 636
Period size: 126 Copynumber: 2.8 Consensus size: 126
56806042 TAATTTCGAG
*
56806052 TTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGATAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGATAAGAATTTGTG
* * *
56806117 AAATCGCGCCCTCGTGGACTCGTTTTTGCTACAGTAGGTCACGGAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGAAAGAAATAATTATTTTT
56806178 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGATAAGAATTTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGATAAGAATTTGTG
56806243 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGAAAGAAATAATTATTTTT
66 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGAAAGAAATAATTATTTTT
* * *
56806304 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTTTA
1 TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGATAAGAATTTGTG
*
56806369 AAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAG
56806406 CATGTTTGGT
Statistics
Matches: 220, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 220 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (126 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGATAAGAATTTGTG
AAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCACGAAAGAAATAATTATTTTT
Found at i:56809315 original size:116 final size:116
Alignment explanation
Indices: 56809111--56809350 Score: 426
Period size: 116 Copynumber: 2.1 Consensus size: 116
56809101 TGATAAATTG
*
56809111 TATTAACTCAAAAAATTGTATTACTAGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATAGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
*
56809176 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTATGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
* *
56809227 TATTAACTCTAAAAATTGTATTAATGGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
1 TATTAACTCAAAAAATTGTATTAATAGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
* *
56809292 TAGTAGCAGTCAAAATATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
66 TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
56809343 TATTAACT
1 TATTAACT
56809351 TAGTTTAGGG
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 118 1.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (116 bp):
TATTAACTCAAAAAATTGTATTAATAGTTAGTAAAATTATCAAATTATATAAAATTATTAATTGT
TAGTACCAGTCAAAACATTTTTCCAAATCTAACATTACGTGAATGTAAAAT
Found at i:56809410 original size:21 final size:22
Alignment explanation
Indices: 56809385--56809438 Score: 92
Period size: 21 Copynumber: 2.5 Consensus size: 22
56809375 AGGTTAGGAG
56809385 TAGGGTTTTAAAGTTAA-GGGT
1 TAGGGTTTTAAAGTTAAGGGGT
*
56809406 TAGGGTTTTTAAGTTAAGGGGT
1 TAGGGTTTTAAAGTTAAGGGGT
56809428 TAGGGTTTTAA
1 TAGGGTTTTAA
56809439 TTAAATTAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 16 0.53
22 14 0.47
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.41
Consensus pattern (22 bp):
TAGGGTTTTAAAGTTAAGGGGT
Found at i:56809454 original size:29 final size:28
Alignment explanation
Indices: 56809424--56809620 Score: 168
Period size: 29 Copynumber: 7.2 Consensus size: 28
56809414 TTAAGTTAAG
56809424 GGGTTAGGGTTTTAATTAAATTAGGTTA
1 GGGTTAGGGTTTTAATTAAATTAGGTTA
56809452 GGGTTAGGGTTTCTAATTAAATTAGGTTA
1 GGGTTAGGGTTT-TAATTAAATTAGGTTA
*
56809481 GGGTTAGGGTTTTTAGTTAAATTA---T-
1 GGGTTAGGG-TTTTAATTAAATTAGGTTA
*
56809506 --GTTA-GGATTT--TTAAAGTTAAGGTTTA
1 GGGTTAGGGTTTTAATTAAA-TT-AGG-TTA
* * * *
56809532 GGGTT----TTTAAGTTAAGGTTAAGTTA
1 GGGTTAGGGTTTTAATTAA-ATTAGGTTA
56809557 GGGTTAGGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGG-TTTTAATTAAATTAGGTTA
*
56809586 GGATTAGGGTTTTTAATTAAATTAGGTTA
1 GGGTTAGGG-TTTTAATTAAATTAGGTTA
56809615 GGGTTA
1 GGGTTA
56809621 AAGTTAAGGT
Statistics
Matches: 138, Mismatches: 12, Indels: 37
0.74 0.06 0.20
Matches are distributed among these distances:
19 5 0.04
20 2 0.01
21 4 0.03
22 2 0.01
23 4 0.03
25 11 0.08
26 3 0.02
27 6 0.04
28 15 0.11
29 75 0.54
30 11 0.08
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.44
Consensus pattern (28 bp):
GGGTTAGGGTTTTAATTAAATTAGGTTA
Found at i:56809543 original size:21 final size:22
Alignment explanation
Indices: 56809507--56809550 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
56809497 TTAAATTATG
56809507 TTAGGATTTTTAAAGTTAAGGT
1 TTAGGATTTTTAAAGTTAAGGT
*
56809529 TTAGGGTTTTT-AAGTTAAGGT
1 TTAGGATTTTTAAAGTTAAGGT
56809550 T
1 T
56809551 AAGTTAGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (22 bp):
TTAGGATTTTTAAAGTTAAGGT
Found at i:56809653 original size:37 final size:40
Alignment explanation
Indices: 56809589--56809676 Score: 94
Period size: 42 Copynumber: 2.2 Consensus size: 40
56809579 TAGGTTAGGA
56809589 TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAAAGTTAAGG-T
1 TTAGGGTTTTTAATTAAA-TA-GTTA-GGTTAAAGTTAAGGTT
** *
56809631 TTAGGGTTTTTAATT-AA-A-TTAGGTTAGGGTTAGGGTT
1 TTAGGGTTTTTAATTAAATAGTTAGGTTAAAGTTAAGGTT
56809668 TTAGGGTTT
1 TTAGGGTTT
56809677 AGGGTTAGGG
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
36 11 0.26
37 13 0.31
39 1 0.02
41 2 0.05
42 15 0.36
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.45
Consensus pattern (40 bp):
TTAGGGTTTTTAATTAAATAGTTAGGTTAAAGTTAAGGTT
Found at i:56809673 original size:14 final size:15
Alignment explanation
Indices: 56809654--56809682 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
56809644 TTAAATTAGG
56809654 TTAGGG-TTAGGGTT
1 TTAGGGTTTAGGGTT
56809668 TTAGGGTTTAGGGTT
1 TTAGGGTTTAGGGTT
56809683 AGGGGTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (15 bp):
TTAGGGTTTAGGGTT
Found at i:56809766 original size:139 final size:133
Alignment explanation
Indices: 56809621--56809965 Score: 453
Period size: 134 Copynumber: 2.5 Consensus size: 133
56809611 GTTAGGGTTA
* **
56809621 AAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTAGGGTTTAGGGTTAGG
1 AAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTA---ATTA-AATTA--
** *
56809686 GGTTTTAATTA-AATTAGGTT-ATGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGT
60 GGTTAGAATTAGAATT--GTTAAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGT
56809749 TTAGGAG-TTTT
123 TTA-GAGTTTTT
56809760 AAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTA
1 AAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTTTAATTAAATTAGGTTA
* ** * *
56809825 GAGTTAGGGTTTTTAAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAATGTTTAGAGT
65 GAATTAGAATTGTTAAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGT
56809890 TTTT
130 TTTT
*
56809894 AAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTA
1 AAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGG-TTTTAATTAAATTAGGTTA
*
56809959 GAGTTAG
65 GAATTAG
56809966 GGTTTTTAAT
Statistics
Matches: 190, Mismatches: 12, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
133 5 0.03
134 127 0.67
135 2 0.01
136 3 0.02
137 3 0.02
139 45 0.24
140 5 0.03
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.46
Consensus pattern (133 bp):
AAGTTAAGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTAATTAAATTAGGTTAG
AATTAGAATTGTTAAGGGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTT
TTT
Found at i:56809780 original size:21 final size:21
Alignment explanation
Indices: 56809727--56809786 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
56809717 TTAAATTAGG
56809727 TTAGGGTTTTTAAAGTTAAGGT
1 TTAGGGTTTTT-AAGTTAAGGT
56809749 TTAGGAG-TTTTAAGTTAAGGT
1 TTAGG-GTTTTTAAGTTAAGGT
56809770 TTAGGGTTTTTAA-TTAA
1 TTAGGGTTTTTAAGTTAA
56809787 ATTAGGTTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.14
21 21 0.58
22 9 0.25
23 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGT
Found at i:56809803 original size:29 final size:29
Alignment explanation
Indices: 56809770--56809840 Score: 133
Period size: 29 Copynumber: 2.4 Consensus size: 29
56809760 AAGTTAAGGT
*
56809770 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGAG
56809799 TTAGGGTTTTTAATTAAATTAGGTTAGAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGAG
56809828 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
56809841 GGGTTTTGTA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.46
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGAG
Found at i:56809825 original size:23 final size:23
Alignment explanation
Indices: 56809631--56809800 Score: 101
Period size: 23 Copynumber: 7.3 Consensus size: 23
56809621 AAGTTAAGGT
56809631 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
* **
56809654 TTAGGGTTAGGGTT--TTAGGGTTTAGGG
1 TTAGGGTT---TTTAATTA--AATTA-GG
*
56809681 TTAGGGGTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAGG
*
56809704 TTATGGTTTTGT-ATTAAATTAGG
1 TTAGGGTTTT-TAATTAAATTAGG
*
56809727 TTAGGGTTTTT-A--AAGTTAAGG
1 TTAGGGTTTTTAATTAAATT-AGG
56809748 TTTAGGAG-TTTTAAGTT--A--AGG
1 -TTAGG-GTTTTTAA-TTAAATTAGG
56809769 TTTAGGGTTTTTAATTAAATTAGG
1 -TTAGGGTTTTTAATTAAATTAGG
56809793 TTAGGGTT
1 TTAGGGTT
56809801 AGGGTTTTTA
Statistics
Matches: 114, Mismatches: 12, Indels: 42
0.68 0.07 0.25
Matches are distributed among these distances:
20 7 0.06
21 18 0.16
22 12 0.11
23 48 0.42
24 12 0.11
26 8 0.07
27 9 0.08
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (23 bp):
TTAGGGTTTTTAATTAAATTAGG
Found at i:56809885 original size:134 final size:134
Alignment explanation
Indices: 56809708--56809974 Score: 500
Period size: 134 Copynumber: 2.0 Consensus size: 134
56809698 ATTAGGTTAT
56809708 GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGGAG-TTTTAAGTTAAGGTTT
1 GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTA-GAGTTTTTAAGTTAAGGTTT
*
56809772 AGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGAGTTAGGGTTT
65 AGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTAGAGTTAGGGTTT
56809837 TTAAG
130 TTAAG
*
56809842 GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAATGTTTAGAGTTTTTAAGTTAAGGTTTA
1 GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTTA
56809907 GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTAGAGTTAGGGTTTT
66 GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTAGAGTTAGGGTTTT
56809972 TAA
131 TAA
56809975 TTAAATTAGG
Statistics
Matches: 130, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
133 3 0.02
134 127 0.98
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.46
Consensus pattern (134 bp):
GGTTTTGTATTAAATTAGGTTAGGGTTTTTAAAGTTAAGGTTTAGAGTTTTTAAGTTAAGGTTTA
GGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGATTAGAGTTAGGGTTTT
TAAG
Found at i:56809891 original size:22 final size:22
Alignment explanation
Indices: 56809861--56809916 Score: 87
Period size: 21 Copynumber: 2.6 Consensus size: 22
56809851 TTAAATTAGG
*
56809861 TTAGGGTTTTTAAAGTTAATGT
1 TTAGGGTTTTTAAAGTTAAGGT
*
56809883 TTAGAGTTTTT-AAGTTAAGGT
1 TTAGGGTTTTTAAAGTTAAGGT
56809904 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
56809917 TTAAATTAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (22 bp):
TTAGGGTTTTTAAAGTTAAGGT
Found at i:56809934 original size:23 final size:23
Alignment explanation
Indices: 56809840--56810019 Score: 101
Period size: 29 Copynumber: 7.4 Consensus size: 23
56809830 AGGGTTTTTA
56809840 AGGGTTTTGT-ATTAAATTAGGTT
1 AGGGTTTT-TAATTAAATTAGGTT
*
56809863 AGGGTTTTTAAAGTT-AA-T-GTTT
1 AGGGTTTTT-AA-TTAAATTAGGTT
*
56809885 AGAGTTTTTAAGTT--A--AGGTTT
1 AGGGTTTTTAA-TTAAATTAGG-TT
56809906 AGGGTTTTTAATTAAATTAGGTTAGGGTT
1 AGGGTTTTTAATT-AA--A--TTA-GGTT
56809935 AGGGTTTTTAATTAAATTAGATTAGAGTT
1 AGGGTTTTTAATT-A---A-ATTAG-GTT
56809964 AGGGTTTTTAATTAAATTAGGTT
1 AGGGTTTTTAATTAAATTAGGTT
56809987 AGGG--TTTAAGGTTAAATTAGGTT
1 AGGGTTTTTAA--TTAAATTAGGTT
56810010 AGGGTTTTTA
1 AGGGTTTTTA
56810020 TTACATCAAA
Statistics
Matches: 129, Mismatches: 5, Indels: 44
0.72 0.03 0.25
Matches are distributed among these distances:
20 4 0.03
21 22 0.17
22 12 0.09
23 32 0.25
24 8 0.06
25 8 0.06
28 2 0.02
29 37 0.29
30 2 0.02
31 1 0.01
32 1 0.01
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (23 bp):
AGGGTTTTTAATTAAATTAGGTT
Found at i:56809937 original size:29 final size:29
Alignment explanation
Indices: 56809904--56809992 Score: 160
Period size: 29 Copynumber: 3.1 Consensus size: 29
56809894 AAGTTAAGGT
56809904 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
* *
56809933 TTAGGGTTTTTAATTAAATTAGATTAGAG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
56809962 TTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTAGGGTTTTTAATTAAATTAGGTTAGGG
56809991 TT
1 TT
56809993 TAAGGTTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (29 bp):
TTAGGGTTTTTAATTAAATTAGGTTAGGG
Found at i:56810043 original size:25 final size:25
Alignment explanation
Indices: 56810015--56810152 Score: 146
Period size: 25 Copynumber: 5.7 Consensus size: 25
56810005 AGGTTAGGGT
56810015 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
56810040 TTTTATTACATCAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** * *** *
56810063 --AAATAAC-TCGAAAT-TTTTTTTA
1 TTTTATTACATC-AAATAAACTTCTA
56810085 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
56810110 TTTTATTACATCAAATAAACTTCTA
1 TTTTATTACATCAAATAAACTTCTA
56810135 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
56810153 TATCAAAATA
Statistics
Matches: 92, Mismatches: 13, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
20 2 0.02
21 9 0.10
22 2 0.02
23 2 0.02
24 12 0.13
25 65 0.71
ACGTcount: A:0.41, C:0.14, G:0.01, T:0.44
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:56810195 original size:44 final size:45
Alignment explanation
Indices: 56810025--56810206 Score: 156
Period size: 45 Copynumber: 4.0 Consensus size: 45
56810015 TTTTATTACA
*
56810025 TCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
*** * * ** *
56810070 TCGAAAT-TTTTTTTATTTTATTACATCAAATAA-ACTTCTATTTTATTAC
1 TC-AAATAAACTTCTATTTTATTACATAAAATAATA--TC-A--AAATAAC
*
56810119 ATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAAC
1 -TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
* *
56810165 TCAAA-AAATTTCTATCTTT-TTATATAAAATAATATCAAAATA
1 TCAAATAAACTTCTAT-TTTATTACATAAAATAATATCAAAATA
56810207 TTCAAAATAT
Statistics
Matches: 110, Mismatches: 17, Indels: 21
0.74 0.11 0.14
Matches are distributed among these distances:
44 31 0.28
45 32 0.29
46 10 0.09
47 1 0.01
48 1 0.01
49 10 0.09
50 24 0.22
51 1 0.01
ACGTcount: A:0.45, C:0.13, G:0.01, T:0.41
Consensus pattern (45 bp):
TCAAATAAACTTCTATTTTATTACATAAAATAATATCAAAATAAC
Found at i:56810652 original size:18 final size:18
Alignment explanation
Indices: 56810629--56810663 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
56810619 CAGAAAAGGA
*
56810629 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
56810647 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
56810664 AAACGCACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:56812086 original size:22 final size:22
Alignment explanation
Indices: 56812061--56812109 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
56812051 AAATATGGAT
56812061 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
56812083 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
56812105 TTGAG
1 TTGAG
56812110 TGGAAATTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.29
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:56812116 original size:11 final size:11
Alignment explanation
Indices: 56812077--56812133 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
56812067 GAATTTTGGA
56812077 AGGAAATTGAG
1 AGGAAATTGAG
*
56812088 A-GAATTTTG-G
1 AGGAA-ATTGAG
56812098 AAGGAAATTGAG
1 -AGGAAATTGAG
*
56812110 TGGAAATTGAG
1 AGGAAATTGAG
56812121 AGGAAATATGAG
1 AGGAAAT-TGAG
56812133 A
1 A
56812134 AAGAATTTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
10 4 0.11
11 24 0.65
12 9 0.24
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.23
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:56813948 original size:21 final size:21
Alignment explanation
Indices: 56813918--56813961 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
56813908 TCATTTGGTC
56813918 AAGTACCGATACTTCCTTT-AA
1 AAGTACCGATACTT-CTTTCAA
*
56813939 AAGTATCGATACTTCTTTCAA
1 AAGTACCGATACTTCTTTCAA
56813960 AA
1 AA
56813962 AACCAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.34
Consensus pattern (21 bp):
AAGTACCGATACTTCTTTCAA
Found at i:56816200 original size:43 final size:44
Alignment explanation
Indices: 56816099--56816210 Score: 181
Period size: 44 Copynumber: 2.6 Consensus size: 44
56816089 TATCATTTGT
*
56816099 CACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
* *
56816143 CACTTATCACTTGTCACCGATCAGATAAGTGTAGTTAAA-CTAC
1 CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
*
56816186 CACTTATCACTTGTCATTGATCAGA
1 CACTTATCACTTGTCACTGATCAGA
56816211 AGTACTCAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
43 27 0.43
44 36 0.57
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (44 bp):
CACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:56816304 original size:17 final size:17
Alignment explanation
Indices: 56816282--56816314 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
56816272 TATTCTCAAT
56816282 TCATCA-ACAAATATATC
1 TCATCATAC-AATATATC
56816299 TCATCATACAATATAT
1 TCATCATACAATATAT
56816315 AATTCATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
TCATCATACAATATATC
Found at i:56825935 original size:29 final size:30
Alignment explanation
Indices: 56825892--56825949 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
56825882 CTTTCACTTG
56825892 AAAGAAAAAACTAAAATTAA-ATTTAATAA
1 AAAGAAAAAACTAAAATTAATATTTAATAA
*
56825921 AAAGAAAAGAA-TAAAATTAATTTTTAATA
1 AAAGAAAA-AACTAAAATTAATATTTAATA
56825950 GATAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (30 bp):
AAAGAAAAAACTAAAATTAATATTTAATAA
Found at i:56837663 original size:17 final size:16
Alignment explanation
Indices: 56837637--56837683 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
56837627 AAATTTTAGA
*
56837637 ATAAAAAAATAAAAAT
1 ATAAATAAATAAAAAT
56837653 CATAAATAAATAAGAAAT
1 -ATAAATAAATAA-AAAT
*
56837671 AAAAATAAA-AAAA
1 ATAAATAAATAAAA
56837684 GTGGCAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 2 0.07
16 2 0.07
17 19 0.70
18 4 0.15
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (16 bp):
ATAAATAAATAAAAAT
Found at i:56839069 original size:24 final size:24
Alignment explanation
Indices: 56839026--56839074 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
56839016 GTTTAGTATC
* *
56839026 ACTATCATCATAATTTGCACTATT
1 ACTATCATCATAACTCGCACTATT
*
56839050 ACTATCATCATAGCTCGCACTATT
1 ACTATCATCATAACTCGCACTATT
56839074 A
1 A
56839075 TTATTAACCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (24 bp):
ACTATCATCATAACTCGCACTATT
Found at i:56850570 original size:17 final size:17
Alignment explanation
Indices: 56850533--56850582 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
56850523 CATATATTGC
*
56850533 AAAAAAATAAAAATAAAT
1 AAAAAAATAAAAA-AGAT
*
56850551 AAAAAAATAAAAAAGCT
1 AAAAAAATAAAAAAGAT
* *
56850568 AAATAAATTAAAAAG
1 AAAAAAATAAAAAAG
56850583 TCCGATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (17 bp):
AAAAAAATAAAAAAGAT
Found at i:56862997 original size:13 final size:13
Alignment explanation
Indices: 56862979--56863003 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56862969 TAATTTATAT
56862979 GTGTGAAAATTTC
1 GTGTGAAAATTTC
56862992 GTGTGAAAATTT
1 GTGTGAAAATTT
56863004 TATCGTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:56864261 original size:25 final size:25
Alignment explanation
Indices: 56864227--56864276 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
56864217 ATAAGCCTAG
**
56864227 CAGGCTAAGTGCTGGTGAACTGAAT
1 CAGGCTAAGTGCCAGTGAACTGAAT
56864252 CAGGCTAAGTGCCAGTGAACTGAAT
1 CAGGCTAAGTGCCAGTGAACTGAAT
56864277 TATACTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (25 bp):
CAGGCTAAGTGCCAGTGAACTGAAT
Found at i:56867571 original size:13 final size:13
Alignment explanation
Indices: 56867553--56867578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
56867543 ATGAACCCTA
56867553 GGATTATGCAGGG
1 GGATTATGCAGGG
56867566 GGATTATGCAGGG
1 GGATTATGCAGGG
56867579 TAATAAGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.46, T:0.23
Consensus pattern (13 bp):
GGATTATGCAGGG
Found at i:56885266 original size:6 final size:6
Alignment explanation
Indices: 56885248--56885291 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
56885238 TACAAATGCA
* * *
56885248 TCATTT CTCATTT TCATTT TCATTT CCATTT CCATTT CCATTT T
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
56885292 GAGAAACCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.16, C:0.25, G:0.00, T:0.59
Consensus pattern (6 bp):
TCATTT
Found at i:56885272 original size:12 final size:12
Alignment explanation
Indices: 56885249--56885291 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
56885239 ACAAATGCAT
*
56885249 CATTTCTCATTTT
1 CATTT-TCATTTC
56885262 CATTTTCATTTC
1 CATTTTCATTTC
*
56885274 CATTTCCATTTC
1 CATTTTCATTTC
56885286 CATTTT
1 CATTTT
56885292 GAGAAACCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (12 bp):
CATTTTCATTTC
Found at i:56885283 original size:18 final size:19
Alignment explanation
Indices: 56885248--56885290 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
56885238 TACAAATGCA
*
56885248 TCATTTCTCATTTTCATTT
1 TCATTTCTCATTTCCATTT
56885267 TCATTTC-CATTTCCATTT
1 TCATTTCTCATTTCCATTT
*
56885285 CCATTT
1 TCATTT
56885291 TGAGAAACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (19 bp):
TCATTTCTCATTTCCATTT
Found at i:56887364 original size:98 final size:98
Alignment explanation
Indices: 56887241--56887435 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
56887231 AAAAATCATG
*
56887241 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
56887306 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
56887339 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
56887404 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
56887436 TTTATTGTAT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:56899142 original size:44 final size:44
Alignment explanation
Indices: 56898935--56899143 Score: 144
Period size: 44 Copynumber: 4.8 Consensus size: 44
56898925 CCAAGCCTTG
* * *
56898935 TCTCCCTGAGCAGCAGTGGAGA-AGGTTGAAGATTGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGA-ACAGATTGAAGATTGTAAATCTTA
**
56898979 TCTCCCTAAGCAGTAGTGGAACAGAACGAAGA-TG-ACGAATCTTA
1 TCTCCCTAAGCAGTAGTGGAACAGATTGAAGATTGTA--AATCTTA
* ***** ** *
56899023 TCTTCCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
1 TC-TCCCTAAGCAGTAGT-GGAA-CAGATTGAAGATTGTAAATCTTA
* * *
56899067 TCTCCCTGAGCAGCAGTGGAGA-AGGTTGAAGATTGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGA-ACAGATTGAAGATTGTAAATCTTA
*
56899111 TCTCCCTAAGCAGTAGTGGAACAGATCGAAGAT
1 TCTCCCTAAGCAGTAGTGGAACAGATTGAAGAT
56899144 GACGAATCTT
Statistics
Matches: 122, Mismatches: 30, Indels: 26
0.69 0.17 0.15
Matches are distributed among these distances:
42 5 0.04
43 13 0.11
44 91 0.75
45 8 0.07
46 5 0.04
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAACAGATTGAAGATTGTAAATCTTA
Found at i:56899180 original size:44 final size:46
Alignment explanation
Indices: 56898972--56899180 Score: 153
Period size: 44 Copynumber: 4.8 Consensus size: 46
56898962 GAAGATTGTA
*
56898972 AATCTTATCTCCCTAAGCAGTAGT-GGAA-CAGAACGAAGATGACG
1 AATCTTATCTCCCTAAGCAGTAGTGGGAAGCAGATCGAAGATGACG
** ** *
56899016 AATCTTATCTTCCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACC
1 AATCTTATC-TCCCTAAGCAGTAGTGGGAAGCAGATCGAAGATGACG
* * * * *
56899059 AAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAG--G-TTGAAGATTGTA--
1 AA-TCTTATCTCCCTAAGCAGTAGTGG-GAAGCAGATCGAAGA-TG-ACG
56899104 AATCTTATCTCCCTAAGCAGTAGT-GGAA-CAGATCGAAGATGACG
1 AATCTTATCTCCCTAAGCAGTAGTGGGAAGCAGATCGAAGATGACG
56899148 AATCTTATCTTCCC-AAG-A-TAGTGGGAAGCAGAT
1 AATCTTATC-TCCCTAAGCAGTAGTGGGAAGCAGAT
56899181 TTGAGCCACC
Statistics
Matches: 128, Mismatches: 18, Indels: 38
0.70 0.10 0.21
Matches are distributed among these distances:
42 12 0.09
43 22 0.17
44 72 0.56
45 12 0.09
46 5 0.04
47 5 0.04
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (46 bp):
AATCTTATCTCCCTAAGCAGTAGTGGGAAGCAGATCGAAGATGACG
Found at i:56899285 original size:44 final size:44
Alignment explanation
Indices: 56899237--56899421 Score: 110
Period size: 44 Copynumber: 4.2 Consensus size: 44
56899227 AAGATTATAG
56899237 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGA
* ** ** *
56899281 ATCTTATCTTTCC-AAG--ATAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAATAGT-GG-AGCAGATCGAAGACGGCGA
* * * * * * ** * * * ** *
56899324 ACCCTTGTCTCCCTGAGTAACAGCGGAAAAGGTTGAATATTG-TA
1 A-TCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGA
56899368 GATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGA
56899413 ATCTTATCT
1 ATCTTATCT
56899422 TTCCAAGATA
Statistics
Matches: 96, Mismatches: 35, Indels: 20
0.64 0.23 0.13
Matches are distributed among these distances:
42 5 0.05
43 9 0.09
44 72 0.75
45 7 0.07
46 3 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGA
Found at i:56899685 original size:44 final size:44
Alignment explanation
Indices: 56899369--56899817 Score: 154
Period size: 44 Copynumber: 10.2 Consensus size: 44
56899359 AATATTGTAG
* *
56899369 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
* ** * *
56899413 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACAGCGA
* * * * * * * * * **
56899456 AGCCTTGTCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTATAG-
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CAGCGA
* **
56899501 ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
* ** * *
56899545 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACAGCGA
* * * * * * * * * **
56899588 AGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CAGCGA
* *
56899634 TTC-TATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
* ** * *
56899677 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACAGCGA
* * * * * * * **
56899720 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAG-
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-CAGCGA
* **
56899765 ATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGATGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
56899809 ATCTTATCT
1 ATCTTATCT
56899818 TTCCAAGATA
Statistics
Matches: 282, Mismatches: 93, Indels: 60
0.65 0.21 0.14
Matches are distributed among these distances:
42 12 0.04
43 33 0.12
44 203 0.72
45 24 0.09
46 10 0.04
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
Found at i:56899952 original size:132 final size:132
Alignment explanation
Indices: 56898861--56899938 Score: 1665
Period size: 132 Copynumber: 8.2 Consensus size: 132
56898851 CTGCATTGAC
***
56898861 AGTGGAGCAGATCGAAGACAAC-AAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGAA-TCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
56898925 CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGC
65 CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGC
56898990 AGT
130 AGT
* * * *
56898993 AGTGGAACAGAACGAAGATGACGAATCTTATCTTCCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
56899058 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
56899123 GT
131 GT
* * * *
56899125 AGTGGAACAGATCGAAGATGACGAATCTTATCTTCCCAAGATAGTGGGAAGCAGATTTGAGCCAC
1 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * **
56899190 CAAACCTTGTCTCCTTGAGTAACAGCAGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
56899255 AT
131 GT
*
56899257 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * * * *
56899322 CAACCCTTGTCTCCCTGAGTAACAGCGGAAAAGGTTGAATATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
56899387 AT
131 GT
*
56899389 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
56899454 CAAGCCTTGTCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
56899519 GT
131 GT
*
56899521 AGTAGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
56899586 CAAGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGAT-TCTATCTCCCTAAGC
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCT-TATCTCCCTAAGC
56899650 AGT
130 AGT
* **
56899653 AGTGGAGCAAATCGAAGACAGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
56899718 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCTTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
56899783 GT
131 GT
*
56899785 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCCAC
1 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * ** * *
56899850 CAAACCTTGTCTCCCTGAGTAGCAGCGGAGAAAATTGAATATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
56899915 GT
131 GT
56899917 AGTGGAGCAGATCGAAGATGGC
1 AGTGGAGCAGATCGAAGATGGC
56899939 AGATTTTACC
Statistics
Matches: 881, Mismatches: 62, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 877 1.00
133 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
GT
Found at i:56900010 original size:264 final size:263
Alignment explanation
Indices: 56898861--56900082 Score: 1582
Period size: 264 Copynumber: 4.6 Consensus size: 263
56898851 CTGCATTGAC
** *
56898861 AGTGGAGCAGATCGAAGACAAC-AAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCGAAGACGGCGAA-TCTTATCTTTCCAAGATAGTGGGAAGCAGATTGAAGCCA
* * * * *
56898925 CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAAGC
65 CCAAGCC-TATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGC
* * * *
56898990 AGTAGTGGAACAGAACGAAGATGACGAATCTTATCTTCCCAAGATAGTGGGAAGCAGATTTAAGC
129 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
* * *
56899055 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAAATCTTATCTCCCTAA
194 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCTTATCTCCCTAA
56899120 GCAGT
259 GCAGT
* * * *
56899125 AGTGGAACAGATCGAAGATGACGAATCTTATCTTCCCAAGATAGTGGGAAGCAGATTTG-AGCCA
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGA-TTGAAGCCA
* * * * ** *
56899189 CCAAACCTTGTCTCCTTGAGTAACAGCAGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGC
65 CCAAGCC-TATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGC
* *
56899254 AATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
129 AGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
* * * *
56899319 CACCAACCCTTGTCTCCCTGAGTAACAGCGGA-AAAGGTTGAATATTGTAGATCTTATCTCCCTA
194 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAA-GTTGAAGATTGTAGATCTTATCTCCCTA
*
56899383 AGCAAT
258 AGCAGT
*
56899389 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTGAAGCCAC
* * *
56899454 CAAGCCTTGTCTCACTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCC-TATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
56899519 GTAGTAGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
130 GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
* * * * *
56899584 ACCAAGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGAT-TCTATCTCCCTAA
195 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCT-TATCTCCCTAA
56899648 GCAGT
259 GCAGT
* * *
56899653 AGTGGAGCAAATCGAAGACAGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTGAAGCCAC
* *
56899718 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCTTAAGCA
66 CAAGCC-TATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
56899783 GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTGAGCC
130 GTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
* * * *
56899848 ACCAAACCTTGTCTCCCTGAGTAGCAGCGGAGAAAATTGAATATTGTAGATCTTATCTCCCTAAG
195 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCTTATCTCCCTAAG
56899913 CAGT
260 CAGT
* * * *** * * * *
56899917 AGTGGAGCAGATCGAAGATGGC-AGATTTTACCTTTCTGTGGTTATAAT-GG-AGTACATTGAAT
1 AGTGGAGCAGATCGAAGACGGCGA-ATCTTATCTTTC-CAAG--ATAGTGGGAAGCAGATTGAAG
** ** * * * *
56899979 CCAATAATTCTA-CTTCCCTG-GACAACAGTGGAATAGATTAAAGATTACAGATCTTATCTCCCT
62 CCACCAAGCCTATC-TCCCTGAG-CAACAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCT
* *
56900042 AGGCAGTAGTGGAGCAGATCGAAGATGAC-AAGTCTTATCTT
125 AAGCAGTAGTGGAGCAGATCGAAGATGGCGAA-TCTTATCTT
56900083 CCTGAAGTTG
Statistics
Matches: 850, Mismatches: 94, Indels: 28
0.87 0.10 0.03
Matches are distributed among these distances:
263 10 0.01
264 813 0.96
265 21 0.02
266 2 0.00
267 4 0.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (263 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTGAAGCCAC
CAAGCCTATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAAGTTGAAGATTGTAGATCTTATCTCCCTAAGC
AGT
Done.