Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 20 of 313
Found at i:6651829 original size:49 final size:48
Alignment explanation
Indices: 6651721--6651895 Score: 191
Period size: 49 Copynumber: 3.7 Consensus size: 48
6651711 AGACGTAAGC
* * *
6651721 CAGTGTAAGA-CATATCTGGGACAT-GCATCGG-CT-GCAATATG-T-G
1 CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCG-AAGATGATAG
* *
6651764 TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAAGATGATAG
1 -CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGAAGATGATAG
* **
6651813 CTAGTATAAGACCATGTCTGGGACATGGGATTAGCCTCGAAGATGATAG
1 C-AGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGAAGATGATAG
* *
6651862 CAGTGTAAGACCATGTCTGAGACATGGCATCGGC
1 CAGTATAAGACCATGTCTGGGACATGGCATCGGC
6651896 ACCTTACCCA
Statistics
Matches: 112, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
44 10 0.09
45 13 0.12
46 7 0.06
47 7 0.06
48 31 0.28
49 44 0.39
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
CAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGAAGATGATAG
Found at i:6658478 original size:46 final size:48
Alignment explanation
Indices: 6658336--6658698 Score: 339
Period size: 49 Copynumber: 7.6 Consensus size: 48
6658326 TGTGAGCTAA
* * * *
6658336 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCACAATATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCCAG
* * * * * *
6658382 TGTAAGACCATGTCTGGGACGTGGCATCGGCATCAAGAGGAGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCCAG
*
6658430 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-AGAGCCAG
* * *** * *
6658476 TGTAAGA-CATGTCCGGGACAT-GCATCAGTAGCGAGAT--GTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCCAG
* * * * ** *
6658520 TGTAAGACCATGTCTGGGATATGGGATCGGCATGGTTATGTAAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG--AGAGCCAG
* *
6658570 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAGATGATAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCG-AGATGAGAGCCAG
* * *
6658619 TGTAAGACCATGTCCGGGACATGGCATCAGCCTCGAAGATGATAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCCTCG-AGATGAGAGCCAG
*
6658668 TATAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
6658699 ACCTTACCCA
Statistics
Matches: 259, Mismatches: 47, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
44 11 0.04
45 12 0.05
46 65 0.25
47 27 0.10
48 25 0.10
49 81 0.31
50 35 0.14
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCCAG
Found at i:6665587 original size:49 final size:49
Alignment explanation
Indices: 6665415--6665592 Score: 176
Period size: 49 Copynumber: 3.6 Consensus size: 49
6665405 CGAGATGTGT
* * * * *** * *
6665415 CAGTGTAAGACCATATCTGGGACATGGCATCAGCACTTTTATGTGAGAGC
1 CAGTGTAAGACCATGTCCGAGACATGGCATCGGC-CTCAAATATGATAGC
* * * * *
6665465 TAGTGTAAAACCATGTCCGAGACATAGCATTGGCCTCAAAGATGATAGC
1 CAGTGTAAGACCATGTCCGAGACATGGCATCGGCCTCAAATATGATAGC
*
6665514 CAGTGTAAGACCATGTCCGAGACATGGCATCGGCCTCGAATATGATAGC
1 CAGTGTAAGACCATGTCCGAGACATGGCATCGGCCTCAAATATGATAGC
* * * *
6665563 CAATATAAGACCATGTCTGGGACATGGCAT
1 CAGTGTAAGACCATGTCCGAGACATGGCAT
6665593 GTTTGAGTCT
Statistics
Matches: 104, Mismatches: 24, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
49 78 0.75
50 26 0.25
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCCGAGACATGGCATCGGCCTCAAATATGATAGC
Found at i:6667978 original size:55 final size:54
Alignment explanation
Indices: 6667900--6668011 Score: 179
Period size: 55 Copynumber: 2.1 Consensus size: 54
6667890 TCGAGAAAGA
* *
6667900 AAAATTTTAGAGTACAAGGCCGGGTAGTATGGCTACAAAAGGGAGACATTCGAG
1 AAAATTTTAAAGTACAAGGCCGGGTAGTACGGCTACAAAAGGGAGACATTCGAG
* *
6667954 AAAATTTTCAAAGTACAAGGCCGGGTAGTACGGTTACAAAAGGGAGACCTTCGAG
1 AAAATTTT-AAAGTACAAGGCCGGGTAGTACGGCTACAAAAGGGAGACATTCGAG
6668009 AAA
1 AAA
6668012 TGGCAGTAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
54 8 0.15
55 45 0.85
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.20
Consensus pattern (54 bp):
AAAATTTTAAAGTACAAGGCCGGGTAGTACGGCTACAAAAGGGAGACATTCGAG
Found at i:6678746 original size:79 final size:81
Alignment explanation
Indices: 6678610--6678792 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
6678600 TTGAATGATG
* *
6678610 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
6678674 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
6678689 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
6678751 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
6678769 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
6678793 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:6678808 original size:40 final size:40
Alignment explanation
Indices: 6678611--6678794 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
6678601 TGAATGATGT
* * * *
6678611 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
6678651 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
6678691 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
6678729 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
6678770 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
6678795 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:6678816 original size:79 final size:79
Alignment explanation
Indices: 6678663--6678827 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
6678653 GGACTAAGAT
* **
6678663 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
6678728 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
6678742 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
6678805 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
6678821 CCGAAGG
1 CCGAAGG
6678828 TATGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:6682215 original size:24 final size:25
Alignment explanation
Indices: 6682110--6682217 Score: 89
Period size: 25 Copynumber: 4.2 Consensus size: 25
6682100 TTCATCTCTT
6682110 ATGAGCTTACCGA-TACT-CAGCTC-G
1 ATGAGCTTACC-ATTA-TACAGCTCAG
*
6682134 TATGAGCTTACCATTATTCAGCTCGAAG
1 -ATGAGCTTACCATTATACAGCTC--AG
* *
6682162 AAGGAGCTTACCATTATTCAGCTCAG
1 -ATGAGCTTACCATTATACAGCTCAG
* *
6682188 ATGAGCTTACCGTT-TACAGCTCAT
1 ATGAGCTTACCATTATACAGCTCAG
6682212 ATGAGC
1 ATGAGC
6682218 ATACATGTAC
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
24 16 0.22
25 31 0.43
26 2 0.03
28 23 0.32
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (25 bp):
ATGAGCTTACCATTATACAGCTCAG
Found at i:6685369 original size:16 final size:17
Alignment explanation
Indices: 6685348--6685380 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6685338 TTACTTTAGC
6685348 CATTTT-ATTTTTATTG
1 CATTTTAATTTTTATTG
6685364 CATTTTAAATTTTTATT
1 CATTTT-AATTTTTATT
6685381 TTCTTTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.67
Consensus pattern (17 bp):
CATTTTAATTTTTATTG
Found at i:6691467 original size:27 final size:27
Alignment explanation
Indices: 6691437--6691614 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
6691427 ATATTGAGTC
* * * *
6691437 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
6691464 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
6691491 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
6691519 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
6691546 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
6691573 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
6691600 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
6691615 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:6691576 original size:82 final size:81
Alignment explanation
Indices: 6691458--6691613 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
6691448 TGCTATATAA
* *
6691458 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
6691523 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
6691540 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
6691604 CACTTAGTGC
65 CACTTAGTGC
6691614 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:6699617 original size:27 final size:27
Alignment explanation
Indices: 6699587--6699764 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
6699577 ATATTGAGTC
* * * *
6699587 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
6699614 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
6699641 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
6699669 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
6699696 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
6699723 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
6699750 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
6699765 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:6699726 original size:82 final size:81
Alignment explanation
Indices: 6699608--6699763 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
6699598 TGCTATATAA
* *
6699608 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
6699673 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
6699690 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
6699754 CACTTAGTGC
65 CACTTAGTGC
6699764 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:6713507 original size:28 final size:28
Alignment explanation
Indices: 6713467--6713522 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
6713457 GAATCCCCTG
*
6713467 TCTTGATACAGCCAGAGTCTGGGAAAGA
1 TCTTGATACAGCCAGAGTCTGAGAAAGA
*
6713495 TCTTGATATAGCCAGAGTCTGAGAAAGA
1 TCTTGATACAGCCAGAGTCTGAGAAAGA
6713523 GGTCACTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (28 bp):
TCTTGATACAGCCAGAGTCTGAGAAAGA
Found at i:6727145 original size:27 final size:27
Alignment explanation
Indices: 6727107--6727264 Score: 156
Period size: 27 Copynumber: 5.9 Consensus size: 27
6727097 ATCATTAAGA
*
6727107 ATTTGTAAAATTACCAAAATACTCCTG
1 ATTTGTAAAATTACCAAAATACCCCTG
*
6727134 ATTTGTGAAATTACCAAAATACCTCC-G
1 ATTTGTAAAATTACCAAAATACC-CCTG
* * *
6727161 AATCGTAAAATTACCGAAATACCCCTG
1 ATTTGTAAAATTACCAAAATACCCCTG
* * ** *
6727188 ACTTGTGAAATTACTGAAATACCCCTA
1 ATTTGTAAAATTACCAAAATACCCCTG
* * *
6727215 ATTTTTAAAATTATCGAAATACCCCTG
1 ATTTGTAAAATTACCAAAATACCCCTG
* * *
6727242 GTTTGTAAAATGACCATAATACC
1 ATTTGTAAAATTACCAAAATACC
6727265 TCTTTAGGGT
Statistics
Matches: 106, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 2 0.02
27 102 0.96
28 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
ATTTGTAAAATTACCAAAATACCCCTG
Found at i:6727194 original size:54 final size:55
Alignment explanation
Indices: 6727105--6727266 Score: 184
Period size: 54 Copynumber: 3.0 Consensus size: 55
6727095 GCATCATTAA
* * *
6727105 GAATTTGTAAAATTACCAAAATACTCCTGATTTGTGAAATTACCAAAATACCTCC
1 GAATTCGTAAAATTACCGAAATACCCCTGATTTGTGAAATTACCAAAATACCTCC
* **
6727160 GAA-TCGTAAAATTACCGAAATACCCCTGACTTGTGAAATTACTGAAATACC-CC
1 GAATTCGTAAAATTACCGAAATACCCCTGATTTGTGAAATTACCAAAATACCTCC
* ** * * * * *
6727213 TAATTTTTAAAATTATCGAAATACCCCTGGTTTGTAAAATGACCATAATACCTC
1 GAATTCGTAAAATTACCGAAATACCCCTGATTTGTGAAATTACCAAAATACCTC
6727267 TTTAGGGTAA
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
53 4 0.05
54 80 0.91
55 4 0.05
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.30
Consensus pattern (55 bp):
GAATTCGTAAAATTACCGAAATACCCCTGATTTGTGAAATTACCAAAATACCTCC
Found at i:6727276 original size:27 final size:27
Alignment explanation
Indices: 6727246--6727309 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
6727236 CCCCTGGTTT
* *
6727246 GTAAAATGACCATAATACCTCTTTAGG
1 GTAAAATGACCATAATACCCCTGTAGG
* *
6727273 GTAAAATGACCGTAATACCCCTGTATG
1 GTAAAATGACCATAATACCCCTGTAGG
6727300 GTAAAATGAC
1 GTAAAATGAC
6727310 AATTATGCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (27 bp):
GTAAAATGACCATAATACCCCTGTAGG
Found at i:6727479 original size:26 final size:27
Alignment explanation
Indices: 6727445--6727507 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 27
6727435 ATGGAGGAAG
***
6727445 TACTG-TACTGGTGACTATGTCAC-AT
1 TACTGATACTGGTGACTACACCACAAT
*
6727470 TACTGATACTGGTGGCTACACCACAAT
1 TACTGATACTGGTGACTACACCACAAT
6727497 TACTGATACTG
1 TACTGATACTG
6727508 ATGGCTTGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 5 0.16
26 14 0.44
27 13 0.41
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (27 bp):
TACTGATACTGGTGACTACACCACAAT
Found at i:6727778 original size:33 final size:33
Alignment explanation
Indices: 6727720--6727809 Score: 92
Period size: 33 Copynumber: 2.7 Consensus size: 33
6727710 CACACTATTG
* * * *
6727720 CTGTATAGGGCTAA-AGGCCATACTGTTCTGTTA
1 CTGTATAGGGCTAAGA-CCCAGACTGTACTGATA
6727753 CTGTATAGGGCTAAGACCCAGACTGTACTGATA
1 CTGTATAGGGCTAAGACCCAGACTGTACTGATA
* * * *
6727786 CTGGATAGGACTTAGGCCCAGACT
1 CTGTATAGGGCTAAGACCCAGACT
6727810 ATTACTGCAG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
33 47 0.98
34 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (33 bp):
CTGTATAGGGCTAAGACCCAGACTGTACTGATA
Found at i:6734696 original size:19 final size:19
Alignment explanation
Indices: 6734672--6734716 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
6734662 CGACGCCTTT
6734672 TGCATT-CATTCCATGCATC
1 TGCATTACATTCCAT-CATC
* *
6734691 TGCATTACATTGCATCATG
1 TGCATTACATTCCATCATC
6734710 TGCATTA
1 TGCATTA
6734717 GAGTCCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.38
Consensus pattern (19 bp):
TGCATTACATTCCATCATC
Found at i:6753585 original size:44 final size:44
Alignment explanation
Indices: 6753537--6753811 Score: 191
Period size: 44 Copynumber: 6.2 Consensus size: 44
6753527 AGCCACCGAC
* * * *
6753537 CTTATCTCTCTGAAGTAGAAAGGGAGCAGGCTAAAGATTGTAGT
1 CTTATCTCTCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
*
6753581 CTTATCT-TCTTGAGGTAGCAAGGGAGCAGAATGAAGATTGTAGAT
1 CTTATCTCTC-TGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
* * ** * * ** * *
6753626 CTTGTCTCCCTGAAATAG-TAGTGGAGCAGA-TCAAAGACCGCAAAT
1 CTTATCTCTCTGAGGTAGCAAG-GGAGCAGACT-GAAGATTG-TAGT
* * ** **** *
6753671 CTTATCT-TCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGC
1 CTTATCTCT-CTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* *
6753715 CTTATCTCTCTGAGGTAGCAAGGGAGCAGGCTGAATATTGTAGT
1 CTTATCTCTCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* *
6753759 CTTATCT-TCCTGAGGTAGTAAAGGAGCAGACTGAAGATTGTAGAT
1 CTTATCTCT-CTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
6753804 CTTATCTC
1 CTTATCTC
6753812 CCTAAGCAGT
Statistics
Matches: 174, Mismatches: 44, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
43 3 0.02
44 107 0.61
45 59 0.34
46 5 0.03
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
Found at i:6753697 original size:45 final size:45
Alignment explanation
Indices: 6753470--6753701 Score: 109
Period size: 44 Copynumber: 5.2 Consensus size: 45
6753460 AAATAGCAGT
* * *
6753470 GGAGCAGATCGAAGACGGCAAATCTTATCTTCCCGAGGTAGCAGG
1 GGAGCAGATCAAAGACCGCAAATCTTATCTTCCCGAGGTAGCAAG
*** * ** * * * *
6753515 GGAGCAGATTTTAG-CCACCGACCTTATC-TCTCTGAAGTAGAAAG
1 GGAGCAGATCAAAGACCGCAAATCTTATCTTC-CCGAGGTAGCAAG
* ** * * **
6753559 GGAGCAG-GCTAAAGATTG-TAGTCTTATCTTCTTGAGGTAGCAAG
1 GGAGCAGATC-AAAGACCGCAAATCTTATCTTCCCGAGGTAGCAAG
* ** * * * ** *
6753603 GGAGCAGAAT-GAAGATTGTAGATCTTGTC-TCCCTGAAATAG-TAG
1 GGAGCAG-ATCAAAGACCGCAAATCTTATCTTCCC-GAGGTAGCAAG
6753647 TGGAGCAGATCAAAGACCGCAAATCTTATCTTCCCGAGGTAGCAAG
1 -GGAGCAGATCAAAGACCGCAAATCTTATCTTCCCGAGGTAGCAAG
6753693 GGAGCAGAT
1 GGAGCAGAT
6753702 TTTAGCCACT
Statistics
Matches: 129, Mismatches: 46, Indels: 24
0.65 0.23 0.12
Matches are distributed among these distances:
43 2 0.02
44 63 0.49
45 58 0.45
46 6 0.05
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
GGAGCAGATCAAAGACCGCAAATCTTATCTTCCCGAGGTAGCAAG
Found at i:6753757 original size:178 final size:177
Alignment explanation
Indices: 6753443--6753905 Score: 676
Period size: 178 Copynumber: 2.6 Consensus size: 177
6753433 TCGGTGAATT
* *
6753443 TAGATTTTGTCTCCCTGAAATAGCAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCGAGG
1 TAGATCTTGTCTCCCTGAAATAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCGAGG
*
6753508 TAGCAGGGGAGCAGATTTTAGCCACCGACCTTATCTCTCTGAAGTAGAAAGGGAGCAGGCTAAAG
66 TAGCAGGGGAGCAGATTTTAGCCACAG-CCTTATCTCTCTGAAGTAGAAAGGGAGCAGGCTAAAG
* *
6753573 ATTGTAGTCTTATCTTCTTGAGGTAGCAAGGGAGCAGAATGAAGATTG
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAAGGAGCAGAATGAAGATTG
* *
6753621 TAGATCTTGTCTCCCTGAAATAGTAGTGGAGCAGATCAAAGACCGCAAATCTTATCTTCCCGAGG
1 TAGATCTTGTCTCCCTGAAATAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCGAGG
* * * * *
6753686 TAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGGGAGCAGGCTGAAT
66 TAGCAGGGGAGCAGATTTTAGCCAC-AGCCTTATCTCTCTGAAGTAGAAAGGGAGCAGGCTAAAG
* *
6753751 ATTGTAGTCTTATCTTCCTGAGGTAGTAAAGGAGCAGACTGAAGATTG
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAAGGAGCAGAATGAAGATTG
* ** * * *
6753799 TAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTTCCCAAGC
1 TAGATCTTGTCTCCCTGAAATAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCGAGG
* * * *
6753863 TAGCAGGGGAGTAGAGTTTAGCCTCCAGCCTTATCTCCCTGAA
66 TAGCAGGGGAGCAGATTTTAGCC-ACAGCCTTATCTCTCTGAA
6753906 ATTGCAGTGG
Statistics
Matches: 255, Mismatches: 28, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
177 76 0.30
178 178 0.70
179 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (177 bp):
TAGATCTTGTCTCCCTGAAATAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTCCCGAGG
TAGCAGGGGAGCAGATTTTAGCCACAGCCTTATCTCTCTGAAGTAGAAAGGGAGCAGGCTAAAGA
TTGTAGTCTTATCTTCCTGAGGTAGCAAAGGAGCAGAATGAAGATTG
Found at i:6753829 original size:44 final size:44
Alignment explanation
Indices: 6753737--6753862 Score: 114
Period size: 44 Copynumber: 2.9 Consensus size: 44
6753727 AGGTAGCAAG
* * * * *
6753737 GGAGCAGGCTGAATATTGTAG-TCTTATCTTCCTGAGGTAGTAAA
1 GGAGCAGACTGAAGATTGTAGATCTTATCTCCCT-AAGCAGTAAA
**
6753781 GGAGCAGACTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT
1 GGAGCAGACTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAAA
* * *
6753825 GGAGCAGA-TCGAAGATGGCAAATCTTATCTTCCC-AAGC
1 GGAGCAGACT-GAAGATTGTAGATCTTATC-TCCCTAAGC
6753863 TAGCAGGGGA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
43 1 0.01
44 53 0.77
45 15 0.22
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (44 bp):
GGAGCAGACTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAAA
Found at i:6776141 original size:48 final size:48
Alignment explanation
Indices: 6776081--6776306 Score: 175
Period size: 48 Copynumber: 4.7 Consensus size: 48
6776071 ATGTGAGTAT
* *
6776081 TGAGATCCCGTGTAAGACCATATTTGGGATATGGTATTGGCATCAAGA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATTGGCATCAAGA
* * * ** *** * *
6776129 TGAGATCTCGTGTAAGACCGTATCTAGGATATAACACCAGCATCGATA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATTGGCATCAAGA
* ** * *
6776177 TGAGATCCCGTATAAGACCATGCCTGGGACATGGCATTGGCATCATTG-
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATTGGCATCA-AGA
* * * * * * *
6776225 TGAGATCCCATGTAAGATCATATCTGGGATATGGTATTGGTACCGATA
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATTGGCATCAAGA
* * * * *
6776273 TCAGGTCCCGTCTAAGACCATGTCTGGGACATGG
1 TGAGATCCCGTGTAAGACCATATCTGGGATATGG
6776307 TATCGGCACC
Statistics
Matches: 130, Mismatches: 46, Indels: 4
0.72 0.26 0.02
Matches are distributed among these distances:
48 130 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (48 bp):
TGAGATCCCGTGTAAGACCATATCTGGGATATGGCATTGGCATCAAGA
Found at i:6776229 original size:96 final size:96
Alignment explanation
Indices: 6776081--6776256 Score: 228
Period size: 96 Copynumber: 1.8 Consensus size: 96
6776071 ATGTGAGTAT
* ** * * * *
6776081 TGAGATCCCGTGTAAGACCATATTTGGGATATGGTATTGGCATCAAGATGAGATCTCGTGTAAGA
1 TGAGATCCCGTATAAGACCATACCTGGGACATGGCATTGGCATCAAGATGAGATCCCATGTAAGA
*
6776146 CCGTATCTAGGATATAACACCAGCATCGATA
66 CCATATCTAGGATATAACACCAGCATCGATA
* *
6776177 TGAGATCCCGTATAAGACCATGCCTGGGACATGGCATTGGCATCATTG-TGAGATCCCATGTAAG
1 TGAGATCCCGTATAAGACCATACCTGGGACATGGCATTGGCATCA-AGATGAGATCCCATGTAAG
* *
6776241 ATCATATCTGGGATAT
65 ACCATATCTAGGATAT
6776257 GGTATTGGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
96 66 0.99
97 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (96 bp):
TGAGATCCCGTATAAGACCATACCTGGGACATGGCATTGGCATCAAGATGAGATCCCATGTAAGA
CCATATCTAGGATATAACACCAGCATCGATA
Found at i:6780856 original size:47 final size:47
Alignment explanation
Indices: 6780798--6780928 Score: 138
Period size: 47 Copynumber: 2.8 Consensus size: 47
6780788 GTACGAATAA
* * **
6780798 TACCTTAATTTGGCTACGAGCCATGATATAGGTATTTTGAGA-AGAGG
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTATTTCAAGATA-AGG
* ** * * * *
6780845 TACCTTGATTTGGTTGTGGGCCATGGTATAGGTACTCCAAGATAAGT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTATTTCAAGATAAGG
*
6780892 TACCTTGATTTGGCTACAAGCCATGGTATAGGTATTT
1 TACCTTGATTTGGCTACGAGCCATGGTATAGGTATTT
6780929 ATCTATTATG
Statistics
Matches: 65, Mismatches: 18, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
47 64 0.98
48 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGAGCCATGGTATAGGTATTTCAAGATAAGG
Found at i:6783792 original size:15 final size:14
Alignment explanation
Indices: 6783774--6783803 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
6783764 TTAATAGCAT
6783774 TTATGTTAACTTACA
1 TTATGTTAA-TTACA
6783789 TTATGTTAATTACA
1 TTATGTTAATTACA
6783803 T
1 T
6783804 ATTAAAGGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (14 bp):
TTATGTTAATTACA
Found at i:6786044 original size:21 final size:21
Alignment explanation
Indices: 6786018--6786059 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6786008 TAGTACAGAC
6786018 GATTTTGAATGAAGCACACAA
1 GATTTTGAATGAAGCACACAA
6786039 GATTTTGAATGAAGCACACAA
1 GATTTTGAATGAAGCACACAA
6786060 TGGTAACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (21 bp):
GATTTTGAATGAAGCACACAA
Found at i:6797365 original size:13 final size:13
Alignment explanation
Indices: 6797341--6797365 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6797331 TACAAAAAGG
6797341 TTTTACTAAAATA
1 TTTTACTAAAATA
6797354 TTTTACTAAAAT
1 TTTTACTAAAAT
6797366 TGTGGTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTTACTAAAATA
Found at i:6808496 original size:40 final size:41
Alignment explanation
Indices: 6808441--6808553 Score: 185
Period size: 40 Copynumber: 2.8 Consensus size: 41
6808431 TCGGATGATA
*
6808441 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
*
6808481 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
*
6808522 T-CGGGCTAAGTCCCGAAGGCATTTGAGCGAGC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGC
6808554 GGCTATATCC
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 65 0.96
41 3 0.04
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:6815987 original size:32 final size:32
Alignment explanation
Indices: 6815943--6816036 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 32
6815933 TCAAGCCCAT
*
6815943 TGGGCCTAAGCCC-ATTCAGATAACAGTGATAC
1 TGGGCC-AAGCCCTATTCAGATAACAGTGAAAC
* * *
6815975 TGGGCCAGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCA-AGCCCTATTCAGATAACAGTGAAAC
*
6816007 TGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TGGGCC-AAG-CCC-TATTCAGATAACAGT
6816037 ATGGCCCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.02
32 23 0.47
33 13 0.27
34 11 0.22
35 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (32 bp):
TGGGCCAAGCCCTATTCAGATAACAGTGAAAC
Found at i:6819192 original size:6 final size:6
Alignment explanation
Indices: 6819181--6819206 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6819171 AGCATCTATA
6819181 AAAAGG AAAAGG AAAAGG AAAAGG AA
1 AAAAGG AAAAGG AAAAGG AAAAGG AA
6819207 TGGTTCCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:6823429 original size:42 final size:42
Alignment explanation
Indices: 6823312--6823429 Score: 105
Period size: 45 Copynumber: 2.7 Consensus size: 42
6823302 AGCTAAAATA
* * * * *
6823312 TCGTGTAAGACCGTGTCTGGGACACAGGCTTTGATTTGAGATT
1 TCGTGTAAGACCATGTCTGGGACAAAGGCATCGATCT-AGATT
* **
6823355 TACGTTGTAAGACCATGTCTTGGACATCGGCATCGTATCT-GATT
1 T-CG-TGTAAGACCATGTCTGGGACAAAGGCATCG-ATCTAGATT
6823399 TCGTGTAAGACTC-TGTCTGGGACAAAGGCAT
1 TCGTGTAAGAC-CATGTCTGGGACAAAGGCAT
6823430 TGATATTGAA
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
42 23 0.38
43 4 0.07
44 7 0.11
45 24 0.39
46 3 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACAAAGGCATCGATCTAGATT
Found at i:6834637 original size:40 final size:40
Alignment explanation
Indices: 6834578--6834793 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 40
6834568 CGGATGATAA
6834578 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA-T
* * * *
6834618 TCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* *
6834658 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* *
6834698 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* * * ** *
6834738 CCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
*
6834777 CC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
6834794 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
38 13 0.09
39 14 0.09
40 123 0.81
41 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:6843043 original size:150 final size:150
Alignment explanation
Indices: 6842772--6843071 Score: 582
Period size: 150 Copynumber: 2.0 Consensus size: 150
6842762 TCCCATGTTA
6842772 CAGGGGTCGACTACACTGACCTTTTCCCATTACGACTGGGATATCTCTCTGCACAGAGCTTCAAT
1 CAGGGGTCGACTACACTGACCTTTTCCCATTACGACTGGGATATCTCTCTGCACAGAGCTTCAAT
6842837 ACTGATGCCGTTTGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATGGTATGACC
66 ACTGATGCCGTTTGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATGGTATGACC
6842902 CCTAATTATCTCTGGTCAAT
131 CCTAATTATCTCTGGTCAAT
*
6842922 CAGGGGTCGACTACACTGACCTTTTCCCATTTCGACTGGGATATCTCTCTGCACAGAGCTTCAAT
1 CAGGGGTCGACTACACTGACCTTTTCCCATTACGACTGGGATATCTCTCTGCACAGAGCTTCAAT
*
6842987 ACTGATGCCGTTTGTTTCTATGGAAACTAGACTCAGAGAGGAATCTATACATATATGGTATGACC
66 ACTGATGCCGTTTGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATGGTATGACC
6843052 CCTAATTATCTCTGGTCAAT
131 CCTAATTATCTCTGGTCAAT
6843072 TTATAGTGAA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 148 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (150 bp):
CAGGGGTCGACTACACTGACCTTTTCCCATTACGACTGGGATATCTCTCTGCACAGAGCTTCAAT
ACTGATGCCGTTTGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATGGTATGACC
CCTAATTATCTCTGGTCAAT
Found at i:6844227 original size:40 final size:40
Alignment explanation
Indices: 6844136--6844305 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
6844126 TCCTCGTTCA
* * * * *
6844136 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
6844175 CATGCCTTCGGGACGTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
6844215 AATGCCTTCGGGACTTAACCCGGCTTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
6844255 AATGCCCTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
6844295 AAGGCCTTCGG
1 AATGCCTTCGG
6844306 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:6848031 original size:43 final size:43
Alignment explanation
Indices: 6847868--6848037 Score: 207
Period size: 43 Copynumber: 4.0 Consensus size: 43
6847858 TCTGAATTCA
** * **
6847868 TTCACCGGCATT-TCTCCTGCTTGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * * * *
6847910 TTCACCAGCATTATAGACTGCTAGGCCCGAGGCCCAATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
6847953 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
6847996 TTCACCGGTATTATAGCCTGCTAGGCCCAAAGCCCGTATATC
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATC
6848038 GCATTTTGAT
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
42 11 0.10
43 91 0.85
44 5 0.05
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:6849868 original size:41 final size:40
Alignment explanation
Indices: 6849819--6849981 Score: 145
Period size: 41 Copynumber: 4.0 Consensus size: 40
6849809 AGCCCGATTC
* *
6849819 TTAG-CACTGGCTCAAAAGCCCTTTGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
* * * * *
6849858 TTAGACCACTGGCTCGAAGGCCCTTCGGAACTAAG-TC-AA
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
* * * *
6849897 GTTATGACATTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 -TTA-GACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--A
*
6849941 TTAG-CACTGGCTCAAAGGCCCTTCGAAACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
6849980 TT
1 TT
6849982 TAAACCCCGA
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
39 8 0.08
40 30 0.30
41 56 0.57
42 1 0.01
43 3 0.03
44 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
Found at i:6858849 original size:40 final size:40
Alignment explanation
Indices: 6858794--6858984 Score: 251
Period size: 40 Copynumber: 4.8 Consensus size: 40
6858784 TGGATGATAA
* * *
6858794 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
6858834 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
6858874 CCGAGCTAAGTACCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
6858914 CCGGGCTAAGTCCCAAAGGCATTGGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
6858954 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
6858985 AGTTATATCC
Statistics
Matches: 131, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 8 0.06
40 123 0.94
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:6860626 original size:41 final size:40
Alignment explanation
Indices: 6860574--6860736 Score: 145
Period size: 41 Copynumber: 4.0 Consensus size: 40
6860564 AGCCCGATTC
*
6860574 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
* * * * *
6860613 TTAGACCATTGGCTCGAAGGCCCTTCGGAACTAAG-TCCGG-
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAAACCAAGCT-CGGA
* * * *
6860653 TTATGACACTGGCTCTACAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--A
* *
6860696 TTAG-CACTGGCTCAAAGGCCCTTCAAAACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
6860735 TT
1 TT
6860737 TAAACCCCGA
Statistics
Matches: 99, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
39 7 0.07
40 31 0.31
41 57 0.58
42 1 0.01
43 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGA
Found at i:6868029 original size:43 final size:43
Alignment explanation
Indices: 6867934--6868104 Score: 218
Period size: 43 Copynumber: 4.0 Consensus size: 43
6867924 TTTGAATTCA
* **
6867934 TTCACTGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * * * *
6867976 TTCACCGGCATTATAGCCTACTAGGCCCGAGGCCCAATATTAT
1 TTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
6868019 CTCACTGGCATTATAACCTGCTAGGCCAGAAGCCCGATATCAT
1 TTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
6868062 TTCACTGGCATTATAGCCTGCTAGGCCCAAAGCCCGTATATCA
1 TTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
6868105 AATTTCGATA
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
42 11 0.10
43 90 0.84
44 6 0.06
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (43 bp):
TTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:6868935 original size:70 final size:70
Alignment explanation
Indices: 6868818--6868952 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
6868808 TAGCACATAA
* * * *
6868818 CACCATGATTTTGTCCTAATTTGGACAGCCAATAATTTACAGTATTACAGCAGCATATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
6868883 CTAAG
66 CTAAG
6868888 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
1 CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
6868953 TAATAAACTA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.31
Consensus pattern (70 bp):
CACCATAAATTTGTCCTAATTTGGACAGCCAATAATTTACAGCATTACAGCAGCAAATTAATTAG
CTAAG
Found at i:6875822 original size:25 final size:25
Alignment explanation
Indices: 6875788--6875897 Score: 174
Period size: 23 Copynumber: 4.6 Consensus size: 25
6875778 CTCTTTCAAT
6875788 GGCATAAGCCCTTTATCATAACTGG
1 GGCATAAGCCCTTTATCATAACTGG
*
6875813 GGCATAAGCCCTTCATCATAACTGG
1 GGCATAAGCCCTTTATCATAACTGG
6875838 GGCATAAGCCCTTTA--ATAACTGG
1 GGCATAAGCCCTTTATCATAACTGG
*
6875861 GGCATAAGCCC-TT-TGATAACTGG
1 GGCATAAGCCCTTTATCATAACTGG
6875884 GGCATAAGCCCTTT
1 GGCATAAGCCCTTT
6875898 TGCACTTCCT
Statistics
Matches: 80, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
22 2 0.03
23 38 0.47
24 2 0.03
25 38 0.47
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
GGCATAAGCCCTTTATCATAACTGG
Found at i:6875972 original size:20 final size:20
Alignment explanation
Indices: 6875944--6875987 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
6875934 GCATTTATGA
6875944 ACATCTCATGTGCATATCAT
1 ACATCTCATGTGCATATCAT
*
6875964 ACATGTCATGTGCATATCAT
1 ACATCTCATGTGCATATCAT
6875984 ACAT
1 ACAT
6875988 ACCATGTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (20 bp):
ACATCTCATGTGCATATCAT
Found at i:6875993 original size:20 final size:20
Alignment explanation
Indices: 6875950--6875994 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
6875940 ATGAACATCT
**
6875950 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
6875970 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
6875990 CATGT
1 CATGT
6875995 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:6876063 original size:25 final size:25
Alignment explanation
Indices: 6876031--6876078 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
6876021 ATATATAAAC
* *
6876031 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
6876056 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
6876079 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:6878436 original size:93 final size:93
Alignment explanation
Indices: 6878324--6878495 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
6878314 CGCCCATAAG
*
6878324 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
6878388 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
6878417 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
6878482 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
6878496 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:6878490 original size:46 final size:46
Alignment explanation
Indices: 6878317--6878492 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
6878307 TGTAACCCGC
* *
6878317 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
6878363 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
6878413 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
6878456 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
6878493 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:6885976 original size:24 final size:24
Alignment explanation
Indices: 6885939--6886020 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
6885929 ATGGAGGCCT
* *
6885939 AGCCTCTTTCAATAACTTGGGCAAA
1 AGCC-CTTTTAATAACTTGGGCATA
*
6885964 AGCCCTTTTAATAA-TTGGGGTATA
1 AGCCCTTTTAATAACTT-GGGCATA
*
6885988 AGCCCTTTTGATAAC-TGAGGCATA
1 AGCCCTTTTAATAACTTG-GGCATA
*
6886012 AGCTCTTTT
1 AGCCCTTTT
6886021 GCGCTTCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 3 0.06
24 41 0.85
25 4 0.08
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (24 bp):
AGCCCTTTTAATAACTTGGGCATA
Found at i:6889990 original size:46 final size:46
Alignment explanation
Indices: 6889940--6890060 Score: 215
Period size: 46 Copynumber: 2.6 Consensus size: 46
6889930 TGGTTGAGCA
* *
6889940 TCCGAACTCGGTGAGTGGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
6889986 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
6890032 TCCGAACTCGTTGAGTTGTGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
6890061 GTGAAATGTA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:6890374 original size:19 final size:20
Alignment explanation
Indices: 6890337--6890374 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
6890327 ATAAGGTGGT
6890337 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
6890357 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
6890375 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:6899151 original size:10 final size:10
Alignment explanation
Indices: 6899138--6899188 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
6899128 AGCTCACTTG
*
6899138 AGCTTGTTTC
1 AGCTCGTTTC
*
6899148 AGCTCGTTTT
1 AGCTCGTTTC
*
6899158 AGCTCGTTTT
1 AGCTCGTTTC
6899168 AGCTTC-TTTCC
1 AGC-TCGTTT-C
6899179 AGCTCGTTTC
1 AGCTCGTTTC
6899189 TTATTCTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
10 27 0.77
11 8 0.23
ACGTcount: A:0.10, C:0.25, G:0.18, T:0.47
Consensus pattern (10 bp):
AGCTCGTTTC
Found at i:6899161 original size:30 final size:31
Alignment explanation
Indices: 6899127--6899187 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
6899117 CAGCTCTAAC
*
6899127 TAGCTCACTTGAGCTTGTTT-CAGCTCGTTT
1 TAGCTCACTTGAGCTTCTTTCCAGCTCGTTT
** *
6899157 TAGCTCGTTTTAGCTTCTTTCCAGCTCGTTT
1 TAGCTCACTTGAGCTTCTTTCCAGCTCGTTT
6899188 CTTATTCTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.11, C:0.25, G:0.18, T:0.46
Consensus pattern (31 bp):
TAGCTCACTTGAGCTTCTTTCCAGCTCGTTT
Found at i:6899620 original size:28 final size:28
Alignment explanation
Indices: 6899580--6899634 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
6899570 GGTTGAAAAG
*
6899580 ATACATTCACTTTGGATGGCACACATGC
1 ATACATTCACTTTGGACGGCACACATGC
*
6899608 ATACATTCACTTTGGACGGTACACATG
1 ATACATTCACTTTGGACGGCACACATG
6899635 AATGAATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (28 bp):
ATACATTCACTTTGGACGGCACACATGC
Found at i:6901629 original size:19 final size:20
Alignment explanation
Indices: 6901601--6901653 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
6901591 AGTGTGAAAG
6901601 AAAGCAAAAAGAGAATA-AGAA
1 AAAG-AAAAAGAGAA-AGAGAA
*
6901622 AAAGAAAAA-AGAAAGTGAA
1 AAAGAAAAAGAGAAAGAGAA
6901641 AAAGAAAAAGAGA
1 AAAGAAAAAGAGA
6901654 TCGAGAGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 1 0.03
19 16 0.55
20 8 0.28
21 4 0.14
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.04
Consensus pattern (20 bp):
AAAGAAAAAGAGAAAGAGAA
Found at i:6901648 original size:18 final size:18
Alignment explanation
Indices: 6901619--6901701 Score: 62
Period size: 18 Copynumber: 4.6 Consensus size: 18
6901609 AAGAGAATAA
6901619 GAAAAAGAAAAAAGAAAGT
1 GAAAAAG-AAAAAGAAAGT
*
6901638 GAAAAAGAAAAAGAGA-T
1 GAAAAAGAAAAAGAAAGT
* ** *
6901655 CGAGAGTGAAAAAGAATGT
1 -GAAAAAGAAAAAGAAAGT
* *
6901674 G-AGAAGAAAAAGAAAATT
1 GAAAAAGAAAAAG-AAAGT
6901692 GAAAAAGAAA
1 GAAAAAGAAA
6901702 TTGAGTCTGA
Statistics
Matches: 47, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
17 8 0.17
18 24 0.51
19 15 0.32
ACGTcount: A:0.66, C:0.01, G:0.24, T:0.08
Consensus pattern (18 bp):
GAAAAAGAAAAAGAAAGT
Found at i:6902013 original size:36 final size:36
Alignment explanation
Indices: 6901957--6902031 Score: 105
Period size: 36 Copynumber: 2.1 Consensus size: 36
6901947 CCAAAAGGTA
*
6901957 AGCAAGGTATGAGTTTTGAAGTCTATAAAACATATC
1 AGCAAGGTATGAGTTTTGAAGTCTATAAAACACATC
* * * *
6901993 AGCAGGGTTTGAGTTTTGAAGTTTTTAAAACACATC
1 AGCAAGGTATGAGTTTTGAAGTCTATAAAACACATC
6902029 AGC
1 AGC
6902032 CTCATTTGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (36 bp):
AGCAAGGTATGAGTTTTGAAGTCTATAAAACACATC
Found at i:6902040 original size:36 final size:36
Alignment explanation
Indices: 6901966--6902040 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
6901956 AAGCAAGGTA
* **
6901966 TGAGTTTTGAAGTCTATAAAACATATCAGCAGGGTT
1 TGAGTTTTGAAGTCTATAAAACACATCAGCAGCATT
* * **
6902002 TGAGTTTTGAAGTTTTTAAAACACATCAGCCTCATT
1 TGAGTTTTGAAGTCTATAAAACACATCAGCAGCATT
6902038 TGA
1 TGA
6902041 TTGTTGACGG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (36 bp):
TGAGTTTTGAAGTCTATAAAACACATCAGCAGCATT
Found at i:6903480 original size:20 final size:20
Alignment explanation
Indices: 6903457--6903501 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
6903447 CAGCTCCAAC
*
6903457 CAGCTCACTTGAGCTTGTTT
1 CAGCTCACTTGAGCTCGTTT
**
6903477 CAGCTCGTTTGAGCTCGTTT
1 CAGCTCACTTGAGCTCGTTT
*
6903497 TAGCT
1 CAGCT
6903502 TCTTTCCATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.40
Consensus pattern (20 bp):
CAGCTCACTTGAGCTCGTTT
Found at i:6904238 original size:42 final size:42
Alignment explanation
Indices: 6904191--6904275 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
6904181 AAGTTGTCCA
6904191 ATGGAGTTCACATCAACCGAACCTAGCCTTAGCAAATTAAAT
1 ATGGAGTTCACATCAACCGAACCTAGCCTTAGCAAATTAAAT
6904233 ATGGAGTTCACATCAACCGAACCTAGCCTTAGCAAATTAAAT
1 ATGGAGTTCACATCAACCGAACCTAGCCTTAGCAAATTAAAT
6904275 A
1 A
6904276 ACTTGTTCTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.24
Consensus pattern (42 bp):
ATGGAGTTCACATCAACCGAACCTAGCCTTAGCAAATTAAAT
Found at i:6910637 original size:20 final size:20
Alignment explanation
Indices: 6910614--6910678 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
6910604 AAACAAGTTT
6910614 CCAGTAATGTGGACAAGCCA
1 CCAGTAATGTGGACAAGCCA
** * * **
6910634 CCAGTGCTATAGACAAGCTG
1 CCAGTAATGTGGACAAGCCA
*
6910654 CCAATAATGTGGACAAGCCA
1 CCAGTAATGTGGACAAGCCA
6910674 CCAGT
1 CCAGT
6910679 GTTGCAGATA
Statistics
Matches: 31, Mismatches: 14, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (20 bp):
CCAGTAATGTGGACAAGCCA
Found at i:6910692 original size:40 final size:40
Alignment explanation
Indices: 6910571--6910739 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
6910561 TGCAGTTAAA
* * * * *
6910571 CTGCCAATATTGTGGACAAGCCACAAGTTTTTCAAACAAG
1 CTGCCAATAATGTGGACAAGCCACCAGTGTTGCAGACAAG
* * * * **
6910611 TTTCCAGTAATGTGGACAAGCCACCAGTGCTATAGACAAG
1 CTGCCAATAATGTGGACAAGCCACCAGTGTTGCAGACAAG
*
6910651 CTGCCAATAATGTGGACAAGCCACCAGTGTTGCAGATAAG
1 CTGCCAATAATGTGGACAAGCCACCAGTGTTGCAGACAAG
* ** **
6910691 CTGCCAGTAATGTTTACAAGCCACCAGAATTGCAGACAAG
1 CTGCCAATAATGTGGACAAGCCACCAGTGTTGCAGACAAG
6910731 CTGCCAATA
1 CTGCCAATA
6910740 CTTCCTCCTT
Statistics
Matches: 105, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.22
Consensus pattern (40 bp):
CTGCCAATAATGTGGACAAGCCACCAGTGTTGCAGACAAG
Found at i:6913286 original size:29 final size:29
Alignment explanation
Indices: 6913245--6913307 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
6913235 ACAAAGGCAG
* * *
6913245 TTTTAATAGAGATCACCATAAAGGTTTCC
1 TTTTAACAGAGATCACCACAAAGGTGTCC
* **
6913274 TTTTAACATAGATTGCCACAAAGGTGTCC
1 TTTTAACAGAGATCACCACAAAGGTGTCC
6913303 TTTTA
1 TTTTA
6913308 CAAAAATTGC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (29 bp):
TTTTAACAGAGATCACCACAAAGGTGTCC
Found at i:6913325 original size:29 final size:29
Alignment explanation
Indices: 6913264--6913323 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
6913254 AGATCACCAT
* * *
6913264 AAAGGTTTCCTTTTAACATAGATTGCCAC
1 AAAGGTGTCCTTTTAACAAAAATTGCCAC
6913293 AAAGGTGTCCTTTT-ACAAAAATTGCCAC
1 AAAGGTGTCCTTTTAACAAAAATTGCCAC
6913321 AAA
1 AAA
6913324 AGAACTTCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 15 0.54
29 13 0.46
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (29 bp):
AAAGGTGTCCTTTTAACAAAAATTGCCAC
Found at i:6916605 original size:28 final size:28
Alignment explanation
Indices: 6916574--6916644 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
6916564 GGCCATATTC
*
6916574 GGCCTGATGGGCCATATGAATGTGATTG
1 GGCCTGATGGGCCATATGAATGAGATTG
* *
6916602 GGCCTGATAGACCATATGAATGAGATTG
1 GGCCTGATGGGCCATATGAATGAGATTG
6916630 GGCCTGAATGGGCCA
1 GGCCTG-ATGGGCCA
6916645 AAATGAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 31 0.84
29 6 0.16
ACGTcount: A:0.25, C:0.17, G:0.34, T:0.24
Consensus pattern (28 bp):
GGCCTGATGGGCCATATGAATGAGATTG
Found at i:6920907 original size:16 final size:16
Alignment explanation
Indices: 6920882--6920913 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
6920872 AACAAATCCC
*
6920882 GAAATGCCGAAAAGCT
1 GAAATACCGAAAAGCT
6920898 GAAATACCGAAAAGCT
1 GAAATACCGAAAAGCT
6920914 AAAAGTTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (16 bp):
GAAATACCGAAAAGCT
Found at i:6921163 original size:28 final size:28
Alignment explanation
Indices: 6921130--6921230 Score: 139
Period size: 28 Copynumber: 3.6 Consensus size: 28
6921120 ATTGCATGAC
**
6921130 TATGAATGTGATTGGGCTTGGCGGGCCA
1 TATGAATGTGATTGGGCTTGATGGGCCA
*
6921158 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAATGTGATTGGGCTTGATGGGCCA
** *
6921186 TATGAATGTGATTGGGCCCGATAGGCCA
1 TATGAATGTGATTGGGCTTGATGGGCCA
*
6921214 TATGAATGAGATTGGGC
1 TATGAATGTGATTGGGC
6921231 CAAATGAATA
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.24, C:0.13, G:0.36, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCTTGATGGGCCA
Found at i:6922503 original size:16 final size:17
Alignment explanation
Indices: 6922471--6922504 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6922461 TTTAAAGAAG
6922471 GGTTTTCAATGAAAACAA
1 GGTTTTCAA-GAAAACAA
6922489 GGTTTTCAA-AAAACAA
1 GGTTTTCAAGAAAACAA
6922505 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.26
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAA
Found at i:6925403 original size:30 final size:30
Alignment explanation
Indices: 6925369--6925427 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
6925359 CTTCCTGTTG
6925369 TTTGTGAGTACCCTAATGTGTTTCCTGAAT
1 TTTGTGAGTACCCTAATGTGTTTCCTGAAT
* *
6925399 TTTGTGAGTTCCCTCATGTGTTTCCTGAA
1 TTTGTGAGTACCCTAATGTGTTTCCTGAA
6925428 GAACTTTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (30 bp):
TTTGTGAGTACCCTAATGTGTTTCCTGAAT
Found at i:6926300 original size:19 final size:19
Alignment explanation
Indices: 6926276--6926313 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
6926266 CTTCAAAAAG
6926276 ATGTGAAATTTGTGTGGTC
1 ATGTGAAATTTGTGTGGTC
6926295 ATGTGAAATTTGTGTGGTC
1 ATGTGAAATTTGTGTGGTC
6926314 TAAAAAGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.32, T:0.42
Consensus pattern (19 bp):
ATGTGAAATTTGTGTGGTC
Found at i:6930979 original size:42 final size:41
Alignment explanation
Indices: 6930930--6931036 Score: 124
Period size: 42 Copynumber: 2.6 Consensus size: 41
6930920 TTCAAATCGT
* *
6930930 ACACTAAGTGCCATACATAACTGAAGCTATCACATTTCTCGC
1 ACACTAAGTGCCATACATAACCGAAGCTATCACA-ATCTCGC
** * * *
6930972 ACACTAAGTGCCATATGTAGCCGAAGCTATCTCAATCTTGC
1 ACACTAAGTGCCATACATAACCGAAGCTATCACAATCTCGC
* *
6931013 ACACTAAGTGCCATATATAGCCGA
1 ACACTAAGTGCCATACATAACCGA
6931037 TTTGTTATCA
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 28 0.49
42 29 0.51
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (41 bp):
ACACTAAGTGCCATACATAACCGAAGCTATCACAATCTCGC
Found at i:6933000 original size:53 final size:53
Alignment explanation
Indices: 6932915--6933121 Score: 146
Period size: 53 Copynumber: 3.8 Consensus size: 53
6932905 TTGCTTTTTA
* * ** *
6932915 AACTTACCATTGCCATGTCTTGACATTGTCTTATGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
6932968 AACTCACCATTGCCATG-CATTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTCACCATTGCCATGTC-TTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * * * * *** *
6933022 TAGTTTATCAATGCCATGTCTTGACATGATATTACATGATTTCCTTGCCTTATAA
1 -AACTCACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * * * * * *
6933077 AACTTACGAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTT
6933122 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 32, Indels: 7
0.75 0.20 0.04
Matches are distributed among these distances:
52 1 0.01
53 43 0.36
54 35 0.30
55 38 0.32
56 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:6936025 original size:39 final size:39
Alignment explanation
Indices: 6935982--6936105 Score: 203
Period size: 39 Copynumber: 3.2 Consensus size: 39
6935972 GGACTTTAGC
* * * * *
6935982 CCGGACATATTTCCAGCACGTAGCCTACGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
6936021 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
6936060 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
6936099 CCGGATA
1 CCGGATA
6936106 CACATCAAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:6946002 original size:20 final size:20
Alignment explanation
Indices: 6945979--6946016 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6945969 CACATCCAAA
* *
6945979 TACAAAATTTTTAAAATCTT
1 TACAAAATATTGAAAATCTT
6945999 TACAAAATATTGAAAATC
1 TACAAAATATTGAAAATC
6946017 ACGAATAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.37
Consensus pattern (20 bp):
TACAAAATATTGAAAATCTT
Found at i:6956305 original size:53 final size:53
Alignment explanation
Indices: 6956205--6956411 Score: 148
Period size: 53 Copynumber: 3.8 Consensus size: 53
6956195 TTCCTTTTTA
* * *
6956205 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTCATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTCATG
* * *
6956258 AACTCACCATTTCCATGCCTTAGA-ATGGTCTTACAT-GTGATCTTTGCCTTATCG
1 AACTCACCATTGCCATGCCTT-GACATGGTCTTACATGGT-ATCCTTGCCTCAT-G
** * * * * * * * * * *
6956312 TAGTTTATCAATGCCATGTCTTGACATGATATTACATGATTTCCTTGCCTTATAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTCAT-G
* * ** *
6956367 AACTTACCAATGCCATGCCTTGGTATGGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
6956412 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 31, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
52 2 0.02
53 40 0.34
54 39 0.33
55 35 0.30
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTCATG
Found at i:6960527 original size:47 final size:47
Alignment explanation
Indices: 6960473--6961490 Score: 1919
Period size: 47 Copynumber: 21.6 Consensus size: 47
6960463 TATTTGAATA
6960473 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960520 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960567 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960614 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960661 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
6960708 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960755 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960802 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960849 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960896 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960943 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6960990 AATGTGAAAGTGTATATATATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
6961041 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6961088 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6961135 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6961182 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6961229 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6961276 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6961323 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
6961370 AATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
6961417 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
6961464 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
6961491 TCCCGAAGGG
Statistics
Matches: 955, Mismatches: 12, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
47 902 0.94
49 12 0.01
51 41 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:6963145 original size:23 final size:23
Alignment explanation
Indices: 6963071--6963145 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 23
6963061 TGCTAGTGAT
6963071 GTATTCGGGCTAAGTCTCGAAGA
1 GTATTCGGGCTAAGTCTCGAAGA
* * *
6963094 GCATTCGTGCT-AG--T-G-A-T
1 GTATTCGGGCTAAGTCTCGAAGA
*
6963111 GTATCCGGGCTAAGTCTCGAAGA
1 GTATTCGGGCTAAGTCTCGAAGA
*
6963134 GTATTCGTGCTA
1 GTATTCGGGCTA
6963146 GTGATGTATC
Statistics
Matches: 37, Mismatches: 9, Indels: 12
0.64 0.16 0.21
Matches are distributed among these distances:
17 8 0.22
18 3 0.08
19 1 0.03
20 2 0.05
21 1 0.03
22 3 0.08
23 19 0.51
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (23 bp):
GTATTCGGGCTAAGTCTCGAAGA
Found at i:6963268 original size:40 final size:40
Alignment explanation
Indices: 6962905--6963256 Score: 551
Period size: 40 Copynumber: 8.8 Consensus size: 40
6962895 GAGAATTGAG
*
6962905 AGTGATGTATCCCGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
6962945 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
6962985 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
6963025 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
6963065 AGTGATGTATTCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
6963105 AGTGATGTATCCGGGCTAAGTCTCGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
6963145 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
6963185 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
6963225 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
6963257 ATCATGCTGG
Statistics
Matches: 287, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 287 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:6967338 original size:47 final size:47
Alignment explanation
Indices: 6967283--6967875 Score: 907
Period size: 47 Copynumber: 12.6 Consensus size: 47
6967273 TATTTGAATA
6967283 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
6967330 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
6967377 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
6967426 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
6967473 AATGTGAAAGTGTATATATGTGATGAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
6967520 AATGTGCAAGTGTATATATGTGATGAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
6967567 AATGTGCAAGTGTATATATGTGATGAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
6967614 AATATGAAAGTGGATATATGTGATAAGGCCTAATAGCCGCTGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
6967661 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
6967708 AATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
6967755 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
6967802 AATGTGAAAGTGTATATGTGGGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
6967849 GATGGGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
6967876 TCTCAAAGGG
Statistics
Matches: 507, Mismatches: 37, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
47 462 0.91
49 45 0.09
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:6967518 original size:22 final size:22
Alignment explanation
Indices: 6967490--6967614 Score: 78
Period size: 22 Copynumber: 5.4 Consensus size: 22
6967480 AAGTGTATAT
6967490 ATGTGATGAGGCCTAATGACCG
1 ATGTGATGAGGCCTAATGACCG
***
6967512 ATGTGATGAATGTG-C-AAGTGTATAT
1 ATGTGATG-A-G-GCCTAA-TG-ACCG
6967537 ATGTGATGAGGCCTAATGACCG
1 ATGTGATGAGGCCTAATGACCG
***
6967559 ATGTGATGAATGTG-C-AAGTGTATAT
1 ATGTGATG-A-G-GCCTAA-TG-ACCG
6967584 ATGTGATGAGGCCTAATGACCG
1 ATGTGATGAGGCCTAATGACCG
6967606 ATGTGATGA
1 ATGTGATGA
6967615 ATATGAAAGT
Statistics
Matches: 77, Mismatches: 12, Indels: 28
0.66 0.10 0.24
Matches are distributed among these distances:
22 29 0.38
23 14 0.18
24 14 0.18
25 20 0.26
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.29
Consensus pattern (22 bp):
ATGTGATGAGGCCTAATGACCG
Found at i:6969961 original size:30 final size:29
Alignment explanation
Indices: 6969922--6969980 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 29
6969912 GTAGCCGAAG
*
6969922 CTAGTTAAATCGCACACTTAGTGCCAAAA
1 CTAGTTAAATCGCACAATTAGTGCCAAAA
6969951 CTAGTTTAAATCGCACAATTAGTGCCAAAA
1 CTAG-TTAAATCGCACAATTAGTGCCAAAA
6969981 AATCCTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (29 bp):
CTAGTTAAATCGCACAATTAGTGCCAAAA
Found at i:6978455 original size:40 final size:40
Alignment explanation
Indices: 6978392--6978575 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
6978382 TATTATAATG
*
6978392 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
6978432 ATATCCGGACTAAGATCCAAAGGCATTTGTG-TGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCT-AGTGACT
* * * * * *
6978472 ATCTCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
6978512 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
6978552 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
6978576 CTTGTGCGAG
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 1 0.01
40 115 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:6978535 original size:80 final size:79
Alignment explanation
Indices: 6978392--6978607 Score: 240
Period size: 80 Copynumber: 2.7 Consensus size: 79
6978382 TATTATAATG
* * * *
6978392 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAG-TCCCAAAGGC
* * *
6978456 ATTTGTG-TGAGTTACT
64 ATTTATGCT-AGTGACC
* * * *
6978472 ATCTCTGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGTCCCAAAGGCA
6978537 TTTATGCTAGTGACC
65 TTTATGCTAGTGACC
* * * *
6978552 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGTCCC
6978608 TAAGATACTT
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
78 10 0.09
79 18 0.16
80 86 0.75
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGTCCCAAAGGCAT
TTATGCTAGTGACC
Found at i:6986617 original size:40 final size:40
Alignment explanation
Indices: 6986557--6986740 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
6986547 TATTCGAATG
*
6986557 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
6986597 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
6986637 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
6986677 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
6986717 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
6986741 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:6986690 original size:80 final size:80
Alignment explanation
Indices: 6986557--6986776 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 80
6986547 TATTCGAATG
* * * *
6986557 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
6986621 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
6986637 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
6986701 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
6986717 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
6986777 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 90 0.73
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:6992455 original size:18 final size:18
Alignment explanation
Indices: 6992432--6992469 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
6992422 ATACCTTGAT
6992432 TATTTAGGCATAATTAAC
1 TATTTAGGCATAATTAAC
6992450 TATTTAGGCATAATTAAC
1 TATTTAGGCATAATTAAC
6992468 TA
1 TA
6992470 ATCCATTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (18 bp):
TATTTAGGCATAATTAAC
Found at i:6996826 original size:28 final size:28
Alignment explanation
Indices: 6996794--6996861 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 28
6996784 AATGAGATTG
6996794 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
6996822 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
6996850 GCACTAAGTGTG
1 GCACTAAGTGTG
6996862 TGACTTTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
28 32 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:7004364 original size:28 final size:27
Alignment explanation
Indices: 7004332--7004407 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 27
7004322 AATGAGATTG
7004332 GCACTAAGTGTGCGAGTTTAAT-TGTACA
1 GCACTAAGTGTGCGAGTTTAATAT-TA-A
*
7004360 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTT-AATATTAA
*
7004388 GCACTAAGTGTGCGACTTTA
1 GCACTAAGTGTGCGAGTTTA
7004408 TCGAGTAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
27 1 0.02
28 38 0.86
29 4 0.09
30 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTTAATATTAA
Found at i:7009336 original size:26 final size:25
Alignment explanation
Indices: 7009306--7009354 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
7009296 TTATTATTAT
7009306 ACATA-CATTACACCAGTTAAACAAAC
1 ACATAGCATT-CACCA-TTAAACAAAC
*
7009332 ACATAGTATTCACCATTAAACAA
1 ACATAGCATTCACCATTAAACAA
7009355 TCTGCATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 8 0.38
26 10 0.48
27 3 0.14
ACGTcount: A:0.49, C:0.24, G:0.04, T:0.22
Consensus pattern (25 bp):
ACATAGCATTCACCATTAAACAAAC
Found at i:7012225 original size:8 final size:8
Alignment explanation
Indices: 7012212--7012238 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
7012202 GAAGAATAGC
7012212 AAAAGCCG
1 AAAAGCCG
7012220 AAAAGCCG
1 AAAAGCCG
7012228 AAAAGCCG
1 AAAAGCCG
7012236 AAA
1 AAA
7012239 GAATGGCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.56, C:0.22, G:0.22, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:7012682 original size:27 final size:27
Alignment explanation
Indices: 7012652--7012705 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7012642 ATGACCAAAA
7012652 TACCCCTAAAGGGTAAATTGACT-ATTT
1 TACCCCTAAAGGGTAAA-TGACTGATTT
**
7012679 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAAAGGGTAAATGACTGATTT
7012706 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAAAGGGTAAATGACTGATTT
Found at i:7018085 original size:24 final size:24
Alignment explanation
Indices: 7018035--7018088 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
7018025 AATCGAATTT
*
7018035 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
7018059 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
7018083 GCACAC
1 GCACAC
7018089 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:7020335 original size:16 final size:16
Alignment explanation
Indices: 7020316--7020351 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7020306 GGCAAAAGCA
7020316 GAAATGCCGAAAAGTC
1 GAAATGCCGAAAAGTC
* *
7020332 GAAATGCTGAAAAGTT
1 GAAATGCCGAAAAGTC
7020348 GAAA
1 GAAA
7020352 GTTTAGCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.11, G:0.25, T:0.17
Consensus pattern (16 bp):
GAAATGCCGAAAAGTC
Found at i:7021860 original size:40 final size:40
Alignment explanation
Indices: 7021781--7021957 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
7021771 CGGATGATAA
* * * *
7021781 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
7021821 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
7021861 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
7021901 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
7021941 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
7021958 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:7032633 original size:12 final size:13
Alignment explanation
Indices: 7032599--7032638 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
7032589 TTTTTTTAAG
7032599 TAGTTTATTGATA
1 TAGTTTATTGATA
7032612 TAGTCATTATT-ATA
1 TAGT--TTATTGATA
7032626 TAGTTTATTGATA
1 TAGTTTATTGATA
7032639 AAAATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 7 0.29
15 5 0.21
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.53
Consensus pattern (13 bp):
TAGTTTATTGATA
Found at i:7042244 original size:28 final size:28
Alignment explanation
Indices: 7042204--7042314 Score: 152
Period size: 28 Copynumber: 3.9 Consensus size: 28
7042194 CATGACTGTA
7042204 AATGTGATTTGGGCCTAAT-GGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATG
* *
7042232 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAATGGGCCATATG
7042261 AATGTGATTGGGCCTAATGGGCCATATG
1 AATGTGATTGGGCCTAATGGGCCATATG
* * *
7042289 AATGAGATTGGGCCTAGTAGGCCATA
1 AATGTGATTGGGCCTAATGGGCCATA
7042315 AGCATGTATG
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
28 61 0.81
29 14 0.19
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATG
Found at i:7042312 original size:56 final size:57
Alignment explanation
Indices: 7042202--7042312 Score: 172
Period size: 56 Copynumber: 2.0 Consensus size: 57
7042192 AGCATGACTG
* *
7042202 TAAATGTGATTTGGGCCTAATGGCCATATGAATGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGCCATATGAATGAGATTTGGGCCTAATAGGCCACA
*
7042259 TAAATGTGA-TTGGGCCTAATGGGCCATATGAATGAGA-TTGGGCCTAGTAGGCCA
1 TAAATGTGATTTGGGCCTAAT-GGCCATATGAATGAGATTTGGGCCTAATAGGCCA
7042313 TAAGCATGTA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
56 26 0.52
57 24 0.48
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGCCATATGAATGAGATTTGGGCCTAATAGGCCACA
Found at i:7047137 original size:27 final size:27
Alignment explanation
Indices: 7047091--7047253 Score: 134
Period size: 27 Copynumber: 6.1 Consensus size: 27
7047081 TGCCCCTGTA
* *
7047091 GACCGTAATACCCCTATAGGGTAAAAT
1 GACCATAATACCCCTGTAGGGTAAAAT
* *
7047118 GACTATGATACCCCTGTAGGGTAAAAT
1 GACCATAATACCCCTGTAGGGTAAAAT
* **
7047145 GACCGTAACCCCCCTGTAGGGTAAAAT
1 GACCATAATACCCCTGTAGGGTAAAAT
* * * *
7047172 GATCGTAAT-GCCCTGGTAGGATAAAAT
1 GACCATAATACCCCT-GTAGGGTAAAAT
* * * *
7047199 AACCGTAAT-GCCCTGTAGGGGAAAAT
1 GACCATAATACCCCTGTAGGGTAAAAT
* *
7047225 GACCGTAATACCTCTGTATGGG-AAAAT
1 GACCATAATACCCCTGTA-GGGTAAAAT
7047252 GA
1 GA
7047254 TGATTATGCC
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
26 22 0.19
27 88 0.78
28 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (27 bp):
GACCATAATACCCCTGTAGGGTAAAAT
Found at i:7047224 original size:53 final size:53
Alignment explanation
Indices: 7047129--7047242 Score: 140
Period size: 53 Copynumber: 2.1 Consensus size: 53
7047119 ACTATGATAC
* * * *
7047129 CCCTGTAGGGTAAAATGACCGTAACCCCCCTGTAGGGTAAAATGATCGTAATG
1 CCCTGTAGGATAAAATAACCGTAACCCCCCTGTAGGGGAAAATGACCGTAATG
** *
7047182 CCCTGGTAGGATAAAATAACCGTAA-TGCCCTGTAGGGGAAAATGACCGTAATA
1 CCCT-GTAGGATAAAATAACCGTAACCCCCCTGTAGGGGAAAATGACCGTAATG
7047235 CCTCTGTA
1 CC-CTGTA
7047243 TGGGAAAATG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 32 0.62
54 20 0.38
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.23
Consensus pattern (53 bp):
CCCTGTAGGATAAAATAACCGTAACCCCCCTGTAGGGGAAAATGACCGTAATG
Found at i:7047251 original size:53 final size:51
Alignment explanation
Indices: 7047092--7047251 Score: 149
Period size: 54 Copynumber: 3.0 Consensus size: 51
7047082 GCCCCTGTAG
* ** * *
7047092 ACCGTAATACCCCTATAGGGTAAAATGACTATGATACCCCTGTAGGGTAAAATG
1 ACCGTAAT-CCCCTGTAGGGTAAAATGACCGTAATA-CCCTGTAGGG-AAAATA
* * * *
7047146 ACCGTAACCCCCCTGTAGGGTAAAATGATCGTAATGCCCTGGTAGGATAAAATA
1 ACCGTAA-TCCCCTGTAGGGTAAAATGACCGTAATACCCT-GTAGG-GAAAATA
* *
7047200 ACCGTAATGCCCTGTAGGGGAAAATGACCGTAATACCTCTGTATGGGAAAAT
1 ACCGTAATCCCCTGTAGGGTAAAATGACCGTAATACC-CTGTA-GGGAAAAT
7047252 GATGATTATG
Statistics
Matches: 86, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
53 37 0.43
54 49 0.57
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (51 bp):
ACCGTAATCCCCTGTAGGGTAAAATGACCGTAATACCCTGTAGGGAAAATA
Found at i:7050674 original size:17 final size:18
Alignment explanation
Indices: 7050642--7050676 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7050632 CGTTGAGCCA
7050642 AAATGGGTCGTGTGGGCC
1 AAATGGGTCGTGTGGGCC
*
7050660 AAATGGG-CTTGTGGGCC
1 AAATGGGTCGTGTGGGCC
7050677 CCACGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.17, C:0.17, G:0.43, T:0.23
Consensus pattern (18 bp):
AAATGGGTCGTGTGGGCC
Found at i:7055310 original size:34 final size:33
Alignment explanation
Indices: 7055236--7055330 Score: 111
Period size: 34 Copynumber: 2.8 Consensus size: 33
7055226 ACTTTATTGA
* *
7055236 TACTGTAATGGACTTAGGCGCC-ACTGATACTAT
1 TACTGAAATGGGCTTAGGC-CCAACTGATACTAT
*
7055269 TACTGAAATGGGCTTAGGCCCAAACTGCTACTAT
1 TACTGAAATGGGCTTAGGCCC-AACTGATACTAT
* *
7055303 TATTGAAATGGGCTAAGGCCCTAACTGA
1 TACTGAAATGGGCTTAGGCCC-AACTGA
7055331 AACTGCAATG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
32 2 0.04
33 17 0.32
34 34 0.64
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (33 bp):
TACTGAAATGGGCTTAGGCCCAACTGATACTAT
Found at i:7059923 original size:19 final size:19
Alignment explanation
Indices: 7059899--7059937 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7059889 ATGGTTGAAA
7059899 GGGTGGTGTGAGTAATCAG
1 GGGTGGTGTGAGTAATCAG
7059918 GGGTGGTGTGAGTAATCAG
1 GGGTGGTGTGAGTAATCAG
7059937 G
1 G
7059938 TTGATGCCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.49, T:0.26
Consensus pattern (19 bp):
GGGTGGTGTGAGTAATCAG
Found at i:7060542 original size:87 final size:87
Alignment explanation
Indices: 7060446--7060620 Score: 332
Period size: 87 Copynumber: 2.0 Consensus size: 87
7060436 AAACTTATCA
7060446 AAAAAATATGATTAAATTAAAACTAATCCTAACTCTATATAAAGTTGATAATAATAAATATATAT
1 AAAAAATATGATTAAATTAAAACTAATCCTAACTCTATATAAAGTTGATAATAATAAATATATAT
7060511 AATATAATGTATAGAATTATAT
66 AATATAATGTATAGAATTATAT
**
7060533 AAAAAATATGATTAAATTAAAACTAATTTTAACTCTATATAAAGTTGATAATAATAAATATATAT
1 AAAAAATATGATTAAATTAAAACTAATCCTAACTCTATATAAAGTTGATAATAATAAATATATAT
7060598 AATATAATGTATAGAATTATAT
66 AATATAATGTATAGAATTATAT
7060620 A
1 A
7060621 TTAATAATTA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.53, C:0.05, G:0.06, T:0.37
Consensus pattern (87 bp):
AAAAAATATGATTAAATTAAAACTAATCCTAACTCTATATAAAGTTGATAATAATAAATATATAT
AATATAATGTATAGAATTATAT
Found at i:7064338 original size:29 final size:27
Alignment explanation
Indices: 7064320--7064389 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
7064310 ATATTAAGTC
*
7064320 CGCACAGTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
7064347 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
7064375 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
7064390 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:7064383 original size:28 final size:28
Alignment explanation
Indices: 7064320--7064417 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
7064310 ATATTAAGTC
* *
7064320 CGCACAGTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
7064347 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
7064375 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
7064404 CGCACACTTAGTGC
1 CGCACACTTAGTGC
7064418 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.37
29 19 0.30
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:7077446 original size:39 final size:39
Alignment explanation
Indices: 7077392--7077469 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
7077382 AGCTTTATCC
7077392 CTATCATCAACAATAAGGATAGGATTTTGAGCAAGGTTT
1 CTATCATCAACAATAAGGATAGGATTTTGAGCAAGGTTT
*
7077431 CTATCATCAACAATAAGTATAGGATTTTGAGCAAGGTTT
1 CTATCATCAACAATAAGGATAGGATTTTGAGCAAGGTTT
7077470 GCTCTGTTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (39 bp):
CTATCATCAACAATAAGGATAGGATTTTGAGCAAGGTTT
Found at i:7088489 original size:32 final size:32
Alignment explanation
Indices: 7088453--7088537 Score: 80
Period size: 32 Copynumber: 2.7 Consensus size: 32
7088443 TCAGTAGTGG
* * *
7088453 TATTATCATTGGCACAAAGCCATCAGTAACTA
1 TATTATAATTGGCACAAAGCCATCAGCAACAA
** * *
7088485 TATTATGTTTAGCACATAGCCATCAGCAACAA
1 TATTATAATTGGCACAAAGCCATCAGCAACAA
* * *
7088517 TAATATAATCGGCACACAGCC
1 TATTATAATTGGCACAAAGCC
7088538 TTGGGTAAAT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.26
Consensus pattern (32 bp):
TATTATAATTGGCACAAAGCCATCAGCAACAA
Found at i:7089072 original size:27 final size:27
Alignment explanation
Indices: 7089053--7089145 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
7089043 ACCCTACAAA
*
7089053 GGTATTTCGGTAATCCTACCTTACAGG
1 GGTATTTCGATAATCCTACCTTACAGG
* *
7089080 GGTATTTTGATAATCCTATCTTACAGG
1 GGTATTTCGATAATCCTACCTTACAGG
*
7089107 GGTATTTCGATAATCCTAACC-CACAGG
1 GGTATTTCGATAATCCT-ACCTTACAGG
*
7089134 GTTATTTCGATA
1 GGTATTTCGATA
7089146 GTTTCACAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTATTTCGATAATCCTACCTTACAGG
Found at i:7089166 original size:27 final size:27
Alignment explanation
Indices: 7089131--7089341 Score: 173
Period size: 27 Copynumber: 7.9 Consensus size: 27
7089121 CCTAACCCAC
* *
7089131 AGGGTTATTTCGATAGTTTCACAAATCA
1 AGGG-TATTTCGATAATTTTACAAATCA
* *
7089159 AGGGTATTTCGGTAATTTCACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCA
* *
7089186 GGGGTATTTCAATAATTTTAC-AATC-
1 AGGGTATTTCGATAATTTTACAAATCA
*
7089211 GGGGATATTTC-AGTAATTTTACAAATCA
1 AGGG-TATTTCGA-TAATTTTACAAATCA
* *
7089239 AGGGTATTTTGATAATTTTACAAAT-T
1 AGGGTATTTCGATAATTTTACAAATCA
* *
7089265 AGGGTATTTCAATAATTTTTACAAAT-T
1 AGGGTATTTCGATAA-TTTTACAAATCA
* * * *
7089292 GGAGGTGTTTCGGTAATTTTACAAGTC-
1 AG-GGTATTTCGATAATTTTACAAATCA
* * *
7089319 GGGGTAATTCGATAATTTCACAA
1 AGGGTATTTCGATAATTTTACAA
7089342 CTTAGGGGTA
Statistics
Matches: 155, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
25 5 0.03
26 49 0.32
27 83 0.54
28 18 0.12
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCA
Found at i:7089227 original size:53 final size:52
Alignment explanation
Indices: 7089130--7089354 Score: 193
Period size: 53 Copynumber: 4.2 Consensus size: 52
7089120 TCCTAACCCA
* * * * *
7089130 CAGGGTTATTTCGATAGTTTCACAAATCAAGGGTATTTCGGTAATTTCACAAAT
1 CAGGGGTATTTCGATAATTTTAC-AATC-GGGGTATTTCAGTAATTTCACAAAT
* *
7089184 CAGGGGTATTTCAATAATTTTACAATCGGGGATATTTCAGTAATTTTACAAAT
1 CAGGGGTATTTCGATAATTTTACAATCGGGG-TATTTCAGTAATTTCACAAAT
* * ** * *
7089237 CAAGGGTATTTTGATAATTTTACAAATTAGGGTATTTCAATAATTTTTACAAAT
1 CAGGGGTATTTCGATAATTTTAC-AATCGGGGTATTTCAGTAA-TTTCACAAAT
* * * * *
7089291 -TGGAGGTGTTTCGGTAATTTTACAAGTCGGGGTAATTC-GATAATTTCACAACT
1 CAGG-GGTATTTCGATAATTTTACAA-TCGGGGTATTTCAG-TAATTTCACAAAT
*
7089344 TAGGGGTATTT
1 CAGGGGTATTT
7089355 TACAACTGAG
Statistics
Matches: 138, Mismatches: 26, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
52 3 0.02
53 70 0.51
54 65 0.47
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (52 bp):
CAGGGGTATTTCGATAATTTTACAATCGGGGTATTTCAGTAATTTCACAAAT
Found at i:7089255 original size:80 final size:82
Alignment explanation
Indices: 7089151--7089354 Score: 265
Period size: 80 Copynumber: 2.5 Consensus size: 82
7089141 CGATAGTTTC
* *
7089151 ACAAATCAAGGGTATTTCGGTAATTTCACAAATCAGGGGTATTTCAATAA-TTTTAC-AATCGG-
1 ACAAATCAAGGGTATTTCGATAATTTCACAAATTAGGGGTATTTCAATAATTTTTACAAATCGGA
7089213 GGATATTTCAGTAATTTT
66 GG-TATTTCAGTAATTTT
* * *
7089231 ACAAATCAAGGGTATTTTGATAATTTTACAAATTA-GGGTATTTCAATAATTTTTACAAATTGGA
1 ACAAATCAAGGGTATTTCGATAATTTCACAAATTAGGGGTATTTCAATAATTTTTACAAATCGGA
* *
7089295 GGTGTTTCGGTAATTTT
66 GGTATTTCAGTAATTTT
* * * *
7089312 ACAAGTC-GGGGTAATTCGATAATTTCACAACTTAGGGGTATTT
1 ACAAATCAAGGGTATTTCGATAATTTCACAAATTAGGGGTATTT
7089355 TACAACTGAG
Statistics
Matches: 107, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
79 14 0.13
80 59 0.55
81 32 0.30
82 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (82 bp):
ACAAATCAAGGGTATTTCGATAATTTCACAAATTAGGGGTATTTCAATAATTTTTACAAATCGGA
GGTATTTCAGTAATTTT
Found at i:7091379 original size:22 final size:23
Alignment explanation
Indices: 7091345--7091406 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 23
7091335 GCAAATACAT
*
7091345 TTGGCACACAGCCATAAT-TAGG
1 TTGGCACAAAGCCATAATGTAGG
* *
7091367 TTGGTACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAATGTAGG
*
7091389 TTGGCGCAAAGCCATAAT
1 TTGGCACAAAGCCATAAT
7091407 CAGAATAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (23 bp):
TTGGCACAAAGCCATAATGTAGG
Found at i:7091611 original size:41 final size:41
Alignment explanation
Indices: 7091554--7091673 Score: 177
Period size: 41 Copynumber: 2.9 Consensus size: 41
7091544 AAGCCACCGG
* *
7091554 TGGATCCACGGTCATCAAGTAACCATGGGATCCTTAATCGA
1 TGGATCCACGGTCATCAAGTAACCATGCGATCCTCAATCGA
* *
7091595 TGGATCCACAGTCATCAAGTAACCATGCGATCCTCAATCGG
1 TGGATCCACGGTCATCAAGTAACCATGCGATCCTCAATCGA
* * *
7091636 TGGATCCACGGTTATCAAGCAACCATGCAATCCTCAAT
1 TGGATCCACGGTCATCAAGTAACCATGCGATCCTCAAT
7091674 TTCTTCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (41 bp):
TGGATCCACGGTCATCAAGTAACCATGCGATCCTCAATCGA
Found at i:7091963 original size:27 final size:27
Alignment explanation
Indices: 7091931--7092298 Score: 201
Period size: 27 Copynumber: 13.6 Consensus size: 27
7091921 TTGGTAAATC
*
7091931 TACAAACCAAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * * * * *
7091958 TGCAAACCGATGGTACTTCTATAATTTT
1 TACAAATCAAGGGTATTTCGATAA-TTT
*
7091986 TA-AAAGTCAAGGGTATTTTTG-TAATTT
1 TACAAA-TCAAGGGTA-TTTCGATAATTT
*
7092013 TATAAATCAAGGGTATTTCTG-TAATTTT
1 TACAAATCAAGGGTATTTC-GATAA-TTT
* * *
7092041 TA-AAAT-AATGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * * *
7092066 TACAAATTAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * *
7092093 TAAAAATTAAGGGTATTTCGATTATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* ** *
7092120 TACAAGTTGAGGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
** * * *
7092147 TACAGGTTAAGGATATTTCAATAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * * * * *
7092174 CATAAATTAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* *
7092201 TACAAA-CCAGAGGTATTTTGATAATTT
1 TACAAATCAAG-GGTATTTCGATAATTT
* * * *
7092228 TACAAACCATGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTT
* * * *
7092255 TGCTAATCGAGGGTATTT-TAGTAATTT
1 TACAAATCAAGGGTATTTCGA-TAATTT
** *
7092282 TGTAAACCAAGGGTATT
1 TACAAATCAAGGGTATT
7092299 AAGTAATTCT
Statistics
Matches: 268, Mismatches: 61, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
25 6 0.02
26 20 0.07
27 217 0.81
28 23 0.09
29 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCGATAATTT
Found at i:7092134 original size:54 final size:53
Alignment explanation
Indices: 7091983--7092255 Score: 228
Period size: 54 Copynumber: 5.1 Consensus size: 53
7091973 CTTCTATAAT
* * * * *
7091983 TTTTAAAAGTCAAGGGTATTTTTG-TAATTTTATAAATCAAGGGTATTTCT-GTAA
1 TTTTAAAAAT-AAGGGTA-TTTCGATAATTTTACAAATTAGGGGTATTT-TGGTAA
* * * *
7092037 TTTTTAAAATAATGGTATTTTGGTAATTTTACAAATTAGGGGTATTTTGGTAA
1 TTTTAAAAATAAGGGTATTTCGATAATTTTACAAATTAGGGGTATTTTGGTAA
* * *
7092090 TTTTAAAAATTAAGGGTATTTCGATTATTTTACAAGTT-GAGGGTATTTCGGTAA
1 TTTTAAAAA-TAAGGGTATTTCGATAATTTTACAAATTAG-GGGTATTTTGGTAA
*** * * * *
7092144 TTTTACAGGTTAAGGATATTTCAATAATTTCATAAATTAGGGGTATTTTGGTAA
1 TTTTA-AAAATAAGGGTATTTCGATAATTTTACAAATTAGGGGTATTTTGGTAA
* ** * ** *
7092198 TTTTACAAACCAGAGGTATTTTGATAATTTTACAAACCATGGGTATTTTGGTAA
1 TTTTAAAAATAAG-GGTATTTCGATAATTTTACAAATTAGGGGTATTTTGGTAA
7092252 TTTT
1 TTTT
7092256 GCTAATCGAG
Statistics
Matches: 175, Mismatches: 37, Indels: 14
0.77 0.16 0.06
Matches are distributed among these distances:
52 6 0.03
53 42 0.24
54 125 0.71
55 2 0.01
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.44
Consensus pattern (53 bp):
TTTTAAAAATAAGGGTATTTCGATAATTTTACAAATTAGGGGTATTTTGGTAA
Found at i:7092253 original size:81 final size:81
Alignment explanation
Indices: 7091994--7092282 Score: 255
Period size: 81 Copynumber: 3.6 Consensus size: 81
7091984 TTTAAAAGTC
* * *
7091994 AAGGGTATTTTTGTAATTTTATAAATCAAGGGTATTTCT-GTAATTTTTA-AAATA-ATGGTATT
1 AAGGGTATTTTGGTAATTTTATAAATTAAGGGTATTT-TGGTAA-TTTTACAAATAGAGGGTATT
7092056 TTGGTAATTTTACAAATT
64 TTGGTAATTTTACAAATT
* * * * * * * *
7092074 AGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCGATTATTTTACAAGTTGAGGGTATTTC
1 AAGGGTATTTTGGTAATTTTATAAATTAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTT
**
7092139 GGTAATTTTACAGGTT
66 GGTAATTTTACAAATT
* *** * * *
7092155 AAGGATATTTCAATAATTTCATAAATTAGGGGTATTTTGGTAATTTTACAAACCAGA-GGTATTT
1 AAGGGTATTTTGGTAATTTTATAAATTAAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTT
* **
7092219 TGATAATTTTACAAACC
65 TGGTAATTTTACAAATT
* * ** *
7092236 ATGGGTATTTTGGTAATTTTGCT-AATCGAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTGGTAATTTT-ATAAATTAAGGGTATTTTGGTAATTTT
7092283 GTAAACCAAG
Statistics
Matches: 160, Mismatches: 44, Indels: 9
0.75 0.21 0.04
Matches are distributed among these distances:
79 5 0.03
80 38 0.24
81 114 0.71
82 3 0.02
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (81 bp):
AAGGGTATTTTGGTAATTTTATAAATTAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTT
GGTAATTTTACAAATT
Found at i:7092395 original size:27 final size:27
Alignment explanation
Indices: 7092300--7092386 Score: 138
Period size: 27 Copynumber: 3.2 Consensus size: 27
7092290 AAGGGTATTA
* *
7092300 AGTAATTCTACCCTACAGGGGCATTTC
1 AGTAATTCTATCCTATAGGGGCATTTC
*
7092327 AGTAATTCTATCCTCTAGGGGCATTTC
1 AGTAATTCTATCCTATAGGGGCATTTC
*
7092354 AGTAATTCTATCCTATAGGGGTATTTC
1 AGTAATTCTATCCTATAGGGGCATTTC
7092381 AGTAAT
1 AGTAAT
7092387 ACTCGCCTAC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
AGTAATTCTATCCTATAGGGGCATTTC
Found at i:7099834 original size:42 final size:43
Alignment explanation
Indices: 7099725--7099837 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
7099715 AGTTCGTACA
* ***
7099725 ATGCCAACGTCTCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAATATCG
*
7099768 ATGCC-ACTGTCCTAGACAG-GGTCTTACACAAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACAAAATCAAATATCG
*
7099810 ATGCCAACGTCCCAGACGTAGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
7099838 TGAAAGCACA
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 32 0.54
44 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACAAAATCAAATATCG
Done.