Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 207 of 313
Found at i:63560008 original size:21 final size:21
Alignment explanation
Indices: 63559984--63560038 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
63559974 CCTGATTGAA
*
63559984 TGATGCTTTGAATCGA-TTATT
1 TGATGCTTTAAATC-ACTTATT
*
63560005 TGATG-TTTAAATCACTTGTT
1 TGATGCTTTAAATCACTTATT
63560025 TGATGCTTTAAATC
1 TGATGCTTTAAATC
63560039 TTTATGCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 16 0.53
21 13 0.43
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.47
Consensus pattern (21 bp):
TGATGCTTTAAATCACTTATT
Found at i:63562006 original size:24 final size:24
Alignment explanation
Indices: 63561939--63562006 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
63561929 TTTTAATAAT
*
63561939 AATTATA-TTAAGAA-TATTATTA
1 AATTATATTTAATAATTATTATTA
* * * *
63561961 AATTATATATCATTATTTTTATTA
1 AATTATATTTAATAATTATTATTA
63561985 AATTATATTTAATAATTATTAT
1 AATTATATTTAATAATTATTAT
63562007 ATTAAAATAT
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
22 7 0.20
23 3 0.09
24 25 0.71
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (24 bp):
AATTATATTTAATAATTATTATTA
Found at i:63562035 original size:26 final size:28
Alignment explanation
Indices: 63561972--63562036 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 28
63561962 ATTATATATC
*
63561972 ATTATTT-TTATTAAATTATATTTAATA
1 ATTATTTATTATTAAAATATATTTAATA
63561999 ATTA-TTA-TATTAAAATATGA-TT-A-A
1 ATTATTTATTATTAAAATAT-ATTTAATA
63562023 ATTATTTATTATTA
1 ATTATTTATTATTA
63562037 TTAATTTACA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
24 5 0.15
25 4 0.12
26 19 0.58
27 5 0.15
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (28 bp):
ATTATTTATTATTAAAATATATTTAATA
Found at i:63562631 original size:13 final size:13
Alignment explanation
Indices: 63562613--63562639 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63562603 GAAAAGTAAG
63562613 AGTATCCAAGGGT
1 AGTATCCAAGGGT
63562626 AGTATCCAAGGGT
1 AGTATCCAAGGGT
63562639 A
1 A
63562640 CTTATCTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (13 bp):
AGTATCCAAGGGT
Found at i:63575728 original size:294 final size:294
Alignment explanation
Indices: 63575199--63576087 Score: 1724
Period size: 294 Copynumber: 3.0 Consensus size: 294
63575189 ATTATGTCCC
*
63575199 ATCCAAAGTGAGACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
1 ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
63575264 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
66 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
63575329 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
131 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
63575394 TACTTTCCTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCGTTGTACTAAACAAG
196 TACTTTCCTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCGTTGTACTAAACAAG
63575459 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
261 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
63575493 ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
1 ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
63575558 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
66 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
63575623 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
131 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
63575688 TACTTTCCTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCGTTGTACTAAACAAG
196 TACTTTCCTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCGTTGTACTAAACAAG
63575753 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
261 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
63575787 ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
1 ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
* *
63575852 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACTTAGGAATAAGAGACTAAATG
66 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
63575917 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
131 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
** *
63575982 TACTTTATTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCATTGTACTAAACAAG
196 TACTTTCCTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCGTTGTACTAAACAAG
63576047 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
261 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
63576081 ATCCAAA
1 ATCCAAA
63576088 TTACCATCAA
Statistics
Matches: 589, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
294 589 1.00
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.31
Consensus pattern (294 bp):
ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
TACTTTCCTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCGTTGTACTAAACAAG
ATAAACCATATATCTCCACTAGCTTCTCCACCTT
Found at i:63577303 original size:3 final size:3
Alignment explanation
Indices: 63577297--63577326 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
63577287 AGAAAAAGAA
*
63577297 GAG GAG GAG GAG GGG GAG GAG GAG GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
63577327 AAGAAGAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:63578291 original size:3 final size:3
Alignment explanation
Indices: 63578283--63578320 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
63578273 TTTTACAGTC
*
63578283 TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT T-T TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
63578321 GTTATTAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:63578506 original size:30 final size:30
Alignment explanation
Indices: 63578442--63578510 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
63578432 ATGTTAGTGG
63578442 GTGACTGATTTGTCATTTTTTGATAACATTA
1 GTGACTGATTTGTCATTTTTT-ATAACATTA
* *
63578473 GTGACTGTTTTGTTATTTTTT-TAA-AGTTGA
1 GTGACTGATTTGTCATTTTTTATAACA-TT-A
63578503 GTGACTGA
1 GTGACTGA
63578511 AATGAAACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
28 1 0.03
29 5 0.15
30 8 0.24
31 19 0.58
ACGTcount: A:0.23, C:0.07, G:0.20, T:0.49
Consensus pattern (30 bp):
GTGACTGATTTGTCATTTTTTATAACATTA
Found at i:63580879 original size:31 final size:29
Alignment explanation
Indices: 63580836--63580899 Score: 69
Period size: 29 Copynumber: 2.1 Consensus size: 29
63580826 GTCATATTTT
*
63580836 GTACATGTACTTTTATAAAATGT-TCAATGTG
1 GTACATGTAC-TTT-GAAAATGTCT-AATGTG
63580867 GTACATAG-ACTTTGAAAATGTCTAATGTG
1 GTACAT-GTACTTTGAAAATGTCTAATGTG
63580896 GTAC
1 GTAC
63580900 TTTATTTATC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
29 17 0.57
30 4 0.13
31 8 0.27
32 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (29 bp):
GTACATGTACTTTGAAAATGTCTAATGTG
Found at i:63582911 original size:22 final size:23
Alignment explanation
Indices: 63582886--63582931 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
63582876 TTTAATTAAT
63582886 TAACATATCTT-TTTTTATTGAC
1 TAACATATCTTGTTTTTATTGAC
*
63582908 TAACATCTCTTGTTTTTATTGAC
1 TAACATATCTTGTTTTTATTGAC
63582931 T
1 T
63582932 CCTTTAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.24, C:0.15, G:0.07, T:0.54
Consensus pattern (23 bp):
TAACATATCTTGTTTTTATTGAC
Found at i:63587622 original size:42 final size:42
Alignment explanation
Indices: 63587547--63587856 Score: 349
Period size: 43 Copynumber: 7.3 Consensus size: 42
63587537 GTTTTACGAG
* *
63587547 AAGCGCCGCTAAAGGT-TTGTTCTATAGCGGCGTTTGTGAAA
1 AAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGAAA
* *
63587588 AAGTGCCGCTAAAGATCCTGATCTATAGCGGCGTTTGTCG-AA
1 AAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGT-GAAA
* **
63587630 AAGCACCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGA
1 AAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGAAA
* * * *
63587672 AAGCGCCCCAAAAGGT-TTAGATCTATAGCGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCCT-GATCTATAGCGGCGTTTGT-GAAA
* * *
63587715 AAGCGTCGCTAAAGGTCTTGGTCTATAGCGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGA-AA
* *
63587758 AAGTGCCGCTAAAGGTCAC-GGTCTATAGCGGCGTTTGTGAGAA
1 AAGCGCCGCTAAAGGTC-CTGATCTATAGCGGCGTTTGTGA-AA
* * *
63587801 AAGCGCCGCTAAAGGTCTTGATTTATAGCGGCGTTTGTGGAA
1 AAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGAAA
* *
63587843 ACGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
63587857 TTAGTGACGC
Statistics
Matches: 231, Mismatches: 29, Indels: 17
0.83 0.10 0.06
Matches are distributed among these distances:
41 16 0.07
42 104 0.45
43 109 0.47
44 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (42 bp):
AAGCGCCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGAAA
Found at i:63587740 original size:43 final size:43
Alignment explanation
Indices: 63587547--63587856 Score: 371
Period size: 42 Copynumber: 7.3 Consensus size: 43
63587537 GTTTTACGAG
* *
63587547 AAGCGCCGCTAAAGGT-TTGTTCTATAGCGGCGTTTGT-GAAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
* * * *
63587588 AAGTGCCGCTAAAGATCCTGATCTATAGCGGCGTTTGT-CGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
* *
63587630 AAGCACCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGG-A
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
* *
63587672 AAGCGCCCCAAAAGGT-TTAGATCTATAGCGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCTT-GATCTATAGCGGCGTTTGTGGGAA
* * **
63587715 AAGCGTCGCTAAAGGTCTTGGTCTATAGCGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
* ** * *
63587758 AAGTGCCGCTAAAGGTCACGGTCTATAGCGGCGTTTGTGAGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
*
63587801 AAGCGCCGCTAAAGGTCTTGATTTATAGCGGCGTTTGT-GGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
* *
63587843 ACGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
63587857 TTAGTGACGC
Statistics
Matches: 231, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
41 15 0.06
42 107 0.46
43 107 0.46
44 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
Found at i:63587803 original size:86 final size:85
Alignment explanation
Indices: 63587547--63587839 Score: 387
Period size: 86 Copynumber: 3.5 Consensus size: 85
63587537 GTTTTACGAG
* *
63587547 AAGCGCCGCTAAAGGT-TTGTTCTATAGCGGCGTTTGTGAAAAAGTGCCGCTAAAGATC-CTGAT
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAAAAAGTGCCGCTAAAGGTCAC-GAT
*
63587610 CTATAGCGGCGTTTGT-CGAA
65 CTATAGCGGCGTTTGTGAGAA
* * ** * * * *
63587630 AAGCACCGCTAAAGGTCCTGATCTATAGCGGCGTTTGTGGGAAAGCGCCCCAAAAGGTTTA-GAT
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAAAAAGTGCCGCTAAAGG-TCACGAT
*
63587694 CTATAGCGGCGTTTGTGGGAA
65 CTATAGCGGCGTTTGTGAGAA
* * *
63587715 AAGCGTCGCTAAAGGTCTTGGTCTATAGCGGCGTTTGTGATAAAAGTGCCGCTAAAGGTCACGGT
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGA-AAAAGTGCCGCTAAAGGTCACGAT
63587780 CTATAGCGGCGTTTGTGAGAA
65 CTATAGCGGCGTTTGTGAGAA
*
63587801 AAGCGCCGCTAAAGGTCTTGATTTATAGCGGCGTTTGTG
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTG
63587840 GAAACGCGCC
Statistics
Matches: 178, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
83 15 0.08
84 51 0.29
85 41 0.23
86 71 0.40
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (85 bp):
AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGAAAAAGTGCCGCTAAAGGTCACGATC
TATAGCGGCGTTTGTGAGAA
Found at i:63588467 original size:51 final size:51
Alignment explanation
Indices: 63588380--63588740 Score: 454
Period size: 51 Copynumber: 7.1 Consensus size: 51
63588370 CACAAGGAAG
* * * * * *
63588380 AGTT-CATTTGTGAACTGTCTAAACTACGTATATGCGTACTAATTATATTA
1 AGTTCCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTGATTATATTA
* *
63588430 AGTTCCATGTGTGAACTATCTAAACAAAGTATGTGCGTGTTGATTATATTA
1 AGTTCCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTGATTATATTA
* * * * *
63588481 AGTTCCATGTGTGAATTGTCTAAACCAGGTATGTGCATGCTGGTTATATTA
1 AGTTCCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTGATTATATTA
* * * *
63588532 AGTTCTATGTGTGAACTGTCTAAACCAAGTATGTGTGTGCTAATTATATTA
1 AGTTCCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTGATTATATTA
* * * * * *
63588583 AGCTCCATTTGTGAACTATCTAAAAAAAGTATGCGCGTGTTGATTATATTA
1 AGTTCCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTGATTATATTA
* *
63588634 AGTTCCATGTGTGAACTGTCTAAACCAAGTATGTGCGTGTTGATTATATTA
1 AGTTCCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTGATTATATTA
* * * *
63588685 AGTTCCATGTGTTAACTATCTAAAAAAAGTATGTGCGTGCTGATTATATTC
1 AGTTCCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTGATTATATTA
63588736 AGTTC
1 AGTTC
63588741 TATAAGCAAA
Statistics
Matches: 266, Mismatches: 44, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
50 4 0.02
51 262 0.98
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (51 bp):
AGTTCCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTGATTATATTA
Found at i:63588666 original size:153 final size:152
Alignment explanation
Indices: 63588380--63588734 Score: 512
Period size: 153 Copynumber: 2.3 Consensus size: 152
63588370 CACAAGGAAG
* * * * * *
63588380 AGTTCATTTGTGAACTGTCTAAACTACGTATATGCGTACTAATTATATTAAGTTCCATGTGTGAA
1 AGTTCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTAATTATATTAAGCTCCATGTGTGAA
* * * *
63588445 CTATCTAAACAAAGTATGTGCGTGTTGATTATATTAAGTTCCATGTGTGAATTGTCTAAACCAGG
66 CTATCTAAAAAAAGTATGCGCGTGTTGATTATATTAAGTTCCATGTGTGAACTGTCTAAACCAAG
*
63588510 TATGTGCATGCTGGTTATATTA
131 TATGTGCATGCTGATTATATTA
* * *
63588532 AGTTCTATGTGTGAACTGTCTAAACCAAGTATGTGTGTGCTAATTATATTAAGCTCCATTTGTGA
1 AGTTC-ATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTAATTATATTAAGCTCCATGTGTGA
63588597 ACTATCTAAAAAAAGTATGCGCGTGTTGATTATATTAAGTTCCATGTGTGAACTGTCTAAACCAA
65 ACTATCTAAAAAAAGTATGCGCGTGTTGATTATATTAAGTTCCATGTGTGAACTGTCTAAACCAA
* *
63588662 GTATGTGCGTGTTGATTATATTA
130 GTATGTGCATGCTGATTATATTA
* * * *
63588685 AGTTCCATGTGTTAACTATCTAAAAAAAGTATGTGCGTGCTGATTATATT
1 AGTT-CATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTAATTATATT
63588735 CAGTTCTATA
Statistics
Matches: 180, Mismatches: 21, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
152 5 0.03
153 174 0.97
154 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (152 bp):
AGTTCATGTGTGAACTGTCTAAACAAAGTATGTGCGTGCTAATTATATTAAGCTCCATGTGTGAA
CTATCTAAAAAAAGTATGCGCGTGTTGATTATATTAAGTTCCATGTGTGAACTGTCTAAACCAAG
TATGTGCATGCTGATTATATTA
Found at i:63588918 original size:25 final size:25
Alignment explanation
Indices: 63588890--63588937 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
63588880 AGCTGTGGAA
* *
63588890 TATGTGAGTTGTGATATGTGAGCTC
1 TATGTAAGTGGTGATATGTGAGCTC
* *
63588915 TATGTAAGTGGTTATGTGTGAGC
1 TATGTAAGTGGTGATATGTGAGC
63588938 CAACAAAGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.21, C:0.06, G:0.33, T:0.40
Consensus pattern (25 bp):
TATGTAAGTGGTGATATGTGAGCTC
Found at i:63590173 original size:42 final size:43
Alignment explanation
Indices: 63590103--63590221 Score: 132
Period size: 42 Copynumber: 2.7 Consensus size: 43
63590093 GTTATGCGCC
** *
63590103 AAAAATGAGTAAGACCATAGCTTTAAGATACTATGACAT-GAT
1 AAAAATGAGTAAGACCATAGCTGAAAGATACTATAACATAGAT
*
63590145 AAAAATGAGTAAGACCATAGCTGAAAGATGCTATAACATCAAGAT
1 AAAAATGAGTAAGACCATAGCTGAAAGATACTATAACAT--AGAT
* * * *
63590190 AGAATATGATTAAGACCATATCTGAAAAATAC
1 A-AAAATGAGTAAGACCATAGCTGAAAGATAC
63590222 AATGGCATCC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 35 0.55
45 4 0.06
46 25 0.39
ACGTcount: A:0.48, C:0.13, G:0.16, T:0.24
Consensus pattern (43 bp):
AAAAATGAGTAAGACCATAGCTGAAAGATACTATAACATAGAT
Found at i:63590518 original size:67 final size:67
Alignment explanation
Indices: 63590387--63590554 Score: 183
Period size: 67 Copynumber: 2.5 Consensus size: 67
63590377 AGGTATAGGA
* * * * * * *
63590387 CCATAGTTAGACTATGCCAACCAATAGAGTCCGCCAGGACATTAAACATGTGGTGTACTATGTAA
1 CCATAGCTCGACTATGACAACAAATATAGTCTGCCAGGACATTAAACATGGGGTGTACTATGTAA
63590452 GT
66 GT
* ** * * * *
63590454 CCATTGCTCGACTATGGGAACAAATATAGTCTGCCATGACATTAAATATGGGGTGTGCTGTGTAA
1 CCATAGCTCGACTATGACAACAAATATAGTCTGCCAGGACATTAAACATGGGGTGTACTATGTAA
63590519 GT
66 GT
* * *
63590521 CCATAGCTTGACTATGACAATAAAGATAGTCTGC
1 CCATAGCTCGACTATGACAACAAATATAGTCTGC
63590555 TGAGAAAAAA
Statistics
Matches: 82, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
67 82 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (67 bp):
CCATAGCTCGACTATGACAACAAATATAGTCTGCCAGGACATTAAACATGGGGTGTACTATGTAA
GT
Found at i:63590572 original size:67 final size:67
Alignment explanation
Indices: 63590430--63590572 Score: 144
Period size: 67 Copynumber: 2.1 Consensus size: 67
63590420 CCAGGACATT
* * ** * *
63590430 AAACATGTGGTGTACTATGTAAGTCCATTGCTCGACTATGGGAACAAATATAGTCTGCCATGACA
1 AAACATGGGGTGTACTATGTAAGTCCATAGCTCGACTATGACAACAAAGATAGTCTGCCATGAAA
**
63590495 TT
66 AA
* * * * * *
63590497 AAATATGGGGTGTGCTGTGTAAGTCCATAGCTTGACTATGACAATAAAGATAGTCTGCTGA-GAA
1 AAACATGGGGTGTACTATGTAAGTCCATAGCTCGACTATGACAACAAAGATAGTCTGC-CATGAA
63590561 AAA
65 AAA
63590564 AAACATGGG
1 AAACATGGG
63590573 TGGGAAATAA
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
67 59 0.98
68 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (67 bp):
AAACATGGGGTGTACTATGTAAGTCCATAGCTCGACTATGACAACAAAGATAGTCTGCCATGAAA
AA
Found at i:63602439 original size:78 final size:78
Alignment explanation
Indices: 63602308--63602453 Score: 213
Period size: 78 Copynumber: 1.9 Consensus size: 78
63602298 GATCTTAGCC
63602308 ATCGCTAAATAATGATTCGATGCTACTCACTCAACTTGTCAAGAATCCACAATTTATGTTGGATC
1 ATCGCTAAATAATGATTCGATGCTACTCACTCAACTTGTCAAGAATCCACAATTTATGTTGGATC
63602373 TCAACCACCACGG
66 TCAACCACCACGG
* * * ** * *
63602386 ATCGCTAAATAA-GAATTTGATGTTTCTCACTCATGTTTTCAAGAATCCGCAATTTATGTTGGAT
1 ATCGCTAAATAATG-ATTCGATGCTACTCACTCAACTTGTCAAGAATCCACAATTTATGTTGGAT
63602450 CTCA
65 CTCA
63602454 GATAGCGAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
77 1 0.02
78 59 0.98
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (78 bp):
ATCGCTAAATAATGATTCGATGCTACTCACTCAACTTGTCAAGAATCCACAATTTATGTTGGATC
TCAACCACCACGG
Found at i:63604150 original size:15 final size:17
Alignment explanation
Indices: 63604120--63604151 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
63604110 CTTTTTCTTT
63604120 CAAAACACATAATATTC
1 CAAAACACATAATATTC
63604137 CAAAA-ACA-AATATTC
1 CAAAACACATAATATTC
63604152 TCAATCCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (17 bp):
CAAAACACATAATATTC
Found at i:63607382 original size:26 final size:26
Alignment explanation
Indices: 63607352--63607429 Score: 69
Period size: 26 Copynumber: 3.2 Consensus size: 26
63607342 CTATTCTCCC
63607352 CCTTAGTAAGCCTTCCCCACTCACCA
1 CCTTAGTAAGCCTTCCCCACTCACCA
* * *
63607378 CCTTA-T--G---TCCCCTATTCTCCC
1 CCTTAGTAAGCCTTCCCC-ACTCACCA
*
63607399 CCTTAGTAAGCCTTTCCCACTCACCA
1 CCTTAGTAAGCCTTCCCCACTCACCA
63607425 CCTTA
1 CCTTA
63607430 TGTCTCTTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
20 5 0.13
21 10 0.26
22 1 0.03
23 1 0.03
24 1 0.03
25 1 0.03
26 15 0.39
27 4 0.11
ACGTcount: A:0.19, C:0.45, G:0.06, T:0.29
Consensus pattern (26 bp):
CCTTAGTAAGCCTTCCCCACTCACCA
Found at i:63607405 original size:47 final size:47
Alignment explanation
Indices: 63607336--63607433 Score: 187
Period size: 47 Copynumber: 2.1 Consensus size: 47
63607326 TACATCATAT
63607336 TGTCCCCTATTCTCCCCCTTAGTAAGCCTTCCCCACTCACCACCTTA
1 TGTCCCCTATTCTCCCCCTTAGTAAGCCTTCCCCACTCACCACCTTA
*
63607383 TGTCCCCTATTCTCCCCCTTAGTAAGCCTTTCCCACTCACCACCTTA
1 TGTCCCCTATTCTCCCCCTTAGTAAGCCTTCCCCACTCACCACCTTA
63607430 TGTC
1 TGTC
63607434 TCTTTCTCTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.16, C:0.45, G:0.07, T:0.32
Consensus pattern (47 bp):
TGTCCCCTATTCTCCCCCTTAGTAAGCCTTCCCCACTCACCACCTTA
Found at i:63608414 original size:21 final size:21
Alignment explanation
Indices: 63608388--63608439 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
63608378 GTAGTGGCGA
* **
63608388 TGAGATTAGTTATTGTAGTGG
1 TGAGATTAGATATTGTAGCAG
*
63608409 TGAGATTGGATATTGTAGCAG
1 TGAGATTAGATATTGTAGCAG
63608430 TGAGATTAGA
1 TGAGATTAGA
63608440 AACAATGGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.02, G:0.33, T:0.37
Consensus pattern (21 bp):
TGAGATTAGATATTGTAGCAG
Found at i:63625502 original size:28 final size:28
Alignment explanation
Indices: 63625422--63625530 Score: 96
Period size: 28 Copynumber: 3.9 Consensus size: 28
63625412 ATGGGCCGAG
* *
63625422 TGGGC-CACACGGGTGTGCGGGCCCACA
1 TGGGCACACACGAGCGTGCGGGCCCACA
* * *
63625449 CGGGCACACAC-AGGCGTACGGACCCACA
1 TGGGCACACACGA-GCGTGCGGGCCCACA
*
63625477 TGGGCACACACGAGCGTGTGGGCCCACA
1 TGGGCACACACGAGCGTGCGGGCCCACA
** * * *
63625505 TAAGCACACACAAACGTGTGGGCCCA
1 TGGGCACACACGAGCGTGCGGGCCCA
63625531 TTTTTACCAA
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
27 4 0.06
28 61 0.92
29 1 0.02
ACGTcount: A:0.25, C:0.34, G:0.32, T:0.09
Consensus pattern (28 bp):
TGGGCACACACGAGCGTGCGGGCCCACA
Found at i:63634580 original size:27 final size:27
Alignment explanation
Indices: 63634550--63634734 Score: 232
Period size: 27 Copynumber: 6.9 Consensus size: 27
63634540 AGAATGACCA
* *
63634550 AAATACCCCCATACGATAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
*
63634577 AAATACCCCTATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
* * *
63634604 AAATACCCTCATAGGAT-AAATCGAACG
1 AAATACCCCCATAGGGTAAAAT-GATCG
*
63634631 AAATACCCCCATAGGGT-AAATCGATCA
1 AAATACCCCCATAGGGTAAAAT-GATCG
*
63634658 AAATACACCCA-AGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGATCG
* *
63634684 AAATATCCCCATAGGGTAAAATGATAG
1 AAATACCCCCATAGGGTAAAATGATCG
*
63634711 AAATACCCCTATAGGGTAAAATGA
1 AAATACCCCCATAGGGTAAAATGA
63634735 CTGTTATACC
Statistics
Matches: 137, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 22 0.16
27 115 0.84
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGATCG
Found at i:63634682 original size:80 final size:80
Alignment explanation
Indices: 63634550--63634730 Score: 228
Period size: 80 Copynumber: 2.2 Consensus size: 80
63634540 AGAATGACCA
* * *
63634550 AAATACCCCCATACGATAAAATGATCGAAATACCCCTATAGGGTAAAATGATCGAAATA-CCCTC
1 AAATACCCCCATAGGGT-AAATGATCAAAATACCCCTATAGGGTAAAATGATCGAAATATCCC-C
63634614 ATAGGAT-AAATCGA-ACG
64 ATAGGATAAAAT-GATA-G
63634631 AAATACCCCCATAGGGTAAATCGATCAAAATACACCC-A-AGGGTAAAATGATCGAAATATCCCC
1 AAATACCCCCATAGGGTAAAT-GATCAAAATAC-CCCTATAGGGTAAAATGATCGAAATATCCCC
*
63634694 ATAGGGTAAAATGATAG
64 ATAGGATAAAATGATAG
*
63634711 AAATACCCCTATAGGGTAAA
1 AAATACCCCCATAGGGTAAA
63634731 ATGACTGTTA
Statistics
Matches: 90, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
80 53 0.59
81 34 0.38
82 3 0.03
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (80 bp):
AAATACCCCCATAGGGTAAATGATCAAAATACCCCTATAGGGTAAAATGATCGAAATATCCCCAT
AGGATAAAATGATAG
Found at i:63640301 original size:44 final size:41
Alignment explanation
Indices: 63640253--63640360 Score: 136
Period size: 36 Copynumber: 2.7 Consensus size: 41
63640243 TTTACATGGG
63640253 CATAAGTATTTATATTTTCCACTTTACAAATAAGTTACACCATT
1 CATAAGTATTTATATTTT-CACTTTAC-AA-AAGTTACACCATT
*
63640297 CATAAGTATTTATATTTT--GTTT---AAAGTTACACCATT
1 CATAAGTATTTATATTTTCACTTTACAAAAGTTACACCATT
63640333 CATAAGTATTTATATTTTTCACTTTACA
1 CATAAGTATTTATA-TTTTCACTTTACA
63640361 TAGCTCGTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
36 27 0.48
37 5 0.09
39 3 0.05
41 3 0.05
44 18 0.32
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (41 bp):
CATAAGTATTTATATTTTCACTTTACAAAAGTTACACCATT
Found at i:63645363 original size:13 final size:13
Alignment explanation
Indices: 63645345--63645369 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63645335 CCGAAACTAG
63645345 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
63645358 AAAGAAAAAAAA
1 AAAGAAAAAAAA
63645370 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:63646544 original size:39 final size:39
Alignment explanation
Indices: 63646501--63646708 Score: 303
Period size: 39 Copynumber: 5.3 Consensus size: 39
63646491 ACTAAGATCT
63646501 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
63646540 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
* *
63646579 GAAGGCATTTGTACGAGATACTAATTCTGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
* * *
63646618 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCC
* *
63646658 GAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCC
63646698 GAAGGCATTTG
1 GAAGGCATTTG
63646709 AACGAGGAGC
Statistics
Matches: 154, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 108 0.70
40 46 0.30
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCC
Found at i:63646590 original size:78 final size:79
Alignment explanation
Indices: 63646447--63646708 Score: 306
Period size: 78 Copynumber: 3.3 Consensus size: 79
63646437 TTGAATGATG
* * *
63646447 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGAT-CTGAAGGC
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAA-ATCCGGGCTAAG-TCCCGAAGGC
63646507 ATTTGTGCGAGATACTAAT
61 ATTTGTGCGAGATACTAAT
*
63646526 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
*
63646590 TACGAGATACTAAT
66 TGCGAGATACTAAT
* * *
63646604 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
63646669 TGCGA-ATTACT-AT
66 TGCGAGA-TACTAAT
* *
63646682 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
63646709 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
78 83 0.52
79 53 0.33
80 24 0.15
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAT
Found at i:63648838 original size:21 final size:21
Alignment explanation
Indices: 63648814--63648868 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
63648804 CCTGATTGAA
*
63648814 TGATGCTTTGAATCGA-TTATT
1 TGATGCTTTAAATC-ACTTATT
*
63648835 TGATG-TTTAAATCACTTGTT
1 TGATGCTTTAAATCACTTATT
63648855 TGATGCTTTAAATC
1 TGATGCTTTAAATC
63648869 TTTATGCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 16 0.53
21 13 0.43
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.47
Consensus pattern (21 bp):
TGATGCTTTAAATCACTTATT
Found at i:63650836 original size:24 final size:24
Alignment explanation
Indices: 63650769--63650885 Score: 85
Period size: 24 Copynumber: 4.7 Consensus size: 24
63650759 TTTTAATAAT
*
63650769 AATTATA-TTAAGAA-TATTATTA
1 AATTATATTTAATAATTATTATTA
* * * *
63650791 AATTATATATCATTATTTTTATTA
1 AATTATATTTAATAATTATTATTA
63650815 AATTATATTTAATAATTATTATATTA
1 AATTATATTTAATAATTA-T-TATTA
* *
63650841 AAATATGATTAAATTATTTATTATTATTA
1 AATTAT-ATTTAA-TA---ATTATTATTA
*
63650870 AATTACATTTAATAAT
1 AATTATATTTAATAAT
63650886 CCTATTAAAA
Statistics
Matches: 72, Mismatches: 14, Indels: 16
0.71 0.14 0.16
Matches are distributed among these distances:
22 7 0.10
23 3 0.04
24 23 0.32
25 1 0.01
26 10 0.14
27 7 0.10
28 7 0.10
29 9 0.12
30 1 0.01
31 4 0.06
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (24 bp):
AATTATATTTAATAATTATTATTA
Found at i:63650852 original size:26 final size:29
Alignment explanation
Indices: 63650802--63650881 Score: 78
Period size: 29 Copynumber: 2.9 Consensus size: 29
63650792 ATTATATATC
* *
63650802 ATTATTTTTATTAAATTATATTT-AA-TA
1 ATTATTATTATTAAAATATATTTAAATTA
63650829 ATTATTA-TATTAAAATATGA-TTAAATTA
1 ATTATTATTATTAAAATAT-ATTTAAATTA
* * *
63650857 TTTATTATTATTAAATTACATTTAA
1 ATTATTATTATTAAAATATATTTAA
63650882 TAATCCTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
26 12 0.28
27 9 0.21
28 9 0.21
29 13 0.30
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (29 bp):
ATTATTATTATTAAAATATATTTAAATTA
Found at i:63651461 original size:13 final size:13
Alignment explanation
Indices: 63651443--63651469 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63651433 GAAAAGTAAG
63651443 AGTATCCAAGGGT
1 AGTATCCAAGGGT
63651456 AGTATCCAAGGGT
1 AGTATCCAAGGGT
63651469 A
1 A
63651470 CTTATCTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (13 bp):
AGTATCCAAGGGT
Found at i:63664556 original size:294 final size:294
Alignment explanation
Indices: 63664027--63664621 Score: 1136
Period size: 294 Copynumber: 2.0 Consensus size: 294
63664017 ATTATGTCCC
*
63664027 ATCCAAAGTGAGACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
1 ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
63664092 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
66 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
63664157 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
131 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
* *
63664222 TACTTTCCTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCGTTGTACTAAACAAG
196 TACTTTACTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCATTGTACTAAACAAG
63664287 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
261 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
63664321 ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
1 ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
* *
63664386 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACTTAGGAATAAGAGACTAAATG
66 GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
63664451 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
131 TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
*
63664516 TACTTTATTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCATTGTACTAAACAAG
196 TACTTTACTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCATTGTACTAAACAAG
63664581 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
261 ATAAACCATATATCTCCACTAGCTTCTCCACCTT
63664615 ATCCAAA
1 ATCCAAA
63664622 TTACCATCAA
Statistics
Matches: 295, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
294 295 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (294 bp):
ATCCAAAGTGACACAAAGCACATCATAGCATCACCTAGCCTTGACTTATACCATCAAATCATTTG
GTCAATTGGCTCTCATATATCAATGATAGCTTAACACATGGCACCTAGGAATAAGAGACTAAAGG
TATATAAGGCCCTGAACAAACGACGGCATGGGATTGATCCATTAGTCTTTTTTCTCACCCCTCTT
TACTTTACTCTACTTATCATCTCCAGTTATCTTATTCGATGGTTCTTCGCATTGTACTAAACAAG
ATAAACCATATATCTCCACTAGCTTCTCCACCTT
Found at i:63665837 original size:3 final size:3
Alignment explanation
Indices: 63665831--63665860 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
63665821 AGAAAAAGAA
*
63665831 GAG GAG GAG GAG GGG GAG GAG GAG GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
63665861 AAGAAGAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:63666825 original size:3 final size:3
Alignment explanation
Indices: 63666817--63666854 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
63666807 TTTTACAGTC
*
63666817 TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT T-T TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
63666855 GTTATTAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TCT
Found at i:63667040 original size:30 final size:30
Alignment explanation
Indices: 63666976--63667044 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
63666966 ATGTTAGTGG
63666976 GTGACTGATTTGTCATTTTTTGATAACATTA
1 GTGACTGATTTGTCATTTTTT-ATAACATTA
* *
63667007 GTGACTGTTTTGTTATTTTTT-TAA-AGTTGA
1 GTGACTGATTTGTCATTTTTTATAACA-TT-A
63667037 GTGACTGA
1 GTGACTGA
63667045 AATGAAACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
28 1 0.03
29 5 0.15
30 8 0.24
31 19 0.58
ACGTcount: A:0.23, C:0.07, G:0.20, T:0.49
Consensus pattern (30 bp):
GTGACTGATTTGTCATTTTTTATAACATTA
Found at i:63669413 original size:31 final size:29
Alignment explanation
Indices: 63669370--63669433 Score: 69
Period size: 29 Copynumber: 2.1 Consensus size: 29
63669360 GTCATATTTT
*
63669370 GTACATGTACTTTTATAAAATGT-TCAATGTG
1 GTACATGTAC-TTT-GAAAATGTCT-AATGTG
63669401 GTACATAG-ACTTTGAAAATGTCTAATGTG
1 GTACAT-GTACTTTGAAAATGTCTAATGTG
63669430 GTAC
1 GTAC
63669434 TTTATTTATC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
29 17 0.57
30 4 0.13
31 8 0.27
32 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.38
Consensus pattern (29 bp):
GTACATGTACTTTGAAAATGTCTAATGTG
Found at i:63673492 original size:45 final size:46
Alignment explanation
Indices: 63673442--63673529 Score: 115
Period size: 45 Copynumber: 1.9 Consensus size: 46
63673432 TTCAATTTTG
*
63673442 AGAAAACCACATTCATTTCCAAATGATTT-CATTTCTCTATTTCAA
1 AGAAAACCACAATCATTTCCAAATGATTTCCATTTCTCTATTTCAA
* *** *
63673487 AGAAAACCATAATCATTTTTTAATGTTTTCCATTTCTCTATTT
1 AGAAAACCACAATCATTTCCAAATGATTTCCATTTCTCTATTT
63673530 ATATTCATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 23 0.64
46 13 0.36
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.43
Consensus pattern (46 bp):
AGAAAACCACAATCATTTCCAAATGATTTCCATTTCTCTATTTCAA
Found at i:63677723 original size:24 final size:25
Alignment explanation
Indices: 63677696--63677742 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
63677686 ACTGGTCATA
63677696 GAGAGAATTGAGGAG-GAATATTTG
1 GAGAGAATTGAGGAGAGAATATTTG
*
63677720 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAGAGAATATT
63677743 GGGATTTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26
Consensus pattern (25 bp):
GAGAGAATTGAGGAGAGAATATTTG
Found at i:63678891 original size:27 final size:27
Alignment explanation
Indices: 63678856--63679027 Score: 247
Period size: 27 Copynumber: 6.4 Consensus size: 27
63678846 CCCTAAAATA
* * *
63678856 GGTAAAATGACCAAAATACCACTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
63678883 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
63678910 GGTAAAATGATCGAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
63678937 GGTAAAATAACCTG-AATACCCCCATAG
1 GGTAAAATGACC-GAAATACCCCCATAG
**
63678964 GGTAAAATGACTAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
63678991 GGTAAAATGACCGAAATATCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
63679018 GGTAAAATGA
1 GGTAAAATGA
63679028 TTGTTATACC
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
27 128 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:63695411 original size:40 final size:40
Alignment explanation
Indices: 63695356--63695566 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
63695346 ATTTGAATGA
*
63695356 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
63695396 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
63695436 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
63695476 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
63695516 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
63695556 TATCC-GGCTAA
1 TATCCGGGCTAA
63695567 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:63707165 original size:90 final size:90
Alignment explanation
Indices: 63707012--63707182 Score: 243
Period size: 90 Copynumber: 1.9 Consensus size: 90
63707002 TGCAAATTGG
* * * **
63707012 AATCACAGTTACTCGTCAATGACTCTCGCCTTTCTTTTCCCTTTCGACAGTGCAGCATCGTCTTT
1 AATCACAGTTACTCGTCAACGAATCTCGCCTTTCTTTTCCCTCTCGACAGCCCAGCATCGTCTTT
*
63707077 AGCTACGTTCGATAATACAAACACA
66 AGCTACGTTCAATAATACAAACACA
* * ** *
63707102 AATCACAGTTGCTCGTCAACGAATCTTGCCTTTCTTTTCCCTCTCGATGGCCCATCATCGTCTTT
1 AATCACAGTTACTCGTCAACGAATCTCGCCTTTCTTTTCCCTCTCGACAGCCCAGCATCGTCTTT
63707167 AGCTACGTTCAATAAT
66 AGCTACGTTCAATAAT
63707183 CAATAGATAA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
90 70 1.00
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.34
Consensus pattern (90 bp):
AATCACAGTTACTCGTCAACGAATCTCGCCTTTCTTTTCCCTCTCGACAGCCCAGCATCGTCTTT
AGCTACGTTCAATAATACAAACACA
Found at i:63708302 original size:21 final size:21
Alignment explanation
Indices: 63708276--63708318 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
63708266 CTATGGTTAC
* *
63708276 ACTGTGAGGTTCGCAAGGTAT
1 ACTGTGAGGTCCACAAGGTAT
63708297 ACTGTGAGGTCCACAAGGTAT
1 ACTGTGAGGTCCACAAGGTAT
63708318 A
1 A
63708319 TTGTTAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (21 bp):
ACTGTGAGGTCCACAAGGTAT
Found at i:63711313 original size:9 final size:9
Alignment explanation
Indices: 63711272--63711329 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
63711262 TCGTTTTTAA
63711272 AAAAATAAT
1 AAAAATAAT
*
63711281 AATAA-AAT
1 AAAAATAAT
*
63711289 AACAAGATACT
1 AA-AA-ATAAT
*
63711300 AAAAATCAT
1 AAAAATAAT
63711309 AAAAATAAT
1 AAAAATAAT
*
63711318 AATAATAAT
1 AAAAATAAT
63711327 AAA
1 AAA
63711330 TAAAATTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
8 5 0.13
9 26 0.68
10 3 0.08
11 4 0.11
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (9 bp):
AAAAATAAT
Found at i:63712802 original size:44 final size:44
Alignment explanation
Indices: 63712738--63712979 Score: 310
Period size: 44 Copynumber: 5.5 Consensus size: 44
63712728 ACCAGTATGG
63712738 GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
* * *
63712782 GAAGACAAGATCTG-TCATCTTGGATCTACTTCACGCCAATACGT
1 GAAGACAAGATCTGCT-ATCTTTGATCTACTTCATGCCAATACAT
*
63712826 GAAGACAAGATCTGCTACCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
* * ** **
63712870 GAAAACAAGATCTGCTTTCTTCAATCTACTTCACCACCAAT--AT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCA-TGCCAATACAT
* *
63712913 GGAAAGACAAGATCTGTTATCTTTGATCTACTTCATGCTAATACAT
1 -G-AAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
*
63712959 GAAGACAAGATCTACTATCTT
1 GAAGACAAGATCTGCTATCTT
63712980 CAGCCTGCTC
Statistics
Matches: 167, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
43 3 0.02
44 128 0.77
45 34 0.20
46 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTTGATCTACTTCATGCCAATACAT
Found at i:63712848 original size:88 final size:88
Alignment explanation
Indices: 63712709--63712980 Score: 395
Period size: 89 Copynumber: 3.1 Consensus size: 88
63712699 ACTAGATGCG
*
63712709 ATCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
1 ATCTTCGATCTACTTCACCACCAATAT-GGAAGACAAGATCTGCTATCTTTGATCTACTTCATGC
63712774 CAATACATGAAGACAAGATCTG-T
65 CAATACATGAAGACAAGATCTGCT
* * * *
63712797 CATCTTGGATCTACTTCA-CGCCAATACGTGAAGACAAGATCTGCTACCTTTGATCTACTTCATG
1 -ATCTTCGATCTACTTCACCACCAATATG-GAAGACAAGATCTGCTATCTTTGATCTACTTCATG
*
63712861 CCAATACATGAAAACAAGATCTGCT
64 CCAATACATGAAGACAAGATCTGCT
* * *
63712886 TTCTTCAATCTACTTCACCACCAATATGGAAAGACAAGATCTGTTATCTTTGATCTACTTCATGC
1 ATCTTCGATCTACTTCACCACCAATATGG-AAGACAAGATCTGCTATCTTTGATCTACTTCATGC
* *
63712951 TAATACATGAAGACAAGATCTACT
65 CAATACATGAAGACAAGATCTGCT
63712975 ATCTTC
1 ATCTTC
63712981 AGCCTGCTCC
Statistics
Matches: 162, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
87 1 0.01
88 77 0.48
89 84 0.52
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (88 bp):
ATCTTCGATCTACTTCACCACCAATATGGAAGACAAGATCTGCTATCTTTGATCTACTTCATGCC
AATACATGAAGACAAGATCTGCT
Found at i:63713069 original size:88 final size:87
Alignment explanation
Indices: 63712954--63713295 Score: 459
Period size: 88 Copynumber: 3.9 Consensus size: 87
63712944 TTCATGCTAA
* * * * ** * *
63712954 TACATGAAGACAAGATCTACTATCTTCAGCCTGCTCCGTTACAACCCAGGGAAGCAAGGCTGGTG
1 TACAGGAAGGCAAGAT-TGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
* *
63713019 TCTTTGATCTGCTTCACTGTCAG
65 TCTTCGATCTGCTTCACTGTCGG
** *
63713042 TGTAGGAAGGCAAGATTGGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGATT-GCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
*
63713107 TCTTCGATCTGCTTCACTATCGG
65 TCTTCGATCTGCTTCACTGTCGG
* * *
63713130 TACAGGAAGGCAAGATTTGTTATCTTCAACCTGCTCCACTACAACCCAGGGAGGTAAGCCTGGTA
1 TACAGGAAGGCAAGA-TTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
63713195 TCTTCGATCTGCTTCACTGTCGG
65 TCTTCGATCTGCTTCACTGTCGG
* * **
63713218 TACAGGAAGGCAAGATCTGCTATCTTCAACATGATCCACTATGACCCAGGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGAT-TGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
63713283 TCTTCGATCTGCT
65 TCTTCGATCTGCT
63713296 CTGCTACTGC
Statistics
Matches: 223, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
87 2 0.01
88 219 0.98
89 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (87 bp):
TACAGGAAGGCAAGATTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTAT
CTTCGATCTGCTTCACTGTCGG
Found at i:63713111 original size:43 final size:43
Alignment explanation
Indices: 63713062--63713296 Score: 141
Period size: 43 Copynumber: 5.4 Consensus size: 43
63713052 CAAGATTGGC
*
63713062 TATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGG
1 TATCTTCAACCTGCTCCACTACGACCCAAGGAGGCAAGGCTGG
* * * *** ** *
63713105 TATCTTCGATCTGCTTCACTATCGGTAC-AGGAAGGCAAGATTTGT
1 TATCTTCAACCTGCTCCACTA-CGACCCAAGG-AGGCAAG-GCTGG
* * * *
63713150 TATCTTCAACCTGCTCCACTACAACCCAGGGAGGTAAGCCTGG
1 TATCTTCAACCTGCTCCACTACGACCCAAGGAGGCAAGGCTGG
* * * * *** * *
63713193 TATCTTCGATCTGCTTCACTGTCGGTAC-AGGAAGGCAAGATCTGC
1 TATCTTCAACCTGCTCCACT-ACGACCCAAGG-AGGCAAG-GCTGG
* * * *
63713238 TATCTTCAACATGATCCACTATGACCCAGGGAGGCAAGGCTGG
1 TATCTTCAACCTGCTCCACTACGACCCAAGGAGGCAAGGCTGG
* *
63713281 TATCTTCGATCTGCTC
1 TATCTTCAACCTGCTC
63713297 TGCTACTGCT
Statistics
Matches: 133, Mismatches: 51, Indels: 16
0.67 0.25 0.08
Matches are distributed among these distances:
43 57 0.43
44 34 0.26
45 42 0.32
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (43 bp):
TATCTTCAACCTGCTCCACTACGACCCAAGGAGGCAAGGCTGG
Found at i:63713382 original size:176 final size:175
Alignment explanation
Indices: 63713021--63713546 Score: 520
Period size: 176 Copynumber: 3.0 Consensus size: 175
63713011 GGCTGGTGTC
** * * *
63713021 TTTGATCTGCTTCACTGTCAGTGTAGGAAGGCAAGAT-TGGCTATCTTCAACCTGCTCCACTACA
1 TTTGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCT-GCTATCTTCAACATGATCCACTACC
** * * * * * ** *
63713085 ACCCA-AGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTA-TCGGTACAGGAAGGCAAGATTT
65 ACCCAGA-GAGGCAAGGCTAATATCTTCGATCTGCTCCGCTACT-GCT-TAGGGAGATAAGATAT
* * ** *** * * ** *** *
63713148 GTTATCTTCAACCTGCTCCACTACAACCCAGGGAGGTAAGCCT-GGTATC
127 GTAAT-TTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCACAATT
* * **
63713197 TTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATCTTCAACATGATCCACTATGA
1 TTTGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAACATGATCCACTACCA
* ** *
63713262 CCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTCTGCTACTGCTTAGGGAGATAAGATATGTAA
66 CCCAGAGAGGCAAGGCTAATATCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATATGTAA
*
63713327 TTTTTAACCTATTCCACTGCTGTCCAGGGAGATAGGATTCACAATT
131 -TTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCACAATT
* * * * * *
63713373 TTTGATCTGCTTCACTGTCAGTACAGGAAGGCAATATCTGCTATCTTTAACCTGCTCCGCTGCCA
1 TTTGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAACATGATCCACTACCA
* * * *
63713438 CCGAGAGAGGCAAGGTTAATGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTGTAA
66 CCCAGAGAGGCAAGGCTAATATCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATATGTAA
*
63713503 TTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCTCAAT
131 TTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCACAAT
63713547 CCTCAAATTA
Statistics
Matches: 291, Mismatches: 54, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
175 82 0.28
176 207 0.71
177 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (175 bp):
TTTGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAACATGATCCACTACCA
CCCAGAGAGGCAAGGCTAATATCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATATGTAA
TTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCACAATT
Found at i:63713687 original size:218 final size:218
Alignment explanation
Indices: 63713371--63713942 Score: 966
Period size: 218 Copynumber: 2.6 Consensus size: 218
63713361 GGATTCACAA
* * *
63713371 TTTTT-GATCTGCTTCACTGTCAGTACAGGAAGGCAATATCTGCTATCTTTAACCTGCTCCGCTG
1 TTTTTCGATCTGCTTCACTGTCAGTACAGGGAGGCAAAATCTGCTATCTTTAGCCTGCTCCGCTG
* * *
63713435 CCACCGAGAGAGGCAAGGTTAATGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
66 CCACCGAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
63713500 TAATTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCTCAATCCTCAAATTATTCCACTA
131 TAATTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCTCAATCCTCAAATTATTCCACTA
63713565 CTGACCAGGGAGATAAGATTGGT
196 CTGACCAGGGAGATAAGATTGGT
* * *
63713588 TTTTTCGATCTGCTTCACTGTCAGTATAGGGAGGCAAAATCTACTATCTTTAGCCTGCTCCGCTA
1 TTTTTCGATCTGCTTCACTGTCAGTACAGGGAGGCAAAATCTGCTATCTTTAGCCTGCTCCGCTG
63713653 CCACCGAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
66 CCACCGAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
* * *
63713718 TAATTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCTCAATCCTCAACTTATTTCACTG
131 TAATTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCTCAATCCTCAAATTATTCCACTA
63713783 CTGACCAGGGAGATAAGATTGGT
196 CTGACCAGGGAGATAAGATTGGT
* * *
63713806 TTTTTCAATCTGCTTCACTGTTAGTACAGGGAGGCAAGATCTGCTATCTTTAGCCTGCTCCGCTG
1 TTTTTCGATCTGCTTCACTGTCAGTACAGGGAGGCAAAATCTGCTATCTTTAGCCTGCTCCGCTG
* * *
63713871 CCACCGAGGGAGGCAAGGCTAGTGTTTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTG
66 CCACCGAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
*
63713936 CAATTTT
131 TAATTTT
63713943 TTTTTAACCT
Statistics
Matches: 332, Mismatches: 22, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
217 5 0.02
218 327 0.98
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (218 bp):
TTTTTCGATCTGCTTCACTGTCAGTACAGGGAGGCAAAATCTGCTATCTTTAGCCTGCTCCGCTG
CCACCGAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTG
TAATTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCTCAATCCTCAAATTATTCCACTA
CTGACCAGGGAGATAAGATTGGT
Found at i:63714100 original size:86 final size:87
Alignment explanation
Indices: 63713897--63714122 Score: 319
Period size: 86 Copynumber: 2.6 Consensus size: 87
63713887 GGCTAGTGTT
* * **
63713897 TTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTTTTTTAACCTACTCTGCTG
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA----TTTTCAACCTACTCCACTG
*
63713962 CTACTCAGAGAGATAAGGCTTGGGAC
62 CTACTCAGAGAGATAAGGCTAGGGAC
* * *
63713988 TTCGATATGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTAC
*
63714053 TCAGGGAGAT-AGGCTAGGGAC
66 TCAGAGAGATAAGGCTAGGGAC
*
63714074 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAA
1 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAA
63714123 TCTGCTTTGC
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
86 56 0.46
87 28 0.23
91 39 0.32
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (87 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTTCAACCTACTCCACTGCTAC
TCAGAGAGATAAGGCTAGGGAC
Found at i:63714101 original size:42 final size:42
Alignment explanation
Indices: 63713971--63714107 Score: 141
Period size: 42 Copynumber: 3.2 Consensus size: 42
63713961 GCTACTCAGA
*
63713971 GAGATAAGGCTTGGGACTTCGATATGCTCCACTACTGCTTAGG
1 GAGATAAGGC-TGGGACTTCGATCTGCTCCACTACTGCTTAGG
* ** * * * * * *
63714014 GAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGG
1 GAGATAAG-GCTGGGA-CTTCGATCTGCTCCACTACTGCTTAGG
63714058 GAGAT-AGGCTAGGGACTTCGATCTGCTCCACTACTGCTTAGG
1 GAGATAAGGCT-GGGACTTCGATCTGCTCCACTACTGCTTAGG
63714100 GAGATAAG
1 GAGATAAG
63714108 ATCTGCAATC
Statistics
Matches: 71, Mismatches: 19, Indels: 8
0.72 0.19 0.08
Matches are distributed among these distances:
42 28 0.39
43 17 0.24
44 26 0.37
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (42 bp):
GAGATAAGGCTGGGACTTCGATCTGCTCCACTACTGCTTAGG
Found at i:63715427 original size:7 final size:6
Alignment explanation
Indices: 63715417--63715446 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
63715407 CCTTTTTCTT
63715417 TTTTTGC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTT-C TTTTTC TTTTTC TTTTTC TTTTT
63715447 TTGAAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:63723488 original size:46 final size:48
Alignment explanation
Indices: 63723431--63723530 Score: 132
Period size: 49 Copynumber: 2.1 Consensus size: 48
63723421 CAATATAATG
* **
63723431 GTTTTGCCTTTTAAC-TT-AATGGGTAAACATTAATCAAAACAAAGTA
1 GTTTTGACTTTTAACTTTAAAAAGGTAAACATTAATCAAAACAAAGTA
* *
63723477 GTTTTGACTTTTAACTTTAGAAAAGGTAAACATTTATCAAAACGAAGTA
1 GTTTTGACTTTTAACTTTA-AAAAGGTAAACATTAATCAAAACAAAGTA
63723526 GTTTT
1 GTTTT
63723531 TCCTTTTTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
46 14 0.30
47 2 0.04
49 30 0.65
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (48 bp):
GTTTTGACTTTTAACTTTAAAAAGGTAAACATTAATCAAAACAAAGTA
Found at i:63725195 original size:42 final size:42
Alignment explanation
Indices: 63725143--63725273 Score: 217
Period size: 42 Copynumber: 3.1 Consensus size: 42
63725133 ACCGGCACTT
* *
63725143 AGCCTGCTAGATGTAAAGTCTGATATTGTTTCACCGGTATTA
1 AGCCTACTAGACGTAAAGTCTGATATTGTTTCACCGGTATTA
63725185 AGCCTACTAGACGTAAAGTCTGATATTGTTTCACCGGTATTA
1 AGCCTACTAGACGTAAAGTCTGATATTGTTTCACCGGTATTA
* * *
63725227 AGCCTACTAGACGTAAAGTCTGAAATTATTTCACCGGCATTA
1 AGCCTACTAGACGTAAAGTCTGATATTGTTTCACCGGTATTA
63725269 AGCCT
1 AGCCT
63725274 GATAGGCACT
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 84 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (42 bp):
AGCCTACTAGACGTAAAGTCTGATATTGTTTCACCGGTATTA
Found at i:63727646 original size:65 final size:65
Alignment explanation
Indices: 63727571--63727700 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
63727561 AAGTTGTAAG
63727571 TAAGTTTCTTATTGAGGATTAACTATGATAAGTTATAGAGAACCCACAGGTATGTCGCAGGCCTT
1 TAAGTTTCTTATTGAGGATTAACTATGATAAGTTATAGAGAACCCACAGGTATGTCGCAGGCCTT
63727636 TAAGTTTCTTATTGAGGATTAACTATGATAAGTTATAGAGAACCCACAGGTATGTCGCAGGCCTT
1 TAAGTTTCTTATTGAGGATTAACTATGATAAGTTATAGAGAACCCACAGGTATGTCGCAGGCCTT
63727701 GGGAAAATAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (65 bp):
TAAGTTTCTTATTGAGGATTAACTATGATAAGTTATAGAGAACCCACAGGTATGTCGCAGGCCTT
Found at i:63731092 original size:21 final size:21
Alignment explanation
Indices: 63731046--63731092 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
63731036 AATTTTAAAG
*
63731046 GTTTAGATAAAAAAATATTAA
1 GTTTAGATAAAAAAATAATAA
*
63731067 ATTTAGATAATAAAAA-AATAA
1 GTTTAGATAA-AAAAATAATAA
63731088 GTTTA
1 GTTTA
63731093 TTTAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (21 bp):
GTTTAGATAAAAAAATAATAA
Found at i:63735336 original size:6 final size:6
Alignment explanation
Indices: 63735317--63735367 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
63735307 ATTAATTATT
* * *
63735317 TTAATA TTATTA TTACTA TT-ATA TTACATCA TTAATA TTAATA TTATTA
1 TTAATA TTAATA TTAATA TTAATA TTA-AT-A TTAATA TTAATA TTAATA
63735366 TT
1 TT
63735368 TACTTATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
5 4 0.11
6 26 0.68
7 4 0.11
8 4 0.11
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (6 bp):
TTAATA
Found at i:63735455 original size:23 final size:23
Alignment explanation
Indices: 63735407--63735460 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
63735397 TTTATTATTC
63735407 ATATATATAGGCATATATTTTATA
1 ATATATATA-GCATATATTTTATA
* *
63735431 ATATATATA-CATTATTTTTTTTA
1 ATATATATAGCA-TATATTTTATA
63735454 ATATATA
1 ATATATA
63735461 CGTATTGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 2 0.07
23 16 0.59
24 9 0.33
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.52
Consensus pattern (23 bp):
ATATATATAGCATATATTTTATA
Found at i:63741337 original size:19 final size:19
Alignment explanation
Indices: 63741307--63741362 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
63741297 TTTAAATTTT
63741307 TATTAAATATAATAATATA
1 TATTAAATATAATAATATA
*
63741326 T-TTAATATATAATTATATA
1 TATTAA-ATATAATAATATA
*
63741345 TATTAAAAATAATAATAT
1 TATTAAATATAATAATAT
63741363 TGAACTTTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 4 0.12
19 24 0.75
20 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
TATTAAATATAATAATATA
Found at i:63748254 original size:20 final size:19
Alignment explanation
Indices: 63748212--63748256 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
63748202 GTTGTAATGT
*
63748212 AATTTAATATTTACAATAT
1 AATTTAATATTTACAATAA
63748231 AATTTATATATTTA-AATTAA
1 AATTTA-ATATTTACAA-TAA
63748251 AATTTA
1 AATTTA
63748257 GAAATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTTAATATTTACAATAA
Found at i:63752831 original size:18 final size:19
Alignment explanation
Indices: 63752804--63752839 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
63752794 TATTTGTATA
63752804 TTAAATAGATATTTATTAT
1 TTAAATAGATATTTATTAT
63752823 TTAAA-AGATATTTATTA
1 TTAAATAGATATTTATTA
63752840 GATAAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (19 bp):
TTAAATAGATATTTATTAT
Found at i:63752845 original size:18 final size:19
Alignment explanation
Indices: 63752805--63752847 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
63752795 ATTTGTATAT
**
63752805 TAAATAGATATTTATTATT
1 TAAATAGATATTTATTAGA
63752824 TAAA-AGATATTTATTAGA
1 TAAATAGATATTTATTAGA
63752842 TAAATA
1 TAAATA
63752848 ATTAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (19 bp):
TAAATAGATATTTATTAGA
Found at i:63755925 original size:26 final size:26
Alignment explanation
Indices: 63755896--63755949 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
63755886 TTAATCTTGA
* * *
63755896 TTTTTTAAATAATTAATTCTAATATT
1 TTTTTTAAAGAATCAATTATAATATT
*
63755922 TTTTTTAAAGAATCCATTATAATATT
1 TTTTTTAAAGAATCAATTATAATATT
63755948 TT
1 TT
63755950 AAACAACTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.56
Consensus pattern (26 bp):
TTTTTTAAAGAATCAATTATAATATT
Found at i:63756840 original size:14 final size:14
Alignment explanation
Indices: 63756818--63756858 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
63756808 AATTTTGTTT
*
63756818 AATAGATAAAAATA
1 AATAAATAAAAATA
*
63756832 AATAAATAAATATA
1 AATAAATAAAAATA
63756846 AATTAAATAAAAA
1 AA-TAAATAAAAA
63756859 AAGTAAGGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (14 bp):
AATAAATAAAAATA
Found at i:63757347 original size:15 final size:16
Alignment explanation
Indices: 63757311--63757360 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
63757301 TTTTAATGTG
*
63757311 AAATTTATTTATTAAAA
1 AAATATATTTA-TAAAA
*
63757328 TAATA-ATTTATAAAA
1 AAATATATTTATAAAA
*
63757343 AAATATTTTTATAAAA
1 AAATATATTTATAAAA
63757359 AA
1 AA
63757361 CTCACAAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
15 9 0.32
16 16 0.57
17 3 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATATATTTATAAAA
Found at i:63757880 original size:21 final size:21
Alignment explanation
Indices: 63757850--63757898 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
63757840 ATTCCCTTAA
63757850 ATTA-TTTTATTTATAAAACT
1 ATTATTTTTATTTATAAAACT
*
63757870 ATTATTTTTATTTATAAAATT
1 ATTATTTTTATTTATAAAACT
63757891 ATTATTTT
1 ATTATTTT
63757899 AATAAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATTATTTTTATTTATAAAACT
Found at i:63757907 original size:21 final size:21
Alignment explanation
Indices: 63757862--63757908 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
63757852 TATTTTATTT
* **
63757862 ATAAAACTATTATTTTTATTT
1 ATAAAACTATTATTTTAATAA
*
63757883 ATAAAATTATTATTTTAATAA
1 ATAAAACTATTATTTTAATAA
63757904 ATAAA
1 ATAAA
63757909 TTTCATCATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAAAACTATTATTTTAATAA
Found at i:63764370 original size:30 final size:29
Alignment explanation
Indices: 63764336--63764392 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
63764326 GTGATTTTTG
* *
63764336 AAAATTAAATCAAATTAAAATTTCATGTAT
1 AAAATTAAATAAAATCAAAATTT-ATGTAT
*
63764366 AAAATTACATAAAATCAAAATTTATGT
1 AAAATTAAATAAAATCAAAATTTATGT
63764393 GTGATATTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (29 bp):
AAAATTAAATAAAATCAAAATTTATGTAT
Found at i:63768659 original size:27 final size:27
Alignment explanation
Indices: 63768619--63768670 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
63768609 ATCAAGGTGG
**
63768619 ACTACCTCACGTTTAGTGTCCCGTCGA
1 ACTACCTCACGTTTAACGTCCCGTCGA
**
63768646 ACTACCTCGTGTTTAACGTCCCGTC
1 ACTACCTCACGTTTAACGTCCCGTC
63768671 AGACTATCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.17, C:0.35, G:0.17, T:0.31
Consensus pattern (27 bp):
ACTACCTCACGTTTAACGTCCCGTCGA
Found at i:63768676 original size:27 final size:26
Alignment explanation
Indices: 63768618--63768676 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
63768608 TATCAAGGTG
**
63768618 GACTACCTCACGTTTAGTGTCCCGTC
1 GACTACCTCACGTTTAACGTCCCGTC
**
63768644 GAACTACCTCGTGTTTAACGTCCCGTC
1 G-ACTACCTCACGTTTAACGTCCCGTC
63768671 AGACTA
1 -GACTA
63768677 TCTTAGGATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.04
27 25 0.93
28 1 0.04
ACGTcount: A:0.20, C:0.32, G:0.19, T:0.29
Consensus pattern (26 bp):
GACTACCTCACGTTTAACGTCCCGTC
Found at i:63771206 original size:19 final size:21
Alignment explanation
Indices: 63771168--63771220 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
63771158 TGAACAAAAA
*
63771168 GGAAAGAAGAAAAAAGGAATC
1 GGAAAGAAGAAAAAACGAATC
*
63771189 -GAAAGAA-AAAAACCGAATC
1 GGAAAGAAGAAAAAACGAATC
63771208 GGAAAGAAGAAAA
1 GGAAAGAAGAAAA
63771221 GAAAAACCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 10 0.36
20 14 0.50
21 4 0.14
ACGTcount: A:0.64, C:0.08, G:0.25, T:0.04
Consensus pattern (21 bp):
GGAAAGAAGAAAAAACGAATC
Found at i:63772496 original size:15 final size:16
Alignment explanation
Indices: 63772476--63772506 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
63772466 TTAAAGCAGA
63772476 AAAAAATTA-AAAAAT
1 AAAAAATTATAAAAAT
63772491 AAAAAATTATAAAAAT
1 AAAAAATTATAAAAAT
63772507 TGATTCAACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAAATTATAAAAAT
Found at i:63772675 original size:17 final size:18
Alignment explanation
Indices: 63772650--63772688 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
63772640 TAACATTGAA
*
63772650 TTTTGAAAT-TTTTATAT
1 TTTTAAAATATTTTATAT
*
63772667 TTTTAAAATATTTTTTAT
1 TTTTAAAATATTTTATAT
63772685 TTTT
1 TTTT
63772689 GAATTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTAAAATATTTTATAT
Found at i:63772694 original size:26 final size:25
Alignment explanation
Indices: 63772657--63772707 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
63772647 GAATTTTGAA
63772657 ATTTTTATATTTTTAAA-ATATTTTTT
1 ATTTTTATA-TTTTAAAGAT-TTTTTT
63772683 ATTTTTGA-ATTTTAAAGATTTTTTT
1 ATTTTT-ATATTTTAAAGATTTTTTT
63772708 CCCATATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
25 13 0.57
26 9 0.39
27 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (25 bp):
ATTTTTATATTTTAAAGATTTTTTT
Found at i:63772937 original size:16 final size:17
Alignment explanation
Indices: 63772916--63772953 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
63772906 AATTAAATCG
* *
63772916 ATTTTTATAAAT-TTTT
1 ATTTTTAAAAATAATTT
63772932 ATTTTTAAAAATAATTT
1 ATTTTTAAAAATAATTT
63772949 ATTTT
1 ATTTT
63772954 ATTTGAACCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTTTAAAAATAATTT
Found at i:63773253 original size:20 final size:22
Alignment explanation
Indices: 63773230--63773280 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
63773220 AAATTTTAAA
63773230 TTTATTTTTTAAAAATA-AT-T
1 TTTATTTTTTAAAAATATATAT
* *
63773250 TTTATTTTTTTAAAATATTTAT
1 TTTATTTTTTAAAAATATATAT
63773272 TTTATTTTT
1 TTTATTTTT
63773281 ATGGTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 16 0.59
21 1 0.04
22 10 0.37
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTATTTTTTAAAAATATATAT
Found at i:63773517 original size:20 final size:20
Alignment explanation
Indices: 63773475--63773520 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
63773465 TTAAAGTCTC
*
63773475 AAAATTAAAATTAAAATGCA
1 AAAATTAAAATTAAAATGAA
*
63773495 AAAATTAAAATTAAAAATAAA
1 AAAATTAAAATT-AAAATGAA
63773516 AAAAT
1 AAAAT
63773521 ACGTTTACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (20 bp):
AAAATTAAAATTAAAATGAA
Found at i:63778824 original size:23 final size:22
Alignment explanation
Indices: 63778767--63778827 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 22
63778757 TTAATTTTTT
* * *
63778767 ATATAAAAATAAATTTAGAAAT
1 ATATTAAAATAAATATAGAAAA
* * *
63778789 ATAATAAATTAAATATATTAAAA
1 ATATTAAAATAAATATA-GAAAA
63778812 ATATTAAAATAAATAT
1 ATATTAAAATAAATAT
63778828 TTACATTAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
22 13 0.43
23 17 0.57
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
ATATTAAAATAAATATAGAAAA
Found at i:63778855 original size:18 final size:18
Alignment explanation
Indices: 63778814--63778847 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
63778804 TATTAAAAAT
63778814 ATTAAAATAAATATTTAC
1 ATTAAAATAAATATTTAC
*
63778832 ATTAAAA-AAGTATTTA
1 ATTAAAATAAATATTTA
63778848 TACTTAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (18 bp):
ATTAAAATAAATATTTAC
Found at i:63778947 original size:11 final size:11
Alignment explanation
Indices: 63778942--63778980 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
63778932 TATAATATCC
63778942 AAATAATAACA
1 AAATAATAACA
**
63778953 AAATAATAGTA
1 AAATAATAACA
*
63778964 ATATAATAACA
1 AAATAATAACA
63778975 AAATAA
1 AAATAA
63778981 CAGCAAAAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (11 bp):
AAATAATAACA
Found at i:63778956 original size:33 final size:33
Alignment explanation
Indices: 63778907--63778980 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
63778897 CAATAGTAGA
* * *
63778907 CAAATTAATAATAAAATAAGAGTTATATAATATC
1 CAAA-TAATAACAAAATAAGAGTAATATAATAAC
*
63778941 CAAATAATAACAAAATAATAGTAATATAATAAC
1 CAAATAATAACAAAATAAGAGTAATATAATAAC
*
63778974 AAAATAA
1 CAAATAA
63778981 CAGCAAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
33 31 0.89
34 4 0.11
ACGTcount: A:0.62, C:0.07, G:0.04, T:0.27
Consensus pattern (33 bp):
CAAATAATAACAAAATAAGAGTAATATAATAAC
Found at i:63778988 original size:33 final size:33
Alignment explanation
Indices: 63778919--63778988 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
63778909 AATTAATAAT
* * * *
63778919 AAAATAAGAGTTATATAATATCCAAATAATAAC
1 AAAATAAGAGTAATATAATAACAAAATAACAAC
* *
63778952 AAAATAATAGTAATATAATAACAAAATAACAGC
1 AAAATAAGAGTAATATAATAACAAAATAACAAC
63778985 AAAA
1 AAAA
63778989 AAATTATGCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.63, C:0.09, G:0.06, T:0.23
Consensus pattern (33 bp):
AAAATAAGAGTAATATAATAACAAAATAACAAC
Found at i:63780196 original size:25 final size:25
Alignment explanation
Indices: 63780127--63780198 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 25
63780117 TCACACCAAC
*
63780127 TTTATCCTAGTAAACTTTTGACAAT
1 TTTATCCTAGTAAAATTTTGACAAT
* * **
63780152 TTTATTCTTTGTAAAATTTTGATGAT
1 TTTA-TCCTAGTAAAATTTTGACAAT
63780178 TTTATCCTAGTAAAATTTTGA
1 TTTATCCTAGTAAAATTTTGA
63780199 GAAAATTCGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 19 0.49
26 20 0.51
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.50
Consensus pattern (25 bp):
TTTATCCTAGTAAAATTTTGACAAT
Found at i:63781898 original size:28 final size:27
Alignment explanation
Indices: 63781831--63781906 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 27
63781821 GGGGATTGGC
* *
63781831 ATTTTATCGCATTATATGATACTGACA
1 ATTTTATCGCATTATATGTTATTGACA
63781858 ATTTTATCGCATTATATGTTATTCGACA
1 ATTTTATCGCATTATATGTTATT-GACA
*
63781886 GATTTTCT-GCATT-TATGTTAT
1 -ATTTTATCGCATTATATGTTAT
63781907 ACGGTGGTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 29 0.66
28 9 0.20
29 6 0.14
ACGTcount: A:0.28, C:0.13, G:0.12, T:0.47
Consensus pattern (27 bp):
ATTTTATCGCATTATATGTTATTGACA
Found at i:63788303 original size:20 final size:20
Alignment explanation
Indices: 63788247--63788294 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
63788237 ATGATAGGGA
63788247 TTGTGCCATCAGTTAATACG
1 TTGTGCCATCAGTTAATACG
*
63788267 TTGTGCCATCAGATAATACG
1 TTGTGCCATCAGTTAATACG
63788287 TTGTGCCA
1 TTGTGCCA
63788295 CTCTTTAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (20 bp):
TTGTGCCATCAGTTAATACG
Found at i:63795749 original size:25 final size:23
Alignment explanation
Indices: 63795704--63795750 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
63795694 CTTTTCTTTA
**
63795704 GTTTTTTTTATTTCTTTTTAGAT
1 GTTTTTTTTATTTCTAGTTAGAT
63795727 GTTTATTTTTATTTCCTAGTTAGA
1 GTTT-TTTTTATTT-CTAGTTAGA
63795751 ATTCTTGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 4 0.20
24 9 0.45
25 7 0.35
ACGTcount: A:0.17, C:0.06, G:0.11, T:0.66
Consensus pattern (23 bp):
GTTTTTTTTATTTCTAGTTAGAT
Found at i:63809212 original size:31 final size:31
Alignment explanation
Indices: 63809174--63809237 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
63809164 CAAACTTAAG
*
63809174 GAATGCGTTGACAGTAAGATTTCAATGCGTC
1 GAATGCGTTGACAGTAAGATTTCAATGCATC
63809205 GAATGCGTTGACAGTAAGATTTCAATGCATC
1 GAATGCGTTGACAGTAAGATTTCAATGCATC
63809236 GA
1 GA
63809238 CAAAGGTACC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (31 bp):
GAATGCGTTGACAGTAAGATTTCAATGCATC
Found at i:63811874 original size:22 final size:22
Alignment explanation
Indices: 63811849--63811900 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
63811839 GTGGAATAGT
*
63811849 TTCAATGTTGATTTGCAGTTGC
1 TTCAATGTTGATCTGCAGTTGC
* *
63811871 TTCAGTGTTTATCTGCAGTTGC
1 TTCAATGTTGATCTGCAGTTGC
*
63811893 TTTAATGT
1 TTCAATGT
63811901 GTCCAGGAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.17, C:0.13, G:0.21, T:0.48
Consensus pattern (22 bp):
TTCAATGTTGATCTGCAGTTGC
Found at i:63814075 original size:46 final size:47
Alignment explanation
Indices: 63814008--63814109 Score: 152
Period size: 47 Copynumber: 2.2 Consensus size: 47
63813998 TTAATGTTGG
* * *
63814008 TGCAATAACTAGATATAAATAATA-AAATTGTGAGGATAGTTATCGA
1 TGCAATAACCAGATATAAATAAGATAAATTGTGAGGATAGTTATCAA
* *
63814054 TGCAATAACCAGATATAAATAAGATAAATTGTGAGGATGGTTGTCAA
1 TGCAATAACCAGATATAAATAAGATAAATTGTGAGGATAGTTATCAA
63814101 TGCAATAAC
1 TGCAATAAC
63814110 TTGAAAACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 22 0.44
47 28 0.56
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (47 bp):
TGCAATAACCAGATATAAATAAGATAAATTGTGAGGATAGTTATCAA
Found at i:63814122 original size:47 final size:47
Alignment explanation
Indices: 63814008--63814128 Score: 129
Period size: 47 Copynumber: 2.6 Consensus size: 47
63813998 TTAATGTTGG
* * * *
63814008 TGCAATAACTAGATATAAATAATA-AAATTGTGAGGATAGTTATCGA
1 TGCAATAACCAGATAAAAATAAAATAAATTGTGAGGATAGTTATCAA
* * * *
63814054 TGCAATAACCAGATATAAATAAGATAAATTGTGAGGATGGTTGTCAA
1 TGCAATAACCAGATAAAAATAAAATAAATTGTGAGGATAGTTATCAA
**
63814101 TGCAATAACTTGA-AAACAATAAAATAAA
1 TGCAATAACCAGATAAA-AATAAAATAAA
63814129 ATATGATAGT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 24 0.38
47 40 0.62
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27
Consensus pattern (47 bp):
TGCAATAACCAGATAAAAATAAAATAAATTGTGAGGATAGTTATCAA
Found at i:63815623 original size:56 final size:51
Alignment explanation
Indices: 63815545--63815737 Score: 237
Period size: 50 Copynumber: 3.7 Consensus size: 51
63815535 GGGAATGAGA
*
63815545 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G-TATGAGAGG
*
63815601 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG-ATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGTATGAGAGG
** * **
63815651 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-TATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGTATGAGAGG
* * *
63815701 TCCCATGTAAGACCATATCTGGGATATGACATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
63815738 ATACAGAAAA
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
50 82 0.67
52 1 0.01
53 2 0.02
55 1 0.01
56 36 0.30
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (51 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGTATGAGAGG
Found at i:63816002 original size:12 final size:12
Alignment explanation
Indices: 63815985--63816023 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
63815975 ATCAGTTATT
63815985 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
63815997 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
63816009 TAAGTGAGTAAG
1 TAAGTAAGCAAG
63816021 TAA
1 TAA
63816024 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:63828161 original size:58 final size:58
Alignment explanation
Indices: 63828071--63828186 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
63828061 GGACCCCGGT
*
63828071 GAAGAAAGAACCCTAGCGGATGACGTTGAGAGCGTAGCGGCTACTCCTGCACAAGGGA
1 GAAGAAAGAACCCTAGCGGATGACGATGAGAGCGTAGCGGCTACTCCTGCACAAGGGA
*
63828129 GAAGAAAGAACCCTAGCGGATGACGATGAGAGCGTAGCGGCTGCTCCTGCACAAGGGA
1 GAAGAAAGAACCCTAGCGGATGACGATGAGAGCGTAGCGGCTACTCCTGCACAAGGGA
63828187 CGCCGCCTGT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.31, C:0.22, G:0.34, T:0.13
Consensus pattern (58 bp):
GAAGAAAGAACCCTAGCGGATGACGATGAGAGCGTAGCGGCTACTCCTGCACAAGGGA
Found at i:63829668 original size:65 final size:65
Alignment explanation
Indices: 63829564--63829694 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 65
63829554 GGTCAATGCG
63829564 TACTTGTTGATAAAGTGTGTAAGAGATGCCCTCTAATAATCCGAGAATCCTATTTTCCGGCTGAT
1 TACTTGTTGATAAAGTGTGTAAGAGATGCCCTCTAATAATCCGAGAATCCTATTTTCCGGCTGAT
*
63829629 TACTTGTTGATAAAGTGTGTAAGAGATGCCCTCTAATAATCCGAGAATCCTGTTTTCCGGCTGAT
1 TACTTGTTGATAAAGTGTGTAAGAGATGCCCTCTAATAATCCGAGAATCCTATTTTCCGGCTGAT
63829694 T
1 T
63829695 TGATGCTTTT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (65 bp):
TACTTGTTGATAAAGTGTGTAAGAGATGCCCTCTAATAATCCGAGAATCCTATTTTCCGGCTGAT
Found at i:63830170 original size:59 final size:59
Alignment explanation
Indices: 63830075--63830193 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
63830065 AATTTCGATC
* *
63830075 GCTCCGTATCGTATGGCACTAACCGAGTTAAGAGAGTTGAAAGCTCAGTTGCAAGAATT
1 GCTCCGTATCGTATGGCACTAACCGAGTTAAAAGAGTTGAAAACTCAGTTGCAAGAATT
63830134 GCTCCGTATCGTATGGCACTAACCGAGTTAAAAGAGTTGAAAACTCAGTTGCAAGAATT
1 GCTCCGTATCGTATGGCACTAACCGAGTTAAAAGAGTTGAAAACTCAGTTGCAAGAATT
63830193 G
1 G
63830194 ACGGATAGAG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (59 bp):
GCTCCGTATCGTATGGCACTAACCGAGTTAAAAGAGTTGAAAACTCAGTTGCAAGAATT
Found at i:63836655 original size:47 final size:46
Alignment explanation
Indices: 63836597--63836686 Score: 126
Period size: 47 Copynumber: 1.9 Consensus size: 46
63836587 AAAAAGGTGG
* * * *
63836597 GACCAAGGTGAAAGCTTACAAAGGGCGCTTTGAGTCAAAAAAAAAGA
1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGT-AAAAAAAAAGA
*
63836644 GACCAGGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAA
1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAA
63836687 TGGAGAGGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
46 8 0.21
47 30 0.79
ACGTcount: A:0.44, C:0.17, G:0.26, T:0.13
Consensus pattern (46 bp):
GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAAGA
Found at i:63838078 original size:92 final size:90
Alignment explanation
Indices: 63837976--63838209 Score: 238
Period size: 92 Copynumber: 2.6 Consensus size: 90
63837966 GTTGAAAAGC
* * * * * *
63837976 AGCAGGTCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAATAT-ACAGATCTCGCCTTCCCAT
1 AGCAGATCTTGTCTTCATATACTGG-AGCGAAGTAGATCAAAGATAACAGATCTCGCCTTCCCAT
*
63838040 ACTGGTGGCGAAGCAGATCGAAGGAAAA
65 ACTAGTGGCGAAGCAGATCGAA-G-AAA
* * * * * *
63838068 AGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATTAAAGATAACAGATCTTGTCTTCCCATA
1 AGCAGATCTTGTCTTCATATACTGGAGCGAAGTAGATCAAAGATAACAGATCTCGCCTTCCCATA
*
63838133 CTAGTGGCGAAGTAGATCGAAGAAA
66 CTAGTGGCGAAGCAGATCGAAGAAA
* * * ** * *
63838158 A-TAGATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAATATAGCAGATCT
1 AGCAGATCTTGTCTTCATATACTGGAGCGAAGTAGATCAAAGATAACAGATCT
63838210 TTCCTTCCTA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
89 46 0.38
90 4 0.03
91 14 0.11
92 58 0.48
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (90 bp):
AGCAGATCTTGTCTTCATATACTGGAGCGAAGTAGATCAAAGATAACAGATCTCGCCTTCCCATA
CTAGTGGCGAAGCAGATCGAAGAAA
Found at i:63838124 original size:44 final size:44
Alignment explanation
Indices: 63838070--63838210 Score: 160
Period size: 44 Copynumber: 3.2 Consensus size: 44
63838060 AAGGAAAAAG
*
63838070 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATTAAAGATAA
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA
* * * *
63838114 CAGATCTTGTCTTCCCATACTAGTGGC--GAAGTAGATCGAAGAAAA
1 CAGATCTTGTCTT--CAT-GTACTGGCGTGAAGTAGATCAAAGATAA
* * * *
63838159 TAGATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAATATAG
1 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA
63838203 CAGATCTT
1 CAGATCTT
63838211 TCCTTCCTAC
Statistics
Matches: 78, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 6 0.08
43 3 0.04
44 33 0.42
45 27 0.35
46 3 0.04
47 6 0.08
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (44 bp):
CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA
Found at i:63838164 original size:45 final size:45
Alignment explanation
Indices: 63837982--63838172 Score: 156
Period size: 44 Copynumber: 4.2 Consensus size: 45
63837972 AAGCAGCAGG
* * * * * * *
63837982 TCTTGTCTTCCTATATTGGTAGCGAAGTGGATCGAA-TATACAGA
1 TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAACAGA
* * * *
63838026 TCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGA
1 TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAA-G-AAAA-CAGA
* * ** *
63838074 TCTTGTCTT--CAT-GTACTGGCGTGAAGTAGATTAAAGATAACAGA
1 TCTTGTCTTCCCATACTAGTGGC--GAAGTAGATCGAAGAAAACAGA
*
63838118 TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAATAGA
1 TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAACAGA
63838163 TCTTGTCTTC
1 TCTTGTCTTC
63838173 ATGTACTGGC
Statistics
Matches: 114, Mismatches: 24, Indels: 17
0.74 0.15 0.11
Matches are distributed among these distances:
44 42 0.37
45 36 0.32
46 7 0.06
47 18 0.16
48 11 0.10
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (45 bp):
TCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAACAGA
Found at i:63838430 original size:45 final size:43
Alignment explanation
Indices: 63838366--63838825 Score: 347
Period size: 45 Copynumber: 10.3 Consensus size: 43
63838356 TGGCGTGAAG
*
63838366 TAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGTGGAA
1 TAGATCAAAGAAAC-AGATCTTGTCTTCCCATACTGG-GGTGGAA
*** * *
63838411 TAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT-GAA
1 TAGATCAAAGAAA-CAGATCTTGTCTTCCCATACTGGGGTGGAA
* *
63838454 GTAGAACAAAAGTCAACAGATCTTGTCTTCCCATACTGGGGGTGGAA
1 -TAGATC-AAAG-AAACAGATCTTGTCTTCCCATACT-GGGGTGGAA
*** * *
63838501 TAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT-GAA
1 TAGATCAAAGAAA-CAGATCTTGTCTTCCCATACTGGGGTGGAA
* *
63838544 GTAGAACAAAAGTCAACAGATCTTGTCTTCCCATACTGGGGGTGGAA
1 -TAGATC-AAAG-AAACAGATCTTGTCTTCCCATACT-GGGGTGGAA
*** * *
63838591 TAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT-GAA
1 TAGATCAAAGAAA-CAGATCTTGTCTTCCCATACTGGGGTGGAA
* *
63838634 GTAGAACAAAAGTCAACAGATCTTGTCTTCCCATACTGGGGGTGGAA
1 -TAGATC-AAAG-AAACAGATCTTGTCTTCCCATACT-GGGGTGGAA
*** * *
63838681 TAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT-GAA
1 TAGATCAAAGAAA-CAGATCTTGTCTTCCCATACTGGGGTGGAA
* *
63838724 GTAGATCAAAAGTCAACAGATCTTGTCTTCCCATACTGGTGGTGGAG
1 -TAGATC-AAAG-AAACAGATCTTGTCTTCCCATACTGG-GGTGGAA
* * * * *
63838771 TAGATCGAAGAAA-ATGGATCTTGTCTTCACGTATTGGCGT-GAA
1 TAGATCAAAGAAACA--GATCTTGTCTTCCCATACTGGGGTGGAA
63838814 GTAGATCAAAGA
1 -TAGATCAAAGA
63838826 GGAAAGCTGA
Statistics
Matches: 325, Mismatches: 63, Indels: 55
0.73 0.14 0.12
Matches are distributed among these distances:
43 15 0.05
44 55 0.17
45 200 0.62
46 44 0.14
47 11 0.03
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (43 bp):
TAGATCAAAGAAACAGATCTTGTCTTCCCATACTGGGGTGGAA
Found at i:63838505 original size:90 final size:90
Alignment explanation
Indices: 63838336--63838823 Score: 838
Period size: 90 Copynumber: 5.4 Consensus size: 90
63838326 TTGTAGATTT
*
63838336 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC-AAAG--ATACTAGATCTTGTCTTCCCAT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCA-AC-AGATCTTGTCTTCCCAT
*
63838398 ACTGGTGGTGGAATAGATCAAAGAAAG
64 ACTGGGGGTGGAATAGATCAAAGAAAG
63838425 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCAACAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCAACAGATCTTGTCTTCCCATAC
63838490 TGGGGGTGGAATAGATCAAAGAAAG
66 TGGGGGTGGAATAGATCAAAGAAAG
63838515 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCAACAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCAACAGATCTTGTCTTCCCATAC
63838580 TGGGGGTGGAATAGATCAAAGAAAG
66 TGGGGGTGGAATAGATCAAAGAAAG
63838605 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCAACAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCAACAGATCTTGTCTTCCCATAC
63838670 TGGGGGTGGAATAGATCAAAGAAAG
66 TGGGGGTGGAATAGATCAAAGAAAG
*
63838695 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAAGTCAACAGATCTTGTCTTCCCATAC
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCAACAGATCTTGTCTTCCCATAC
* * * *
63838760 TGGTGGTGGAGTAGATCGAAGAAAA
66 TGGGGGTGGAATAGATCAAAGAAAG
** * *
63838785 TGGATCTTGTCTTCACGTATTGGCGTGAAGTAGATCAAA
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAA
63838824 GAGGAAAGCT
Statistics
Matches: 386, Mismatches: 10, Indels: 5
0.96 0.02 0.01
Matches are distributed among these distances:
89 35 0.09
90 348 0.90
91 2 0.01
92 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (90 bp):
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGAACAAAAGTCAACAGATCTTGTCTTCCCATAC
TGGGGGTGGAATAGATCAAAGAAAG
Found at i:63839678 original size:3 final size:3
Alignment explanation
Indices: 63839665--63839729 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
63839655 TTACTATTTA
*
63839665 ATT ATTT ATT ATT A-T ATT A-T ATT ATT ACTT GTT CATT ATT ATT ATTT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT A-TT ATT -ATT ATT ATT A-TT
* *
63839712 GTT ATT ATT ATT AAT ATT
1 ATT ATT ATT ATT ATT ATT
63839730 GTAATTTTTA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
2 4 0.08
3 37 0.74
4 9 0.18
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:63839704 original size:17 final size:16
Alignment explanation
Indices: 63839684--63839724 Score: 64
Period size: 17 Copynumber: 2.5 Consensus size: 16
63839674 TATTATATTA
63839684 TATTATTACTTGTTCAT
1 TATTATTACTTGTT-AT
*
63839701 TATTATTATTTGTTAT
1 TATTATTACTTGTTAT
63839717 TATTATTA
1 TATTATTA
63839725 ATATTGTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (16 bp):
TATTATTACTTGTTAT
Found at i:63839721 original size:19 final size:18
Alignment explanation
Indices: 63839665--63839729 Score: 55
Period size: 17 Copynumber: 3.7 Consensus size: 18
63839655 TTACTATTTA
*
63839665 ATTATTTATTA-TTATATT
1 ATTA-TTATTATTTGTATT
* *
63839683 A-TATTATTACTTGT-TC
1 ATTATTATTATTTGTATT
63839699 ATTATTATTATTTGTTATT
1 ATTATTATTATTTG-TATT
*
63839718 ATTATTAATATT
1 ATTATTATTATT
63839730 GTAATTTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
16 8 0.21
17 16 0.42
18 2 0.05
19 12 0.32
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (18 bp):
ATTATTATTATTTGTATT
Found at i:63844322 original size:32 final size:32
Alignment explanation
Indices: 63844281--63844342 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
63844271 TTTGTGTACA
*
63844281 TAATTAAATAATTTTATTTTTAATTTTTTAGT
1 TAATTAAATAATTTTATTTTAAATTTTTTAGT
*
63844313 TAATTAAATATTTTTATTTTAAATTTTTTA
1 TAATTAAATAATTTTATTTTAAATTTTTTA
63844343 TTTACCTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (32 bp):
TAATTAAATAATTTTATTTTAAATTTTTTAGT
Found at i:63844346 original size:13 final size:15
Alignment explanation
Indices: 63844284--63844345 Score: 65
Period size: 14 Copynumber: 4.1 Consensus size: 15
63844274 GTGTACATAA
*
63844284 TTAAATAATTTTATT
1 TTAAATATTTTTATT
*
63844299 TTTAAT-TTTTTAGTT
1 TTAAATATTTTTA-TT
63844314 AATTAAATATTTTTATT
1 --TTAAATATTTTTATT
63844331 TTAAAT-TTTTTATT
1 TTAAATATTTTTATT
63844345 T
1 T
63844346 ACCTTGTTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
14 14 0.35
15 13 0.32
17 7 0.17
18 6 0.15
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (15 bp):
TTAAATATTTTTATT
Found at i:63845471 original size:17 final size:16
Alignment explanation
Indices: 63845421--63845471 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
63845411 CAAAAAAAAC
63845421 TTTTTATTTAAA-ATT
1 TTTTTATTTAAATATT
* * *
63845436 CTTTTAATTTTAATTTT
1 -TTTTTATTTAAATATT
63845453 TTTTTCATTTAAATATT
1 TTTTT-ATTTAAATATT
63845470 TT
1 TT
63845472 AATTATAGAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
16 14 0.52
17 13 0.48
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTATTTAAATATT
Found at i:63849474 original size:20 final size:19
Alignment explanation
Indices: 63849451--63849522 Score: 58
Period size: 19 Copynumber: 3.6 Consensus size: 19
63849441 TATTCAACCT
63849451 AATATACAGTTATAA-AATTA
1 AATATA-AGTT-TAATAATTA
63849471 AATATAAGTTTAATAATTA
1 AATATAAGTTTAATAATTA
* *
63849490 TGCAATA-AATTTTAAAAAATTA
1 ---AATATAAGTTT-AATAATTA
63849512 AATATAAGTTT
1 AATATAAGTTT
63849523 GATTGAAATG
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
18 3 0.07
19 13 0.30
20 11 0.26
21 5 0.12
22 11 0.26
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.39
Consensus pattern (19 bp):
AATATAAGTTTAATAATTA
Found at i:63876279 original size:27 final size:28
Alignment explanation
Indices: 63876224--63876313 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
63876214 TAAATTTATC
* *
63876224 TCTAGTTTTAGGGATTTCTTGATG-TTTT
1 TCTA-TTTTATGGATTTCTTGAAGCTTTT
*
63876252 TCTTATTTT-TGGATTTCTTGAAACTTTT
1 TC-TATTTTATGGATTTCTTGAAGCTTTT
** *
63876280 TCTATTTTATGTTTTTCTTGAAGCTTTC
1 TCTATTTTATGGATTTCTTGAAGCTTTT
63876308 TCTATT
1 TCTATT
63876314 GTTTAGGTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 17 0.33
28 33 0.63
29 2 0.04
ACGTcount: A:0.16, C:0.11, G:0.13, T:0.60
Consensus pattern (28 bp):
TCTATTTTATGGATTTCTTGAAGCTTTT
Found at i:63897767 original size:32 final size:33
Alignment explanation
Indices: 63897731--63897794 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
63897721 TTAATTTAAG
63897731 ATTTTATTAAAAAG-ATTAAA-TAGAATTTTTTT
1 ATTTT-TTAAAAAGAATTAAAGTAGAATTTTTTT
* *
63897763 ATTTTTTAAAGAGAATTAAAGTATAATTTTTT
1 ATTTTTTAAAAAGAATTAAAGTAGAATTTTTT
63897795 AACATATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 7 0.25
32 11 0.39
33 10 0.36
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (33 bp):
ATTTTTTAAAAAGAATTAAAGTAGAATTTTTTT
Found at i:63898264 original size:26 final size:25
Alignment explanation
Indices: 63898212--63898279 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
63898202 TGTTTTCTAA
**
63898212 TTTTAAAAATAAAAAGTGAAAGCTATT
1 TTTTAAAAATAAAAA-TGAAAAATA-T
63898239 TTTTAAAAATAAAAAT-ATAAAATAT
1 TTTTAAAAATAAAAATGA-AAAATAT
* *
63898264 TTTCAAAAATCAAAAT
1 TTTTAAAAATAAAAAT
63898280 TTATAGCAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 16 0.44
26 5 0.14
27 15 0.42
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.34
Consensus pattern (25 bp):
TTTTAAAAATAAAAATGAAAAATAT
Found at i:63906450 original size:42 final size:42
Alignment explanation
Indices: 63906368--63906608 Score: 229
Period size: 42 Copynumber: 5.7 Consensus size: 42
63906358 TAACATTTAT
* **
63906368 AAACGCCGCTAAAGGTCATGTTC-TTAGCGGTACAACCATAA
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAA
* *
63906409 AAACGCCGCTAAAGGTCAAGTTCATTAGCGGTGCTTCCATAA
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAA
* ** * * * *
63906451 AAACGTCGCTAAAGAACATGATCTTTAGCGGCGCTTTCC-CAC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGC-TTCCATAA
* **
63906493 AAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTT-TTTACA
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATA-A
* **
63906535 CAAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGTTTTTCC-CGA
1 -AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTG--CTTCCATAA
* *
63906579 AAATGCCCCTAAAGGTCATGTTCTTTAGCG
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCG
63906609 TCATGTTCTT
Statistics
Matches: 163, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
41 25 0.15
42 71 0.44
43 64 0.39
44 1 0.01
45 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (42 bp):
AAACGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAA
Found at i:63906596 original size:86 final size:83
Alignment explanation
Indices: 63906408--63906608 Score: 242
Period size: 86 Copynumber: 2.4 Consensus size: 83
63906398 TACAACCATA
* * * *
63906408 AAAACGCCGCTAAAGGTCAAGTTCATTAGCGGTGCTTCCATAAAAACGTCGCTAAAGAACATGAT
1 AAAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAAAAACGCCGCTAAAGAACATGAT
63906473 CTTTAGCGGCGCTTTCCC
66 CTTTAGCGGCGCTTTCCC
** **
63906491 ACAAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTT-TTTACACAAACGCCGCTAAAGGTCAT
1 A-AAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATA-A-AAACGCCGCTAAAGAACAT
* * *
63906555 GTTCTTTAGCGGTGTTTTTCCC
63 GATCTTTAGCGGCG-CTTTCCC
*
63906577 GAAAATGCCCCTAAAGGTCATGTTCTTTAGCG
1 -AAAATGCCGCTAAAGGTCATGTTCTTTAGCG
63906609 TCATGTTCTT
Statistics
Matches: 101, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
83 3 0.03
84 34 0.34
85 28 0.28
86 35 0.35
87 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (83 bp):
AAAATGCCGCTAAAGGTCATGTTCTTTAGCGGTGCTTCCATAAAAACGCCGCTAAAGAACATGAT
CTTTAGCGGCGCTTTCCC
Found at i:63906613 original size:15 final size:15
Alignment explanation
Indices: 63906593--63906623 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
63906583 GCCCCTAAAG
63906593 GTCATGTTCTTTAGC
1 GTCATGTTCTTTAGC
63906608 GTCATGTTCTTTAGC
1 GTCATGTTCTTTAGC
63906623 G
1 G
63906624 GCGCTTTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (15 bp):
GTCATGTTCTTTAGC
Found at i:63906664 original size:58 final size:58
Alignment explanation
Indices: 63906550--63906666 Score: 139
Period size: 58 Copynumber: 2.0 Consensus size: 58
63906540 GCCGCTAAAG
* * * **
63906550 GTCATGTTCTTTAGCGGTGTTTTTCCCGAAAATGCCCCTAAAGGTCATGTTCTTTAGC
1 GTCATGTTCTTTAGCGGCGCTTTTCCCGAAAACGCCCCTAAAGGTCATACTCTTTAGC
* *
63906608 GTCATGTTCTTTAGCGGCGCTTTTCCC-ACAAACGCCGCTAAATGTCATAACT-TTTAGC
1 GTCATGTTCTTTAGCGGCGCTTTTCCCGA-AAACGCCCCTAAAGGTCAT-ACTCTTTAGC
63906666 G
1 G
63906667 GCACTTTTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
57 1 0.02
58 48 0.96
59 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (58 bp):
GTCATGTTCTTTAGCGGCGCTTTTCCCGAAAACGCCCCTAAAGGTCATACTCTTTAGC
Found at i:63907061 original size:21 final size:21
Alignment explanation
Indices: 63907037--63907086 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
63907027 TTCTGCTTTG
63907037 CTCTGCTTCCCTCACTGCCGC
1 CTCTGCTTCCCTCACTGCCGC
*
63907058 CTCTGCTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCACTGCCGC
63907079 CTCTGCTT
1 CTCTGCTT
63907087 TAAGTTGCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.02, C:0.50, G:0.16, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCACTGCCGC
Done.