Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 204 of 313
Found at i:62565417 original size:51 final size:50
Alignment explanation
Indices: 62565362--62565460 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 50
62565352 ATATATGTGG
*
62565362 CATCTGAGCTCGTTGAGAGGTCTGAGTTCA-TAGTGGATGTGATTCATGTAA
1 CATCTGAGCTCGTTGAGAGGTCTGAGTTCATTA-TGGATGT-ATACATGTAA
*
62565413 CATCTGAGCTCGTTGAGTGGTCTGAGTTCATTATGGATGTATACATGT
1 CATCTGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGTATACATGT
62565461 TATGAGGTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
50 7 0.16
51 36 0.80
52 2 0.04
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.35
Consensus pattern (50 bp):
CATCTGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGTATACATGTAA
Found at i:62572100 original size:21 final size:21
Alignment explanation
Indices: 62572076--62572145 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
62572066 TATATGTGAC
62572076 CTGAACTCATTGAGTTGTGGT
1 CTGAACTCATTGAGTTGTGGT
* *
62572097 CTGAGCTCA-TGATATATGTGGCAT
1 CTGAACTCATTGA-GT-TGTGG--T
*
62572121 CTGAACTCATTGAGTTATGGT
1 CTGAACTCATTGAGTTGTGGT
62572142 CTGA
1 CTGA
62572146 GTTCATGATG
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
20 3 0.08
21 14 0.36
22 5 0.13
23 4 0.10
24 10 0.26
25 3 0.08
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.36
Consensus pattern (21 bp):
CTGAACTCATTGAGTTGTGGT
Found at i:62581872 original size:51 final size:51
Alignment explanation
Indices: 62581809--62581937 Score: 168
Period size: 51 Copynumber: 2.5 Consensus size: 51
62581799 ATGATCTTGA
* * *
62581809 AAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGTAATCTTAT
1 AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAG
* * ** * *
62581860 AATATATTATTTTATAAGATTACATATCTTAGATAAGATAGGTAATCTTAG
1 AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAG
*
62581911 AAGATATGATTTTATATTCTTAGAGAT
1 AAGATATGATTTTATAATCTTAGAGAT
62581938 TTGATTGTAA
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.43
Consensus pattern (51 bp):
AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGTAATCTTAG
Found at i:62586982 original size:51 final size:51
Alignment explanation
Indices: 62586927--62587055 Score: 168
Period size: 51 Copynumber: 2.5 Consensus size: 51
62586917 ATGAACTTGA
* * *
62586927 AAGATATGATTTTATAATCTTAGAGATCTTAGATATGATATGCAATCTTAT
1 AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGCAATCTTAG
* ** * * *
62586978 AAGATATTATTTTATAAGATTACATATCTTAGATAAGATAGGTAATCTTAG
1 AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGCAATCTTAG
*
62587029 AAGATATGATTTTATATTCTTAGAGAT
1 AAGATATGATTTTATAATCTTAGAGAT
62587056 TTGATTGTAG
Statistics
Matches: 63, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.41
Consensus pattern (51 bp):
AAGATATGATTTTATAATCTTAGAGATCTTAGATAAGATAGGCAATCTTAG
Found at i:62589575 original size:48 final size:48
Alignment explanation
Indices: 62589481--62589795 Score: 214
Period size: 48 Copynumber: 6.7 Consensus size: 48
62589471 ATGGATGTGT
* ** *
62589481 GCTAGTGTAAGA-CATGT-TAGGGACAT-GCATCGGCCA-CATTATGAGA
1 GCTAGTGTAAGACCATGTCT-GGGACATGGCATCGG-CATTAAGACGAGA
*
62589527 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGA
* * * * * *
62589575 GCTAGTGTAAGA-CATGTGTGGGACAT-GCATCAGCCTCGATATATGCA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TA-AGACG-AGA
*
62589623 GCTAGTGTAAGACCATGTCTGGGACATGACATCGGCATTAAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGA
* * ** * ** *
62589671 GCTAGTGTAAGA-CATGTATGGAACAT-GCATCAACCTCGAGA-TATGCAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGA-G--A
* *
62589719 GCAAGTGTAAGACC-TGTCTGGGACATGGCATCGGC-TT--GAC-ATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGA-GA
*
62589763 G-TCAGTGTAAGACC-TGTCTAGGACATGGCATCG
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
62589796 ACACCGATAG
Statistics
Matches: 215, Mismatches: 37, Indels: 36
0.75 0.13 0.12
Matches are distributed among these distances:
44 30 0.14
45 1 0.00
46 34 0.16
47 41 0.19
48 80 0.37
49 22 0.10
50 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGA
Found at i:62589656 original size:96 final size:95
Alignment explanation
Indices: 62589481--62589753 Score: 410
Period size: 96 Copynumber: 2.9 Consensus size: 95
62589471 ATGGATGTGT
* * *
62589481 GCTAGTGTAAGACATGTTAGGGACATGCATCGGCCAC-AT-TATG-AGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTT-GGGACATGCATCAGCCTCGATATATGCA-AGCAAGTGTAAGACCAT
62589543 GTCTGGGACATGGCATCGGCATTAAGACGAGA
64 GTCTGGGACATGGCATCGGCATTAAGACGAGA
*
62589575 GCTAGTGTAAGACATGTGTGGGACATGCATCAGCCTCGATATATGCAAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACATGT-TGGGACATGCATCAGCCTCGATATATGCAAGCAAGTGTAAGACCATG
*
62589640 TCTGGGACATGACATCGGCATTAAGACGAGA
65 TCTGGGACATGGCATCGGCATTAAGACGAGA
* * *
62589671 GCTAGTGTAAGACATGTATGGAACATGCATCAACCTCGAGATATGCAAGCAAGTGTAAGACC-TG
1 GCTAGTGTAAGACATGT-TGGGACATGCATCAGCCTCGATATATGCAAGCAAGTGTAAGACCATG
62589735 TCTGGGACATGGCATCGGC
65 TCTGGGACATGGCATCGGC
62589754 TTGACATGTG
Statistics
Matches: 165, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
94 33 0.20
95 23 0.14
96 108 0.65
97 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTTGGGACATGCATCAGCCTCGATATATGCAAGCAAGTGTAAGACCATGT
CTGGGACATGGCATCGGCATTAAGACGAGA
Found at i:62591354 original size:46 final size:46
Alignment explanation
Indices: 62591264--62591379 Score: 137
Period size: 46 Copynumber: 2.5 Consensus size: 46
62591254 AAGTCAAAGC
*
62591264 CATGTCCCAGACATGGTCTTACATTGACTATCATCTCATAGCCGACG
1 CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCATAGCCGACG
* * * *
62591311 CATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGA-GGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACTAT-CATCTC-ATAGCCGACG
*
62591357 CATGTCCTAGACATGTCTTACAC
1 CATGTCCCAGACATGTCTTACAC
62591380 AGCACTTGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 1 0.02
46 45 0.74
47 15 0.25
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTATCATCTCATAGCCGACG
Found at i:62599535 original size:6 final size:6
Alignment explanation
Indices: 62599524--62599550 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
62599514 AATTAGCTAC
62599524 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
62599551 GGTAAGGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:62607776 original size:47 final size:47
Alignment explanation
Indices: 62607664--62607786 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
62607654 AGGATTCTAT
* * * * * * *
62607664 GTGATGGATGTGAACA-TGCATATATGAGATATGGCCTAATGGCCGAT
1 GTGATGGATGTGAA-AGTGTATATATGTGACAGGGCCGAATGGCCAAC
* *
62607711 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGGATGTGAAAGTGTATATATGTGACAGGGCCGAATGGCCAAC
*
62607758 GTGATGGATGTGAAAGTGTATAAATGTGA
1 GTGATGGATGTGAAAGTGTATATATGTGA
62607787 TAAGTCCCGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 1 0.02
47 63 0.98
ACGTcount: A:0.31, C:0.10, G:0.33, T:0.27
Consensus pattern (47 bp):
GTGATGGATGTGAAAGTGTATATATGTGACAGGGCCGAATGGCCAAC
Found at i:62607904 original size:27 final size:27
Alignment explanation
Indices: 62607874--62608006 Score: 88
Period size: 27 Copynumber: 5.3 Consensus size: 27
62607864 TCTAATGGCC
62607874 GATGTGATGAATGTGAAAGTGTATATA
1 GATGTGATGAATGTGAAAGTGTATATA
* ** ***
62607901 GATGTGAT-AAGGTCTAA-TG---GCC
1 GATGTGATGAATGTGAAAGTGTATATA
62607923 GATGTGATGAATGTGAAAGTGTATATA
1 GATGTGATGAATGTGAAAGTGTATATA
* ** ***
62607950 GATGTGAT-AAGGTCTAA-TG---GCC
1 GATGTGATGAATGTGAAAGTGTATATA
62607972 GATGTGATGAATGTGAAAGTGTATATA
1 GATGTGATGAATGTGAAAGTGTATATA
62607999 GATGTGAT
1 GATGTGAT
62608007 AAGGTCTAAT
Statistics
Matches: 72, Mismatches: 24, Indels: 20
0.62 0.21 0.17
Matches are distributed among these distances:
22 16 0.22
23 12 0.17
24 4 0.06
25 4 0.06
26 12 0.17
27 24 0.33
ACGTcount: A:0.33, C:0.05, G:0.31, T:0.32
Consensus pattern (27 bp):
GATGTGATGAATGTGAAAGTGTATATA
Found at i:62607924 original size:49 final size:49
Alignment explanation
Indices: 62607852--62608034 Score: 366
Period size: 49 Copynumber: 3.7 Consensus size: 49
62607842 TTTATGCGAG
62607852 GATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 GATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
62607901 GATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 GATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
62607950 GATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 GATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
62607999 GATGTGATAAGGTCTAATGGCCGATGTGATGAATGT
1 GATGTGATAAGGTCTAATGGCCGATGTGATGAATGT
62608035 CAGGGCCGAG
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 134 1.00
ACGTcount: A:0.32, C:0.07, G:0.31, T:0.31
Consensus pattern (49 bp):
GATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:62609623 original size:40 final size:40
Alignment explanation
Indices: 62609460--62609611 Score: 205
Period size: 40 Copynumber: 3.8 Consensus size: 40
62609450 GAGAATTGAG
* *
62609460 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
62609500 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
62609540 AGTGATATATCCGTGCTAAACCCCGAAGAGCGTTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
62609580 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
62609612 ATCATGCTGG
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:62609828 original size:25 final size:25
Alignment explanation
Indices: 62609787--62609838 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
62609777 TGTGTAATAA
62609787 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
62609812 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
62609837 TG
1 TG
62609839 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:62611431 original size:25 final size:24
Alignment explanation
Indices: 62611397--62611443 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
62611387 TAAAGAAATG
*
62611397 GAAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAAGA-AAAAAAAATGAT
*
62611422 GAAAACAAAAGAAAAAAAAATG
1 GAAAAAAAAAGAAAAAAAAATG
62611444 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.06
Consensus pattern (24 bp):
GAAAAAAAAAGAAAAAAAAATGAT
Found at i:62612416 original size:47 final size:47
Alignment explanation
Indices: 62612268--62612596 Score: 532
Period size: 47 Copynumber: 6.9 Consensus size: 47
62612258 NNNNNNNNNN
*
62612268 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTT
1 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
62612317 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTT
1 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
62612366 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
62612413 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
62612460 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
62612507 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCG
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * *
62612554 AGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62612597 TCCCGAAGGG
Statistics
Matches: 269, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 192 0.71
49 77 0.29
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
Found at i:62612771 original size:37 final size:37
Alignment explanation
Indices: 62612715--62612793 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
62612705 CCGAGCTCTA
* * *
62612715 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
62612752 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
62612789 AAGAC
1 AAGAC
62612794 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:62614000 original size:13 final size:13
Alignment explanation
Indices: 62613982--62614029 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
62613972 AGACACACGC
62613982 CCGTGTGCCCAGG
1 CCGTGTGCCCAGG
* *
62613995 CCGTGTGACACACGC
1 CCGTGTG-CCCA-GG
62614010 CCGTGTGCCCAGG
1 CCGTGTGCCCAGG
62614023 CCGTGTG
1 CCGTGTG
62614030 GTTCACACGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 15 0.52
14 6 0.21
15 8 0.28
ACGTcount: A:0.10, C:0.38, G:0.35, T:0.17
Consensus pattern (13 bp):
CCGTGTGCCCAGG
Found at i:62614013 original size:28 final size:28
Alignment explanation
Indices: 62613973--62614029 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
62613963 AGATGCAGGA
62613973 GACACACGCCCGTGTGCCCAGGCCGTGT
1 GACACACGCCCGTGTGCCCAGGCCGTGT
62614001 GACACACGCCCGTGTGCCCAGGCCGTGT
1 GACACACGCCCGTGTGCCCAGGCCGTGT
62614029 G
1 G
62614030 GTTCACACGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.39, G:0.33, T:0.14
Consensus pattern (28 bp):
GACACACGCCCGTGTGCCCAGGCCGTGT
Found at i:62614015 original size:15 final size:15
Alignment explanation
Indices: 62613973--62614016 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
62613963 AGATGCAGGA
62613973 GACACACGCCCGTGT
1 GACACACGCCCGTGT
* *
62613988 G-CCCA-GGCCGTGT
1 GACACACGCCCGTGT
62614001 GACACACGCCCGTGT
1 GACACACGCCCGTGT
62614016 G
1 G
62614017 CCCAGGCCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
13 8 0.35
14 6 0.26
15 9 0.39
ACGTcount: A:0.16, C:0.39, G:0.32, T:0.14
Consensus pattern (15 bp):
GACACACGCCCGTGT
Found at i:62614500 original size:32 final size:33
Alignment explanation
Indices: 62614455--62614523 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
62614445 ACTCAATTGA
* *
62614455 ACATACTCTAACATTGTATAACCTCATACATAT
1 ACATACTCAAACATAGTATAACCTCATACATAT
62614488 ACATA-TCAAACATAGTATAACCTCATACATAT
1 ACATACTCAAACATAGTATAACCTCATACATAT
62614520 ACAT
1 ACAT
62614524 TAACCATACT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 29 0.85
33 5 0.15
ACGTcount: A:0.43, C:0.23, G:0.03, T:0.30
Consensus pattern (33 bp):
ACATACTCAAACATAGTATAACCTCATACATAT
Found at i:62615134 original size:18 final size:18
Alignment explanation
Indices: 62615089--62615136 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
62615079 ATTCTTGTCG
*
62615089 AAAAATAATAAATTTTTA
1 AAAAATAATTAATTTTTA
*
62615107 CAAAATAATTAATTTTTA
1 AAAAATAATTAATTTTTA
62615125 AAAAATAATTAA
1 AAAAATAATTAA
62615137 AATGCACTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAAATAATTAATTTTTA
Found at i:62618023 original size:27 final size:26
Alignment explanation
Indices: 62617995--62618271 Score: 223
Period size: 27 Copynumber: 10.3 Consensus size: 26
62617985 ATAATTTTAT
*
62617995 AGGGTAAAATGATCGAAATACCCCCA
1 AGGGTAAAATTATCGAAATACCCCCA
* * *
62618021 TAGGGTAGAATGACCGAAATACCCCCGA
1 -AGGGTAAAATTATCGAAATACCCCC-A
* *
62618049 AGGGTAAAATTATCAAAATACCCTCGA
1 AGGGTAAAATTATCGAAATACCC-CCA
* *
62618076 AGGGTAAAATTA-CTAAAATACCCTCAA
1 AGGGTAAAATTATC-GAAATACCC-CCA
* * *
62618103 AGGGTAAAATTACCAAAATACCCCTGA
1 AGGGTAAAATTATCGAAATACCCC-CA
* * *
62618130 AAGGTAAAAGTACCGAAATACCCCCGA
1 AGGGTAAAATTATCGAAATACCCCC-A
**
62618157 AGGGTAAAATTATCGAAATACCCTTGA
1 AGGGTAAAATTATCGAAATACCC-CCA
*
62618184 AGGGTAAAATTATCGAAATACCCTCGA
1 AGGGTAAAATTATCGAAATACCC-CCA
* * * * * * *
62618211 AAGTTAAAACTACCTAAATGCCCCTGA
1 AGGGTAAAATTATCGAAATACCCC-CA
*
62618238 AGGGTAAAATTATCGAAATACCCCCG
1 AGGGTAAAATTATCGAAATACCCCCA
*
62618264 ATGGTAAA
1 AGGGTAAA
62618272 GTGATCGTAT
Statistics
Matches: 208, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
26 10 0.05
27 195 0.94
28 3 0.01
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.19
Consensus pattern (26 bp):
AGGGTAAAATTATCGAAATACCCCCA
Found at i:62618122 original size:81 final size:80
Alignment explanation
Indices: 62617995--62618260 Score: 291
Period size: 81 Copynumber: 3.3 Consensus size: 80
62617985 ATAATTTTAT
* * * * * * * *
62617995 AGGGTAAAATGATCGAAATACCCCCATAGGGTAGAATGACCGAAATACCCCCGAAGGGTAAAATT
1 AGGGTAAAATTATCAAAATACCCTCAAAGGGTAAAATTACCGAAATACCCCCGAAAGGTAAAACT
*
62618060 ATCAAAATACCCTCGA
66 ACCAAAATACCC-CGA
* * *
62618076 AGGGTAAAATTA-CTAAAATACCCTCAAAGGGTAAAATTACCAAAATACCCCTGAAAGGTAAAAG
1 AGGGTAAAATTATC-AAAATACCCTCAAAGGGTAAAATTACCGAAATACCCCCGAAAGGTAAAAC
*
62618140 TACCGAAATACCCCCGA
65 TACCAAAATA-CCCCGA
* ** * * *
62618157 AGGGTAAAATTATCGAAATACCCTTGAAGGGTAAAATTATCGAAATACCCTCGAAAGTTAAAACT
1 AGGGTAAAATTATCAAAATACCCTCAAAGGGTAAAATTACCGAAATACCCCCGAAAGGTAAAACT
* *
62618222 ACCTAAATGCCCCTGA
66 ACCAAAATACCCC-GA
*
62618238 AGGGTAAAATTATCGAAATACCC
1 AGGGTAAAATTATCAAAATACCC
62618261 CCGATGGTAA
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
80 5 0.03
81 149 0.94
82 4 0.03
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (80 bp):
AGGGTAAAATTATCAAAATACCCTCAAAGGGTAAAATTACCGAAATACCCCCGAAAGGTAAAACT
ACCAAAATACCCCGA
Found at i:62636295 original size:56 final size:56
Alignment explanation
Indices: 62636229--62636339 Score: 152
Period size: 56 Copynumber: 2.0 Consensus size: 56
62636219 GTGAGCAGCC
* * *
62636229 CAAATATCACAACTTGTGTGAG-AAAGTTCAAATATCACAGCTCATGTGAGAAAATT
1 CAAATATCACAACTAGTGTAAGCAAA-TTCAAAAATCACAGCTCATGTGAGAAAATT
* **
62636285 CAAATATCACAACTAGTGTAAGCAAATTCAAAAATTACAGCTTGTGTGAGAAAAT
1 CAAATATCACAACTAGTGTAAGCAAATTCAAAAATCACAGCTCATGTGAGAAAAT
62636340 CAGTCTCGTG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
56 45 0.94
57 3 0.06
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26
Consensus pattern (56 bp):
CAAATATCACAACTAGTGTAAGCAAATTCAAAAATCACAGCTCATGTGAGAAAATT
Found at i:62636339 original size:28 final size:28
Alignment explanation
Indices: 62636229--62636339 Score: 132
Period size: 28 Copynumber: 4.0 Consensus size: 28
62636219 GTGAGCAGCC
* *
62636229 CAAATATCACAACTTGTGTGAGAAAGTT
1 CAAATATCACAGCTTGTGTGAGAAAATT
**
62636257 CAAATATCACAGCTCATGTGAGAAAATT
1 CAAATATCACAGCTTGTGTGAGAAAATT
* * * *
62636285 CAAATATCACAACTAGTGTAAGCAAATT
1 CAAATATCACAGCTTGTGTGAGAAAATT
* *
62636313 CAAAAATTACAGCTTGTGTGAGAAAAT
1 CAAATATCACAGCTTGTGTGAGAAAAT
62636340 CAGTCTCGTG
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26
Consensus pattern (28 bp):
CAAATATCACAGCTTGTGTGAGAAAATT
Found at i:62636445 original size:14 final size:14
Alignment explanation
Indices: 62636426--62636452 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
62636416 ATATGTTCGA
62636426 AATGAATATATATG
1 AATGAATATATATG
62636440 AATGAATATATAT
1 AATGAATATATAT
62636453 TTCAAGTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (14 bp):
AATGAATATATATG
Found at i:62651980 original size:8 final size:8
Alignment explanation
Indices: 62651963--62651997 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
62651953 ATTAGACATC
62651963 AAAAAA-A
1 AAAAAACA
62651970 AAAAAACA
1 AAAAAACA
62651978 AAAAAACA
1 AAAAAACA
62651986 AAAAAACA
1 AAAAAACA
62651994 AAAA
1 AAAA
62651998 CAAAAACAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAACA
Found at i:62651981 original size:14 final size:14
Alignment explanation
Indices: 62651962--62652003 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 14
62651952 CATTAGACAT
62651962 CAAAAAAAAAAAAA
1 CAAAAAAAAAAAAA
62651976 CAAAAAAACAAAAAAA
1 C-AAAAAA-AAAAAAA
62651992 CAAAAACAAAAA
1 CAAAAA-AAAAA
62652004 CAAGATCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.04
15 15 0.60
16 9 0.36
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (14 bp):
CAAAAAAAAAAAAA
Found at i:62651987 original size:22 final size:22
Alignment explanation
Indices: 62651962--62652003 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
62651952 CATTAGACAT
62651962 CAAAAAAAAAAAAACAAAAAAA
1 CAAAAAAAAAAAAACAAAAAAA
*
62651984 CAAAAAAACAAAAACAAAAA
1 CAAAAAAAAAAAAACAAAAA
62652004 CAAGATCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (22 bp):
CAAAAAAAAAAAAACAAAAAAA
Found at i:62651988 original size:16 final size:15
Alignment explanation
Indices: 62651963--62652003 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
62651953 ATTAGACATC
62651963 AAAAAAAAAAAAACA
1 AAAAAAAAAAAAACA
62651978 AAAAAACAAAAAAACA
1 AAAAAA-AAAAAAACA
62651994 AAAACAAAAA
1 AAAA-AAAAA
62652004 CAAGATCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.25
16 16 0.67
17 2 0.08
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAACA
Found at i:62652004 original size:6 final size:6
Alignment explanation
Indices: 62651965--62652006 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
62651955 TAGACATCAA
* *
62651965 AAAAAA AAAAAC AAAAA- AACAA- AAAAAC AAAAAC AAAAAC AA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AA
62652007 GATCCTATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
5 8 0.25
6 24 0.75
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:62657792 original size:16 final size:17
Alignment explanation
Indices: 62657770--62657809 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
62657760 AAAAAATTGA
62657770 AAAAATTAAATAAA-AT
1 AAAAATTAAATAAACAT
*
62657786 TAAAATTAAATAAACAT
1 AAAAATTAAATAAACAT
62657803 AAAAATT
1 AAAAATT
62657810 CAAAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (17 bp):
AAAAATTAAATAAACAT
Found at i:62657799 original size:10 final size:9
Alignment explanation
Indices: 62657757--62657790 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
62657747 TTAAAATTTT
62657757 TTAAAAAAA
1 TTAAAAAAA
*
62657766 TTGAAAAAA
1 TTAAAAAAA
62657775 TTAAATAAAA
1 TTAAA-AAAA
62657785 TTAAAA
1 TTAAAA
62657791 TTAAATAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (9 bp):
TTAAAAAAA
Found at i:62669757 original size:5 final size:6
Alignment explanation
Indices: 62669714--62669741 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
62669704 TTTCTTCTTG
62669714 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTT
62669742 TTTTTGTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:62672366 original size:10 final size:10
Alignment explanation
Indices: 62672346--62672395 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
62672336 TTTATACATA
62672346 AATTAAATTAT
1 AATT-AATTAT
62672357 AATTAATTAT
1 AATTAATTAT
*
62672367 AAATTAA-CAT
1 -AATTAATTAT
*
62672377 AATTAACTAT
1 AATTAATTAT
62672387 AATTAATTA
1 AATTAATTA
62672396 CCTTAATTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
9 6 0.18
10 18 0.53
11 10 0.29
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (10 bp):
AATTAATTAT
Found at i:62674022 original size:190 final size:189
Alignment explanation
Indices: 62673690--62674067 Score: 639
Period size: 190 Copynumber: 2.0 Consensus size: 189
62673680 AATAATCGAA
*
62673690 TTGTCAATCTTTAAAAACACAGTAGCTTCTCACAACTGATCAAACAAGTCATCAATACGAGGTAT
1 TTGTCAATCTTTAAAAACACAGTAGCTTCTCACAACTAATCAAACAAGTCATCAATACGAGGTAT
* * *
62673755 CAAATTTTATTCTTCATGGTGACTATTATCAACTTTCTGTAGTCAATACACAATCTTAAAGTTCT
66 CAAATATTATTCTTCATGGTGACTATTATCAACTTTCTATAGTCAATACACAATCTCAAAGTTCT
* * *
62673820 TTATTTCTTTTCACTAAAAACACTAAAGCATTTCAAAGTGATGCACTCGGTTAGACAAG
131 TTATTTCTTTTCACTAAAAACACTAAAGCATTTCAAAGTGATACACTCAGTCAGACAAG
62673879 TTGTCAATCTTTTAAAAACACAGTAGCTTCTCACAACTAATCAAACAAGTCATCAATACGAGGTA
1 TTGTCAATC-TTTAAAAACACAGTAGCTTCTCACAACTAATCAAACAAGTCATCAATACGAGGTA
*
62673944 TCAAATATTATTCTTCATTGTGACTATTATCAACTTTCTATAGTCAATACACAATCTCAAAGTTC
65 TCAAATATTATTCTTCATGGTGACTATTATCAACTTTCTATAGTCAATACACAATCTCAAAGTTC
* * * *
62674009 TTTCTTTCTTTTCACTAACAACACTAGAGTATTTCAAAGTGATACACTCAGTCAGACAA
130 TTTATTTCTTTTCACTAAAAACACTAAAGCATTTCAAAGTGATACACTCAGTCAGACAA
62674068 ATCTTTAGTC
Statistics
Matches: 176, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
189 9 0.05
190 167 0.95
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.34
Consensus pattern (189 bp):
TTGTCAATCTTTAAAAACACAGTAGCTTCTCACAACTAATCAAACAAGTCATCAATACGAGGTAT
CAAATATTATTCTTCATGGTGACTATTATCAACTTTCTATAGTCAATACACAATCTCAAAGTTCT
TTATTTCTTTTCACTAAAAACACTAAAGCATTTCAAAGTGATACACTCAGTCAGACAAG
Found at i:62677762 original size:63 final size:64
Alignment explanation
Indices: 62677650--62677775 Score: 173
Period size: 63 Copynumber: 2.0 Consensus size: 64
62677640 GACACACGCC
* *
62677650 CGTGTGGTTTCTAAATCACAAACAGTGAGTTACATGACCTAGACACACGCCTGTGTCTCTGGCT
1 CGTGTGGTTTCTAAATCACAAACAGTGAGTCACACGACCTAGACACACGCCTGTGTCTCTGGCT
* * * * * *
62677714 CGTGTGGTTTCTAAATTACACA-AGTGAGTCATACGGCTTAGACTCACGCCTGTGTCTCTGGC
1 CGTGTGGTTTCTAAATCACAAACAGTGAGTCACACGACCTAGACACACGCCTGTGTCTCTGGC
62677776 CTATGTGATC
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
63 34 0.63
64 20 0.37
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (64 bp):
CGTGTGGTTTCTAAATCACAAACAGTGAGTCACACGACCTAGACACACGCCTGTGTCTCTGGCT
Found at i:62678437 original size:19 final size:18
Alignment explanation
Indices: 62678401--62678447 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 18
62678391 AACACAATCA
62678401 AAAAG-AAAAATTAAAAG
1 AAAAGAAAAAATTAAAAG
62678418 -AAAGAAAAAACTTAAAAAG
1 AAAAGAAAAAA-TT-AAAAG
62678437 AAAAGAAAAAA
1 AAAAGAAAAAA
62678448 AGGAAAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
18 2 0.08
19 5 0.19
20 10 0.38
ACGTcount: A:0.79, C:0.02, G:0.11, T:0.09
Consensus pattern (18 bp):
AAAAGAAAAAATTAAAAG
Found at i:62678454 original size:20 final size:20
Alignment explanation
Indices: 62678413--62678464 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
62678403 AAGAAAAATT
***
62678413 AAAAG-AAAGAAAAAACTTA
1 AAAAGAAAAGAAAAAAAGGA
62678432 AAAAGAAAAGAAAAAAAGGA
1 AAAAGAAAAGAAAAAAAGGA
*
62678452 AAATGGAAAAGAA
1 AAA-AGAAAAGAA
62678465 GATGGGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 5 0.19
20 14 0.52
21 8 0.30
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (20 bp):
AAAAGAAAAGAAAAAAAGGA
Found at i:62680296 original size:17 final size:17
Alignment explanation
Indices: 62680274--62680316 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
62680264 CACGCCGGTT
62680274 ACTTCTATTCAACTATA
1 ACTTCTATTCAACTATA
*
62680291 ACTTCTATTCAATTATA
1 ACTTCTATTCAACTATA
*
62680308 GCTTCTATT
1 ACTTCTATT
62680317 TTCTTGAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.02, T:0.47
Consensus pattern (17 bp):
ACTTCTATTCAACTATA
Found at i:62687209 original size:64 final size:64
Alignment explanation
Indices: 62687103--62687258 Score: 215
Period size: 64 Copynumber: 2.5 Consensus size: 64
62687093 CCCTCGCAAT
* * * *
62687103 GCCT-GACACACACCCGTGTCACTGGCCCGTATGGTTTTTAAATCACAAACAGCGAGTTACACG
1 GCCTGGACACACGCCCGTGTCTCTGGCCCGTATGGTTTCTAAATCACAAACAGCGAGTCACACG
* * * * *
62687166 GCCTGGACACACGCCCGTGTCTCTGGCCCGTATGGTTTCTAAATTACAGATAGTGAGTCACATG
1 GCCTGGACACACGCCCGTGTCTCTGGCCCGTATGGTTTCTAAATCACAAACAGCGAGTCACACG
*
62687230 GCCTGGACACACGCTCGTGTCTCTGGCCC
1 GCCTGGACACACGCCCGTGTCTCTGGCCC
62687259 ATGTGATCCT
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
63 4 0.05
64 78 0.95
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.24
Consensus pattern (64 bp):
GCCTGGACACACGCCCGTGTCTCTGGCCCGTATGGTTTCTAAATCACAAACAGCGAGTCACACG
Found at i:62689387 original size:25 final size:27
Alignment explanation
Indices: 62689335--62689388 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 27
62689325 TGATAAATTC
* *
62689335 TCATCCTTTTCATTTCATATATGCATAT
1 TCATCCTTTCCATTTCA-ATATGAATAT
62689363 TCAT-CTTTCCATTTC-ATATGAATAT
1 TCATCCTTTCCATTTCAATATGAATAT
62689388 T
1 T
62689389 AGTTACACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 10 0.42
27 10 0.42
28 4 0.17
ACGTcount: A:0.26, C:0.20, G:0.04, T:0.50
Consensus pattern (27 bp):
TCATCCTTTCCATTTCAATATGAATAT
Found at i:62693114 original size:29 final size:29
Alignment explanation
Indices: 62693081--62693178 Score: 87
Period size: 29 Copynumber: 3.3 Consensus size: 29
62693071 AAAGAGGTTA
62693081 CCACAAAGGCTTTCCTGTCAAGAGTT-TCG
1 CCACAAAGGCTTTCCTGTCAA-AGTTATCG
* *
62693110 CCACAAAGG-TTGTCCTTTTCATTCA-TTACTCG
1 CCACAAAGGCTT-TCC-TGTCA--AAGTTA-TCG
62693142 CCACAAAGGCTTTCCTGTCCAAAGTTAT-G
1 CCACAAAGGCTTTCCTGT-CAAAGTTATCG
62693171 CCACAAAG
1 CCACAAAG
62693179 ACTATCCATT
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
28 2 0.04
29 21 0.38
30 8 0.14
31 6 0.11
32 17 0.30
33 2 0.04
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (29 bp):
CCACAAAGGCTTTCCTGTCAAAGTTATCG
Found at i:62693150 original size:61 final size:59
Alignment explanation
Indices: 62693081--62693229 Score: 160
Period size: 61 Copynumber: 2.5 Consensus size: 59
62693071 AAAGAGGTTA
** * *
62693081 CCACAAAGGCTTTCCTGTCAAGAGTTTCGCCACAAAGGTTGTCC-TTTTCATTCAT-TACTCG
1 CCACAAAGGCTTTCCTGTCAAGAGTTT-GCCACAAAGACTATCCATTAT-A-T-ATGTACTCG
62693142 CCACAAAGGCTTTCCTGTCCAA-AGTTATGCCACAAAGACTATCCATTATATATGGTACTCG
1 CCACAAAGGCTTTCCTGT-CAAGAGTT-TGCCACAAAGACTATCCATTATATAT-GTACTCG
* *
62693203 ACACAAAGGCTTTCCTGTCCAGAGTTT
1 CCACAAAGGCTTTCCTGTCAAGAGTTT
62693230 TACCTAGAAG
Statistics
Matches: 76, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
59 2 0.03
60 4 0.05
61 63 0.83
62 7 0.09
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (59 bp):
CCACAAAGGCTTTCCTGTCAAGAGTTTGCCACAAAGACTATCCATTATATATGTACTCG
Found at i:62701206 original size:119 final size:119
Alignment explanation
Indices: 62700995--62701229 Score: 310
Period size: 119 Copynumber: 2.0 Consensus size: 119
62700985 AGATATCTTT
* * ** *
62700995 TTCTTAGATAGTTGTTGTAAACACTTTTTAAGTGATTGGAAGAACAAGATGTTAGAACCAATAAT
1 TTCTTAGATAGTTATTGTAAACACTTTCTAAGTGATTACAAGAACAAGATGTTAAAACCAATAAT
* * * * *
62701060 AGATTGTACAAAGGTGAGATTGCAACTTGAGAGATAGGAGTTGAGTTTAAACCA
66 AGATCGTACAAAGGTGAGACTACAACTTAAGAGATAGGAGTTGAGCTTAAACCA
* * * * *
62701114 TTCTTAGATGGTTATTGTAGACACTTTCTAAGTGATTACAAGAGCAGTGA-GTTAAAACCAATAC
1 TTCTTAGATAGTTATTGTAAACACTTTCTAAGTGATTACAAGAACA-AGATGTTAAAACCAATAA
*
62701178 TAGATCGTACAAAGGTGAGGCTACAACTTAAGAGATAGGAGTTGAGCTTAAA
65 TAGATCGTACAAAGGTGAGACTACAACTTAAGAGATAGGAGTTGAGCTTAAA
62701230 TAAATTTTCT
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
119 97 0.98
120 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (119 bp):
TTCTTAGATAGTTATTGTAAACACTTTCTAAGTGATTACAAGAACAAGATGTTAAAACCAATAAT
AGATCGTACAAAGGTGAGACTACAACTTAAGAGATAGGAGTTGAGCTTAAACCA
Found at i:62701800 original size:15 final size:15
Alignment explanation
Indices: 62701777--62701830 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
62701767 CCACCTTGAC
62701777 ACAAATTCTCAACGA
1 ACAAATTCTCAACGA
*
62701792 ACAAGTTCTTC-AC-A
1 ACAAATTC-TCAACGA
* *
62701806 ACGAACTCTCAACGA
1 ACAAATTCTCAACGA
62701821 ACAAATTCTC
1 ACAAATTCTC
62701831 TACCTCTTCC
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
13 2 0.07
14 8 0.27
15 18 0.60
16 2 0.07
ACGTcount: A:0.41, C:0.30, G:0.07, T:0.22
Consensus pattern (15 bp):
ACAAATTCTCAACGA
Found at i:62707098 original size:20 final size:20
Alignment explanation
Indices: 62706998--62707098 Score: 51
Period size: 20 Copynumber: 5.0 Consensus size: 20
62706988 GTATATGCAT
62706998 TTAGGGGTACCAAAGTACAA
1 TTAGGGGTACCAAAGTACAA
* * ** * *
62707018 ATAGGGGCACGTATGTGC-A
1 TTAGGGGTACCAAAGTACAA
* *
62707037 TTCAAGGGTACCGAAGTACAA
1 TT-AGGGGTACCAAAGTACAA
* ** ** * *
62707058 TCAGGGACACGTATGTGCAA
1 TTAGGGGTACCAAAGTACAA
62707078 TTAGGGGTACCAAAGTACAA
1 TTAGGGGTACCAAAGTACAA
62707098 T
1 T
62707099 CAAGGACACG
Statistics
Matches: 51, Mismatches: 28, Indels: 4
0.61 0.34 0.05
Matches are distributed among these distances:
19 2 0.04
20 47 0.92
21 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.21
Consensus pattern (20 bp):
TTAGGGGTACCAAAGTACAA
Found at i:62707098 original size:40 final size:40
Alignment explanation
Indices: 62706972--62707114 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 40
62706962 AGTTACTGAG
* * * *
62706972 GTACAAACAGGGGCACGTATATGCATTTAGGGGTACCAAA
1 GTACAATCAGGGACACGTATGTGCAATTAGGGGTACCAAA
* * *
62707012 GTACAAAT-AGGGGCACGTATGTGC-ATTCAAGGGTACCGAA
1 GTAC-AATCAGGGACACGTATGTGCAATT-AGGGGTACCAAA
62707052 GTACAATCAGGGACACGTATGTGCAATTAGGGGTACCAAA
1 GTACAATCAGGGACACGTATGTGCAATTAGGGGTACCAAA
* *
62707092 GTACAATCAAGGACACGTGTGTG
1 GTACAATCAGGGACACGTATGTG
62707115 TGTATTCAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
39 5 0.06
40 79 0.89
41 5 0.06
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (40 bp):
GTACAATCAGGGACACGTATGTGCAATTAGGGGTACCAAA
Found at i:62721363 original size:39 final size:39
Alignment explanation
Indices: 62721303--62722262 Score: 1768
Period size: 39 Copynumber: 24.6 Consensus size: 39
62721293 GTGACCATAT
*
62721303 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGACTAAGATCCGAAGGCA-TTGTGCGAGTTACTATA-A
* *
62721343 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGACTAAGATCCGAAGGCATT-GTGCGAGTTACTATAA
**
62721381 TCCGGGTTAAG-TCCCGAAGGCATTGTGCGAGTTACTATAA
1 -CCGGACTAAGAT-CCGAAGGCATTGTGCGAGTTACTATAA
62721421 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721460 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721499 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721538 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721577 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721616 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721655 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721694 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721733 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721772 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721811 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721850 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721889 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721928 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62721967 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62722006 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62722045 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62722084 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62722123 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62722162 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
62722201 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
1 CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
* *
62722240 CCGGGCTATG-TCCCGAAGGCATT
1 CCGGACTAAGAT-CCGAAGGCATT
62722263 TGAACGAGTA
Statistics
Matches: 905, Mismatches: 9, Indels: 13
0.98 0.01 0.01
Matches are distributed among these distances:
38 3 0.00
39 879 0.97
40 23 0.03
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (39 bp):
CCGGACTAAGATCCGAAGGCATTGTGCGAGTTACTATAA
Found at i:62732285 original size:23 final size:22
Alignment explanation
Indices: 62732211--62732302 Score: 100
Period size: 22 Copynumber: 4.2 Consensus size: 22
62732201 AAATTCAATA
* * *
62732211 TCAATTTCTTTCAAAAATTCTC
1 TCAATTCCCTTCAAAATTTCTC
62732233 TCAA-TCCCTTTCAAAATTTCTC
1 TCAATTCCC-TTCAAAATTTCTC
62732255 TCAATTCCCTTCAAAATTTC-C
1 TCAATTCCCTTCAAAATTTCTC
*
62732276 ATCAATTTCCTTCCAAAA-TTCTC
1 -TCAATTCCCTT-CAAAATTTCTC
62732299 TCAA
1 TCAA
62732303 ACTCTCAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
21 3 0.05
22 48 0.79
23 10 0.16
ACGTcount: A:0.30, C:0.29, G:0.00, T:0.40
Consensus pattern (22 bp):
TCAATTCCCTTCAAAATTTCTC
Found at i:62732318 original size:52 final size:51
Alignment explanation
Indices: 62732252--62732354 Score: 122
Period size: 52 Copynumber: 2.0 Consensus size: 51
62732242 TTCAAAATTT
* *
62732252 CTCTCAATTCCCTT-CAAAATTTCC-ATCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAATTCCCTTCCAAAA--TCCTATCAATTTCCTTCAAAAAATCTC-CAAA
*
62732304 CTCTCAAATT-CCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTC-AATTCCCTTCCAAAATCCTATCAATTTCCTTCAAAAAATCTCCAAA
62732355 TCCATATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
51 7 0.16
52 29 0.64
53 9 0.20
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.34
Consensus pattern (51 bp):
CTCTCAATTCCCTTCCAAAATCCTATCAATTTCCTTCAAAAAATCTCCAAA
Found at i:62732343 original size:21 final size:22
Alignment explanation
Indices: 62732304--62732345 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
62732294 TTCTCTCAAA
62732304 CTCTCAAATTCCTTCCAAAATC
1 CTCTCAAATTCCTTCCAAAATC
* *
62732326 CTCTCAATTTCCTTCAAAAA
1 CTCTCAAATTCCTTCCAAAA
62732346 ATCTCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
CTCTCAAATTCCTTCCAAAATC
Found at i:62732410 original size:26 final size:27
Alignment explanation
Indices: 62732380--62732438 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
62732370 TTTTTCCATT
62732380 AAATTTCAT-TTTTTTAAGA-AAATTTA
1 AAATTTCATATTTTTTAA-ATAAATTTA
** *
62732406 AAATTTTTTATTTTTTAAATAATTTTA
1 AAATTTCATATTTTTTAAATAAATTTA
62732433 AAATTT
1 AAATTT
62732439 TTAATATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (27 bp):
AAATTTCATATTTTTTAAATAAATTTA
Found at i:62732441 original size:26 final size:27
Alignment explanation
Indices: 62732389--62732440 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
62732379 TAAATTTCAT
62732389 TTTTTTAAGAAAATTTAAAATTTTTTA
1 TTTTTTAAGAAAATTTAAAATTTTTTA
*
62732416 TTTTTTAA-ATAATTTTAAAATTTTT
1 TTTTTTAAGA-AAATTTAAAATTTTT
62732441 AATATTTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (27 bp):
TTTTTTAAGAAAATTTAAAATTTTTTA
Found at i:62732594 original size:24 final size:23
Alignment explanation
Indices: 62732532--62732594 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 23
62732522 TAAATTTAAA
*
62732532 TTTTAAAT-TTTTTTTAAGATAT
1 TTTTATATATTTTTTTAAGATAT
*
62732554 TTTTATTTATGTATTTTT-AGATAT
1 TTTTATATAT-T-TTTTTAAGATAT
62732578 TTATTAATATATTTTTT
1 TT-TT-ATATATTTTTT
62732595 GTTATAAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 6 0.18
23 1 0.03
24 13 0.39
25 8 0.24
26 5 0.15
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (23 bp):
TTTTATATATTTTTTTAAGATAT
Found at i:62734747 original size:17 final size:18
Alignment explanation
Indices: 62734725--62734760 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
62734715 TAAAATCCCT
62734725 AAACCCT-ACTTAATTAA
1 AAACCCTAACTTAATTAA
*
62734742 AAACCCTAATTTAATTAA
1 AAACCCTAACTTAATTAA
62734760 A
1 A
62734761 TTAAAAACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (18 bp):
AAACCCTAACTTAATTAA
Found at i:62734790 original size:23 final size:24
Alignment explanation
Indices: 62734713--62734802 Score: 105
Period size: 24 Copynumber: 3.8 Consensus size: 24
62734703 ACATCATTTG
*
62734713 ATTAAAATCCCTAAACCCTACTTA
1 ATTAAAAACCCTAAACCCTACTTA
** *
62734737 ATTAAAAACCCT-AA-TTTAATTAA
1 ATTAAAAACCCTAAACCCTACTT-A
62734760 ATTAAAAACCCTAAACCCTACTTA
1 ATTAAAAACCCTAAACCCTACTTA
*
62734784 ATTAAAAACTCT-AACCCTA
1 ATTAAAAACCCTAAACCCTA
62734803 ACCTAATTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
22 4 0.07
23 22 0.40
24 25 0.45
25 4 0.07
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTAAAAACCCTAAACCCTACTTA
Found at i:62734863 original size:61 final size:61
Alignment explanation
Indices: 62734746--62736028 Score: 1857
Period size: 61 Copynumber: 22.0 Consensus size: 61
62734736 AATTAAAAAC
* * *
62734746 CCTAATTTAATTAAATTAAAAACCCTAA---ACCCT-ACTTAATTAAAAACTCTAACCCTAA
1 CCTAATTTAATTAAATT-AAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62734804 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62734865 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62734926 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62734987 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735048 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735109 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735170 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735231 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735292 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735353 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735414 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735475 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735536 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735597 CCTAATTTAATTAAATTAAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAA-CCT-A
1 CCTAATTTAATTAAATT-AAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
* *
62735657 -C---TTAAATT--A--AAAACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
** * *
62735710 CCTAACCTAATTTAATTAAAA----ACCCTAACCTAATTTAATT--AAA----AACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
62735761 CCTAATTTAATT--A--AAAACCCTAA-C----CTAATTTAATT--AAA----AACCCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
* *
62735807 CCTAATTTAATT--A--AAAACCCTAACCCTAA-TTAATTAAATTAAAAACCCTAA-CCT-A
1 CCTAATTTAATTAAATTAAAACCCTAA-CCTAACCTAATTTAATTAAAAACCCTAACCCTAA
* * *
62735862 -C---TTAAATT--A--AAAACCCTAACCCCT-ACTTAATTAAATTAAAAACCCTAAACCCT-A
1 CCTAATTTAATTAAATTAAAACCCTAA--CCTAACCTAATTTAATTAAAAACCCT-AACCCTAA
* **** ** *
62735916 CTTAA-TTAA--AAACCCTAACCCTAACCTAATTTAATTAAATTAAAAACCCTAA-CCTAA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
*
62735973 CCTAATTTAATT--A--AAAACCCTAACCTAACCTAATTAAATTAAAAACCCTAACCCTA
1 CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTA
62736029 TTTAATTAAA
Statistics
Matches: 1151, Mismatches: 26, Indels: 97
0.90 0.02 0.08
Matches are distributed among these distances:
46 45 0.04
47 4 0.00
48 1 0.00
49 1 0.00
50 1 0.00
51 83 0.07
52 27 0.02
53 6 0.01
54 7 0.01
55 4 0.00
56 46 0.04
57 51 0.04
58 43 0.04
59 10 0.01
60 5 0.00
61 779 0.68
62 38 0.03
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (61 bp):
CCTAATTTAATTAAATTAAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCCTAA
Found at i:62735589 original size:23 final size:24
Alignment explanation
Indices: 62735563--62736046 Score: 270
Period size: 23 Copynumber: 18.2 Consensus size: 24
62735553 AAAACCCTAA
62735563 CCTAACCTAA-TTTAATTAAAAAC
1 CCTAACCTAACTTTAATTAAAAAC
62735586 CCTAACCCTAACCTAATTTAATTAAATTAAAAAC
1 CCTAA-CCTAA-C---TTTAATT-----AAAAAC
62735620 CCTAACCTAACCTAATTTAATTAAAAAC
1 CCTAACCTAA-C---TTTAATTAAAAAC
*
62735648 CCTAACCT-ACTTAAATTAAAAAC
1 CCTAACCTAACTTTAATTAAAAAC
62735671 CCTAACCTAACCTAATTAAATTAAAAAC
1 CCTAACCTAA-CT--TT-AATTAAAAAC
* *
62735699 CCTAACCCTAACCTAACCTAATTTAATTAAAAA
1 CCTAA-CCTAA-CT---TTAA-TT-A--AAAAC
** * ** *
62735732 CCCTAACCTAATTTAATTAAAAAC
1 CCTAACCTAACTTTAATTAAAAAC
62735756 CCTAACCTAA-TTTAATTAAAAAC
1 CCTAACCTAACTTTAATTAAAAAC
62735779 CCTAACCTAA-TTTAATTAAAAAC
1 CCTAACCTAACTTTAATTAAAAAC
62735802 CCTAACCTAA-TTTAATTAAAAAC
1 CCTAACCTAACTTTAATTAAAAAC
*
62735825 CCTAACCCTAATTAATTAAATTAAAAAC
1 CCTAA-CCTAACT--TT-AATTAAAAAC
*
62735853 CCTAACCT-ACTTAAATTAAAAAC
1 CCTAACCTAACTTTAATTAAAAAC
62735876 CCTAACCCCT-ACTTAATTAAATTAAAAAC
1 CCTAA--CCTAAC-T--TT-AATTAAAAAC
62735905 CCTAAACCCT-AC-TTAATTAAAAAC
1 CCT-AA-CCTAACTTTAATTAAAAAC
62735929 CCTAACCCTAACCTAATTTAATTAAATTAAAAAC
1 CCTAA-CCTAA-C---TTTAATT-----AAAAAC
62735963 CCTAACCTAACCTAATTTAATTAAAAAC
1 CCTAACCTAA-C---TTTAATTAAAAAC
62735991 CCTAACCTAACCTAATTAAATTAAAAAC
1 CCTAACCTAA-CT--TT-AATTAAAAAC
62736019 CCTAACCCT-A-TTTAATTAAAAAC
1 CCTAA-CCTAACTTTAATTAAAAAC
62736042 CCTAA
1 CCTAA
62736047 TTAAATTGTA
Statistics
Matches: 391, Mismatches: 21, Indels: 98
0.77 0.04 0.19
Matches are distributed among these distances:
23 125 0.32
24 37 0.09
25 12 0.03
26 6 0.02
27 11 0.03
28 82 0.21
29 45 0.12
30 6 0.02
31 2 0.01
32 2 0.01
33 41 0.10
34 22 0.06
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (24 bp):
CCTAACCTAACTTTAATTAAAAAC
Found at i:62735711 original size:34 final size:34
Alignment explanation
Indices: 62735668--62735739 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
62735658 TTAAATTAAA
62735668 AACCCTAACCTAACCTAATTAAATTAAAAACCCT
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCT
*
62735702 AACCCTAACCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAACCTAATTAAATTAAAAACCCT
62735736 AACC
1 AACC
62735740 TAATTTAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.24
Consensus pattern (34 bp):
AACCCTAACCTAACCTAATTAAATTAAAAACCCT
Found at i:62735977 original size:33 final size:33
Alignment explanation
Indices: 62735919--62736015 Score: 141
Period size: 28 Copynumber: 3.1 Consensus size: 33
62735909 AACCCTACTT
62735919 AATTAAAAACCCTAACCCTAACCTAATTTAATTA
1 AATTAAAAACCCTAA-CCTAACCTAATTTAATTA
62735953 AATTAAAAACCCTAACCTAACCTAA--T--TT-
1 AATTAAAAACCCTAACCTAACCTAATTTAATTA
*
62735981 AATTAAAAACCCTAACCTAACCTAATTAAATTA
1 AATTAAAAACCCTAACCTAACCTAATTTAATTA
62736014 AA
1 AA
62736016 AACCCTAACC
Statistics
Matches: 57, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
28 25 0.44
29 2 0.04
31 1 0.02
32 2 0.04
33 12 0.21
34 15 0.26
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (33 bp):
AATTAAAAACCCTAACCTAACCTAATTTAATTA
Found at i:62739431 original size:124 final size:124
Alignment explanation
Indices: 62739211--62739465 Score: 361
Period size: 124 Copynumber: 2.1 Consensus size: 124
62739201 CCACGAGGGC
* *
62739211 GCGATTTGAGACTGTTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
1 GCGATTTGAGACTATTTCCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
* * * * **
62739276 AAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTGGTATCA
66 AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
* *
62739335 GCGATTTTATACTATTTCCTCAGAAAACGTCAAAAAAAATTATTT-CTCACATGACC-ACTGTAG
1 GCGATTTGAGACTATTTCCTCAG-AAACGTCAAAAAAAATTATTTCCT-ACATGACCAACTGTAG
* * *
62739398 CGAAATCGCGTCCACGATGCCACTATTTCACAATTTCTTCTTAAATAGCATCCTAGTAGAA
64 CGAAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
62739459 GCGATTT
1 GCGATTT
62739466 CTCACTATTT
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
124 87 0.75
125 29 0.25
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (124 bp):
GCGATTTGAGACTATTTCCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTTCTCAAATAGCATCCTAGTAGAA
Found at i:62740450 original size:11 final size:11
Alignment explanation
Indices: 62740420--62740452 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
62740410 AATTGTTTTA
62740420 TTTTATTATTT
1 TTTTATTATTT
*
62740431 CTTTA-TATTT
1 TTTTATTATTT
62740441 TTTTATTATTT
1 TTTTATTATTT
62740452 T
1 T
62740453 ACCTTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTATTATTT
Found at i:62746569 original size:27 final size:28
Alignment explanation
Indices: 62746539--62746592 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
62746529 TCCAACAAGC
**
62746539 TTAAAACATA-ATCAGTATCTAACAAAT
1 TTAAAACATATATCAAAATCTAACAAAT
*
62746566 TTAAGACATATATCAAAATCTAACAAA
1 TTAAAACATATATCAAAATCTAACAAA
62746593 CTAAAATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.54, C:0.15, G:0.04, T:0.28
Consensus pattern (28 bp):
TTAAAACATATATCAAAATCTAACAAAT
Found at i:62747929 original size:24 final size:24
Alignment explanation
Indices: 62747897--62747944 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
62747887 GGCAATGGTC
62747897 AACATTGCCCTTGTATTATATGTT
1 AACATTGCCCTTGTATTATATGTT
62747921 AACATTGCCCTTGTATTATATGTT
1 AACATTGCCCTTGTATTATATGTT
62747945 TTATAATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (24 bp):
AACATTGCCCTTGTATTATATGTT
Found at i:62750830 original size:18 final size:18
Alignment explanation
Indices: 62750809--62750843 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
62750799 CTGGGGTAGG
62750809 TTTGGG-TTTAAGTTTGGT
1 TTTGGGCTTT-AGTTTGGT
62750827 TTTGGGCTTTAGTTTGG
1 TTTGGGCTTTAGTTTGG
62750844 GTACTAGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.09, C:0.03, G:0.34, T:0.54
Consensus pattern (18 bp):
TTTGGGCTTTAGTTTGGT
Found at i:62752590 original size:41 final size:41
Alignment explanation
Indices: 62752545--62752670 Score: 114
Period size: 41 Copynumber: 3.1 Consensus size: 41
62752535 TTTATTATCA
* * *
62752545 GTGAAATAAT-TCAGACTTTATGTCTAGCAGGCTTGATGCCG
1 GTGAAATAATGT-AGACTATAAGTCTAGCAGGCTTAATGCCG
*
62752586 GTGAAATTATGTAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGAAATAATGTAGACTATAAGTCTAGCAGGCTTAATGCCG
* * * * * *
62752627 ATG--ATACATTTCGGACAATAAGTCTAGCAGGCTAAAAGCCG
1 GTGAAATA-ATGT-AGACTATAAGTCTAGCAGGCTTAATGCCG
62752668 GTG
1 GTG
62752671 TACCGATTCA
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
39 2 0.03
40 3 0.04
41 64 0.91
42 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (41 bp):
GTGAAATAATGTAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:62752962 original size:32 final size:31
Alignment explanation
Indices: 62752904--62752968 Score: 85
Period size: 32 Copynumber: 2.1 Consensus size: 31
62752894 CAATTATTAA
* * * *
62752904 ATATATATATATATGTGCATTCGGTATATGC
1 ATATATAAATATATATGCAATAGGTATATGC
62752935 ATATATTAAATATATATGCAATAGGTATATGC
1 ATATA-TAAATATATATGCAATAGGTATATGC
62752967 AT
1 AT
62752969 TTGCTAAGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
31 5 0.17
32 24 0.83
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (31 bp):
ATATATAAATATATATGCAATAGGTATATGC
Found at i:62754093 original size:15 final size:17
Alignment explanation
Indices: 62754073--62754112 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
62754063 CGATCCATCT
62754073 ACACAAAATA-ATG-TC
1 ACACAAAATATATGATC
62754088 ACAC-AAATATATGATC
1 ACACAAAATATATGATC
62754104 ACTACAAAA
1 AC-ACAAAA
62754113 AAGATGCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.24
15 7 0.33
16 4 0.19
17 2 0.10
18 3 0.14
ACGTcount: A:0.55, C:0.20, G:0.05, T:0.20
Consensus pattern (17 bp):
ACACAAAATATATGATC
Found at i:62754571 original size:132 final size:132
Alignment explanation
Indices: 62754332--62754699 Score: 499
Period size: 132 Copynumber: 2.8 Consensus size: 132
62754322 AATCGAATCT
** *
62754332 CCCTAAGCAGTAGTAGAGTCGGTTGAAGATT-ACAGATTCTGTCACCCTAAATAGTAGTGGGGCA
1 CCCTAAGCAGTAGTAGAGTCGGTTGAAGATTGA-AGATTCTGTCACCCTAAGCAGTAGTGGAGCA
* * *
62754396 GATCGAATAT-GATGAATCTTACCTTCCCAATACAGTGGCGAAGCAGATTTAAGCCATTAGTCCT
65 GATCGAAGATGGA-GAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCT
62754460 ATCA
129 ATCA
* * *
62754464 CCCTAAGCAGTAGTTGAGTAGGTTGAAGATTGAAGATTCTGTCACCCTAAGCGGTAGTGGAGCAG
1 CCCTAAGCAGTAGTAGAGTCGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTAGTGGAGCAG
* **
62754529 ATCGAAGATGGAGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAGGGTATTAGTCCTAT
66 ATCGAAGATGGAGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTAT
62754594 CA
131 CA
* * * * * * *
62754596 CCGTAAGCAGTACTGGAGTCGGTTGAAGAGTGCAGATTCTGTCACCCTAAGCAGAAAT-GATGCA
1 CCCTAAGCAGTAGTAGAGTCGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTAGTGGA-GCA
* *
62754660 GATCGAAGATGGTGAATCTTGTCTTCCCAATACAGTGGAG
65 GATCGAAGATGGAGAATCTTATCTTCCCAATACAGTGGAG
62754700 CTATCACCCT
Statistics
Matches: 210, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
131 2 0.01
132 205 0.98
133 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
CCCTAAGCAGTAGTAGAGTCGGTTGAAGATTGAAGATTCTGTCACCCTAAGCAGTAGTGGAGCAG
ATCGAAGATGGAGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTAT
CA
Found at i:62754783 original size:110 final size:110
Alignment explanation
Indices: 62754590--62754807 Score: 328
Period size: 110 Copynumber: 2.0 Consensus size: 110
62754580 GGTATTAGTC
* * *
62754590 CTATCACCGTAAGCAGTACTGGAGTCGGTTGAAGAGTGCAGATTCTGTCACCCTAAGCAGAAATG
1 CTATCACCCTAAGCAGTACTAGAGTCGGTTGAAGAGTGCAGATTCTGTCACCCTAAGCAGAAATA
*
62754655 ATGCAGATCGAAGATGGTGAATCTTGTCTTCCCAATACAGTGGAG
66 ATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
* * * * * * *
62754700 CTATCACCCTAAGCAGTAGTAGAGTTGGTTGAAGATTGCAGATTCTGTCACCCTATGTAGTAGTA
1 CTATCACCCTAAGCAGTACTAGAGTCGGTTGAAGAGTGCAGATTCTGTCACCCTAAGCAGAAATA
*
62754765 ATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATGCAGTGG
66 ATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGG
62754808 CGATGTAACA
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
110 96 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (110 bp):
CTATCACCCTAAGCAGTACTAGAGTCGGTTGAAGAGTGCAGATTCTGTCACCCTAAGCAGAAATA
ATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAG
Found at i:62758154 original size:44 final size:44
Alignment explanation
Indices: 62757947--62758155 Score: 146
Period size: 44 Copynumber: 4.8 Consensus size: 44
62757937 ATTAGTCCTA
* * * *
62757947 TCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGATTCTG
1 TCACCCTAACCAGTAGTGGAGCAGATTGAAGATTGCAGATTCTG
* * * *
62757991 TCACCCTAACCAGTAGTGGAGCAGATCGAAGATAG-AGAATCTTA
1 TCACCCTAACCAGTAGTGGAGCAGATTGAAGATTGCAGATTC-TG
* * * * *
62758035 TCTTCCC-AA-TA-TAGTGGAGAAGCAGATTTAAGCCAGT-C-G-TCCTG
1 TC-ACCCTAACCAGTAGT-G-G-AGCAGATTGAAG--ATTGCAGATTCTG
*
62758079 TCACCCTAACCAGTAGTGGAGTC-GGTTGAAGATTGCAGATTCTG
1 TCACCCTAACCAGTAGTGGAG-CAGATTGAAGATTGCAGATTCTG
* *
62758123 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 TCACCCTAACCAGTAGTGGAGCAGATTGAAGAT
62758156 GGTGAATCTT
Statistics
Matches: 123, Mismatches: 26, Indels: 32
0.68 0.14 0.18
Matches are distributed among these distances:
41 2 0.02
42 5 0.04
43 20 0.16
44 74 0.60
45 16 0.13
46 5 0.04
47 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24
Consensus pattern (44 bp):
TCACCCTAACCAGTAGTGGAGCAGATTGAAGATTGCAGATTCTG
Found at i:62758669 original size:44 final size:44
Alignment explanation
Indices: 62758469--62759059 Score: 195
Period size: 44 Copynumber: 13.4 Consensus size: 44
62758459 AAGCCATTAG
* *
62758469 TTCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAGGATTGCAGA
1 TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
* * * **
62758513 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGA
1 TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
* ** * * * *
62758556 ATCTTATCTTTCC-AATACAGT-GTAGAATCAGATTTAAGTCATT--AG-
1 TTC-TATC-ACCCTAA-GCAGTAGTGGAGT-AGATTGAAG--ATTGCAGA
* * * *
62758601 TCCTATCACCCTATGGAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
* * * * **
62758645 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATA-TGGTGA
1 TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
* ** * * * * * **
62758688 ATCTTATCGTCCTAATACAGTGGAGAAGGAGATTTCAGCCATT--AG-
1 TTC-TATCACCCTAA-GCAGTAGTGGAGTAGATTGAAG--ATTGCAGA
* *
62758733 TCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
* * * **
62758777 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGGTGA
1 TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
* * * * * *
62758820 ATCTTATCTTCCC-AATACAGT-G-GAGAATCAGATTTAAACCATT--AG-
1 TTC-TATC-ACCCTAA-GCAGTAGTG-GAGT-AGA-TTGAA-GATTGCAGA
* * * *
62758865 TCCTATCACCCTAAGAAGTAGTGGAGTAGGTTGAAGATTGAAGA
1 TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
* * * * * **
62758909 TTCTGTCACCCTAAGTAATAGTGGAGAAGATCGAAGA-TGGTGA
1 TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
* ** * * * *
62758952 ATCTTATCTTCCAAATACAGT-G-GAGATTCAGATTTAAGCCATT----A
1 TTC-TATCACCCTAA-GCAGTAGTG-GAGT-AGATTGAAG--ATTGCAGA
*
62758996 TTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 TT-CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
*
62759041 TTCTGTCACCCTAAGCAGT
1 TTCTATCACCCTAAGCAGT
62759060 CGTCTAGCGA
Statistics
Matches: 378, Mismatches: 121, Indels: 96
0.64 0.20 0.16
Matches are distributed among these distances:
41 12 0.03
42 4 0.01
43 77 0.20
44 217 0.57
45 54 0.14
46 6 0.02
47 4 0.01
48 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
TTCTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGATTGCAGA
Found at i:62761230 original size:132 final size:132
Alignment explanation
Indices: 62757921--62761208 Score: 4421
Period size: 132 Copynumber: 24.9 Consensus size: 132
62757911 TGTCACAGGC
* * *
62757921 GAAGCAAATTTAAGTCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTACAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * *
62757986 TTCTGTCACCCTAACCAGTAGTGGAGCAGATCGAAGATAGAGAATCTTATCTTCCCAATATAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62758051 GA
131 GA
* * * * *
62758053 GAAGCAGATTTAAGCCAGTCGTCCTGTCACCCTAACCAGTAGTGGAGTCGGTTGAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
** *
62758118 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAGCACAATG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
*
62758183 TA
131 GA
* * *
62758185 GAAGTAGATTTAAGCCATTAGTCCTATCACCCTAAGTAGTAGT-GAGTAGGTTGAAGATTGTAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * *
62758249 TTCTGTCACCCTAAGCAGTAGTGGAGCGGATCGAACATGGTGAAACTTATCTTCTCAAAATAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62758314 GA
131 GA
* * * * *** * ** **
62758316 GAAGAAGATTTAAGCTATTAGTTCAATCTTTCTAAGCAGCAGTGGAGCCGGTTGAAGATTATAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * * * *
62758381 TGCTGTCACCCTAAACAGTAGTGGAGGAGATCGAATATGATGAATCTTACCTTCCGAATACACTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62758446 GA
131 GA
* *
62758448 GAAGCAGATTTAAGCCATTAGTTCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAGGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
*
62758513 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
*
62758578 TA
131 GA
* * * *
62758580 GAATCAGATTTAAGTCATTAGTCCTATCACCCTATGGAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * *
62758645 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATGGTGAATCTTATCGTCCTAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62758710 GA
131 GA
* *
62758712 GAAGGAGATTTCAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
62758777 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62758842 GA
131 GA
* * * *
62758844 GAATCAGATTTAAACCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTAGGTTGAAGATTGAAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * *
62758909 TTCTGTCACCCTAAGTAATAGTGGAGAAGATCGAAGATGGTGAATCTTATCTTCCAAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62758974 GA
131 GA
** *
62758976 GATTCAGATTTAAGCCATTATTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* ** * * * * *
62759041 TTCTGTCACCCTAAGCAGTCGTCTAGC-GATCCAAGATGCTGAATCTTATCTTCTCAAGATAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62759105 GA
131 GA
* * *
62759107 GAAGCAGATTTAAGCTATTAGTCC-ATTCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGAAG
1 GAAGCAGATTTAAGCCATTAGTCCTA-TCACCCTAAGCAGTAGTGGAGTA----G--G-TTGAAG
* * * * *
62759171 ATTGAAGATTTTGTCACCCTAAGTAGTAGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCAA
58 ATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCA
62759236 ATACAGTGGA
123 ATACAGTGGA
* *
62759246 GAAGCAGATATAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGGTTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * *
62759311 TTCTGTCACCCTAAGCAGTCGTGGAGCGGATCGAAGATGGTGAATCTTATCTTCTCAAGATAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62759376 GA
131 GA
* * *
62759378 GAAGCAGATTTAACCCATTAGT-CTAATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
1 GAAGCAGATTTAAGCCATTAGTCCT-ATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* * *
62759442 ATTCTGTCACCCTAAGCAGCAGTGGAGTAGATTGAAGATGGTGAATCTTATCTTCCCAATACAGT
65 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT
62759507 GGA
130 GGA
* *
62759510 GAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * *
62759575 TTTTGTCACCCTAAACAATAGTGGAGCATATCGAATATGATGAATCTTATCTTCCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62759640 GA
131 GA
* * * *
62759642 GAATCAGATTTAAGTCATTAGTCCTATCACTCTAAGCAGTAGTGGAGTAGGTTGAAGGTTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * *
62759707 TTCTGTCACCCTAAGTAGTAGTGGAGTAGATCGAAAATGGTGAATCTTATCTTTCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62759772 GA
131 GA
* * * *
62759774 GAAGCATATTTAAGCCATTAGTCCTATCTCCCTAAGCTGTAGTGGAGTAGGTTAAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * *** * * * *
62759839 TTTTGTCACCTTATGTCA-CCCT-AAGCAG-TAG-ACATGGTGAATCTTATCTTCCCAATACCGT
66 TTCTGTCACCCTAAG-CAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT
62759900 GGA
130 GGA
* * * * *
62759903 AAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCTGTAGTGGAGTAGGTTAAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * * *
62759968 TTTTGTCACCTTAAACAGTAGTGGAGCGGATCGAATATGATGAATCTTATCTTCCCAATATAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62760033 GA
131 GA
* * * *
62760035 GAATCAGATTTAAGTCATTAGTTCTATCACCCTAACCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* *
62760100 TTATGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62760165 GA
131 GA
* * * * *
62760167 GAAGCATATTTAAGCCATTAGTCCAATCTCCCTAAGCAGTAGTGGAGTCGGTTGAAGATTACAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * * * *
62760232 TTCTGTCACTCTAAACAGTAGTGGAGCAAAACGAATATGATGAAACTTACCTTCCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62760297 GA
131 GA
*
62760299 GAAGCAGATTTAAGCCATTAG-CTCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTTC-
1 GAAGCAGATTTAAGCCATTAGTC-CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGA-TTGCA
* * * *
62760362 GATTCGGTCACCCCAAGCAGAAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATATA
64 GATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
62760426 GTGGA
128 GTGGA
* * * *
62760431 AAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * *
62760496 TTTTGTCACCTTAAACAGTAGTGGAGCGGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62760561 GA
131 GA
* *
62760563 GAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * *
62760628 TTTTGTCACCCTAAACAATAGTGGAGCAGATCGAATATGATGAATGTTATCTTCCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62760693 GA
131 GA
*
62760695 GAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* ***
62760760 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAAACTTATCTTTGTAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62760825 GA
131 GA
* *
62760827 GAAGCATATTTAAGCCATTAGTCCTATTACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
*
62760892 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGATGATGGTG-A----ATCTTCCCAATACAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62760952 GA
131 GA
* * * *
62760954 GAAGCAGATTTAAGTCATTAGTCCTATCACCCTAAGCAGTTGGGGAGTAGGTTGAAGATTTCAGA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * * *
62761019 TTCTGTCCCCCTATGTAGTAGTGGAGCAGATCGAAGGTGGTAAATCTTATATTCCCAATATAGTG
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
62761084 GA
131 GA
* * * * * * *
62761086 GAAGCAGATTTAAGTCATTAGCCCTATCTCCCTGAGCAGCAGTGGAGTCGGTTGAAGATTGCAAA
1 GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * * * *
62761151 TTTTGTCTCCCTAAGCTGTAGTGGAACATATCAAAGATAGTGCATCTTATCTTCCCAA
66 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
62761209 GATTGTAGGG
Statistics
Matches: 2762, Mismatches: 365, Indels: 58
0.87 0.11 0.02
Matches are distributed among these distances:
127 111 0.04
128 3 0.00
129 106 0.04
130 7 0.00
131 200 0.07
132 2211 0.80
133 10 0.00
135 2 0.00
137 1 0.00
138 34 0.01
139 76 0.03
140 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (132 bp):
GAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
GA
Found at i:62761894 original size:19 final size:20
Alignment explanation
Indices: 62761872--62761909 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62761862 CCAAATCCTT
*
62761872 TTTTGTTCA-TTTTTATTTA
1 TTTTATTCATTTTTTATTTA
62761891 TTTTATTCATTTTTTATTT
1 TTTTATTCATTTTTTATTT
62761910 TGTTTTGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (20 bp):
TTTTATTCATTTTTTATTTA
Found at i:62762558 original size:3 final size:3
Alignment explanation
Indices: 62762545--62762580 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
62762535 ATTTTCTTAA
62762545 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
62762581 CCCTCATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:62762690 original size:23 final size:22
Alignment explanation
Indices: 62762647--62762690 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
62762637 CATGTGCATG
*
62762647 CGTACATTTTTTTTATATTATA
1 CGTACATTTTTTTAATATTATA
62762669 CGTACATATTTTTGTAAT-TTAT
1 CGTACAT-TTTTT-TAATATTAT
62762691 TTATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 7 0.37
23 9 0.47
24 3 0.16
ACGTcount: A:0.27, C:0.09, G:0.07, T:0.57
Consensus pattern (22 bp):
CGTACATTTTTTTAATATTATA
Found at i:62762748 original size:12 final size:12
Alignment explanation
Indices: 62762727--62762756 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
62762717 TTTTATATTT
62762727 TATA-ATTTTTA
1 TATACATTTTTA
62762738 TATACATTTTTA
1 TATACATTTTTA
62762750 TATACAT
1 TATACAT
62762757 ATACGCGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (12 bp):
TATACATTTTTA
Found at i:62762930 original size:31 final size:31
Alignment explanation
Indices: 62762863--62762928 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
62762853 TACACACTTT
* *
62762863 TTTTATAACGTATATACTTATATTATATATA
1 TTTTATAACGTATATACCTATATTATAAATA
*
62762894 TTTTATAATC-TATATACCTATATATGTAAATA
1 TTTTATAA-CGTATATACCTATAT-TATAAATA
62762926 TTT
1 TTT
62762929 ATGATTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 20 0.67
32 10 0.33
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.52
Consensus pattern (31 bp):
TTTTATAACGTATATACCTATATTATAAATA
Found at i:62769132 original size:23 final size:24
Alignment explanation
Indices: 62769106--62769152 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
62769096 ACCCATAAAA
62769106 CTTAA-ATCACTAAGTTCACATTC
1 CTTAACATCACTAAGTTCACATTC
*
62769129 CTTAAGCATTACTAAGTTCACATT
1 CTTAA-CATCACTAAGTTCACATT
62769153 ATTTTGGACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
25 16 0.76
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.36
Consensus pattern (24 bp):
CTTAACATCACTAAGTTCACATTC
Found at i:62770299 original size:27 final size:27
Alignment explanation
Indices: 62770269--62770446 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62770259 ATATTGAGTC
* * * *
62770269 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
62770296 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62770323 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
62770351 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
62770378 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
62770405 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
62770432 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62770447 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:62770408 original size:82 final size:81
Alignment explanation
Indices: 62770290--62770445 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62770280 TGCTATATAA
* *
62770290 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
62770355 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
62770372 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
62770436 CACTTAGTGC
65 CACTTAGTGC
62770446 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:62775128 original size:29 final size:29
Alignment explanation
Indices: 62775079--62775146 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
62775069 CAAGGAAGTT
* * *
62775079 AATTTCGACTGTGGCTACGAAATCTTAGC
1 AATTTCGACTATGGCTACGAAATCTCAAC
* * *
62775108 AATTTCGACTATGGTTGCGAACTCTCAAC
1 AATTTCGACTATGGCTACGAAATCTCAAC
*
62775137 AATTTTGACT
1 AATTTCGACT
62775147 GGCAACAGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (29 bp):
AATTTCGACTATGGCTACGAAATCTCAAC
Found at i:62790028 original size:3 final size:3
Alignment explanation
Indices: 62790020--62790107 Score: 54
Period size: 3 Copynumber: 29.7 Consensus size: 3
62790010 ATATTGCATG
* * * * * * *
62790020 TAA TAA TAA TAA TAA TAA TTA TTA TTA TTA TAA T-A TAT TGCA T-G
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* * * *
62790064 TAA TAA TAA TAA TAA TAA TAA TTA TTA TAA TAG TAA TTA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
62790108 TATTGCATGC
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
2 3 0.04
3 65 0.94
4 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.43
Consensus pattern (3 bp):
TAA
Found at i:62790070 original size:44 final size:44
Alignment explanation
Indices: 62790007--62790091 Score: 161
Period size: 44 Copynumber: 1.9 Consensus size: 44
62789997 TCATGGGTAG
*
62790007 AATATATTGCATGTAATAATAATAATAATAATTATTATTATTAT
1 AATATATTGCATGTAATAATAATAATAATAATAATTATTATTAT
62790051 AATATATTGCATGTAATAATAATAATAATAATAATTATTAT
1 AATATATTGCATGTAATAATAATAATAATAATAATTATTAT
62790092 AATAGTAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (44 bp):
AATATATTGCATGTAATAATAATAATAATAATAATTATTATTAT
Found at i:62800341 original size:33 final size:31
Alignment explanation
Indices: 62800304--62800369 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
62800294 TTAGTGTAAT
*
62800304 TATACACAGGAAATTCTAATTGTGATTCAAATA
1 TATACACA-AAAATT-TAATTGTGATTCAAATA
* * *
62800337 TATACATAAAAATTTGATTGTGATTCAACTA
1 TATACACAAAAATTTAATTGTGATTCAAATA
62800368 TA
1 TA
62800370 CACATTTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 17 0.59
32 5 0.17
33 7 0.24
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (31 bp):
TATACACAAAAATTTAATTGTGATTCAAATA
Found at i:62802168 original size:187 final size:187
Alignment explanation
Indices: 62801874--62802248 Score: 723
Period size: 187 Copynumber: 2.0 Consensus size: 187
62801864 GTGAGTTTGG
*
62801874 ATGACGGTGTATTCACCTGCGATTAGTGTAAAAACAGCGATGGCGGTGAGAATAGATATTGTAAC
1 ATGACGGTGTATTCACCTGCGATTAGTGTAAAAACAGCAATGGCGGTGAGAATAGATATTGTAAC
62801939 GATACTGTAGTTATGTATCTAATCGCCCATCCAAACCTACACTAAGTTTCTAAAAGACATGATGG
66 GATACTGTAGTTATGTATCTAATCGCCCATCCAAACCTACACTAAGTTTCTAAAAGACATGATGG
62802004 TTTTAATGCGGGCGGTGGGAATGATATCGATTAGCATTAAATTCATTTAAAGCCAAC
131 TTTTAATGCGGGCGGTGGGAATGATATCGATTAGCATTAAATTCATTTAAAGCCAAC
*
62802061 ATGACGGTGTATTCACCTGCGATTAGTGTAAAAACAGCAATGGCGGTGAGATTAGATATTGTAAC
1 ATGACGGTGTATTCACCTGCGATTAGTGTAAAAACAGCAATGGCGGTGAGAATAGATATTGTAAC
*
62802126 GATACTGTAGTTATGTATCTAATCGCCTATCCAAACCTACACTAAGTTTCTAAAAGACATGATGG
66 GATACTGTAGTTATGTATCTAATCGCCCATCCAAACCTACACTAAGTTTCTAAAAGACATGATGG
62802191 TTTTAATGCGGGCGGTGGGAATGATATCGATTAGCATTAAATTCATTTAAAGCCAAC
131 TTTTAATGCGGGCGGTGGGAATGATATCGATTAGCATTAAATTCATTTAAAGCCAAC
62802248 A
1 A
62802249 ACTGCCATGC
Statistics
Matches: 185, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
187 185 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (187 bp):
ATGACGGTGTATTCACCTGCGATTAGTGTAAAAACAGCAATGGCGGTGAGAATAGATATTGTAAC
GATACTGTAGTTATGTATCTAATCGCCCATCCAAACCTACACTAAGTTTCTAAAAGACATGATGG
TTTTAATGCGGGCGGTGGGAATGATATCGATTAGCATTAAATTCATTTAAAGCCAAC
Found at i:62808119 original size:20 final size:20
Alignment explanation
Indices: 62808090--62808149 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
62808080 ATTTTAAAAT
*
62808090 CAAGTGAAAATCATTTTAAC
1 CAAGTCAAAATCATTTTAAC
* *
62808110 CAAGTCAAAATGATTTTAAT
1 CAAGTCAAAATCATTTTAAC
*
62808130 CAAGTTAAAATCATTTTAAC
1 CAAGTCAAAATCATTTTAAC
62808150 ACATTAAACA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.33
Consensus pattern (20 bp):
CAAGTCAAAATCATTTTAAC
Found at i:62808209 original size:21 final size:19
Alignment explanation
Indices: 62808183--62808239 Score: 62
Period size: 18 Copynumber: 2.9 Consensus size: 19
62808173 CCAAGCCAAA
62808183 AAGTATCAATACCATTTGG
1 AAGTATCAATACCATTTGG
**
62808202 CCAAGTATCAATA-TTTTTGG
1 --AAGTATCAATACCATTTGG
*
62808222 AAGTATCAATACCCTTTG
1 AAGTATCAATACCATTTG
62808240 AAAAATCGAG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 11 0.35
19 4 0.13
20 5 0.16
21 11 0.35
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (19 bp):
AAGTATCAATACCATTTGG
Found at i:62811124 original size:21 final size:22
Alignment explanation
Indices: 62811083--62811126 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
62811073 ATATTAGTTG
62811083 AGAAAAAAATAAATATGTACATA
1 AGAAAAAAATAAATA-GTACATA
*
62811106 AGAAAACAATAAATA-TACATA
1 AGAAAAAAATAAATAGTACATA
62811127 TATATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
23 14 0.70
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (22 bp):
AGAAAAAAATAAATAGTACATA
Found at i:62819110 original size:20 final size:20
Alignment explanation
Indices: 62819081--62819172 Score: 73
Period size: 20 Copynumber: 4.6 Consensus size: 20
62819071 ATTTTAAAAT
*
62819081 CAAGTGAAAATTATTTTAAC
1 CAAGTCAAAATTATTTTAAC
* *
62819101 CAAGTCAAAATGATTTCAAC
1 CAAGTCAAAATTATTTTAAC
* * *
62819121 AAAGTTC-GAATCATTTTAA-
1 CAAG-TCAAAATTATTTTAAC
*
62819140 CACA-TCAAAATTATTTTCAAA
1 CA-AGTCAAAATTATTTT-AAC
62819161 CAAGTCAAAATT
1 CAAGTCAAAATT
62819173 GCTCGAGGCC
Statistics
Matches: 56, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
18 2 0.04
19 9 0.16
20 33 0.59
21 12 0.21
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.32
Consensus pattern (20 bp):
CAAGTCAAAATTATTTTAAC
Found at i:62819222 original size:19 final size:18
Alignment explanation
Indices: 62819186--62819234 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
62819176 CGAGGCCAAA
*
62819186 AAGTATTGATACTATTTGG
1 AAGTATCGATACTATTT-G
* *
62819205 AAGTATCGATATTTTTTG
1 AAGTATCGATACTATTTG
*
62819223 AATTATCGATAC
1 AAGTATCGATAC
62819235 CCTTTAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 11 0.44
19 14 0.56
ACGTcount: A:0.33, C:0.08, G:0.16, T:0.43
Consensus pattern (18 bp):
AAGTATCGATACTATTTG
Found at i:62825817 original size:68 final size:68
Alignment explanation
Indices: 62825705--62825840 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 68
62825695 TTAAGAAACT
* * * *
62825705 TGTTACTCGTACAATTCTGCCTGAAACCCAAAAAACACAGATACTCGATGTCCCTATTCTCACGT
1 TGTTACTCGTACAATTCAGCCAGAAACCCAAAAAACACAAATACTCGATGTCCCTATTCTCACAT
62825770 CCA
66 CCA
*
62825773 TGTTACTCGTACAATTCAGCCAGAAACCCAATAAACACAAATACTCGATGTCCCTATTCTCACAT
1 TGTTACTCGTACAATTCAGCCAGAAACCCAAAAAACACAAATACTCGATGTCCCTATTCTCACAT
62825838 CCA
66 CCA
62825841 CGGAAAGCTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.33, C:0.31, G:0.10, T:0.26
Consensus pattern (68 bp):
TGTTACTCGTACAATTCAGCCAGAAACCCAAAAAACACAAATACTCGATGTCCCTATTCTCACAT
CCA
Found at i:62827041 original size:545 final size:546
Alignment explanation
Indices: 62826010--62827104 Score: 2138
Period size: 545 Copynumber: 2.0 Consensus size: 546
62826000 TCAATATTTT
62826010 TATCATTTTTGGGGGCCAAAGTGTAATTTTACCGTTACTAATTTAGAATTTAATAAATTATAAAG
1 TATCATTTTTGGGGGCCAAAGTGTAATTTTACCGTTACTAATTTAGAATTTAATAAATTATAAAG
62826075 GATCTAAATTAAAATGTTATCATTTTCAGGGGGCCATGCCCCCCCTAGGTCTCCACTACGCTCCG
66 GATCTAAATTAAAATGTTATCATTTTCAGGGGGCCATG-CCCCCCTAGGTCTCCACTACGCTCCG
*
62826140 CCACTGCTTACACCACTGAGTGATTACACCTAGGGGTGTAGCTAAGGGCTAGCAGGGGCCCTGAC
130 CCACTGCTTACACCACCGAGTGATTACACCTAGGGGTGTAGCTAAGGGCTAGCAGGGGCCCTGAC
62826205 CCCCCTCAAAAGTGGGAAAATTTCTATTTAGGCCCTTTAAAGATTTTAAATTTTAAATTAGTAAA
195 CCCCCTCAAAAGTGGGAAAATTTCTATTTAGGCCCTTTAAAGATTTTAAATTTTAAATTAGTAAA
*
62826270 AGTAAAATTGAACTTTGGGTCCTCTAAAAATACTTAAAAGAATTGATTTAATCCTTTAAAAATTA
260 AGTAAAATTGAACTTTGGGTCCTCTAAAAATAATTAAAAGAATTGATTTAATCCTTTAAAAATTA
*
62826335 TAAAGATATAGGCTCTTAAAATGGTATTTTTGTATTTTTAATATCGTAAAAGGGTTTTAAAATTT
325 TAAAGATATAGGCTATTAAAATGGTATTTTTGTATTTTTAATATCGTAAAAGGGTTTTAAAATTT
*
62826400 AATTCAGCTCCCTCCTAAAAAATTTTTTGGTTTCGCCCCTGATTACACCCCATTCATGGCTACCA
390 AATTCAGCTCCCTCCTAAAAAAATTTTTGGTTTCGCCCCTGATTACACCCCATTCATGGCTACCA
62826465 CTTGATATACTTATTTATACATGAATGTCTATGTGAGCCTGATAAAAGGAACCCACAAAGGGTTC
455 CTTGATATACTTATTTATACATGAATGTCTATGTGAGCCTGATAAAAGGAACCCACAAAGGGTTC
62826530 TCACAGGTGGCTATATGCCCTTACATA
520 TCACAGGTGGCTATATGCCCTTACATA
62826557 TATCATTTTTGGGGGCCAAAGTGTAATTTTACCGTTACTAATTTAGAATTTAATAAATTATAAAG
1 TATCATTTTTGGGGGCCAAAGTGTAATTTTACCGTTACTAATTTAGAATTTAATAAATTATAAAG
62826622 GATCTAAATTAAAATGTTATCATTTTCAGGGGGCCATG-CCCCCTAGGTCTCCACTACGCTCCGC
66 GATCTAAATTAAAATGTTATCATTTTCAGGGGGCCATGCCCCCCTAGGTCTCCACTACGCTCCGC
62826686 CACTGCTTACACCACCGAGTGATTACACCTAGGGGTGTAGCTAAGGGCTAGCAGGGGCCCTGACC
131 CACTGCTTACACCACCGAGTGATTACACCTAGGGGTGTAGCTAAGGGCTAGCAGGGGCCCTGACC
62826751 CCCCTCAAAAGTGGGAAAATTTCTATTTAGGCCCTTTAAAGATTTTAAATTTTAAATTAGTAAAA
196 CCCCTCAAAAGTGGGAAAATTTCTATTTAGGCCCTTTAAAGATTTTAAATTTTAAATTAGTAAAA
62826816 GTAAAATTGAACTTTGGGTCCTCTAAAAATAATTAAAAGAATTGATTTAATCCTTTAAAAATTAT
261 GTAAAATTGAACTTTGGGTCCTCTAAAAATAATTAAAAGAATTGATTTAATCCTTTAAAAATTAT
62826881 AAAGATATAGGCTATTAAAATGGTATTTTTGTATTTTTAATATCGTAAAAGGGTTTTAAAATTTA
326 AAAGATATAGGCTATTAAAATGGTATTTTTGTATTTTTAATATCGTAAAAGGGTTTTAAAATTTA
62826946 ATTCAGCTCCCTCCTAAAAAAATTTTTGGTTTCGCCCCTGATTACACCCCATTCATGGCTACCAC
391 ATTCAGCTCCCTCCTAAAAAAATTTTTGGTTTCGCCCCTGATTACACCCCATTCATGGCTACCAC
62827011 TTGATATACTTATTTATACATGAATGTCTATGTGAGCCTGATAAAAGGAACCCACAAAGGGTTCT
456 TTGATATACTTATTTATACATGAATGTCTATGTGAGCCTGATAAAAGGAACCCACAAAGGGTTCT
62827076 CACAGGTGGCTATATGCCCTTACATA
521 CACAGGTGGCTATATGCCCTTACATA
62827102 TAT
1 TAT
62827105 GTATATTCAT
Statistics
Matches: 544, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
545 441 0.81
547 103 0.19
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (546 bp):
TATCATTTTTGGGGGCCAAAGTGTAATTTTACCGTTACTAATTTAGAATTTAATAAATTATAAAG
GATCTAAATTAAAATGTTATCATTTTCAGGGGGCCATGCCCCCCTAGGTCTCCACTACGCTCCGC
CACTGCTTACACCACCGAGTGATTACACCTAGGGGTGTAGCTAAGGGCTAGCAGGGGCCCTGACC
CCCCTCAAAAGTGGGAAAATTTCTATTTAGGCCCTTTAAAGATTTTAAATTTTAAATTAGTAAAA
GTAAAATTGAACTTTGGGTCCTCTAAAAATAATTAAAAGAATTGATTTAATCCTTTAAAAATTAT
AAAGATATAGGCTATTAAAATGGTATTTTTGTATTTTTAATATCGTAAAAGGGTTTTAAAATTTA
ATTCAGCTCCCTCCTAAAAAAATTTTTGGTTTCGCCCCTGATTACACCCCATTCATGGCTACCAC
TTGATATACTTATTTATACATGAATGTCTATGTGAGCCTGATAAAAGGAACCCACAAAGGGTTCT
CACAGGTGGCTATATGCCCTTACATA
Found at i:62828599 original size:12 final size:12
Alignment explanation
Indices: 62828582--62828618 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
62828572 CGTAGGTTCC
62828582 GTAATGTGTTAT
1 GTAATGTGTTAT
*
62828594 GTAA--TGATAT
1 GTAATGTGTTAT
62828604 GTAATGTGTTAT
1 GTAATGTGTTAT
62828616 GTA
1 GTA
62828619 GTTTCTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
10 9 0.43
12 12 0.57
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (12 bp):
GTAATGTGTTAT
Found at i:62829049 original size:6 final size:6
Alignment explanation
Indices: 62828972--62829053 Score: 62
Period size: 6 Copynumber: 13.7 Consensus size: 6
62828962 TGGGGGTAGG
* * * * * *
62828972 ATCTAT ATCTGT AT-TAGT ATTTGT ATATGT ATCTGT GTCTGT AACTGC
1 ATCTGT ATCTGT ATCT-GT ATCTGT ATCTGT ATCTGT ATCTGT ATCTGT
62829020 ATCTGT AT-TCGT ATCTGT -TACTGT ATCTGT ATCT
1 ATCTGT ATCT-GT ATCTGT AT-CTGT ATCTGT ATCT
62829054 ATGCTGTTTG
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
5 3 0.05
6 55 0.90
7 3 0.05
ACGTcount: A:0.21, C:0.15, G:0.16, T:0.49
Consensus pattern (6 bp):
ATCTGT
Found at i:62831315 original size:20 final size:19
Alignment explanation
Indices: 62831278--62831314 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
62831268 TAATAATAAT
62831278 ATTTAATATTAAAATTTTG
1 ATTTAATATTAAAATTTTG
62831297 ATTT-ATATATAAAATTTT
1 ATTTAATAT-TAAAATTTT
62831315 TATTATTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
ATTTAATATTAAAATTTTG
Found at i:62835689 original size:63 final size:63
Alignment explanation
Indices: 62835611--62835735 Score: 151
Period size: 63 Copynumber: 2.0 Consensus size: 63
62835601 ATGTGTCTTA
* * * * *
62835611 AATATAAACTAAGTGAGTCACACGACCTGGACACATGCCTGTATGTCTTACTCGTGTGACTCT
1 AATACAAACTAAGTGAGTCACACGACCTAGACACACGCCTGTATGTCTCACCCGTGTGACTCT
* * * * * *
62835674 AATACAAACTTAGTGAGTTACATGGCCTAGACACACGCTTGTGTGTCTCACCCGTGTGACTC
1 AATACAAACTAAGTGAGTCACACGACCTAGACACACGCCTGTATGTCTCACCCGTGTGACTC
62835736 CTACATCTCA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 51 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (63 bp):
AATACAAACTAAGTGAGTCACACGACCTAGACACACGCCTGTATGTCTCACCCGTGTGACTCT
Found at i:62836410 original size:19 final size:19
Alignment explanation
Indices: 62836386--62836422 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
62836376 AAAATTTGAG
* *
62836386 AAAAAAATAAAATGAAAGT
1 AAAAAAAGAAAAGGAAAGT
62836405 AAAAAAAGAAAAGGAAAG
1 AAAAAAAGAAAAGGAAAG
62836423 AAGAGGAGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAAAAAGAAAAGGAAAGT
Found at i:62837410 original size:25 final size:25
Alignment explanation
Indices: 62837374--62837423 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
62837364 GACACCAACT
* *
62837374 CAAGACCCAAAACCTATCGATCACC
1 CAAGACCAAAAACCCATCGATCACC
*
62837399 CAAGACCAAAAACCCGTCGATCACC
1 CAAGACCAAAAACCCATCGATCACC
62837424 GAACTCGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.40, C:0.40, G:0.10, T:0.10
Consensus pattern (25 bp):
CAAGACCAAAAACCCATCGATCACC
Found at i:62840277 original size:7 final size:7
Alignment explanation
Indices: 62840265--62840295 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
62840255 GACGTTACTA
62840265 AAAAAAT
1 AAAAAAT
62840272 AAAAAAT
1 AAAAAAT
62840279 AAAAAAT
1 AAAAAAT
62840286 AAAAAAT
1 AAAAAAT
62840293 AAA
1 AAA
62840296 GAAGATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (7 bp):
AAAAAAT
Found at i:62841927 original size:11 final size:11
Alignment explanation
Indices: 62841911--62841960 Score: 57
Period size: 10 Copynumber: 4.5 Consensus size: 11
62841901 TTTAAAATTT
62841911 AAAAATTATTA
1 AAAAATTATTA
*
62841922 AAAAATCA-TA
1 AAAAATTATTA
*
62841932 AAAAATTATAA
1 AAAAATTATTA
62841943 ACAAAATTTATTA
1 A-AAAA-TTATTA
62841956 AAAAA
1 AAAAA
62841961 ATTTATATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
10 9 0.28
11 9 0.28
12 8 0.25
13 6 0.19
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAAATTATTA
Found at i:62841953 original size:13 final size:12
Alignment explanation
Indices: 62841911--62841967 Score: 50
Period size: 13 Copynumber: 4.9 Consensus size: 12
62841901 TTTAAAATTT
*
62841911 AAAAA-TTATTA
1 AAAAATTTATAA
*
62841922 AAAAA-TCAT-A
1 AAAAATTTATAA
62841932 AAAAA-TTATAA
1 AAAAATTTATAA
62841943 ACAAAATTTATTAA
1 A-AAAATTTA-TAA
62841957 AAAAATTTATA
1 AAAAATTTATA
62841968 TATTTTTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
10 9 0.22
11 10 0.25
12 6 0.15
13 11 0.28
14 4 0.10
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAATTTATAA
Found at i:62841983 original size:17 final size:17
Alignment explanation
Indices: 62841958--62841992 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
62841948 ATTTATTAAA
62841958 AAAATTTATATATTTTTT
1 AAAATTTATA-ATTTTTT
62841976 AAAA-TTATAATTTTTT
1 AAAATTTATAATTTTTT
62841992 A
1 A
62841993 TTAAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 5 0.29
18 4 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AAAATTTATAATTTTTT
Found at i:62846724 original size:12 final size:12
Alignment explanation
Indices: 62846709--62846745 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
62846699 ATTGTTATAA
62846709 TTATTTTATTTT
1 TTATTTTATTTT
*
62846721 TTATTATATTTT
1 TTATTTTATTTT
62846733 TTATTTTAGTTTT
1 TTATTTTA-TTTT
62846746 ACTATTTCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (12 bp):
TTATTTTATTTT
Found at i:62852485 original size:40 final size:39
Alignment explanation
Indices: 62852396--62852576 Score: 186
Period size: 40 Copynumber: 4.6 Consensus size: 39
62852386 CTCGTTCAAG
* **
62852396 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATACAA
1 TGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAA
* *
62852435 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC-AA
* *
62852475 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC-AA
* * * * *
62852515 GGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAA
1 TGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAA
*
62852555 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
62852577 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 32 0.27
40 80 0.67
41 8 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAA
Found at i:62860172 original size:40 final size:39
Alignment explanation
Indices: 62860074--62860336 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
62860064 TCCTCGTTCA
* * * *
62860074 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
62860113 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
62860152 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
62860192 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
62860232 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
62860272 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
62860313 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
62860337 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:62860296 original size:120 final size:119
Alignment explanation
Indices: 62860074--62860336 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
62860064 TCCTCGTTCA
* * *
62860074 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
62860139 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
62860192 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
62860257 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
62860313 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
62860337 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:62860345 original size:41 final size:41
Alignment explanation
Indices: 62860268--62860345 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
62860258 TTTGTATCTC
* * *
62860268 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
62860309 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
62860346 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:62869499 original size:44 final size:44
Alignment explanation
Indices: 62869433--62869789 Score: 324
Period size: 44 Copynumber: 8.1 Consensus size: 44
62869423 AAAGCCACAA
* * * * *
62869433 ATTAAAGCTATAAATCTTATCTCTCTAAAGTTGCAGTAGAGTAG
1 ATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * * *
62869477 ATTAAAGCTATAAATCTCATCTCACTAAAGTTGCAGTGGAGCAA
1 ATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* ** * * * *
62869521 ATTAAAGCTACAAATCTCATCTCATTGAAGTTTCAGTAGAGTAA
1 ATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* *
62869565 ATTAAATCCACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 ATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * *
62869609 ATTGAAGATAACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 ATTAAAGCT-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * * * *
62869654 ATTGAAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGGTA--AA
1 ATTAAAGCTA-CAAATCTTATCTCCCTGAAGTTGCAGTGG-AGCAG
* *
62869698 ACTACAAG-TCACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAG
1 ATTA-AAGCT-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * ** *
62869743 ATTGAAGCTACAAGTCTTATCTCTCTGAAGTTGTGGTGGAGTAG
1 ATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
62869787 ATT
1 ATT
62869790 GAAATAACAC
Statistics
Matches: 264, Mismatches: 41, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.00
44 184 0.70
45 78 0.30
46 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (44 bp):
ATTAAAGCTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
Found at i:62871769 original size:12 final size:12
Alignment explanation
Indices: 62871747--62871771 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62871737 ATTATTATTA
62871747 TTATTTTATTTT
1 TTATTTTATTTT
62871759 TTATTTTATTTT
1 TTATTTTATTTT
62871771 T
1 T
62871772 ACTATTTCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTATTTTATTTT
Found at i:62884159 original size:29 final size:29
Alignment explanation
Indices: 62884117--62884173 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
62884107 ATGATTTGGT
62884117 TTGAGAATTTAAATTACAAAATGAAAATG
1 TTGAGAATTTAAATTACAAAATGAAAATG
*
62884146 TTGAGAATTTAAATTACGAAATGAAAAT
1 TTGAGAATTTAAATTACAAAATGAAAAT
62884174 AATGTTTGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.51, C:0.04, G:0.14, T:0.32
Consensus pattern (29 bp):
TTGAGAATTTAAATTACAAAATGAAAATG
Found at i:62890173 original size:27 final size:27
Alignment explanation
Indices: 62890142--62890202 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
62890132 TGGCCGCTTA
62890142 ATTTTGGCCACAATAATGGGCCACATG
1 ATTTTGGCCACAATAATGGGCCACATG
* * *
62890169 GTTTTGGCTACAATAGTGGGCCACATG
1 ATTTTGGCCACAATAATGGGCCACATG
62890196 ATTTTGG
1 ATTTTGG
62890203 GCCTATTCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (27 bp):
ATTTTGGCCACAATAATGGGCCACATG
Found at i:62892075 original size:27 final size:27
Alignment explanation
Indices: 62892024--62892075 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
62892014 TTCATCGTCT
*
62892024 ACTACACCTACTGCTGACGTCCAATCC
1 ACTACACCTACTGCTGAAGTCCAATCC
* * *
62892051 ACTACACTTACTGTTGAAGTTCAAT
1 ACTACACCTACTGCTGAAGTCCAAT
62892076 ATGCTCTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (27 bp):
ACTACACCTACTGCTGAAGTCCAATCC
Found at i:62896349 original size:91 final size:91
Alignment explanation
Indices: 62896239--62896418 Score: 263
Period size: 91 Copynumber: 2.0 Consensus size: 91
62896229 CTCTTGAGGA
* * * * *
62896239 TTGTATCTGTCAGTAGATACTTTGAAAAGGGGATATTGTATCCGCATGTAGTGGCGTGTCTTTTT
1 TTGTATCTGCCAGTAGATACTTCGAAAACGGGATATTGTATCCGCATGTAGTGGAGTCTCTTTTT
*
62896304 TAATGGCC-AAGGTCTTGGTCATGTCT
66 TAATAGCCTAA-GTCTTGGTCATGTCT
* * *
62896330 TTGTATCTGCCAGTGGATACTTCGAGAACGGGATATTGTATCCGCATGTAGTGGATTCTCTTTTT
1 TTGTATCTGCCAGTAGATACTTCGAAAACGGGATATTGTATCCGCATGTAGTGGAGTCTCTTTTT
62896395 TAATAGCCTAAGTCTTGGTCATGT
66 TAATAGCCTAAGTCTTGGTCATGT
62896419 TATGTTAGGT
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
91 77 0.97
92 2 0.03
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (91 bp):
TTGTATCTGCCAGTAGATACTTCGAAAACGGGATATTGTATCCGCATGTAGTGGAGTCTCTTTTT
TAATAGCCTAAGTCTTGGTCATGTCT
Found at i:62905512 original size:12 final size:12
Alignment explanation
Indices: 62905485--62905517 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
62905475 ACGAAAAGAA
62905485 AAAAAGAAAAAT
1 AAAAAGAAAAAT
*
62905497 -AAAAGAAACAT
1 AAAAAGAAAAAT
62905508 AAAAAGAAAA
1 AAAAAGAAAA
62905518 TAGAGAGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.82, C:0.03, G:0.09, T:0.06
Consensus pattern (12 bp):
AAAAAGAAAAAT
Found at i:62910993 original size:3 final size:3
Alignment explanation
Indices: 62910985--62911032 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
62910975 ATGCACGTAT
*
62910985 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
62911033 GTTATTTGCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:62911741 original size:24 final size:24
Alignment explanation
Indices: 62911713--62911787 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 24
62911703 GGACACCAGT
62911713 GCCAACACCACCACCAGCTCCACC
1 GCCAACACCACCACCAGCTCCACC
* *
62911737 GCCAACAGCACCTCC-GACTCCACC
1 GCCAACACCACCACCAG-CTCCACC
* * *
62911761 TCCAACTCCACCACCAGCACCACC
1 GCCAACACCACCACCAGCTCCACC
62911785 GCC
1 GCC
62911788 GCCACCCAAG
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.27, C:0.57, G:0.09, T:0.07
Consensus pattern (24 bp):
GCCAACACCACCACCAGCTCCACC
Found at i:62913693 original size:160 final size:162
Alignment explanation
Indices: 62913365--62913733 Score: 444
Period size: 165 Copynumber: 2.3 Consensus size: 162
62913355 AATTTAAGAA
* * * * *
62913365 ATTAAAAAGTTAACTTTAATTACACATTGATTACAGAACACTCTCATATTTAACATTTAACTTAT
1 ATTAAAAAGTTAA-TTTAATTCCACATTGACTAGAGAACACTCTAATATCTAACATTTAACTTAT
*
62913430 AAATAAGTGACAATTTCTTCACTATTTTCATGAAAATGATGATTTTAATCCCACAATATTGACTA
65 AAATAAGTGACAATTTCTTCACTATTTTCATAAAAAT-ATGATTTTAATCCCAC-A-ATTGACTA
62913495 GAGAATATTCTCATAAATCACTTCTTCATAATTTTC
127 GAGAATATTCTCATAAATCACTTCTTCATAATTTTC
* * **
62913531 ATTAAAAAGTTAATTCTAA-TCCATATTGACTAGAGAACACTCTAATATCTCACATTTTTCTTAT
1 ATTAAAAAGTTAATT-TAATTCCACATTGACTAGAGAACACTCTAATATCTAACATTTAACTTAT
* *
62913595 AAATAAGTGACAATTT-TTCACTATTTTTATTAAAAAT-TTATTTTAATCCCAC-ATTGACTAGA
65 AAATAAGTGACAATTTCTTCACTATTTTCA-TAAAAATATGATTTTAATCCCACAATTGACTAGA
** * *
62913657 GAATACTT-TCATAGCTTAGTTCTTCACT-ATTTTC
129 GAATA-TTCTCATAAATCACTTCTTCA-TAATTTTC
* * *
62913691 ATTAAAAATTTAAATTTAATTCCACATTGTCTAGAGAAGACTC
1 ATTAAAAAGTT-AATTTAATTCCACATTGACTAGAGAACACTC
62913734 CTATAACTCA
Statistics
Matches: 177, Mismatches: 20, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
160 48 0.27
161 27 0.15
163 14 0.08
164 12 0.07
165 60 0.34
166 16 0.09
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (162 bp):
ATTAAAAAGTTAATTTAATTCCACATTGACTAGAGAACACTCTAATATCTAACATTTAACTTATA
AATAAGTGACAATTTCTTCACTATTTTCATAAAAATATGATTTTAATCCCACAATTGACTAGAGA
ATATTCTCATAAATCACTTCTTCATAATTTTC
Found at i:62913696 original size:68 final size:69
Alignment explanation
Indices: 62913611--62913765 Score: 206
Period size: 69 Copynumber: 2.3 Consensus size: 69
62913601 GTGACAATTT
* * * * * *
62913611 TTCACTATTTTTATTAAAAATTT-ATTTTAATCCCACATTGACTAGAGAATACT-TTCATAGCTT
1 TTCACTATTTTCATTAAAAATTTAAATTTAATCCCACATTGACTAGAGAAGACTCCT-ATAACTC
*
62913674 AGTTC
65 ACTTC
* *
62913679 TTCACTATTTTCATTAAAAATTTAAATTTAATTCCACATTGTCTAGAGAAGACTCCTATAACTCA
1 TTCACTATTTTCATTAAAAATTTAAATTTAATCCCACATTGACTAGAGAAGACTCCTATAACTCA
62913744 CTTC
66 CTTC
62913748 TTCACTATTTTCATTAAA
1 TTCACTATTTTCATTAAA
62913766 CATTCCAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
68 22 0.29
69 53 0.70
70 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.06, T:0.43
Consensus pattern (69 bp):
TTCACTATTTTCATTAAAAATTTAAATTTAATCCCACATTGACTAGAGAAGACTCCTATAACTCA
CTTC
Done.