Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 205 of 313
Found at i:62914170 original size:16 final size:17
Alignment explanation
Indices: 62914138--62914170 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
62914128 CTATTTCTAT
62914138 GTTTATAATATAATATA
1 GTTTATAATATAATATA
*
62914155 GTTTAT-ATATATTATA
1 GTTTATAATATAATATA
62914171 ATTTGTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (17 bp):
GTTTATAATATAATATA
Found at i:62918655 original size:20 final size:20
Alignment explanation
Indices: 62918632--62918672 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
62918622 CTCTAAATTG
62918632 AGAAGTTGAGTTCAGCTTAC
1 AGAAGTTGAGTTCAGCTTAC
62918652 AGAAGTTGAGTTCAGCTTAC
1 AGAAGTTGAGTTCAGCTTAC
62918672 A
1 A
62918673 AATCGCTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (20 bp):
AGAAGTTGAGTTCAGCTTAC
Found at i:62925117 original size:21 final size:20
Alignment explanation
Indices: 62925091--62925161 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
62925081 TTAAATTCTA
62925091 AATTTAAAAATATATTTTTTG
1 AATTTAAAAATA-ATTTTTTG
*
62925112 AATTTAAAATTAATTTTTT-
1 AATTTAAAAATAATTTTTTG
* *
62925131 ACTTATTTTAAAA-AATATTTTG
1 A---ATTTAAAAATAATTTTTTG
62925153 AATTTAAAA
1 AATTTAAAA
62925162 TTGTGATAGT
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
19 8 0.20
20 7 0.17
21 18 0.44
22 8 0.20
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (20 bp):
AATTTAAAAATAATTTTTTG
Found at i:62930713 original size:40 final size:40
Alignment explanation
Indices: 62930629--62930812 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
62930619 TTGAATGCTG
* * * *
62930629 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
62930668 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
62930709 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
62930749 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
62930789 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
62930813 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:62930766 original size:80 final size:81
Alignment explanation
Indices: 62930629--62930809 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
62930619 TTGAATGCTG
* *
62930629 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
62930693 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
62930709 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
62930770 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
62930789 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
62930810 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:62932284 original size:22 final size:21
Alignment explanation
Indices: 62932259--62932301 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
62932249 AACTTGAATT
*
62932259 TCTAA-ACTTAAAGAATTTAAAA
1 TCTAATAC-TAAA-AATCTAAAA
62932281 TCTAATACTAAAAATCTAAAA
1 TCTAATACTAAAAATCTAAAA
62932302 ACAAAAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 9 0.47
23 2 0.11
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.30
Consensus pattern (21 bp):
TCTAATACTAAAAATCTAAAA
Found at i:62932902 original size:17 final size:17
Alignment explanation
Indices: 62932882--62932914 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
62932872 AATCTAACTC
62932882 AAATCTAGATT-AAAAAG
1 AAATCTA-ATTCAAAAAG
62932899 AAATCTAATTCAAAAA
1 AAATCTAATTCAAAAA
62932915 TTCAAAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.61, C:0.09, G:0.06, T:0.24
Consensus pattern (17 bp):
AAATCTAATTCAAAAAG
Found at i:62942367 original size:38 final size:38
Alignment explanation
Indices: 62942316--62942392 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
62942306 TTACCAGTGG
62942316 GATAATTGCACAACTTCTCTAAACTTTTGGGTCAAGTT
1 GATAATTGCACAACTTCTCTAAACTTTTGGGTCAAGTT
*
62942354 GATAATTTCACAACTTCTCTAAACTTTTGGGTCAAGTT
1 GATAATTGCACAACTTCTCTAAACTTTTGGGTCAAGTT
62942392 G
1 G
62942393 TAAATCAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (38 bp):
GATAATTGCACAACTTCTCTAAACTTTTGGGTCAAGTT
Found at i:62942670 original size:68 final size:68
Alignment explanation
Indices: 62942545--62942678 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 68
62942535 TAATTAAACT
* ** * *
62942545 TAATCACTTTAATATTAAATTCATCTAATATTTATCAAGATAAATATTAGATTAATTTAACATTA
1 TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAATATTAAATTAATTTAACATTA
62942610 AGA
66 AGA
* *
62942613 TAATCACTTTAATATTAAATTAATAAAATA-CTATTAAGATAAGAT-TTAAATTAAATTTAATAT
1 TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAA-ATATTAAATT-AATTTAACAT
62942676 TAA
64 TAA
62942679 ATTATTAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
67 16 0.28
68 41 0.72
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.41
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATATCTATCAAGATAAATATTAAATTAATTTAACATTA
AGA
Found at i:62943129 original size:9 final size:9
Alignment explanation
Indices: 62943109--62943139 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
62943099 AAAATATCAT
62943109 ATTAATTTTA
1 ATTAA-TTTA
62943119 ATTAATTTA
1 ATTAATTTA
62943128 ATTAATTTA
1 ATTAATTTA
62943137 ATT
1 ATT
62943140 TTACTTAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.76
10 5 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTAATTTA
Found at i:62944538 original size:18 final size:18
Alignment explanation
Indices: 62944515--62944550 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
62944505 AACTTAGTTT
62944515 ATGAATGTGAGCATGATA
1 ATGAATGTGAGCATGATA
62944533 ATGAATGTGAGCATGATA
1 ATGAATGTGAGCATGATA
62944551 TTATGACGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (18 bp):
ATGAATGTGAGCATGATA
Found at i:62949466 original size:28 final size:28
Alignment explanation
Indices: 62949409--62949466 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 28
62949399 AACTTTTTTA
*
62949409 CATTTCCCTCAAAACTTTAACTCCTTCT
1 CATTTCCCTCAAAACTTTAACTCCTCCT
* * *
62949437 CATTTTCCTCCAAAATTTTTACTCC-CCT
1 CATTTCCCT-CAAAACTTTAACTCCTCCT
62949465 CA
1 CA
62949467 CCTCCCAACC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (28 bp):
CATTTCCCTCAAAACTTTAACTCCTCCT
Found at i:62960184 original size:12 final size:13
Alignment explanation
Indices: 62960164--62960220 Score: 62
Period size: 13 Copynumber: 4.3 Consensus size: 13
62960154 TTTATTTTTC
*
62960164 TTTATTTTTATT-
1 TTTAATTTTATTA
62960176 TTTAATTTTATTA
1 TTTAATTTTATTA
* *
62960189 TTTTATTGTATTA
1 TTTAATTTTATTA
62960202 TTTATTATTTTATTA
1 TTTA--ATTTTATTA
62960217 TTTA
1 TTTA
62960221 TCACTTTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
12 11 0.30
13 14 0.38
15 12 0.32
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTAATTTTATTA
Found at i:62960189 original size:15 final size:15
Alignment explanation
Indices: 62960171--62960221 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
62960161 TTCTTTATTT
62960171 TTATTT-TTAATTTTA
1 TTATTTATT-ATTTTA
*
62960186 TTA-TT-TTATTGTA
1 TTATTTATTATTTTA
62960199 TTATTTATTATTTTA
1 TTATTTATTATTTTA
62960214 TTATTTAT
1 TTATTTAT
62960222 CACTTTATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 8 0.25
14 6 0.19
15 18 0.56
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (15 bp):
TTATTTATTATTTTA
Found at i:62960194 original size:20 final size:20
Alignment explanation
Indices: 62960169--62960220 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
62960159 TTTTCTTTAT
62960169 TTTTATT-TTTAATTTTATTA
1 TTTTATTATTTAA-TTTATTA
*
62960189 TTTTATTGTATT-ATTTATTA
1 TTTTATTAT-TTAATTTATTA
62960209 TTTTATTATTTA
1 TTTTATTATTTA
62960221 TCACTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 2 0.07
20 22 0.79
21 2 0.07
22 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (20 bp):
TTTTATTATTTAATTTATTA
Found at i:62960228 original size:15 final size:15
Alignment explanation
Indices: 62960197--62960230 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
62960187 TATTTTATTG
* *
62960197 TATTATTTATTATTT
1 TATTATTTATCACTT
62960212 TATTATTTATCACTT
1 TATTATTTATCACTT
62960227 TATT
1 TATT
62960231 TTGTTTGGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTATTTATCACTT
Found at i:62962478 original size:30 final size:31
Alignment explanation
Indices: 62962433--62962491 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
62962423 ATTTAATATG
62962433 AACTTTGGCAAAATTACA-TTTTTACCCTTA
1 AACTTTGGCAAAATTACACTTTTTACCCTTA
* * *
62962463 AACTTTTGCATAATTACACTTTTTCCCCT
1 AACTTTGGCAAAATTACACTTTTTACCCT
62962492 AGGCTCGGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (31 bp):
AACTTTGGCAAAATTACACTTTTTACCCTTA
Found at i:62967665 original size:307 final size:300
Alignment explanation
Indices: 62967105--62967708 Score: 849
Period size: 307 Copynumber: 2.0 Consensus size: 300
62967095 TAATCGTAAC
* *
62967105 AACATAAGCATGAGTTTAATAATTCTAAGTTAAAGAAATGTAATTAATCCAACACAATTATGTCA
1 AACATAAACATGAGTTTAATAATTCTAAGTTAAAGAAATGTAATTAATCCAACACAATTATATCA
* * * *
62967170 TCTTGATGAAATCACATTTTGTAATCGTGCATTAGAAATTTTATTTTTATTTAGTTTAATATCTT
66 TCTTGATAAAATCACATTTTGAAATCGTGCATTAGAAATTTTATTTTTATTTAGTTTAAAAGCTT
* *
62967235 ATTTTTTTAATCACTCTTTTCAAAACAAAATATTTTTTTTACCAAAGTGTTTTAAATTACATTCA
131 ATGTTTTTAATCACTCTCTTC-AAACAAAATATTTTTTTTACCAAAGTGTTTTAAATTACATTCA
* * *
62967300 TAAATAATTCTTTTCACAGTGCCTGTGGGTACGATAATTCGACATTTACTTTTCACTTTATTACT
195 TAAATAATTCTTTTCACAGTGCCTATGGGTACGATAACTCGACATTTACTTGTCACTTTATTACT
*
62967365 TGTTGCGATTGTGTACACTTGCACATTTTTGTCGTTCCAAT
260 TGTTGCGATTGTGTACACTTGCACATTTCTGTCGTTCCAAT
* * *
62967406 AACATAAACATGAGTTTAATAATTCTAAGTTAAAGTAATGTAATTAATCTAGCACAATTATATCA
1 AACATAAACATGAGTTTAATAATTCTAAGTTAAAGAAATGTAATTAATCCAACACAATTATATCA
* * * *
62967471 TCTTGATTAAAATCATATTTTGAAATCGTGCGTTGGAGA-TTTATTTATTTAGTTTACTAAGTTT
66 TCTTGA-TAAAATCACATTTTGAAATCGTGCATTAGAAATTTTA-TT-TTTA--TT--T-AGTTT
62967535 AAAAGCTTA-GTTTTTAATCA-TCCTCTTC-AACAAAATATTTTTTCTTCACCAAAGTGTTTTAA
123 AAAAGCTTATGTTTTTAATCACT-CTCTTCAAACAAAATATTTTTT-TT-ACCAAAGTGTTTTAA
* * *
62967597 A-TAGCATTCATAAATAATTCTTTTCATAGTTCCTATGGGTACGATAACTCGACATTTAGTTGTC
185 ATTA-CATTCATAAATAATTCTTTTCACAGTGCCTATGGGTACGATAACTCGACATTTACTTGTC
*
62967661 ACTTTATTACTTGTTGCGATTGTTTACACTTGCACATTTCTGTCGTTC
249 ACTTTATTACTTGTTGCGATTGTGTACACTTGCACATTTCTGTCGTTC
62967709 TAAGTTTTTG
Statistics
Matches: 268, Mismatches: 23, Indels: 18
0.87 0.07 0.06
Matches are distributed among these distances:
301 70 0.26
302 28 0.10
303 4 0.01
305 17 0.06
306 5 0.02
307 132 0.49
308 12 0.04
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (300 bp):
AACATAAACATGAGTTTAATAATTCTAAGTTAAAGAAATGTAATTAATCCAACACAATTATATCA
TCTTGATAAAATCACATTTTGAAATCGTGCATTAGAAATTTTATTTTTATTTAGTTTAAAAGCTT
ATGTTTTTAATCACTCTCTTCAAACAAAATATTTTTTTTACCAAAGTGTTTTAAATTACATTCAT
AAATAATTCTTTTCACAGTGCCTATGGGTACGATAACTCGACATTTACTTGTCACTTTATTACTT
GTTGCGATTGTGTACACTTGCACATTTCTGTCGTTCCAAT
Found at i:62971126 original size:144 final size:144
Alignment explanation
Indices: 62970866--62971154 Score: 578
Period size: 144 Copynumber: 2.0 Consensus size: 144
62970856 GGTGAGACTA
62970866 TTACTATTTTCTCGATGGATACTCGGGGTATAATCAGATTACAGTAGCACCAGAAGATCAGCATA
1 TTACTATTTTCTCGATGGATACTCGGGGTATAATCAGATTACAGTAGCACCAGAAGATCAGCATA
62970931 AGACAACATTCACCTGCCCGTGCGGTACATTTGCATTTAGACACATGCCATTTGGTTTATGTAAT
66 AGACAACATTCACCTGCCCGTGCGGTACATTTGCATTTAGACACATGCCATTTGGTTTATGTAAT
62970996 GCACCTACTACATT
131 GCACCTACTACATT
62971010 TTACTATTTTCTCGATGGATACTCGGGGTATAATCAGATTACAGTAGCACCAGAAGATCAGCATA
1 TTACTATTTTCTCGATGGATACTCGGGGTATAATCAGATTACAGTAGCACCAGAAGATCAGCATA
62971075 AGACAACATTCACCTGCCCGTGCGGTACATTTGCATTTAGACACATGCCATTTGGTTTATGTAAT
66 AGACAACATTCACCTGCCCGTGCGGTACATTTGCATTTAGACACATGCCATTTGGTTTATGTAAT
62971140 GCACCTACTACATT
131 GCACCTACTACATT
62971154 T
1 T
62971155 CAAAGATGTA
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
144 145 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (144 bp):
TTACTATTTTCTCGATGGATACTCGGGGTATAATCAGATTACAGTAGCACCAGAAGATCAGCATA
AGACAACATTCACCTGCCCGTGCGGTACATTTGCATTTAGACACATGCCATTTGGTTTATGTAAT
GCACCTACTACATT
Found at i:62989599 original size:40 final size:40
Alignment explanation
Indices: 62989544--62989851 Score: 607
Period size: 40 Copynumber: 7.7 Consensus size: 40
62989534 GAGCATTGGA
62989544 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62989584 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62989624 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62989664 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62989704 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62989744 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
62989784 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
62989824 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
62989852 ATGTGTTTGC
Statistics
Matches: 267, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 267 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:62994808 original size:5 final size:5
Alignment explanation
Indices: 62994794--62994833 Score: 64
Period size: 5 Copynumber: 8.2 Consensus size: 5
62994784 CTCGAATTTA
*
62994794 AAAAG TAAAG AAAAG AAAAG AAAAG AAAAG AAAA- AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
62994834 GCATGAGTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:62996779 original size:5 final size:5
Alignment explanation
Indices: 62996765--62996804 Score: 64
Period size: 5 Copynumber: 8.2 Consensus size: 5
62996755 CTCGAATTTA
*
62996765 AAAAG TAAAG AAAAG AAAAG AAAAG AAAAG AAAA- AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
62996805 GCATGAGTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:63007572 original size:43 final size:43
Alignment explanation
Indices: 63007523--63007669 Score: 190
Period size: 43 Copynumber: 3.4 Consensus size: 43
63007513 GATTACCGAG
* *
63007523 ATGTGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTGT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGT-T
* *
63007567 -TGTGATTACGTGTAAGAACATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTT
* * *
63007609 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATTGAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTT
* *
63007652 ATGTG-TAACATGTAAGAC
1 ATGTGATTACGTGTAAGAC
63007670 TCTGGGATAT
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 11 0.12
43 78 0.88
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.34
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTT
Found at i:63014316 original size:47 final size:47
Alignment explanation
Indices: 63014256--63014464 Score: 181
Period size: 47 Copynumber: 4.4 Consensus size: 47
63014246 AGAGCCAATA
*
63014256 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGGGCTAGTG
1 TAAGA-CATGTCTGGGACATGGCATCGGCATTGAGATGAGTGCTAGTG
* * ** ** * **
63014304 TAAGACATGTCTGGGAC-TTGCATCAGCCGTGTCATGATTGCCCGTG
1 TAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGTGCTAGTG
* * * *
63014350 TAAGACAACGTCTGGGACATGGCATTGGCATAGAGGTGAGTGCTAGTG
1 TAAGAC-ATGTCTGGGACATGGCATCGGCATTGAGATGAGTGCTAGTG
* * * *
63014398 TAAGACATGTCTGGGACAT-GCATCGGCCTCGATGATG-TTAGCCAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCATTGA-GATGAGT-GCTAGTG
* *
63014445 TAAGACGTGTTTGGGACATG
1 TAAGACATGTCTGGGACATG
63014465 CATTGAGTAA
Statistics
Matches: 124, Mismatches: 32, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
46 36 0.29
47 60 0.48
48 28 0.23
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (47 bp):
TAAGACATGTCTGGGACATGGCATCGGCATTGAGATGAGTGCTAGTG
Found at i:63016481 original size:91 final size:91
Alignment explanation
Indices: 63016376--63016679 Score: 599
Period size: 91 Copynumber: 3.3 Consensus size: 91
63016366 TGAGATGAGG
63016376 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
63016441 TGGGACATGCATTGAGTAAATTTCGT
66 TGGGACATGCATTGAGTAAATTTCGT
63016467 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
63016532 TGGGACATGCATTGAGTAAATTTCGT
66 TGGGACATGCATTGAGTAAATTTCGT
63016558 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
63016623 TGGGACATGCATTGAGTAAATTTCGT
66 TGGGACATGCATTGAGTAAATTTCGT
*
63016649 GCTAGTGTAAGACATGTATGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
63016680 AGCATGTATA
Statistics
Matches: 212, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 212 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
TGGGACATGCATTGAGTAAATTTCGT
Found at i:63016486 original size:44 final size:44
Alignment explanation
Indices: 63016426--63016678 Score: 262
Period size: 44 Copynumber: 5.6 Consensus size: 44
63016416 GATGTTAGCC
*
63016426 AGTGTAAGACGTGTCTGGGACATGCATTGAGTAAATTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGAGTAAATTTCGTGCT
* ** * *
63016470 AGTGTAAGACATGTCTGGGACATGCATCG-GCCTCGATGAT-GTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGAG--TAAAT-TTCG-T-GCT
*
63016517 AGTGTAAGACGTGTCTGGGACATGCATTGAGTAAATTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGAGTAAATTTCGTGCT
* ** * *
63016561 AGTGTAAGACATGTCTGGGACATGCATCG-GCCTCGATGAT-GTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGAG--TAAAT-TTCG-T-GCT
*
63016608 AGTGTAAGACGTGTCTGGGACATGCATTGAGTAAATTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGAGTAAATTTCGTGCT
*
63016652 AGTGTAAGACATGTATGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
63016679 CAGCATGTAT
Statistics
Matches: 169, Mismatches: 26, Indels: 28
0.76 0.12 0.13
Matches are distributed among these distances:
43 2 0.01
44 83 0.49
45 12 0.07
46 12 0.07
47 58 0.34
48 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATTGAGTAAATTTCGTGCT
Found at i:63018535 original size:47 final size:46
Alignment explanation
Indices: 63018475--63018920 Score: 250
Period size: 47 Copynumber: 9.6 Consensus size: 46
63018465 AGAGCCAATA
*
63018475 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGGGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGATGAGTGCTAGTG
* * ** ** * **
63018523 TAAGACATGTCTGGGACTTGCATCAGCCGTGTCATGATTGCCCGTG
1 TAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGTGCTAGTG
* * * *
63018569 TAAGACAACGTCTGGGACATGGCATTGGCATAGAGGTGAGTGCTAGTG
1 TAAGAC-ATGTCTGGGACAT-GCATCGGCATTGAGATGAGTGCTAGTG
* * * *
63018617 TAAGACATGTCTGGGACATGCATCGGCCTCGATGATG-TTAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATTGA-GATGAGT-GCTAGTG
* * * * * * **
63018664 TAAGACGTGTTTGGGACATGCAT-TG-AGTAAGTTTCGTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGTGCTAGTG
* * * *
63018708 TAAGACATGTCTGGGACATGCATCGGCCTCGATGATG-TTAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATTGA-GATGAGT-GCTAGTG
* * * * **
63018755 TAAGACGTGTCTGGGACATGCAT-TG-AGT-AAATTTCGTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCATTGAGA-TGAGTGCTAGTG
* * * * * *
63018799 TAAGACATGTATGGGACATGCATCAGCATGTATACACGAGAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCAT-T-GAGATGAGTGCTAGTG
* * *
63018847 TAAGACCATGTCTGGGACATTGACCTC-G-ATGGAGAT-A--GCCAGTG
1 TAAGA-CATGTCTGGGACA-TG-CATCGGCATTGAGATGAGTGCTAGTG
*
63018891 TAAGACCATGTCTGGGACATGGCAGCGGCA
1 TAAGA-CATGTCTGGGACAT-GCATCGGCA
63018921 ACTTAACCCA
Statistics
Matches: 297, Mismatches: 79, Indels: 47
0.70 0.19 0.11
Matches are distributed among these distances:
43 4 0.01
44 85 0.29
45 6 0.02
46 41 0.14
47 99 0.33
48 40 0.13
49 16 0.05
50 3 0.01
51 3 0.01
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGTGCTAGTG
Found at i:63018639 original size:94 final size:91
Alignment explanation
Indices: 63018475--63018825 Score: 386
Period size: 91 Copynumber: 3.8 Consensus size: 91
63018465 AGAGCCAATA
* * * * *
63018475 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGGGCTAGTGTAAGACATGTCTGGGAC
1 TAAGA-CATGTCTGGGACAT-GCAT-TG-AGTAAGTTGAGTGCTAGTGTAAGACATGTCTGGGAC
* * *
63018540 TTGCATCAGCCGT-G-TCATGATT-GCCCGTG
62 ATGCATCAGCC-TCGATGATG-TTAGCCAGTG
* *
63018569 TAAGACAACGTCTGGGACATGGCATTG-GCATAGAGGTGAGTGCTAGTGTAAGACATGTCTGGGA
1 TAAGAC-ATGTCTGGGACAT-GCATTGAG--TA-AGTTGAGTGCTAGTGTAAGACATGTCTGGGA
*
63018633 CATGCATCGGCCTCGATGATGTTAGCCAGTG
61 CATGCATCAGCCTCGATGATGTTAGCCAGTG
* * **
63018664 TAAGACGTGTTTGGGACATGCATTGAGTAAGTTTCGTGCTAGTGTAAGACATGTCTGGGACATGC
1 TAAGACATGTCTGGGACATGCATTGAGTAAGTTGAGTGCTAGTGTAAGACATGTCTGGGACATGC
*
63018729 ATCGGCCTCGATGATGTTAGCCAGTG
66 ATCAGCCTCGATGATGTTAGCCAGTG
* * ** *
63018755 TAAGACGTGTCTGGGACATGCATTGAGTAAATTTCGTGCTAGTGTAAGACATGTATGGGACATGC
1 TAAGACATGTCTGGGACATGCATTGAGTAAGTTGAGTGCTAGTGTAAGACATGTCTGGGACATGC
63018820 ATCAGC
66 ATCAGC
63018826 ATGTATACAC
Statistics
Matches: 229, Mismatches: 20, Indels: 19
0.85 0.07 0.07
Matches are distributed among these distances:
91 126 0.55
92 2 0.01
93 10 0.04
94 75 0.33
95 16 0.07
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (91 bp):
TAAGACATGTCTGGGACATGCATTGAGTAAGTTGAGTGCTAGTGTAAGACATGTCTGGGACATGC
ATCAGCCTCGATGATGTTAGCCAGTG
Found at i:63018723 original size:44 final size:44
Alignment explanation
Indices: 63018660--63018821 Score: 168
Period size: 44 Copynumber: 3.6 Consensus size: 44
63018650 GATGTTAGCC
* *
63018660 AGTGTAAGACGTGTTTGGGACATGCATTGAGTAAGTTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGAGTAAGTTTCGTGCT
* * * *
63018704 AGTGTAAGACATGTCTGGGACATGCATCG-GCCTCGATGATGTT--AGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGAG--T--AAG-T-TTCGTGCT
* *
63018751 AGTGTAAGACGTGTCTGGGACATGCATTGAGTAAATTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGAGTAAGTTTCGTGCT
*
63018795 AGTGTAAGACATGTATGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
63018822 CAGCATGTAT
Statistics
Matches: 95, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 54 0.57
45 1 0.01
46 1 0.01
47 31 0.33
48 2 0.02
49 2 0.02
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATTGAGTAAGTTTCGTGCT
Found at i:63018727 original size:91 final size:91
Alignment explanation
Indices: 63018516--63018822 Score: 415
Period size: 91 Copynumber: 3.3 Consensus size: 91
63018506 TGAGATGAGG
* * * * **
63018516 GCTAGTGTAAGACATGTCTGGGACTTGCATCAGCCGT-G-TCATGATT-GCCCGTGTAAGACAAC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGATGATG-TTAGCCAGTGTAAGAC-GT
* **
63018578 GTCTGGGACATGGCATTG-GCATAGAGGTGAGT
63 GTCTGGGACAT-GCATTGAG--TA-AGTTTCGT
*
63018610 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
63018675 TGGGACATGCATTGAGTAAGTTTCGT
66 TGGGACATGCATTGAGTAAGTTTCGT
63018701 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
*
63018766 TGGGACATGCATTGAGTAAATTTCGT
66 TGGGACATGCATTGAGTAAGTTTCGT
*
63018792 GCTAGTGTAAGACATGTATGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
63018823 AGCATGTATA
Statistics
Matches: 196, Mismatches: 13, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
91 124 0.63
92 2 0.01
93 7 0.04
94 47 0.24
95 16 0.08
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTGTC
TGGGACATGCATTGAGTAAGTTTCGT
Found at i:63022192 original size:49 final size:49
Alignment explanation
Indices: 63022116--63022303 Score: 189
Period size: 49 Copynumber: 3.8 Consensus size: 49
63022106 TAGCCGAAGC
*
63022116 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGGGGCTAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGGGGCTAAT
* * * * * *
63022165 AATCTGGTACACGTAGTAGCCTTCACTTAGTACTACACA-CGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGGGGCT-A-A-T
* * * * *
63022216 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGGCCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGGGGCTAAT
* * ** *
63022265 TACCCGGTACAGGTAGTAGCCTGCACTTAGTACTGCACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
63022304 CGTGACCTCA
Statistics
Matches: 110, Mismatches: 25, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
48 3 0.03
49 69 0.63
50 2 0.02
51 35 0.32
52 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGGGGCTAAT
Found at i:63022236 original size:100 final size:101
Alignment explanation
Indices: 63022121--63022317 Score: 306
Period size: 100 Copynumber: 2.0 Consensus size: 101
63022111 GAAGCTATCT
* * * *
63022121 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGGGGCTAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGGCCAATAACCCGGTACACGTAGTAGCC
*
63022186 TTCACTTAGTACTACACACGTGA-TCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGACTCACAGTTTTCG
* *
63022221 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGGCCAATTACCCGGTACAGGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGGCCAATAACCCGGTACACGTAGTAGCC
*
63022286 TGCACTTAGTACTGCACACGTGACCTCACAGT
66 TGCACTTAGTACTACACACGTGA-CTCACAGT
63022318 AGTTCATTTG
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
100 80 0.92
102 7 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (101 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGGCCAATAACCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTCACAGTTTTCG
Found at i:63027056 original size:78 final size:78
Alignment explanation
Indices: 63026927--63027082 Score: 303
Period size: 78 Copynumber: 2.0 Consensus size: 78
63026917 ACTTTCAACG
63026927 ACGATGCCATTTGTTTCCCTTAAAAATAGACTCAATAAGGAATCCATGCATGTAAGGTATGACTA
1 ACGATGCCATTTGTTTCCCTTAAAAATAGACTCAATAAGGAATCCATGCATGTAAGGTATGACTA
63026992 TTAATAATATTTT
66 TTAATAATATTTT
63027005 ACGATGCCATTTGTTTCCCTTAAAAATAGACTCAATAAGGAATCCATGCATGTAAGGTATGACTA
1 ACGATGCCATTTGTTTCCCTTAAAAATAGACTCAATAAGGAATCCATGCATGTAAGGTATGACTA
*
63027070 TTAATAATTTTTT
66 TTAATAATATTTT
63027083 TAAAATTTAT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.35
Consensus pattern (78 bp):
ACGATGCCATTTGTTTCCCTTAAAAATAGACTCAATAAGGAATCCATGCATGTAAGGTATGACTA
TTAATAATATTTT
Found at i:63027625 original size:49 final size:49
Alignment explanation
Indices: 63027551--63027738 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 49
63027541 GTAGCCGAAC
* * *
63027551 TATCTGGTACGCATAGTAACTTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
63027600 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * * * * *
63027651 TTTCGGGTACGCATAGTAGCCTACACTTAGTACTTCAAATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
63027700 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
63027739 CGTGACCTCA
Statistics
Matches: 111, Mismatches: 26, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 72 0.65
50 2 0.02
51 37 0.33
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:63027678 original size:100 final size:100
Alignment explanation
Indices: 63027556--63027743 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
63027546 CGAACTATCT
* * *
63027556 GGTACGCATAGTAACTTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAACCTACACTTAGTACTACAAATGCGACCAATAATCTGGTACACGTAGTAGCC
63027621 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
* * *
63027656 GGTACGCATAGTAGCCTACACTTAGTACTTCAAATGCGACCAATTATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAACCTACACTTAGTACTACAAATGCGACCAATAATCTGGTACACGTAGTAGCC
63027721 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
63027744 CCTCACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (100 bp):
GGTACGCATAGTAACCTACACTTAGTACTACAAATGCGACCAATAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:63030627 original size:13 final size:14
Alignment explanation
Indices: 63030608--63030640 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
63030598 TTAAATGGGC
63030608 ATTAAATGGATTTT
1 ATTAAATGGATTTT
*
63030622 -TTAAATGGTTTTT
1 ATTAAATGGATTTT
63030635 ATTAAA
1 ATTAAA
63030641 AGTTAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (14 bp):
ATTAAATGGATTTT
Found at i:63031848 original size:21 final size:21
Alignment explanation
Indices: 63031818--63031906 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
63031808 CTCACAAAGA
* *
63031818 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
63031838 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
63031859 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
63031880 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
63031904 AAA
1 AAA
63031907 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:63031899 original size:24 final size:21
Alignment explanation
Indices: 63031818--63031886 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
63031808 CTCACAAAGA
* * *
63031818 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
63031838 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
63031859 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
63031880 AAAAAGA
1 AAAAAGA
63031887 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:63037735 original size:18 final size:18
Alignment explanation
Indices: 63037714--63037782 Score: 50
Period size: 18 Copynumber: 3.8 Consensus size: 18
63037704 TATATATGAA
63037714 TATAAAAAAATAAATATG
1 TATAAAAAAATAAATATG
* * * *
63037732 TATATAAAAACAACACATA
1 TATAAAAAAATAA-ATATG
* * *
63037751 TATATAAAAATAATTACAG
1 TATAAAAAAATAAATA-TG
63037770 -ATAAAAAAATAAA
1 TATAAAAAAATAAA
63037783 AATAATTACA
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
18 23 0.61
19 15 0.39
ACGTcount: A:0.67, C:0.06, G:0.03, T:0.25
Consensus pattern (18 bp):
TATAAAAAAATAAATATG
Found at i:63039266 original size:44 final size:44
Alignment explanation
Indices: 63039212--63040165 Score: 367
Period size: 44 Copynumber: 22.0 Consensus size: 44
63039202 AAGAACTAGT
* * * *
63039212 GCTTCAATCTACTCCTCTGCAACTTCAGGGAGATAGGATTATCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* * * *
63039256 GCTTTAATCTACTCCACTGCAACCTCAGGGAGATAAGATTTTCCA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAT-CG
* * * * * **
63039301 TCTTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAAGACTTGTTT
1 GCTTTAATCTGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTATCG
* * * *
63039346 AC-TTAGTCTGCTCCACTGCCACTTCAGGGAGATAAGACTA---
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* *** * * * *
63039386 GATGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCCA-AG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATCG
** *
63039429 ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* *
63039473 GCTTTAATCTGCTCCACTACAACTTCAGGGAGATAATATT-T-G
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* * * * *
63039515 CCATCTTCAGTCTGC-CTCACTGCAAATTTA-GGAGGATAAGACT-T--
1 GC-T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTATCG
* *
63039559 GCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA---
1 GC-T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* *** * * ** *
63039603 GATGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGACCCA-AG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTATCG
* * *
63039646 GTTTTAATCCT-CTCCACTGCAACTTCAGGGAGATAGGATTATCA
1 GCTTTAAT-CTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
*
63039690 GCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATT-T-G
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* * * *
63039732 CCATCTTCATTCTGC-CTCACTGCAACTTTA-GGAGGATAAGACT-T--
1 GC-T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGATTATCG
* * *
63039776 GCTTACTTAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTA---
1 GC-T--TTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* *** * * * ** * *
63039820 GATGCGATCTGCT-CTCTACAATTTCAAAGAGATAAGATCCA-AG
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATCG
* * * **
63039863 GTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
63039907 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-T-G
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* * * * * * **
63039949 CCATCTTCAGTCTGC-CTGATTGCAACTTCA-GAAGGATAAGACTTGTTT
1 GC-T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTATCG
* * * *
63039997 AC-TTAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTA---
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* *** * * * *
63040037 GATGCGATCTGCT-CTCTGCAACTTC-GAAGAGATAAGATCCA-AG
1 GCTTTAATCTGCTCCACTGCAACTTCAG-GGAGATAAGAT-TATCG
* * ** * *
63040080 GTTTTAATCCGCTCCACTGCAACTTCAAAGAGATAGGATTATCA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
* * * *
63040124 GCTTTAATATGCTCCACTACAACTTTAGGAAGATAAGATTAT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTAT
63040166 TGGCCACCGA
Statistics
Matches: 686, Mismatches: 164, Indels: 120
0.71 0.17 0.12
Matches are distributed among these distances:
39 1 0.00
40 81 0.12
41 28 0.04
42 4 0.01
43 46 0.07
44 394 0.57
45 125 0.18
46 5 0.01
47 1 0.00
48 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (44 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCG
Found at i:63039567 original size:217 final size:217
Alignment explanation
Indices: 63039217--63040163 Score: 1529
Period size: 217 Copynumber: 4.4 Consensus size: 217
63039207 CTAGTGCTTC
* * * * * *
63039217 AATCTACTCCTCTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCACTGCAACCTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTC
* * *
63039282 AGGGAGATAAGATTTTCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGTTTA
66 AGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTA
*
63039347 CTTAGTCTGCTCCACTGCCACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
131 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
*
63039412 GAGAGATAAGATCCAAGATTTT
196 GAGAGATAAGATCCAAGGTTTT
*
63039434 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTACAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTC
* * *
63039499 AGGGAGATAATATTTGCCATCTTCAGTCTGCCTCACTGCAAATTTAGGAGGATAAGACTTGCTTA
66 AGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTA
63039564 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
131 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
*
63039629 GAGAGATAAGACCCAAGGTTTT
196 GAGAGATAAGATCCAAGGTTTT
63039651 AATCCT-CTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTACAACTT
1 AAT-CTGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTACAACTT
* *
63039715 CAGGGAGATAAGATTTGCCATCTTCATTCTGCCTCACTGCAACTTTAGGAGGATAAGACTTGCTT
65 CAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTT
* * *
63039780 ACTTAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAATTTC
130 ACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTC
*
63039845 AAAGAGATAAGATCCAAGGTTTT
195 AGAGAGATAAGATCCAAGGTTTT
* ** *
63039868 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTTGCTTTAATCTGCTCCACTGCAACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTC
* * * *
63039933 AGGGAGATAAGATTTGCCATCTTCAGTCTGCCTGATTGCAACTTCAGAAGGATAAGACTTGTTTA
66 AGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTA
*
63039998 CTTAGTCTGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTC-
131 CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
63040062 GAAGAGATAAGATCCAAGGTTTT
196 G-AGAGATAAGATCCAAGGTTTT
* ** * *
63040085 AATCCGCTCCACTGCAACTTCAAAGAGATAGGATTATCAGCTTTAATATGCTCCACTACAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTC
*
63040150 AGGAAGATAAGATT
66 AGGGAGATAAGATT
63040164 ATTGGCCACC
Statistics
Matches: 681, Mismatches: 46, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
216 1 0.00
217 678 1.00
218 2 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (217 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTACAACTTC
AGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTA
CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCA
GAGAGATAAGATCCAAGGTTTT
Found at i:63040977 original size:24 final size:28
Alignment explanation
Indices: 63040950--63041004 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
63040940 AGTGTTTTGA
63040950 AAAGAA-AAAGTA-TT-CAAGAAC-AAC
1 AAAGAATAAAGTATTTACAAGAACAAAC
*
63040974 AAAGAATGAAGTATTTACAAGAACAAAC
1 AAAGAATAAAGTATTTACAAGAACAAAC
63041002 AAA
1 AAA
63041005 CTTGGTACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.23
25 5 0.19
26 2 0.08
27 7 0.27
28 6 0.23
ACGTcount: A:0.62, C:0.11, G:0.13, T:0.15
Consensus pattern (28 bp):
AAAGAATAAAGTATTTACAAGAACAAAC
Found at i:63045740 original size:23 final size:23
Alignment explanation
Indices: 63045714--63045812 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
63045704 ATAAGTGCCA
*
63045714 CACTGATATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
63045737 CACTGTTATGTAGCCGAAGTTAC
1 CACTGATATGTAGCCGAAGCTAC
*
63045760 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
63045783 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
63045806 CAGTGAT
1 CACTGAT
63045813 CAATAACACC
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 68 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:63052119 original size:23 final size:23
Alignment explanation
Indices: 63052093--63052140 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
63052083 ATAAGTGCCA
63052093 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
**
63052116 CACTGTTATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
63052139 CA
1 CA
63052141 GTGATCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:63062232 original size:3 final size:3
Alignment explanation
Indices: 63062224--63062248 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
63062214 AGTAAAAAAC
63062224 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
63062249 GGAAATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:63064026 original size:44 final size:45
Alignment explanation
Indices: 63063875--63064033 Score: 130
Period size: 44 Copynumber: 3.6 Consensus size: 45
63063865 CTCTAATCCA
* * * * **
63063875 CTCCACTACAACTTCAGGGAGATAGGAT-TATCGGCTTCA-ATTTG
1 CTCCACTGCAACCTCAGGGAGATAAGATCTGTCATCTT-AGATTTG
* * * *
63063919 CTCCACTGCAACCTCAGGGAGATAAAATTTGTCATCTTCGATCTG
1 CTCCACTGCAACCTCAGGGAGATAAGATCTGTCATCTTAGATTTG
* ** * *
63063964 CTCCACTAC-TGCTTAGGGAGATAAGATCTG-CTTCTTTAG-TTTG
1 CTCCACTGCAACCTCAGGGAGATAAGATCTGTCATC-TTAGATTTG
63064007 CTCCACTGCAACCTCAGGGAGATAAGA
1 CTCCACTGCAACCTCAGGGAGATAAGA
63064034 CCTGATGCGA
Statistics
Matches: 89, Mismatches: 22, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
43 14 0.16
44 57 0.64
45 18 0.20
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (45 bp):
CTCCACTGCAACCTCAGGGAGATAAGATCTGTCATCTTAGATTTG
Found at i:63064231 original size:217 final size:217
Alignment explanation
Indices: 63063794--63064232 Score: 454
Period size: 217 Copynumber: 2.0 Consensus size: 217
63063784 AGTCTGCCTG
* * * *
63063794 ACTGTAACTTCAGGGAGATAAGACCTGATGCGATCCTCTCTACTGCAACTTTAGAGAGATAAGAT
1 ACTGCAACCTCAGGGAGATAAGACCTGATGCGATCCTCTCAACTGCAACTTCAGAGAGATAAGAT
* * * *
63063859 CTATTACTCTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATCGGCTTCAATTTGCTCCA
66 CCATGACTCTAATCCACTCCACTACAACTTCAGGGAAATAGGATTATCGGCTTCAATCTGCTCCA
* * * * * *
63063924 CTGCAACCTCAGGGAGATAAAATTTGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
131 CTGCAACCTCAAGGAGATAAAACTTGTCATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
* * * * *
63063989 ATCTGCTTCTTTAGTTTGCTCC
196 ATCTGCATCTTCAATCTACTCC
63064011 ACTGCAACCTCAGGGAGATAAGACCTGATGCGAT-CTACTCAACTGCAACTTCAGAGAGATAAGA
1 ACTGCAACCTCAGGGAGATAAGACCTGATGCGATCCT-CTCAACTGCAACTTCAGAGAGATAAGA
* ** * * * * ** **
63064075 TCCGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAAATATGATTGGT-TTCTTCTGTCTGCTC
65 TCCATGACTCTAATCCACTCCACTACAACTTCAGGGAAATAGGATT-ATCGGCTTCAATCTGCTC
* * * * * * *
63064139 CACTGCAACTTCAAGGAGATAAGACTTG-CTTCTTCAACCTATTCTACTATTGAC-CAGGGGGAT
129 CACTGCAACCTCAAGGAGATAAAACTTGTCATCTTCAACCTACTCCACTACTG-CTCAGGGAGAT
* * *
63064202 AGGATTTGCAATCTTCAATCTATTCC
193 AAGATCTGC-ATCTTCAATCTACTCC
63064228 ACTGC
1 ACTGC
63064233 TGACCAGGGA
Statistics
Matches: 178, Mismatches: 40, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
216 33 0.19
217 144 0.81
218 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (217 bp):
ACTGCAACCTCAGGGAGATAAGACCTGATGCGATCCTCTCAACTGCAACTTCAGAGAGATAAGAT
CCATGACTCTAATCCACTCCACTACAACTTCAGGGAAATAGGATTATCGGCTTCAATCTGCTCCA
CTGCAACCTCAAGGAGATAAAACTTGTCATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAG
ATCTGCATCTTCAATCTACTCC
Found at i:63064564 original size:128 final size:128
Alignment explanation
Indices: 63064221--63065270 Score: 1595
Period size: 128 Copynumber: 8.2 Consensus size: 128
63064211 AATCTTCAAT
* *
63064221 CTATTCCACTGCTGACCAGGGAGATAGAACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
1 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
* * * **
63064286 AAGATTCGCCATCTTCGATCTGCTCTGCTACTGCTTAGGGAGACAAGATCTGTAATTTCTGAC
66 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAAC
* * *
63064349 TTATTCCACTACTGACAAGGGAGAT-GGACTTGTGCCTTAAATCTGCTTCCTTACTCTTGAAGAT
1 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
** *
63064413 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAAAGAGACAAGATCTGCAATTTCCAAC
66 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAAC
*
63064476 CCATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
1 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
** *
63064541 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAAAGAGACAAGATCTGCAATTTCCAAC
66 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAAC
*
63064604 CCATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
1 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
* * * * ***
63064669 AAGATTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAAGAACTGTAATTTTTGAC
66 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAAC
*
63064732 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCTTGAAGAT
1 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
*
63064797 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATTTGTAATTTCCAAC
66 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAAC
* *
63064860 CTATTCCACTACTGACTAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCATTACTCTTGAAGAT
1 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
* * * *
63064925 AAGATTCACCGTCTTCAATCTGCTCCGCTACT-CCATAGGGAGGCAAGATCTATAATTTCCAAC
66 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCC-TAGGGAGACAAGATCTGTAATTTCCAAC
* *
63064988 CTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTACTTCCTTACTCTTGAAGAT
1 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
* * * * * *
63065053 AAGATTTG-CATCTTCGATCGGCTCCGCTACAGCTTAGGGAGACAAGATCTGTAATTTCTAAC
66 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAAC
* * *
63065115 CTATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTCCTTCCTTACTCTTGAAAAT
1 CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
* * * **
63065180 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAAGGAAACAAGATCTGTAATTTATAAC
66 AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAAC
* *
63065243 AC-ATTCCACTGCTGACTAGGGAGATAGG
1 -CTATTCCACTACTGACCAGGGAGATAGG
63065271 CTAGTATCTT
Statistics
Matches: 848, Mismatches: 69, Indels: 10
0.91 0.07 0.01
Matches are distributed among these distances:
127 230 0.27
128 617 0.73
129 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (128 bp):
CTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGAT
AAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATCTGTAATTTCCAAC
Found at i:63064739 original size:383 final size:384
Alignment explanation
Indices: 63064223--63065270 Score: 1715
Period size: 383 Copynumber: 2.7 Consensus size: 384
63064213 TCTTCAATCT
*
63064223 ATTCCACTGCTGACCAGGGAGATAGAACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAA
1 ATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAA
* *
63064288 GATTCGCCATCTTCGATCTGCTCTGCTACTGCTTAGGGAGACAAGATCTGTAATTTCTGACTTAT
66 GATTCGCCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCTGACCTAT
* *
63064353 TCCACTACTGACAAGGGAGAT-GGACTTGTGCCTTAAATCTGCTTCCTTACTCTTGAAGATAAGA
131 TCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGA
* *
63064417 TTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAAAGAGACAAGATCTGCAATTTCCAACCCATTC
196 TTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAAGGAGACAAGATCTGTAATTTCCAACCCATTC
* *
63064482 CACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGATT
261 CACTACTGACTAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCATTACTCTTGAAGATAAGATT
* * *
63064547 CGCCGTCTTCGATCTGCTCCGCTACTGCC-TAAAGAGACAAGATCTGCAATTTCCAACCC
326 CACCGTCTTCAATCTGCTCCGCTACT-CCATAAAGAGACAAGATCTACAATTTCCAACCC
*
63064606 ATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAA
1 ATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAA
* * *
63064671 GATTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAAGAACTGTAATTTTTGACCTAT
66 GATTCGCCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCTGACCTAT
*
63064736 TCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGTTTCCTTACTCTTGAAGATAAGA
131 TCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGA
* * *
63064801 TTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAGGGAGACAAGATTTGTAATTTCCAACCTATTC
196 TTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAAGGAGACAAGATCTGTAATTTCCAACCCATTC
63064866 CACTACTGACTAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCATTACTCTTGAAGATAAGATT
261 CACTACTGACTAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCATTACTCTTGAAGATAAGATT
** * * *
63064931 CACCGTCTTCAATCTGCTCCGCTACTCCATAGGGAGGCAAGATCTATAATTTCCAACCT
326 CACCGTCTTCAATCTGCTCCGCTACTCCATAAAGAGACAAGATCTACAATTTCCAACCC
*
63064990 ATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTACTTCCTTACTCTTGAAGATAA
1 ATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAA
* * * *
63065055 GATTTG-CATCTTCGATCGGCTCCGCTACAGCTTAGGGAGACAAGATCTGTAATTTCTAACCTAT
66 GATTCGCCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCTGACCTAT
* * *
63065119 TCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTCCTTCCTTACTCTTGAAAATAAGA
131 TCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGA
* * ** *
63065184 TTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAAGGAAACAAGATCTGTAATTTATAACACATTC
196 TTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAAGGAGACAAGATCTGTAATTTCCAACCCATTC
*
63065249 CACTGCTGACTAGGGAGATAGG
261 CACTACTGACTAGGGAGATAGG
63065271 CTAGTATCTT
Statistics
Matches: 616, Mismatches: 47, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
383 336 0.55
384 280 0.45
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (384 bp):
ATTCCACTGCTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAA
GATTCGCCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCTGACCTAT
TCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCTTACTCTTGAAGATAAGA
TTCGCCGTCTTCGATCTGCTCCGCTACTGCCTAAGGAGACAAGATCTGTAATTTCCAACCCATTC
CACTACTGACTAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCATTACTCTTGAAGATAAGATT
CACCGTCTTCAATCTGCTCCGCTACTCCATAAAGAGACAAGATCTACAATTTCCAACCC
Found at i:63066652 original size:13 final size:13
Alignment explanation
Indices: 63066634--63066660 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63066624 TTAGCCTCTC
63066634 CATTTTCATTTTT
1 CATTTTCATTTTT
63066647 CATTTTCATTTTT
1 CATTTTCATTTTT
63066660 C
1 C
63066661 CATTCTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.67
Consensus pattern (13 bp):
CATTTTCATTTTT
Found at i:63067713 original size:20 final size:19
Alignment explanation
Indices: 63067669--63067715 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
63067659 GTTACTTACA
*
63067669 ATTTTTATTTATTTTCTAC
1 ATTTATATTTATTTTCTAC
*
63067688 -TGTTATATTTATTTTTTATC
1 AT-TTATATTTATTTTCTA-C
63067708 ATTTATAT
1 ATTTATAT
63067716 ACATACGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 1 0.04
19 14 0.61
20 7 0.30
21 1 0.04
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.68
Consensus pattern (19 bp):
ATTTATATTTATTTTCTAC
Found at i:63068971 original size:19 final size:20
Alignment explanation
Indices: 63068930--63068971 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
63068920 ATTTCTATGC
* *
63068930 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
63068950 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
63068969 CAT
1 CAT
63068972 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:63074410 original size:17 final size:17
Alignment explanation
Indices: 63074369--63074410 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
63074359 CATATTTCCC
63074369 AAAAAAAAGATGGCGCA
1 AAAAAAAAGATGGCGCA
*
63074386 AAAGAAAAGATGGCGCA
1 AAAAAAAAGATGGCGCA
63074403 AAAAAAAA
1 AAAAAAAA
63074411 CTCTACTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.64, C:0.10, G:0.21, T:0.05
Consensus pattern (17 bp):
AAAAAAAAGATGGCGCA
Found at i:63076160 original size:88 final size:88
Alignment explanation
Indices: 63076011--63076851 Score: 1252
Period size: 88 Copynumber: 9.6 Consensus size: 88
63076001 GTGAAGATAA
*
63076011 CAGATCTTGCCTTCCTGCACCGACAGCGAAACAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
63076076 GCAGCAGAGCAGTTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
63076099 CAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATCGAAGACACTAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
63076164 CCAGCGGAGCAAGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* *
63076187 CAGATCTTGCCTTCCTGCACCGATAGCGAAGTAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * * *
63076252 GCAGTGAAGTAGGTTAAAAATAA
66 GCAGCGGAGCAGGTTAAAAATAG
* *
63076275 CAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCTTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
63076340 GCAGCGGAGCAGGTTAAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* *
63076363 CAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * * *
63076428 GTAGTGGAGTAGGTTACAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * * * * ** *
63076451 CAGATATTGTCTTCCTACACTGACAGCGAAGCAGATCAAAGATGCCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
63076516 GCAGCGGAGCAGGTTTAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
* * *
63076539 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAACCTTGCTTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
*
63076604 GCAGCGGAGCAGGTTTAAAATAG
66 GCAGCGGAGCAGGTTAAAAATAG
*
63076627 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* * *
63076692 GCAGTGGAGCAGGTTAGAAATAA
66 GCAGCGGAGCAGGTTAAAAATAG
* * * *
63076715 CAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCAAAGACACCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
* *
63076780 GCAGCGGAGCAGGTTTAAAATGG
66 GCAGCGGAGCAGGTTAAAAATAG
* *
63076803 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAAATCGATGAC-CCAGCC
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
63076852 CTATCTCCCT
Statistics
Matches: 680, Mismatches: 73, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
87 5 0.01
88 675 0.99
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGTTAAAAATAG
Found at i:63076240 original size:44 final size:44
Alignment explanation
Indices: 63076016--63076423 Score: 141
Period size: 44 Copynumber: 9.3 Consensus size: 44
63076006 GATAACAGAT
* **
63076016 CTTGCCTTCCTGCACCGACAGCGAAACAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGTAGATCGAAGACACCAGC
* ** * * * ** * * * *
63076060 CTTGCCTCCCTGGGTTG-CAGC-AGAGCAGTTTAAAAATAGCAGAT
1 CTTGCCTTCCTGCATCGACAGCGA-AGTAGATCGAAGACACCAG-C
* * *
63076104 CTTGCCTTCCTGCACCGACAGCGAAGTAGATCGAAGACACTAAC
1 CTTGCCTTCCTGCATCGACAGCGAAGTAGATCGAAGACACCAGC
* ** * * ** * * * *
63076148 CTTGCCTCCCTGGGTTC--CAGCGGAGCA-AGTTAAAAATAGCAGAT
1 CTTGCCTTCCT-GCATCGACAGCGAAGTAGA-TCGAAGACACCAG-C
* *
63076192 CTTGCCTTCCTGCACCGATAGCGAAGTAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGTAGATCGAAGACACCAGC
* ** * * * ** * * * *
63076236 CTTGCCTCCCTGGGTTG-CAGTGAAGTAGGTTAAAAATAACAGAT
1 CTTGCCTTCCTGCATCGACAGCGAAGTAGATCGAAGACACCAG-C
*
63076280 CTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGTAGATCGAAGACACCAGC
** * * * * ** * * * *
63076324 CTTGCC-TCCTTGGGTTG-CAGCGGAGCAGGTTAAAAATAGCAGAT
1 CTTGCCTTCC-TGCATCGACAGCGAAGTAGATCGAAGACACCAG-C
* *
63076368 CTTGCCTTCCTGCA-CTGACAGCGAAGCAGATCGAAGACACCAGT
1 CTTGCCTTCCTGCATC-GACAGCGAAGTAGATCGAAGACACCAGC
*
63076412 CTTGCCTCCCTG
1 CTTGCCTTCCTG
63076424 GGTTGTAGTG
Statistics
Matches: 243, Mismatches: 104, Indels: 34
0.64 0.27 0.09
Matches are distributed among these distances:
42 2 0.01
43 70 0.29
44 100 0.41
45 69 0.28
46 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.21
Consensus pattern (44 bp):
CTTGCCTTCCTGCATCGACAGCGAAGTAGATCGAAGACACCAGC
Found at i:63076968 original size:44 final size:44
Alignment explanation
Indices: 63076920--63077003 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
63076910 AGCAGTGGAA
** *
63076920 TAGGTTAAAAATTGTGA-ATCATGTCTCCCTGAGCAGTAGTAGAG
1 TAGGTTAAAAATT-ACATATCATGTCTCCCTAAGCAGTAGTAGAG
* *
63076964 TAGGTTGAAAATTACATATCTTGTCTCCCTAAGCAGTAGT
1 TAGGTTAAAAATTACATATCATGTCTCCCTAAGCAGTAGT
63077004 GGAGCAGATC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.03
44 33 0.97
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.32
Consensus pattern (44 bp):
TAGGTTAAAAATTACATATCATGTCTCCCTAAGCAGTAGTAGAG
Found at i:63077079 original size:44 final size:44
Alignment explanation
Indices: 63077028--63077121 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 44
63077018 TCCCTAGCCT
* *
63077028 TATCTCCCTTGTCAGCAGTGGAATAGGTTGAAGATT-ATGAATCC
1 TATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGA-GAATCC
*
63077072 TATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGAGAATCT
1 TATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGAGAATCC
63077116 TATCTC
1 TATCTC
63077122 TCTGAAGTTG
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 45 0.98
45 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGAGGAATAGGTTGAAGATTGAGAATCC
Found at i:63077349 original size:44 final size:44
Alignment explanation
Indices: 63077244--63077355 Score: 120
Period size: 44 Copynumber: 2.5 Consensus size: 44
63077234 GCATCTGGCT
* * * * *
63077244 TATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAAGAAAGTCT
1 TATCTCCCTAAAGTTGTAGTGGAGCAGACTGAATAACAAAGTCC
* *
63077288 TATCCCCCTGAAA-TTGTAGTGGGGCAGACTGAATGAACAAA-TCC
1 TATCTCCCT-AAAGTTGTAGTGGAGCAGACTGAAT-AACAAAGTCC
*
63077332 TATCTCCATAAAGTTGTAGTGGAG
1 TATCTCCCTAAAGTTGTAGTGGAG
63077356 TGGATTAGAA
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
43 3 0.05
44 45 0.82
45 7 0.13
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
TATCTCCCTAAAGTTGTAGTGGAGCAGACTGAATAACAAAGTCC
Found at i:63079450 original size:19 final size:20
Alignment explanation
Indices: 63079409--63079450 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
63079399 ATTTCTATGC
* *
63079409 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
63079429 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
63079448 CAT
1 CAT
63079451 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:63085435 original size:3 final size:3
Alignment explanation
Indices: 63085427--63085457 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
63085417 AGTAAAAAAC
63085427 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
63085458 GGAAATATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:63086615 original size:13 final size:13
Alignment explanation
Indices: 63086590--63086633 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
63086580 TCCGCTAGTT
63086590 TAGGCTAGTTGGGC
1 TAGGCT-GTTGGGC
*
63086604 TAGGGTGTTGGGC
1 TAGGCTGTTGGGC
63086617 TTAGGCTGATTGGGC
1 -TAGGCTG-TTGGGC
63086632 TA
1 TA
63086634 ATTGGGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 7 0.27
14 13 0.50
15 6 0.23
ACGTcount: A:0.14, C:0.11, G:0.43, T:0.32
Consensus pattern (13 bp):
TAGGCTGTTGGGC
Found at i:63088951 original size:40 final size:40
Alignment explanation
Indices: 63088903--63089210 Score: 544
Period size: 40 Copynumber: 7.7 Consensus size: 40
63088893 GCAAACACAT
* * *
63088903 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63088943 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63088983 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63089023 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63089063 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63089103 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
63089143 TTGCCTTCGGGTCCTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
63089183 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
63089211 TCCAATGCTC
Statistics
Matches: 260, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:63097546 original size:35 final size:37
Alignment explanation
Indices: 63097501--63097577 Score: 113
Period size: 35 Copynumber: 2.1 Consensus size: 37
63097491 CTGACCTTTA
*
63097501 AAAAAGGTTGGGATAGA-GTCGTCTAAGGCAA-CCTT
1 AAAAAGGTTGGGATAGACCTCGTCTAAGGCAAGCCTT
* *
63097536 AAAAAGGTTGGGATAGACCTTGTCTAAGGCAAGCTTT
1 AAAAAGGTTGGGATAGACCTCGTCTAAGGCAAGCCTT
63097573 AAAAA
1 AAAAA
63097578 AGTTTGTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 17 0.46
36 12 0.32
37 8 0.22
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (37 bp):
AAAAAGGTTGGGATAGACCTCGTCTAAGGCAAGCCTT
Found at i:63100622 original size:26 final size:26
Alignment explanation
Indices: 63100590--63100645 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
63100580 CCATATTTCA
63100590 TCATAAAATTTAAGAAGCAACCTCAT
1 TCATAAAATTTAAGAAGCAACCTCAT
*
63100616 TCATAAACTTTAAGAAGCAACCTCAT
1 TCATAAAATTTAAGAAGCAACCTCAT
63100642 TCAT
1 TCAT
63100646 CAATTGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (26 bp):
TCATAAAATTTAAGAAGCAACCTCAT
Found at i:63106250 original size:22 final size:22
Alignment explanation
Indices: 63106222--63106269 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
63106212 CAACCTTAAA
63106222 AAGGTTGGGATAAATCTTGTCT
1 AAGGTTGGGATAAATCTTGTCT
63106244 AAGGTTGGGATAAATCTTGTCT
1 AAGGTTGGGATAAATCTTGTCT
63106266 AAGG
1 AAGG
63106270 AAACTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.33
Consensus pattern (22 bp):
AAGGTTGGGATAAATCTTGTCT
Found at i:63106382 original size:74 final size:72
Alignment explanation
Indices: 63106244--63106701 Score: 432
Period size: 74 Copynumber: 6.3 Consensus size: 72
63106234 AATCTTGTCT
* * * * *
63106244 AAGGTTGGGATAAATCTTGTCTAAGGAAACTTTTAAAAAAAGTTGGGATAGACCTTGTCAAAGGC
1 AAGGTTGGGATAGACCTTGTCTAAGGAAACCTTT-AAAAAAGTTGGGATAGACC-CGTCTAAGGC
63106309 AACCTTAAA
64 AACCTTAAA
** * *
63106318 AATATTGGGATAGACCTTGTTTAAGGAAACCTTTAAAAAAAGGTTAGGATAGACCCGTCTAAGGC
1 AAGGTTGGGATAGACCTTGTCTAAGGAAACCTTT-AAAAAA-GTTGGGATAGACCCGTCTAAGGC
63106383 AACCTTAAA
64 AACCTTAAA
* * *
63106392 AAGGTTGGGATAGACCTTGTCTAAGGCAA-CTTATAAAAAAAGTTGGGATAGACCTTGTCTAAAG
1 AAGGTTGGGATAGACCTTGTCTAAGGAAACCTT-T-AAAAAAGTTGGGATAGACC-CGTCTAAGG
*
63106456 TAACCTTAAA
63 CAACCTTAAA
* * * *
63106466 AATGTTGGGATAAATCTTAG-CTACA--ACAACCTTTAAAAAAGGTTGGGATAAACCCGTCTAAG
1 AAGGTTGGGATAGACCTT-GTCTA-AGGA-AACCTTTAAAAAA-GTTGGGATAGACCCGTCTAAG
63106528 GCAACCTTTAAA
62 GCAACC-TTAAA
* ** * *
63106540 AACGATTGGGATAGACC-CATCTAAGGCAACC-TTAAAAAAGTTGGGATAGACACGTCTAAGGCA
1 AA-GGTTGGGATAGACCTTGTCTAAGGAAACCTTTAAAAAAGTTGGGATAGACCCGTCTAAGGCA
*
63106603 ACCCTAAA
65 ACCTTAAA
* * * * **
63106611 AAGGTT-AGAGTAGACC-TGTCTAAGGAAACC-CTAAAAAGGTTGGGGTAGACCTATCTAAGGCA
1 AAGGTTGGGA-TAGACCTTGTCTAAGGAAACCTTTAAAAAAGTTGGGATAGACCCGTCTAAGGCA
*
63106673 AACTTAAA
65 ACCTTAAA
* *
63106681 AA-GTTAGGATAGATCTTGTCT
1 AAGGTTGGGATAGACCTTGTCT
63106702 CAGGTCCCAT
Statistics
Matches: 318, Mismatches: 50, Indels: 36
0.79 0.12 0.09
Matches are distributed among these distances:
69 10 0.03
70 61 0.19
71 6 0.02
72 25 0.08
73 41 0.13
74 148 0.47
75 27 0.08
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (72 bp):
AAGGTTGGGATAGACCTTGTCTAAGGAAACCTTTAAAAAAGTTGGGATAGACCCGTCTAAGGCAA
CCTTAAA
Found at i:63106403 original size:35 final size:35
Alignment explanation
Indices: 63106244--63106693 Score: 370
Period size: 35 Copynumber: 12.4 Consensus size: 35
63106234 AATCTTGTCT
* * * *
63106244 AAGGTTGGGATAAATCTTGTCTAAGGAAACTTTTAAAA
1 AAGGTTGGGATAGA-CCTGTCTAAGGCAAC-CTT-AAA
* *
63106282 AAAGTTGGGATAGACCTTGTCAAAGGCAACCTTAAA
1 AAGGTTGGGATAGACC-TGTCTAAGGCAACCTTAAA
** * *
63106318 AATATTGGGATAGACCTTGTTTAAGGAAACCTTTAAAAA
1 AAGGTTGGGATAGACC-TGTCTAAGGCAACC-TT--AAA
* *
63106357 AAGGTTAGGATAGACCCGTCTAAGGCAACCTTAAA
1 AAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAA
*
63106392 AAGGTTGGGATAGACCTTGTCTAAGGCAACTTATAAAA
1 AAGGTTGGGATAGACC-TGTCTAAGGCAACCT-T-AAA
* * *
63106430 AAAGTTGGGATAGACCTTGTCTAAAGTAACCTTAAA
1 AAGGTTGGGATAGACC-TGTCTAAGGCAACCTTAAA
* * * *
63106466 AATGTTGGGATAAATCT-TAGCTACA-ACAACCTTTAAAA
1 AAGGTTGGGATAGACCTGT--CTA-AGGCAACC-TT-AAA
* *
63106504 AAGGTTGGGATAAACCCGTCTAAGGCAACCTTTAAA
1 AAGGTTGGGATAGACCTGTCTAAGGCAACC-TTAAA
* **
63106540 AACGATTGGGATAGACCCATCTAAGGCAACCTTAAA
1 AA-GGTTGGGATAGACCTGTCTAAGGCAACCTTAAA
* *
63106576 AAAGTTGGGATAGACAC-GTCTAAGGCAACCCTAAA
1 AAGGTTGGGATAGAC-CTGTCTAAGGCAACCTTAAA
* * *
63106611 AAGGTT-AGAGTAGACCTGTCTAAGGAAACCCTAAA
1 AAGGTTGGGA-TAGACCTGTCTAAGGCAACCTTAAA
* * *
63106646 AAGGTTGGGGTAGACCTATCTAAGGCAAACTTAAA
1 AAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAA
*
63106681 AA-GTTAGGATAGA
1 AAGGTTGGGATAGA
63106694 TCTTGTCTCA
Statistics
Matches: 342, Mismatches: 51, Indels: 42
0.79 0.12 0.10
Matches are distributed among these distances:
34 13 0.04
35 102 0.30
36 80 0.23
37 48 0.14
38 82 0.24
39 17 0.05
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (35 bp):
AAGGTTGGGATAGACCTGTCTAAGGCAACCTTAAA
Found at i:63106822 original size:13 final size:13
Alignment explanation
Indices: 63106804--63106840 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
63106794 AGTTTGAAAT
63106804 GATATTAATTAAA
1 GATATTAATTAAA
63106817 GATATTAATTAAA
1 GATATTAATTAAA
63106830 GAT-TTAATTAA
1 GATATTAATTAA
63106841 TATAAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 8 0.33
13 16 0.67
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (13 bp):
GATATTAATTAAA
Found at i:63109181 original size:126 final size:130
Alignment explanation
Indices: 63108956--63109481 Score: 521
Period size: 140 Copynumber: 3.9 Consensus size: 130
63108946 GTTTCCTTAA
* *
63108956 GCATAGTGTTGGACAAAGCCAACTCTTATTTAAGTATTGCCA-TAGACATGCATATCTCAACCCT
1 GCATAGTGTTGGACAAAG-CAACTCTTATTTAAGCATTGCCATTAGACATGCATATCCCAACCCT
* * *
63109020 TATACAAAGAGTTGACCAAAGCGTATGTCGTCAAGTCTATCCCAAAACTTAGGAAA-G-T-A-TC
65 TATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAAGGCTAAGTC
63109081 G
130 G
* * *
63109082 GCATAGTGTTGGACAAAGTCGACTTTTATTTAAGCATTG-CATTAGGCATGCATATCCCAACCCT
1 GCATAGTGTTGGACAAAG-CAACTCTTATTTAAGCATTGCCATTAGACATGCATATCCCAACCCT
* * *
63109146 TATACAAAGAGTTGGCCAAAGTGTATTTCGACAAGTCTATCCCAACAGTTAGGAAAGTGTCGGCC
65 TATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAA-----GG--
63109211 CATAAGTGTCG
123 C-TAA--GTCG
* ** * *
63109222 GCATAGTGTTGGAAAAAGCTGGCTCTTATTTAAACATTGCC-TTAGGCATGCATATCCCAACCCT
1 GCATAGTGTTGGACAAAGC-AACTCTTATTTAAGCATTGCCATTAGACATGCATATCCCAACCCT
* *
63109286 TATACAATGAGTTGGCCAAAGCGTATGTC-AGCAAGTCTATCCCGACACTTAGGAAAGTGTTGGC
65 TATACAAAGAGTTGGCCAAAGCGTATGTCGA-CAAGTCTATCCCAACACTTAGGAAA-----GG-
*
63109350 CCAAAAGTGTCG
123 -C-TAA--GTCG
* * *
63109362 GCATAGTGTTGGGCAAAGGCAACTCTTATTTAAGCGTTGTC-TTAGACATGCATATCCCAACCCT
1 GCATAGTGTTGGACAAA-GCAACTCTTATTTAAGCATTGCCATTAGACATGCATATCCCAACCCT
* * * * *
63109426 TATACAAAGAGTAGGCCAAAGTGTATGTTGGCAAGTCTATCCCAACACTTAAGAAA
65 TATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAA
63109482 AGTGTCGGCC
Statistics
Matches: 342, Mismatches: 38, Indels: 26
0.84 0.09 0.06
Matches are distributed among these distances:
125 2 0.01
126 105 0.31
132 1 0.00
136 1 0.00
137 1 0.00
139 2 0.01
140 227 0.66
141 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (130 bp):
GCATAGTGTTGGACAAAGCAACTCTTATTTAAGCATTGCCATTAGACATGCATATCCCAACCCTT
ATACAAAGAGTTGGCCAAAGCGTATGTCGACAAGTCTATCCCAACACTTAGGAAAGGCTAAGTCG
Found at i:63109338 original size:140 final size:139
Alignment explanation
Indices: 63109073--63109498 Score: 586
Period size: 140 Copynumber: 3.0 Consensus size: 139
63109063 AAAACTTAGG
* * * *
63109073 AAAGTATCGGCATAGTGTTGGACAAAG-TCGACTTTTATTTAAGCATTGCATTAGGCATGCATAT
1 AAAGTGTCGGCATAGTGTTGGAAAAAGCT-GACTCTTATTTAAGCATTGCCTTAGGCATGCATAT
* *
63109137 CCCAACCCTTATACAAAGAGTTGGCCAAAGTGTATTTCGACAAGTCTATCCCAACAGTTAGGAAA
65 CCCAACCCTTATACAAAGAGTTGGCCAAAGTGTATGTCG-CAAGTCTATCCCAACACTTAGGAAA
63109202 GTGTCGGCCCA
129 GTGTCGGCCCA
* * *
63109213 TAAGTGTCGGCATAGTGTTGGAAAAAGCTGGCTCTTATTTAAACATTGCCTTAGGCATGCATATC
1 AAAGTGTCGGCATAGTGTTGGAAAAAGCTGACTCTTATTTAAGCATTGCCTTAGGCATGCATATC
* * *
63109278 CCAACCCTTATACAATGAGTTGGCCAAAGCGTATGTCAGCAAGTCTATCCCGACACTTAGGAAAG
66 CCAACCCTTATACAAAGAGTTGGCCAAAGTGTATGTC-GCAAGTCTATCCCAACACTTAGGAAAG
*
63109343 TGTTGGCCCA
130 TGTCGGCCCA
* * * * * *
63109353 AAAGTGTCGGCATAGTGTTGGGCAAAGGC-AACTCTTATTTAAGCGTTGTCTTAGACATGCATAT
1 AAAGTGTCGGCATAGTGTT-GGAAAAAGCTGACTCTTATTTAAGCATTGCCTTAGGCATGCATAT
* * *
63109417 CCCAACCCTTATACAAAGAGTAGGCCAAAGTGTATGTTGGCAAGTCTATCCCAACACTTAAGAAA
65 CCCAACCCTTATACAAAGAGTTGGCCAAAGTGTATG-TCGCAAGTCTATCCCAACACTT-AGGAA
63109482 AGTGTCGGCCCA
128 AGTGTCGGCCCA
63109494 AAAGT
1 AAAGT
63109499 ATTGTCTTAG
Statistics
Matches: 252, Mismatches: 29, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
140 222 0.88
141 30 0.12
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (139 bp):
AAAGTGTCGGCATAGTGTTGGAAAAAGCTGACTCTTATTTAAGCATTGCCTTAGGCATGCATATC
CCAACCCTTATACAAAGAGTTGGCCAAAGTGTATGTCGCAAGTCTATCCCAACACTTAGGAAAGT
GTCGGCCCA
Found at i:63113522 original size:402 final size:403
Alignment explanation
Indices: 63112772--63113579 Score: 1510
Period size: 402 Copynumber: 2.0 Consensus size: 403
63112762 TTTTTCCTTT
* *
63112772 TGTGTTAATAAATTTATGCAGGGTAAACCTTTTAGATACATGCTTATGCGACTTTACATTTAGTT
1 TGTGTTAATAAATTTATGCAGGGTAAACCTTTTAGATACATGCTTATGCGACTTCACATTAAGTT
63112837 AGGGTGTAGCGGCGAAGGATTATTGTTCTTTTTGTTTCAGTGCTGTGTTGAAACTAAGCTATTTC
66 AGGGTGTAGCGGCGAAGGATTATTGTTCTTTTTGTTTCAGTGCTGTGTTGAAACTAAGCTATTTC
63112902 TTTCATGCTTCTGCTTCTGTGTTATTTTGATGTCCGATGCCATGCTTCAGCTTATATGTCGTATG
131 TTTCA----T-TGCTTCTGTGTTATTTTGATGTCCGATGCCATGCTTCAGCTTATATGTCGTATG
63112967 GTCTTTAAATATGTTTATTACGACAATTTGGTGCATCCTTGTTAGTTGAAGTCTCGTTTAGCCAA
191 GTCTTTAAATATGTTTATTACGACAATTTGGTGCATCCTTGTTAGTTGAAGTCTCGTTTAGCCAA
63113032 AACCACACAAACTAGCTCTCAGCAATATTGTTAAAAAACTTACATATTTGCAGACAAACTGGCGA
256 AACCACACAAACTAGCTCTCAGCAATATTGTTAAAAAACTTACATATTTGCAGACAAACTGGCGA
*
63113097 AGGCCCAAGGGTATTGACTCCCGTGTTAGGAGGAAGTTCAAGGGATGCACTTTGATGCCTAACAT
321 AGGCCCAAGGGTATTGACTCCCGTGTTAGGAGGAAGTTCAAGGGATGCACTTTGATGCCCAACAT
63113162 CGGTTATGGGTCAGACTA
386 CGGTTATGGGTCAGACTA
63113180 TGTGTTAATAAATTTATGCAGGGTAAACCTTTTAGATACATGCTTATGCGACTTCACATTAAGTT
1 TGTGTTAATAAATTTATGCAGGGTAAACCTTTTAGATACATGCTTATGCGACTTCACATTAAGTT
*
63113245 AGGGTGTAGCGGCGAAGGATTATTGTTCTTTTTGTTTCAGTGCTGTGTTGAAACTAAGCTCTTTC
66 AGGGTGTAGCGGCGAAGGATTATTGTTCTTTTTGTTTCAGTGCTGTGTTGAAACTAAGCTATTTC
* *
63113310 TTTCA-TGCTTCTGTGTTATTTTGATGTTCGATGCCTTGCTTCAGCTTATATGTCGTATGGTCTT
131 TTTCATTGCTTCTGTGTTATTTTGATGTCCGATGCCATGCTTCAGCTTATATGTCGTATGGTCTT
63113374 TAAATATGTTTATTACGACAATTTGGTGCATCCTTGTTAGTTGAAGTCTCGTTTAGCCAAAACCA
196 TAAATATGTTTATTACGACAATTTGGTGCATCCTTGTTAGTTGAAGTCTCGTTTAGCCAAAACCA
63113439 CACAAACTAGCTCTCAGCAATATTGTTAAAAAACTTACATATTTGCAGACAAACTGGCGAAGGCC
261 CACAAACTAGCTCTCAGCAATATTGTTAAAAAACTTACATATTTGCAGACAAACTGGCGAAGGCC
63113504 CAAGGGTATTGACTCCCGTGTTAGGAGGAAGTTCAAGGGATGCACTTTGATGCCCAACATCGGTT
326 CAAGGGTATTGACTCCCGTGTTAGGAGGAAGTTCAAGGGATGCACTTTGATGCCCAACATCGGTT
63113569 ATGGGTCAGAC
391 ATGGGTCAGAC
63113580 AAGAAAACAC
Statistics
Matches: 394, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
402 262 0.66
408 132 0.34
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (403 bp):
TGTGTTAATAAATTTATGCAGGGTAAACCTTTTAGATACATGCTTATGCGACTTCACATTAAGTT
AGGGTGTAGCGGCGAAGGATTATTGTTCTTTTTGTTTCAGTGCTGTGTTGAAACTAAGCTATTTC
TTTCATTGCTTCTGTGTTATTTTGATGTCCGATGCCATGCTTCAGCTTATATGTCGTATGGTCTT
TAAATATGTTTATTACGACAATTTGGTGCATCCTTGTTAGTTGAAGTCTCGTTTAGCCAAAACCA
CACAAACTAGCTCTCAGCAATATTGTTAAAAAACTTACATATTTGCAGACAAACTGGCGAAGGCC
CAAGGGTATTGACTCCCGTGTTAGGAGGAAGTTCAAGGGATGCACTTTGATGCCCAACATCGGTT
ATGGGTCAGACTA
Found at i:63114553 original size:10 final size:10
Alignment explanation
Indices: 63114538--63114562 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
63114528 TAATTAAATC
63114538 TTTAAAATGT
1 TTTAAAATGT
63114548 TTTAAAATGT
1 TTTAAAATGT
63114558 TTTAA
1 TTTAA
63114563 TTGTATTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (10 bp):
TTTAAAATGT
Found at i:63114925 original size:16 final size:16
Alignment explanation
Indices: 63114906--63114961 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
63114896 TTGAATTACT
* *
63114906 ATTACAGTTTTATTCC
1 ATTACAGCTCTATTCC
* *
63114922 ATTATACCTCTATTCC
1 ATTACAGCTCTATTCC
*
63114938 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
63114954 ATTACAGC
1 ATTACAGC
63114962 GAACCAAACG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:63116211 original size:20 final size:21
Alignment explanation
Indices: 63116154--63116211 Score: 93
Period size: 20 Copynumber: 2.9 Consensus size: 21
63116144 GTTGTAAAAT
*
63116154 AAAATTAATTTTAAAAA-ATA
1 AAAATTAAATTTAAAAATATA
63116174 AAAATTAAATTTAAAAATA-A
1 AAAATTAAATTTAAAAATATA
63116194 AAAATTAAATTTAAAAAT
1 AAAATTAAATTTAAAAAT
63116212 CAAGAAATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 35 0.97
21 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAATTAAATTTAAAAATATA
Found at i:63119538 original size:14 final size:13
Alignment explanation
Indices: 63119519--63119551 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
63119509 ATAAGCACTC
63119519 AGAAAAAGATAAAA
1 AGAAAAAGA-AAAA
63119533 AGAAAAAGAAAAA
1 AGAAAAAGAAAAA
63119546 AGAAAA
1 AGAAAA
63119552 GGGAACAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (13 bp):
AGAAAAAGAAAAA
Found at i:63124578 original size:3 final size:3
Alignment explanation
Indices: 63124570--63124598 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63124560 AATAAAATAG
63124570 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
63124599 GTTTAGCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:63125969 original size:3 final size:3
Alignment explanation
Indices: 63125963--63125997 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
63125953 CCTTTACTAC
63125963 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63125998 ATTCTTCTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:63146427 original size:18 final size:17
Alignment explanation
Indices: 63146373--63146443 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 17
63146363 ATAATTATTT
63146373 TAAATTATAT-TTTATAG
1 TAAATTATATATTT-TAG
*
63146390 TATTATATATTATGATTTTAG
1 TA-AAT-TA-TAT-ATTTTAG
*
63146411 TAAATTCATATATTTTAT
1 TAAATT-ATATATTTTAG
63146429 TAAATTATATATTTT
1 TAAATTATATATTTT
63146444 TGTTAAACAA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
17 11 0.24
18 14 0.31
19 6 0.13
20 6 0.13
21 5 0.11
22 3 0.07
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (17 bp):
TAAATTATATATTTTAG
Found at i:63146450 original size:18 final size:18
Alignment explanation
Indices: 63146404--63146443 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
63146394 ATATATTATG
*
63146404 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATTCATAT
63146422 ATTTTATTAAATT-ATAT
1 ATTTTATTAAATTCATAT
63146439 ATTTT
1 ATTTT
63146444 TGTTAAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTTTATTAAATTCATAT
Found at i:63146664 original size:39 final size:39
Alignment explanation
Indices: 63146606--63146826 Score: 197
Period size: 44 Copynumber: 5.5 Consensus size: 39
63146596 TCCTTAGGCT
*
63146606 ATTACACCTCTATTCCATTCAACCAAACATAAGAATACC
1 ATTACGCCTCTATTCCATTCAACCAAACATAAGAATACC
*
63146645 ATTACGCCTCTATTTCATTCCATTCAACCAAACAAAAGAATTACC
1 ATTACGCCTC----T-ATTCCATTCAACCAAACATAAGAA-TACC
* *
63146690 TATTACGCCTCTATTCCATT--ACGC-ATC-T--G--TTCC
1 -ATTACGCCTCTATTCCATTCAAC-CAAACATAAGAATACC
*
63146723 ATTACACCTCTATTCCATTCAACCAAACATAAGAATACC
1 ATTACGCCTCTATTCCATTCAACCAAACATAAGAATACC
*
63146762 ATTACGCCTCTATTTCATTCCATTCAACCAAACAAAAGAATTACC
1 ATTACGCCTC----T-ATTCCATTCAACCAAACATAAGAA-TACC
63146807 TATTACGCCTCTATTCCATT
1 -ATTACGCCTCTATTCCATT
63146827 ACGCATCTGT
Statistics
Matches: 149, Mismatches: 10, Indels: 44
0.73 0.05 0.22
Matches are distributed among these distances:
32 18 0.12
33 4 0.03
34 4 0.03
35 1 0.01
36 1 0.01
37 1 0.01
39 25 0.17
40 1 0.01
41 16 0.11
42 2 0.01
43 2 0.01
44 46 0.31
45 8 0.05
46 20 0.13
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.31
Consensus pattern (39 bp):
ATTACGCCTCTATTCCATTCAACCAAACATAAGAATACC
Found at i:63146712 original size:16 final size:16
Alignment explanation
Indices: 63146691--63146741 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
63146681 AGAATTACCT
63146691 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
* *
63146707 ATTACGCATCTGTTCC
1 ATTACGCCTCTATTCC
*
63146723 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
63146739 ATT
1 ATT
63146742 CAACCAAACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.22, C:0.33, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:63146812 original size:117 final size:117
Alignment explanation
Indices: 63146606--63146858 Score: 506
Period size: 117 Copynumber: 2.2 Consensus size: 117
63146596 TCCTTAGGCT
63146606 ATTACACCTCTATTCCATTCAACCAAACATAAGAATACCATTACGCCTCTATTTCATTCCATTCA
1 ATTACACCTCTATTCCATTCAACCAAACATAAGAATACCATTACGCCTCTATTTCATTCCATTCA
63146671 ACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTACGCATCTGTTCC
66 ACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTACGCATCTGTTCC
63146723 ATTACACCTCTATTCCATTCAACCAAACATAAGAATACCATTACGCCTCTATTTCATTCCATTCA
1 ATTACACCTCTATTCCATTCAACCAAACATAAGAATACCATTACGCCTCTATTTCATTCCATTCA
63146788 ACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTACGCATCTGTTCC
66 ACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTACGCATCTGTTCC
63146840 ATTACACCTCTATTCCATT
1 ATTACACCTCTATTCCATT
63146859 ATAGCGAACC
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 136 1.00
ACGTcount: A:0.33, C:0.31, G:0.05, T:0.32
Consensus pattern (117 bp):
ATTACACCTCTATTCCATTCAACCAAACATAAGAATACCATTACGCCTCTATTTCATTCCATTCA
ACCAAACAAAAGAATTACCTATTACGCCTCTATTCCATTACGCATCTGTTCC
Found at i:63146829 original size:16 final size:16
Alignment explanation
Indices: 63146808--63146859 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
63146798 AGAATTACCT
63146808 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
* *
63146824 ATTACGCATCTGTTCC
1 ATTACGCCTCTATTCC
*
63146840 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
63146856 ATTA
1 ATTA
63146860 TAGCGAACCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.23, C:0.33, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:63150300 original size:24 final size:24
Alignment explanation
Indices: 63150280--63150330 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
63150270 CTTAATTCAT
63150280 AAAAA-TTTAAAAA-TAAAAATTA
1 AAAAACTTTAAAAACTAAAAATTA
*
63150302 AAAAACTTTAAAAACTAAAAACTA
1 AAAAACTTTAAAAACTAAAAATTA
63150326 AAAAA
1 AAAAA
63150331 TATATTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 5 0.19
23 8 0.31
24 13 0.50
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.22
Consensus pattern (24 bp):
AAAAACTTTAAAAACTAAAAATTA
Found at i:63150306 original size:14 final size:14
Alignment explanation
Indices: 63150278--63150329 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
63150268 ATCTTAATTC
*
63150278 ATAAAAATTTAAAA
1 ATAAAAATTAAAAA
63150292 ATAAAAATTAAAAA
1 ATAAAAATTAAAAA
*
63150306 ACTTTAAAAACTAAAAA
1 A---TAAAAATTAAAAA
*
63150323 CTAAAAA
1 ATAAAAA
63150330 ATATATTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
14 20 0.62
17 12 0.38
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (14 bp):
ATAAAAATTAAAAA
Found at i:63151755 original size:19 final size:19
Alignment explanation
Indices: 63151705--63151756 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
63151695 ACCTTGAAAA
63151705 TTATATCGATACCTATTGAAT
1 TTATATCGATACCTA-T-AAT
*
63151726 TT-TATCAATACCTA-AACT
1 TTATATCGATACCTATAA-T
63151744 TTATATCGATACC
1 TTATATCGATACC
63151757 ATTTTTACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 2 0.07
18 3 0.11
19 9 0.33
20 11 0.41
21 2 0.07
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (19 bp):
TTATATCGATACCTATAAT
Found at i:63156664 original size:20 final size:20
Alignment explanation
Indices: 63156639--63156678 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
63156629 TTGACAAAGA
63156639 TGAGGAAGGTAAATGTGTTG
1 TGAGGAAGGTAAATGTGTTG
63156659 TGAGGAAGGTAAATGTGTTG
1 TGAGGAAGGTAAATGTGTTG
63156679 ATTTAAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.40, T:0.30
Consensus pattern (20 bp):
TGAGGAAGGTAAATGTGTTG
Found at i:63157796 original size:21 final size:20
Alignment explanation
Indices: 63157767--63157805 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
63157757 ATGCTTTTTG
* *
63157767 AAAAATATCGATATTCATTT
1 AAAAATATCAATACTCATTT
63157787 AAAAAGTATCAATACTCAT
1 AAAAA-TATCAATACTCAT
63157806 GGAACCTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAAATATCAATACTCATTT
Found at i:63162856 original size:3 final size:3
Alignment explanation
Indices: 63162848--63162891 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
63162838 GCTATTCAAC
63162848 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CT
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CT
63162892 GCTGCTGCTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
CTA
Found at i:63162896 original size:3 final size:3
Alignment explanation
Indices: 63162890--63162924 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
63162880 ACTACTACTA
63162890 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
1 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
63162925 ATAGTGGAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.34, G:0.31, T:0.34
Consensus pattern (3 bp):
CTG
Found at i:63163689 original size:3 final size:3
Alignment explanation
Indices: 63163681--63163706 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
63163671 GATTGGCACC
63163681 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
63163707 TGATTTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:63178725 original size:49 final size:49
Alignment explanation
Indices: 63178668--63178762 Score: 147
Period size: 49 Copynumber: 1.9 Consensus size: 49
63178658 TTCTTAGGTC
* * *
63178668 ATTCTACTTTTAGGCATCAATTTTCG-CACGACTATCCTAAGTTAAACAT
1 ATTCTACTTTTAGGCATAAATTTT-GACACGACTATCCCAAGCTAAACAT
63178717 ATTCTACTTTTAGGCATAAATTTTGACACGACTATCCCAAGCTAAA
1 ATTCTACTTTTAGGCATAAATTTTGACACGACTATCCCAAGCTAAA
63178763 TATACCTAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
48 1 0.02
49 41 0.98
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (49 bp):
ATTCTACTTTTAGGCATAAATTTTGACACGACTATCCCAAGCTAAACAT
Found at i:63180555 original size:19 final size:21
Alignment explanation
Indices: 63180533--63180571 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
63180523 ATTATATTGA
63180533 ACTTG-TATAT-GATTATTTT
1 ACTTGCTATATAGATTATTTT
*
63180552 ACTTGCTTTATAGATTATTT
1 ACTTGCTATATAGATTATTT
63180572 ACATTAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 4 0.24
21 8 0.47
ACGTcount: A:0.26, C:0.08, G:0.10, T:0.56
Consensus pattern (21 bp):
ACTTGCTATATAGATTATTTT
Found at i:63182649 original size:20 final size:20
Alignment explanation
Indices: 63182600--63182670 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 20
63182590 TGTGATTTGG
*
63182600 TATTGATA-CTATTTTAAAAT
1 TATTGATACCT-TTATAAAAT
*
63182620 TGTTGATACCTTTATAAAAT
1 TATTGATACCTTTATAAAAT
*
63182640 TATTGATACCCGCTTA-AAAA-
1 TATTGATA-CC-TTTATAAAAT
63182660 TATTGATACCT
1 TATTGATACCT
63182671 GTCAAGTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
19 2 0.05
20 30 0.70
21 8 0.19
22 3 0.07
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (20 bp):
TATTGATACCTTTATAAAAT
Found at i:63182874 original size:20 final size:22
Alignment explanation
Indices: 63182833--63182874 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
63182823 TTCTAACACT
63182833 ATTGCATCAAGATTTCTTCAAC
1 ATTGCATCAAGATTTCTTCAAC
*
63182855 ATTGCTTCAAG-TTT-TTCAAC
1 ATTGCATCAAGATTTCTTCAAC
63182875 TTTTCAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 3 0.16
22 10 0.53
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (22 bp):
ATTGCATCAAGATTTCTTCAAC
Found at i:63199217 original size:28 final size:28
Alignment explanation
Indices: 63199177--63199232 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
63199167 ATAACTAAAA
63199177 AAAATGAATAGCGTGAAACAAAGGCAAG
1 AAAATGAATAGCGTGAAACAAAGGCAAG
*
63199205 AAAATGAATAGCGTGAAAGAAAGGCAAG
1 AAAATGAATAGCGTGAAACAAAGGCAAG
63199233 TATAATCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.54, C:0.09, G:0.27, T:0.11
Consensus pattern (28 bp):
AAAATGAATAGCGTGAAACAAAGGCAAG
Found at i:63199270 original size:27 final size:28
Alignment explanation
Indices: 63199240--63199298 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
63199230 AAGTATAATC
** *
63199240 AATAAATTGTATATATAA-AAATTTTAA
1 AATAAATAATATATATAAGAAAGTTTAA
*
63199267 AATAAATAATATATATAAGAAAGTTTGA
1 AATAAATAATATATATAAGAAAGTTTAA
63199295 AATA
1 AATA
63199299 GATTAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 16 0.59
28 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.36
Consensus pattern (28 bp):
AATAAATAATATATATAAGAAAGTTTAA
Found at i:63199471 original size:12 final size:12
Alignment explanation
Indices: 63199454--63199484 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
63199444 TCAAAAACTC
63199454 AATATAGATAAT
1 AATATAGATAAT
*
63199466 AATATATATAAT
1 AATATAGATAAT
63199478 AATATAG
1 AATATAG
63199485 GTAAAAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (12 bp):
AATATAGATAAT
Found at i:63199799 original size:23 final size:24
Alignment explanation
Indices: 63199772--63199873 Score: 120
Period size: 23 Copynumber: 4.4 Consensus size: 24
63199762 AAATAAGGTC
63199772 AAAATAATAATACATGAT-AACTT
1 AAAATAATAATACATGATAAACTT
* *
63199795 TAAATAAAAATACATGATAAACTT
1 AAAATAATAATACATGATAAACTT
**
63199819 AAAATAATTTTA-ATGATAAACTT
1 AAAATAATAATACATGATAAACTT
* * *
63199842 AAAATAATAATATATTATATA-TT
1 AAAATAATAATACATGATAAACTT
63199865 AAAATAATA
1 AAAATAATA
63199874 TTGACGATAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
23 48 0.72
24 19 0.28
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (24 bp):
AAAATAATAATACATGATAAACTT
Found at i:63199867 original size:46 final size:47
Alignment explanation
Indices: 63199772--63199891 Score: 127
Period size: 47 Copynumber: 2.6 Consensus size: 47
63199762 AAATAAGGTC
* *
63199772 AAAATAATAATACATGAT-AACTTTAAATAAAAATACATGATAAACTT
1 AAAATAATATTA-ATGATAAACTTAAAATAAAAATACATGATAAACTT
* * * * *
63199819 AAAATAATTTTAATGATAAACTTAAAATAATAATATATTATATA-TT
1 AAAATAATATTAATGATAAACTTAAAATAAAAATACATGATAAACTT
* * *
63199865 AAAATAATATTGACGATAAATTTAAAA
1 AAAATAATATTAATGATAAACTTAAAA
63199892 ATATATTAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
46 30 0.49
47 31 0.51
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (47 bp):
AAAATAATATTAATGATAAACTTAAAATAAAAATACATGATAAACTT
Found at i:63199889 original size:23 final size:21
Alignment explanation
Indices: 63199810--63199899 Score: 58
Period size: 23 Copynumber: 4.0 Consensus size: 21
63199800 AAAAATACAT
*
63199810 GATAAACTTAAAATAATTTTAA
1 GATAAACTTAAAATAATATT-A
63199832 TGATAAACTTAAAATAATAATATA
1 -GATAAACTTAAAATAAT-AT-TA
* *
63199856 TTATATA-TTAAAATAATATTGA
1 -GATAAACTTAAAATAATATT-A
*
63199878 CGATAAATTTAAAA-ATATATTA
1 -GATAAACTTAAAATA-ATATTA
63199900 AGCTTAAACA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.02
22 9 0.16
23 38 0.68
24 7 0.12
25 1 0.02
ACGTcount: A:0.54, C:0.03, G:0.04, T:0.38
Consensus pattern (21 bp):
GATAAACTTAAAATAATATTA
Found at i:63201448 original size:54 final size:51
Alignment explanation
Indices: 63201380--63201499 Score: 125
Period size: 51 Copynumber: 2.3 Consensus size: 51
63201370 TACAACTTCA
* * *
63201380 GGAAGATAAAATTCGCCATAACTTGTAACTTTAATTTGTTCCACTGCAACGCCAG
1 GGAA-ATAAAATTCG-C-TAACCT-TAACTTTAATCTATTCCACTGCAACGCCAG
** * *
63201435 GGAAATAAAATTCGCTGCCCTTAGCTTTAATCTATTCCACTGCAATGCCAG
1 GGAAATAAAATTCGCTAACCTTAACTTTAATCTATTCCACTGCAACGCCAG
63201486 GGAAA-AAAGATTCG
1 GGAAATAAA-ATTCG
63201500 TTGTTTCAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
50 3 0.05
51 36 0.63
52 3 0.05
53 1 0.02
54 10 0.18
55 4 0.07
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (51 bp):
GGAAATAAAATTCGCTAACCTTAACTTTAATCTATTCCACTGCAACGCCAG
Found at i:63201532 original size:44 final size:44
Alignment explanation
Indices: 63201458--63201576 Score: 98
Period size: 44 Copynumber: 2.7 Consensus size: 44
63201448 GCTGCCCTTA
* * ** * *
63201458 GCTTTAATCTATTCCACTGCAA-TGCCAGGGAAAAAAGATTCGTT
1 GCTTCAATCTACTCCACTGCAACT-TTAGGGAAAAAAGACTCGTG
* * * * * *
63201502 GTTTCAATCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTG
1 GCTTCAATCTACTCCACTGCAACTTTAGGGAAAAAAGACTCGTG
*
63201546 GCTTCAATCTACTCCATTGCAACTTT-GGGAA
1 GCTTCAATCTACTCCACTGCAACTTTAGGGAA
63201577 GATAAGATCT
Statistics
Matches: 58, Mismatches: 16, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
43 4 0.07
44 53 0.91
45 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
GCTTCAATCTACTCCACTGCAACTTTAGGGAAAAAAGACTCGTG
Found at i:63201658 original size:193 final size:192
Alignment explanation
Indices: 63201321--63201887 Score: 760
Period size: 193 Copynumber: 2.9 Consensus size: 192
63201311 TTCGATTCAA
* * * *
63201321 TCCACTGTAACTTCATGGAGATAAAGCTGGTGGCTTCAATCCACTCCATTACAACTTCAGGAAGA
1 TCCACTGTAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCATTGCAACTTCAGGAAGA
* * *
63201386 TAAAAT-TCGCCATAACTTGTAACTTTAATTTGTTCCACTGCAACGCCAGGGAAATAAAATTCGC
66 TAAAATCT-GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAAATTCGC
* * * *
63201450 TGCCCTT-AGCTTTAATCTATTCCACTGCAATGCCAGGGAAAAAAGATTCGTTGTTTCAATCTGC
130 TG-CCTTCAGCTTTAATCTGTTCCACTGCAA-GCTAGGGAAAAAAGATTCGCTATTTCAATCTGC
* * * **
63201514 TCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCATTGCAACTTTGGGAAGA
1 TCCACTGTAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCATTGCAACTTCAGGAAGA
* * * * *
63201579 TAAGATCTGCCATAATTTGTAGCTTTAATCTATTCCACTGTAACGCCAGGGAAATAATAGTCGCT
66 TAAAATCTGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAAATTCGCT
* * *
63201644 GCCTTCAACTTTAATCTGTTCCATTACAACGCTAGGGAAAAAAGATTCGCTATTTCAATCTGC
131 GCCTTCAGCTTTAATCTGTTCCACTGCAA-GCTAGGGAAAAAAGATTCGCTATTTCAATCTGC
** * * * *
63201707 TCTGCTGTAACTTCAAGAAGATAAGGCTGGTGGCTTCAATCTGCTCTACTGCAACTTCAGGAAGA
1 TCCACTGTAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCATTGCAACTTCAGGAAGA
* * *
63201772 TAAAATCCGCCATAATTTGTAGCTTTAACCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCT
66 TAAAATCTGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAAATTCGCT
* *
63201837 GCCTTCAGCTTTAATCCGTTCCACCGCAAGACTAGGGAAAAAAGATTCGCT
131 GCCTTCAGCTTTAATCTGTTCCACTGCAAG-CTAGGGAAAAAAGATTCGCT
63201888 GCCTTCAGCT
Statistics
Matches: 324, Mismatches: 47, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
192 5 0.02
193 318 0.98
194 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (192 bp):
TCCACTGTAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTACTCCATTGCAACTTCAGGAAGA
TAAAATCTGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAAATTCGCT
GCCTTCAGCTTTAATCTGTTCCACTGCAAGCTAGGGAAAAAAGATTCGCTATTTCAATCTGC
Found at i:63201850 original size:51 final size:51
Alignment explanation
Indices: 63201792--63202040 Score: 302
Period size: 51 Copynumber: 4.9 Consensus size: 51
63201782 CATAATTTGT
*
63201792 AGCTTTAACCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
63201843 AGCTTTAATCCGTTCCACCGCAA-GACTAGGGAAAAAAGATTCGCTGCCTTC
1 AGCTTTAATCTGTTCCACTGCAACG-CCAGGGAAATAAGATTCGCTGCCTTC
* * * *
63201894 AGCTTTAATCTGTTCCACTGTAATGCCAGGGAAATAAGTTTCGCTGCCTTT
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
** * * * *
63201945 AGCTTTAATCTGTTCCACTATAACGCCAGGGAAATAAAATTTGCTACTTTC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
* * * *
63201996 AGCTTTAATTTGTTCCACTGCAATGCTAGGGAAAAAAAGATTCGC
1 AGCTTTAATCTGTTCCACTGCAACGCCAGGG-AAATAAGATTCGC
63202041 CATAATGAAT
Statistics
Matches: 167, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
50 1 0.01
51 155 0.93
52 11 0.07
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (51 bp):
AGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTC
Found at i:63209238 original size:12 final size:12
Alignment explanation
Indices: 63209221--63209251 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
63209211 TCAAAAACTC
63209221 AATATAGATAAT
1 AATATAGATAAT
*
63209233 AATATATATAAT
1 AATATAGATAAT
63209245 AATATAG
1 AATATAG
63209252 GTAAAAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (12 bp):
AATATAGATAAT
Found at i:63209547 original size:23 final size:23
Alignment explanation
Indices: 63209510--63209648 Score: 145
Period size: 23 Copynumber: 6.0 Consensus size: 23
63209500 GAATGCATAA
*
63209510 AATAATACATGATAAATTTAAAT
1 AATAATACATGATAAATTAAAAT
* * *
63209533 AATCATAGATGATAAGTTCAAAAT
1 AATAATACATGATAAATT-AAAAT
* *
63209557 AATAATACATGATAACTTTAAAT
1 AATAATACATGATAAATTAAAAT
*
63209580 AAAAATACATGATAAACTTAAAAT
1 AATAATACATGATAAA-TTAAAAT
* *
63209604 AATAATATATTATAAATTAAAAT
1 AATAATACATGATAAATTAAAAT
**
63209627 AAT-ATTGATGATAAATTTAAAA
1 AATAATACATGATAAA-TTAAAA
63209649 ATATATTAAG
Statistics
Matches: 96, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
22 9 0.09
23 49 0.51
24 38 0.40
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (23 bp):
AATAATACATGATAAATTAAAAT
Found at i:63209651 original size:47 final size:46
Alignment explanation
Indices: 63209510--63209648 Score: 163
Period size: 47 Copynumber: 3.0 Consensus size: 46
63209500 GAATGCATAA
*
63209510 AATAATACATGATAAATTTAAATAATCATAGATGAT-AAGTTCAAAAT
1 AATAATACATGATAAATTTAAATAAT-ATAGATGATAAACTT-AAAAT
* * *
63209557 AATAATACATGATAACTTTAAATAAAAATACATGATAAACTTAAAAT
1 AATAATACATGATAAATTTAAAT-AATATAGATGATAAACTTAAAAT
* * * * *
63209604 AATAATATATTATAAATTAAAATAATATTGATGATAAATTTAAAA
1 AATAATACATGATAAATTTAAATAATATAGATGATAAACTTAAAA
63209649 ATATATTAAG
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
46 18 0.23
47 54 0.69
48 6 0.08
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (46 bp):
AATAATACATGATAAATTTAAATAATATAGATGATAAACTTAAAAT
Found at i:63212113 original size:20 final size:19
Alignment explanation
Indices: 63212088--63212144 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
63212078 ATCAACCTTT
63212088 AATCAAGTTAAAATGATTTC
1 AATCAAGTTAAAAT-ATTTC
* *
63212108 AATCAAGTTAGAACTTTTTC
1 AATCAAGTTA-AAATATTTC
*
63212128 AATC-AGTTAAACTATTT
1 AATCAAGTTAAAATATTT
63212145 TAAAAACAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 7 0.21
19 5 0.15
20 18 0.55
21 3 0.09
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (19 bp):
AATCAAGTTAAAATATTTC
Found at i:63212145 original size:20 final size:20
Alignment explanation
Indices: 63212104--63212145 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
63212094 GTTAAAATGA
63212104 TTTCAATCAAGTTAGAACTT
1 TTTCAATCAAGTTAGAACTT
63212124 TTTCAATC-AGTTA-AACTAT
1 TTTCAATCAAGTTAGAACT-T
63212143 TTT
1 TTT
63212146 AAAAACAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.19
19 9 0.43
20 8 0.38
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.45
Consensus pattern (20 bp):
TTTCAATCAAGTTAGAACTT
Found at i:63214662 original size:90 final size:90
Alignment explanation
Indices: 63214505--63214673 Score: 252
Period size: 90 Copynumber: 1.9 Consensus size: 90
63214495 CGATTAAACC
*
63214505 ATGATTTAGTTAGTCCAAATAATTACCATGGTTAATAATTTCGATTAAAGCGTTGAAGTGGAATT
1 ATGATTTAGTTAGTCCAAATAATTACCATGATTAATAATTTCGATTAAAGCGTTGAAGTGGAATT
*
63214570 TTCCTTAAACATACACGGTTAAGCA
66 TTCCGTAAACATACACGGTTAAGCA
* ** *
63214595 ATGATTTAGTTAGTCCAAATAATTATCATGATTAATAATTTC-AGTTAAATTGTTGAGGT-GAAT
1 ATGATTTAGTTAGTCCAAATAATTACCATGATTAATAATTTCGA-TTAAAGCGTTGAAGTGGAA-
63214658 TTTTCCGTAAACATAC
64 TTTTCCGTAAACATAC
63214674 TTATTCTGAT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
89 4 0.06
90 67 0.94
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (90 bp):
ATGATTTAGTTAGTCCAAATAATTACCATGATTAATAATTTCGATTAAAGCGTTGAAGTGGAATT
TTCCGTAAACATACACGGTTAAGCA
Found at i:63215003 original size:51 final size:51
Alignment explanation
Indices: 63214947--63215051 Score: 115
Period size: 50 Copynumber: 2.1 Consensus size: 51
63214937 CCGGCCCATT
**
63214947 TTTTAATAAACATTAAAAAATT-ATTTTAAAAATAAAAAAAT-AAAAAATATA
1 TTTTAA-AAACATTAAAAAATTAAAATT-AAAATAAAAAAATAAAAAAATATA
** ** *
63214998 TTTTAAAAGTATTTTAAAATTAAAATTAAAATTAAAAAATAAAAAAATATA
1 TTTTAAAAACATTAAAAAATTAAAATTAAAATAAAAAAATAAAAAAATATA
63215049 TTT
1 TTT
63215052 ATTATATTCG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
50 23 0.51
51 22 0.49
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (51 bp):
TTTTAAAAACATTAAAAAATTAAAATTAAAATAAAAAAATAAAAAAATATA
Found at i:63218662 original size:16 final size:18
Alignment explanation
Indices: 63218625--63218671 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
63218615 TTTCTTATTA
* *
63218625 TTTGAAATTTCTTAAGTT
1 TTTGAAACTCCTTAAGTT
63218643 TTTG-AACTCCTTAA-TT
1 TTTGAAACTCCTTAAGTT
63218659 TTTGAAACTCCTT
1 TTTGAAACTCCTT
63218672 TCTTCTTCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 6 0.23
17 16 0.62
18 4 0.15
ACGTcount: A:0.26, C:0.15, G:0.09, T:0.51
Consensus pattern (18 bp):
TTTGAAACTCCTTAAGTT
Found at i:63220700 original size:22 final size:22
Alignment explanation
Indices: 63220669--63220736 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
63220659 ACGGGTAAAA
63220669 ACGATTGGCACAAAGCCATAATC
1 ACGA-TGGCACAAAGCCATAATC
* * *
63220692 ACGATGGCACAGAGCCATATTT
1 ACGATGGCACAAAGCCATAATC
* * *
63220714 AGGTTGGCATAAAGCCATAATC
1 ACGATGGCACAAAGCCATAATC
63220736 A
1 A
63220737 GATTAAGCAG
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
22 32 0.89
23 4 0.11
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (22 bp):
ACGATGGCACAAAGCCATAATC
Found at i:63221082 original size:27 final size:27
Alignment explanation
Indices: 63221052--63221140 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
63221042 ACCCTTTGGG
63221052 GGTATTTCGGTAATTCTACCCTACAGA
1 GGTATTTCGGTAATTCTACCCTACAGA
*
63221079 GGTATTTCGGTGA-TCTTACCCTACAGA
1 GGTATTTCGGTAATTC-TACCCTACAGA
* *
63221106 GGTATTTTGGTAATCCTACCCTACAGA
1 GGTATTTCGGTAATTCTACCCTACAGA
63221133 GGTATTTC
1 GGTATTTC
63221141 AATATTTCAG
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 2 0.04
27 52 0.95
28 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGA
Found at i:63221181 original size:27 final size:27
Alignment explanation
Indices: 63221143--63221321 Score: 168
Period size: 27 Copynumber: 6.6 Consensus size: 27
63221133 GGTATTTCAA
*
63221143 TATTTC-AGTAATTTTGCAAACTGAGGG
1 TATTTCGA-TAATTTTACAAACTGAGGG
* * *
63221170 TATTTC-AGTAATTTTGCAAACTAAAGG
1 TATTTCGA-TAATTTTACAAACTGAGGG
* * *
63221197 TATTTCGATAA-TTTAAAAAATTAGAGG
1 TATTTCGATAATTTTACAAACTGAG-GG
* * * *
63221224 TATTTCGATGATTTTAAAAATTGGGGG
1 TATTTCGATAATTTTACAAACTGAGGG
*
63221251 TATTTCGATAATTTTACAAA-TTAGGAG
1 TATTTCGATAATTTTACAAACTGAGG-G
* *
63221278 TATTTTGGTAATTTTACAAACTGAGGG
1 TATTTCGATAATTTTACAAACTGAGGG
63221305 TATTTCGATAATTTTAC
1 TATTTCGATAATTTTAC
63221322 CCTACACGGG
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 11 0.09
27 101 0.80
28 15 0.12
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.40
Consensus pattern (27 bp):
TATTTCGATAATTTTACAAACTGAGGG
Found at i:63226991 original size:13 final size:13
Alignment explanation
Indices: 63226973--63227004 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
63226963 TTGAAGAGAA
63226973 AAATTTTATTAAG
1 AAATTTTATTAAG
63226986 AAATTTTATTAAG
1 AAATTTTATTAAG
63226999 AAATTT
1 AAATTT
63227005 GGATAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (13 bp):
AAATTTTATTAAG
Found at i:63234908 original size:25 final size:25
Alignment explanation
Indices: 63234866--63234929 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
63234856 TCCACCGCTT
* * * *
63234866 GTGAAATCATGCCAATTTATATCTC
1 GTGAAAGCATACCGATTTATAGCTC
63234891 GTGAAAGCATACCGATTTATAGCTC
1 GTGAAAGCATACCGATTTATAGCTC
* *
63234916 TTGAGAGCATACCG
1 GTGAAAGCATACCG
63234930 GTCTACAACT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (25 bp):
GTGAAAGCATACCGATTTATAGCTC
Found at i:63237972 original size:23 final size:22
Alignment explanation
Indices: 63237946--63238017 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 22
63237936 GTCATTACAA
**
63237946 AATATGCTACAAAGGCATCATGG
1 AATA-GCTACAAAGGCATCAAAG
*
63237969 AATA-CGACATAAGGGCATCAAAG
1 AATAGCTACA-AA-GGCATCAAAG
* *
63237992 AATACGCTACAAAGACATCACAG
1 AATA-GCTACAAAGGCATCAAAG
63238015 AAT
1 AAT
63238018 CGATCTTATC
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
21 4 0.10
22 2 0.05
23 27 0.69
24 2 0.05
25 4 0.10
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.17
Consensus pattern (22 bp):
AATAGCTACAAAGGCATCAAAG
Found at i:63241479 original size:40 final size:39
Alignment explanation
Indices: 63241413--63241708 Score: 281
Period size: 40 Copynumber: 7.4 Consensus size: 39
63241403 GGAGTATAAG
* * * * *
63241413 CAGGGCATGTAAGTGC-TTTCAAGGGTACCAAAGTGCAAA
1 CAGGGCACGTATGTGCATTT-AGGGGTACCGAAGTACAAA
* *
63241452 CAGGGTCATGTATGTGCATTTAGGGGTACCGAAATACAAA
1 CAGGG-CACGTATGTGCATTTAGGGGTACCGAAGTACAAA
*
63241492 CAGAGGTACGTATGTGCATTTAGGGGTACCGAAGTACAAA
1 CAG-GGCACGTATGTGCATTTAGGGGTACCGAAGTACAAA
* * * *
63241532 CAAAGGCACGTATGTGCATTCACGAGTACCGAAGTACAAA
1 C-AGGGCACGTATGTGCATTTAGGGGTACCGAAGTACAAA
* * * * *
63241572 CAAAGGCACGGATGTGCAATCAAGGGTACCGAAGTACAAA
1 C-AGGGCACGTATGTGCATTTAGGGGTACCGAAGTACAAA
* * * * *
63241612 CAGGGGAGTGTATGTGAAATTAGGGGTACTGAAGTACAAA
1 CAGGGCA-CGTATGTGCATTTAGGGGTACCGAAGTACAAA
* *
63241652 CAAGGGCACGTATGTGCATTCAGGGGTACC-AATGTACAAG
1 C-AGGGCACGTATGTGCATTTAGGGGTACCGAA-GTACAAA
*
63241692 CAGGGCACGAATGTGCA
1 CAGGGCACGTATGTGCA
63241709 ATCAAGGGTA
Statistics
Matches: 217, Mismatches: 33, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
39 26 0.12
40 180 0.83
41 11 0.05
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (39 bp):
CAGGGCACGTATGTGCATTTAGGGGTACCGAAGTACAAA
Done.