Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 21 of 313
Found at i:7105053 original size:28 final size:28
Alignment explanation
Indices: 7105010--7105108 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
7105000 AAACATGTTA
** *
7105010 GAAAAGGAATTTCTTCGTTGCAATATAT
1 GAAAAGGAATGCCTTCGTAGCAATATAT
* * * *
7105038 GAAAAGGAATGGCTTCGTGGAAATATGT
1 GAAAAGGAATGCCTTCGTAGCAATATAT
* * *
7105066 GAAAAGGAATACCTTTGTACCAATATAT
1 GAAAAGGAATGCCTTCGTAGCAATATAT
*
7105094 GAAAAGAAATGCCTT
1 GAAAAGGAATGCCTT
7105109 TGTGGTAGAC
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.28
Consensus pattern (28 bp):
GAAAAGGAATGCCTTCGTAGCAATATAT
Found at i:7108089 original size:18 final size:19
Alignment explanation
Indices: 7108066--7108120 Score: 71
Period size: 18 Copynumber: 3.1 Consensus size: 19
7108056 CTTGGCCCAT
7108066 TGCAGTAACAGTAAAT-AG
1 TGCAGTAACAGTAAATCAG
7108084 TGCAGTAACAGT-AATCAG
1 TGCAGTAACAGTAAATCAG
**
7108102 TAAAGTAACAGTAAA-CAG
1 TGCAGTAACAGTAAATCAG
7108120 T
1 T
7108121 ATGCAAATCC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 3 0.09
18 28 0.85
19 2 0.06
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.22
Consensus pattern (19 bp):
TGCAGTAACAGTAAATCAG
Found at i:7109695 original size:40 final size:40
Alignment explanation
Indices: 7109612--7109832 Score: 225
Period size: 40 Copynumber: 5.5 Consensus size: 40
7109602 ACCCAAGTAT
** * *
7109612 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
7109650 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
7109690 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
7109730 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
7109770 CTTCGGATCTTAGTCCGAATATAGT-ATCTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCA-C-TAGCACAAATGC
* *
7109811 CTTCAGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
7109833 CATTCAAATA
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.11
40 95 0.63
41 27 0.18
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:7111887 original size:81 final size:81
Alignment explanation
Indices: 7111776--7111956 Score: 240
Period size: 81 Copynumber: 2.2 Consensus size: 81
7111766 GCAAAATCGC
* * * * *
7111776 CATTTTACCTCATAAGGGCAAAATCATCATTTTATCTCATAAGGGAAAAATC-ATCATTTTATCA
1 CATTTTGCCTCATAAGGGTAAAATCATCATTTTACCTCATAAGGGAAAAATCGCT-ATTTGATCA
7111840 CATAAGGGAAAAATAGT
65 CATAAGGGAAAAATAGT
* * *
7111857 CATTTTGCCACATAAGGGTAAAATCGTCATTTTACCTCATAAGGGCAAAATCGCTATTTGATCAC
1 CATTTTGCCTCATAAGGGTAAAATCATCATTTTACCTCATAAGGGAAAAATCGCTATTTGATCAC
*
7111922 ATAAGGGCAAAATAGT
66 ATAAGGGAAAAATAGT
*
7111938 CAATTTAG-CTCATAAGGGT
1 C-ATTTTGCCTCATAAGGGT
7111957 TTAGGTACGC
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
81 81 0.93
82 6 0.07
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (81 bp):
CATTTTGCCTCATAAGGGTAAAATCATCATTTTACCTCATAAGGGAAAAATCGCTATTTGATCAC
ATAAGGGAAAAATAGT
Found at i:7111953 original size:27 final size:27
Alignment explanation
Indices: 7111732--7111955 Score: 202
Period size: 27 Copynumber: 8.3 Consensus size: 27
7111722 ACATACATCA
* *
7111732 CATAGGGGCAAAACAGTCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
* ** * *
7111759 TATAAATGCAAAATCGCCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
*
7111786 CATAAGGGCAAAATCA-TCATTTTATCT
1 CATAAGGGCAAAAT-AGTCATTTTACCT
* * *
7111813 CATAAGGGAAAAATCA-TCATTTTATCA
1 CATAAGGGCAAAAT-AGTCATTTTACCT
* * *
7111840 CATAAGGGAAAAATAGTCATTTTGCCA
1 CATAAGGGCAAAATAGTCATTTTACCT
* *
7111867 CATAAGGGTAAAATCGTCATTTTACCT
1 CATAAGGGCAAAATAGTCATTTTACCT
* * * *
7111894 CATAAGGGCAAAATCG-CTATTTGATCA
1 CATAAGGGCAAAATAGTC-ATTTTACCT
* *
7111921 CATAAGGGCAAAATAGTCAATTTAGCT
1 CATAAGGGCAAAATAGTCATTTTACCT
7111948 CATAAGGG
1 CATAAGGG
7111956 TTTAGGTACG
Statistics
Matches: 163, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 2 0.01
27 160 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (27 bp):
CATAAGGGCAAAATAGTCATTTTACCT
Found at i:7115564 original size:93 final size:93
Alignment explanation
Indices: 7115431--7115602 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
7115421 CGCCCATAAG
* *
7115431 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
7115496 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
7115524 CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
7115589 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
7115603 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:7115599 original size:46 final size:46
Alignment explanation
Indices: 7115424--7115599 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
7115414 TGTAACCCGC
* * *
7115424 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
7115470 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
* * *
7115520 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
7115563 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
7115600 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:7120780 original size:66 final size:66
Alignment explanation
Indices: 7120674--7120806 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
7120664 AGCTTGGGAA
* *
7120674 CGAGGATTCATATTCCTTGACTTTCCAGGTTGCTGTGAAAATGAACCACTCATCGGTCTTTTCTT
1 CGAGGATTCATATTCCGTGACTTTCCAGGTTGCTGTGAAAATGAACCACTCATCAGTCTTTTCTT
7120739 C
66 C
* * *
7120740 CGAGGATTCATATTCCGTGACTTTCTAGGTTGCTGTGAAAATGATCCGCTCATCAGTCTTTTCTT
1 CGAGGATTCATATTCCGTGACTTTCCAGGTTGCTGTGAAAATGAACCACTCATCAGTCTTTTCTT
7120805 C
66 C
7120806 C
1 C
7120807 AATTTCTAGT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (66 bp):
CGAGGATTCATATTCCGTGACTTTCCAGGTTGCTGTGAAAATGAACCACTCATCAGTCTTTTCTT
C
Found at i:7123133 original size:46 final size:46
Alignment explanation
Indices: 7123066--7123240 Score: 307
Period size: 46 Copynumber: 3.8 Consensus size: 46
7123056 TGTAACCCAC
* * *
7123066 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
7123112 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
7123158 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
7123204 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
7123241 TGCTCAACCA
Statistics
Matches: 125, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
45 2 0.02
46 123 0.98
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7133136 original size:40 final size:40
Alignment explanation
Indices: 7133081--7133348 Score: 482
Period size: 40 Copynumber: 6.7 Consensus size: 40
7133071 GAGCATTGGA
7133081 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7133121 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7133161 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
*
7133201 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
*
7133241 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
* *
7133281 ATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
* *
7133321 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTATGACCCGAAGGCAA
7133349 ATGTGTTTGC
Statistics
Matches: 222, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 222 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
Found at i:7135363 original size:59 final size:59
Alignment explanation
Indices: 7135271--7135390 Score: 204
Period size: 59 Copynumber: 2.0 Consensus size: 59
7135261 GAATTTTGGT
* *
7135271 TGGACAACACTATCCGGGTACTCGACGAGCTATCTTGCACACCCGATGAGTGCCTAAAG
1 TGGACAACACTATCCGGGTACTAGACGAGCTATCTTGCACACCCGATGAATGCCTAAAG
* *
7135330 TGGACAACACTATCCGGGTACTAGATGAGCTATCTTGTACACCCGATGAATGCCTAAAG
1 TGGACAACACTATCCGGGTACTAGACGAGCTATCTTGCACACCCGATGAATGCCTAAAG
7135389 TG
1 TG
7135391 TGCTATCTCC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (59 bp):
TGGACAACACTATCCGGGTACTAGACGAGCTATCTTGCACACCCGATGAATGCCTAAAG
Found at i:7137305 original size:57 final size:57
Alignment explanation
Indices: 7137217--7137329 Score: 208
Period size: 57 Copynumber: 2.0 Consensus size: 57
7137207 AATTAAAGGG
7137217 AGCATCAGTGTTTTCAAAGATAGATTTGAGATCAGGTTATTATCAGTTGCGGATTCA
1 AGCATCAGTGTTTTCAAAGATAGATTTGAGATCAGGTTATTATCAGTTGCGGATTCA
* *
7137274 AGCATCGGTGTTTTCAAAGATAGATTTGAGATCGGGTTATTATCAGTTGCGGATTC
1 AGCATCAGTGTTTTCAAAGATAGATTTGAGATCAGGTTATTATCAGTTGCGGATTC
7137330 GAGATTCAGA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (57 bp):
AGCATCAGTGTTTTCAAAGATAGATTTGAGATCAGGTTATTATCAGTTGCGGATTCA
Found at i:7137333 original size:29 final size:29
Alignment explanation
Indices: 7137239--7137334 Score: 74
Period size: 29 Copynumber: 3.3 Consensus size: 29
7137229 TTCAAAGATA
* *
7137239 GATTTGAGATCAGGTTATTATCAGTTGCG
1 GATTCGAGATCGGGTTATTATCAGTTGCG
* * * *
7137268 GATTCAAGCATCGGTGTT-TTCA-AAGAT--A
1 GATTCGAG-ATCGG-GTTATT-ATCAGTTGCG
*
7137296 GATTTGAGATCGGGTTATTATCAGTTGCG
1 GATTCGAGATCGGGTTATTATCAGTTGCG
7137325 GATTCGAGAT
1 GATTCGAGAT
7137335 TCAGACGTAC
Statistics
Matches: 48, Mismatches: 12, Indels: 14
0.65 0.16 0.19
Matches are distributed among these distances:
26 4 0.08
27 10 0.21
28 6 0.12
29 15 0.31
30 9 0.19
31 4 0.08
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.35
Consensus pattern (29 bp):
GATTCGAGATCGGGTTATTATCAGTTGCG
Found at i:7137724 original size:96 final size:96
Alignment explanation
Indices: 7137560--7137751 Score: 357
Period size: 96 Copynumber: 2.0 Consensus size: 96
7137550 GCAAATTTTG
7137560 CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
1 CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
*
7137625 GGGTCATGTGGTATCTGCATCGGGTATTCGA
66 GGGTCATGTGGTATCCGCATCGGGTATTCGA
*
7137656 CGGGATAGGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
1 CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
*
7137721 GGGTCATGTGGTATCCGCGTCGGGTATTCGA
66 GGGTCATGTGGTATCCGCATCGGGTATTCGA
7137752 GTTGACCCGA
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.33
Consensus pattern (96 bp):
CGGGATAAGCAGTTATATGCTAAGTTCAGTAAGTGTGAGTTCTGGTTAAGAGAGGTTAGCTTCTT
GGGTCATGTGGTATCCGCATCGGGTATTCGA
Found at i:7139405 original size:51 final size:51
Alignment explanation
Indices: 7139324--7139421 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
7139314 CGGTGAAAGT
* *
7139324 AAAATTTTCGGAGTGGATTTGATTAAAGATGCTGAGCAGAAAGTAAAAATC
1 AAAATTTTCGGAGTGGATTTGATTAAAGATGCGGAACAGAAAGTAAAAATC
* *
7139375 AAAATTTTCGGAGTTGATTTGATTAGAGATGCGGAACAGAAAGTAAA
1 AAAATTTTCGGAGTGGATTTGATTAAAGATGCGGAACAGAAAGTAAA
7139422 GGTAATCCGT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (51 bp):
AAAATTTTCGGAGTGGATTTGATTAAAGATGCGGAACAGAAAGTAAAAATC
Found at i:7140043 original size:60 final size:60
Alignment explanation
Indices: 7139964--7140081 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 60
7139954 GGGGGAGAGT
* *
7139964 TGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCA
1 TGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCACAAAACCGAGTCA
7140024 TGTGACAGCCCTAAA-TTGACCCTAGTCGGGAAGTGGTTTCGGGACCACAAAACCGAGT
1 TGTGACAGCCC-AAAGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCACAAAACCGAGT
7140082 TAAGAAAATA
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
60 52 0.95
61 3 0.05
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (60 bp):
TGTGACAGCCCAAAGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCACAAAACCGAGTCA
Found at i:7142208 original size:40 final size:40
Alignment explanation
Indices: 7142149--7142376 Score: 393
Period size: 40 Copynumber: 5.7 Consensus size: 40
7142139 GAGCATTGGA
* *
7142149 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
7142189 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
7142229 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
7142269 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
7142309 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
* *
7142349 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
7142377 ATGTGTTTGC
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 181 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
Found at i:7147970 original size:163 final size:163
Alignment explanation
Indices: 7147696--7148020 Score: 605
Period size: 163 Copynumber: 2.0 Consensus size: 163
7147686 ATCGAGTCAC
*
7147696 AATGGACTTTGTGTCCGGACTGCCTTTGTCAGCAAGTAAGAAGGATGCGATATGGGTTATTGTTG
1 AATGGACTTTGTGTCCGGACTGCCCTTGTCAGCAAGTAAGAAGGATGCGATATGGGTTATTGTTG
7147761 ATAGACTGACTAAGTCGGCTCATTTCATCCCCGTACGTACGGATTTTTCATTGGAGAAACTAGCT
66 ATAGACTGACTAAGTCGGCTCATTTCATCCCCGTACGTACGGATTTTTCATTGGAGAAACTAGCT
7147826 GAATTGTACGTTTATCAAATTGTGAGATTACAT
131 GAATTGTACGTTTATCAAATTGTGAGATTACAT
* *
7147859 AATGGACTTTGTGTCCGGACTGCCCTTGTCAGCAAGTAAGAAGGATGCGTTATGGGTTGTTGTTG
1 AATGGACTTTGTGTCCGGACTGCCCTTGTCAGCAAGTAAGAAGGATGCGATATGGGTTATTGTTG
* *
7147924 ATAGACTGACTAAGTCGGCTCATTTCATCCCCGTACGTATGGATTTTTCATTGGATAAACTAGCT
66 ATAGACTGACTAAGTCGGCTCATTTCATCCCCGTACGTACGGATTTTTCATTGGAGAAACTAGCT
7147989 GAATTGTACGTTTATCAAATTGTGAGATTACA
131 GAATTGTACGTTTATCAAATTGTGAGATTACA
7148021 CGGGGTACCT
Statistics
Matches: 157, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
163 157 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (163 bp):
AATGGACTTTGTGTCCGGACTGCCCTTGTCAGCAAGTAAGAAGGATGCGATATGGGTTATTGTTG
ATAGACTGACTAAGTCGGCTCATTTCATCCCCGTACGTACGGATTTTTCATTGGAGAAACTAGCT
GAATTGTACGTTTATCAAATTGTGAGATTACAT
Found at i:7151125 original size:40 final size:40
Alignment explanation
Indices: 7151066--7151411 Score: 483
Period size: 40 Copynumber: 8.7 Consensus size: 40
7151056 GAGCATTGGA
*
7151066 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
7151106 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
7151146 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
7151186 ATATATCCGGGCTAGTTGATATATCCG--GGC---TA---GAGATG
1 ATATATCCGGGC----T-A-AGACCCGAAGGCAATTATGCGAGTTG
7151224 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
7151264 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
7151304 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
7151344 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
7151384 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
7151412 ATGTGTTTGC
Statistics
Matches: 275, Mismatches: 17, Indels: 28
0.86 0.05 0.09
Matches are distributed among these distances:
32 5 0.02
33 1 0.00
34 4 0.01
37 2 0.01
38 17 0.06
40 235 0.85
41 2 0.01
44 4 0.01
45 1 0.00
46 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:7151204 original size:18 final size:18
Alignment explanation
Indices: 7151181--7151237 Score: 87
Period size: 18 Copynumber: 3.1 Consensus size: 18
7151171 CAATTATGCG
7151181 AGTTGATATATCCGGGCT
1 AGTTGATATATCCGGGCT
7151199 AGTTGATATATCCGGGCT
1 AGTTGATATATCCGGGCT
*
7151217 AGAGATGATATATCCGGGCT
1 --AGTTGATATATCCGGGCT
7151237 A
1 A
7151238 AGACCCGAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
18 19 0.53
20 17 0.47
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (18 bp):
AGTTGATATATCCGGGCT
Found at i:7151225 original size:20 final size:19
Alignment explanation
Indices: 7151184--7151240 Score: 89
Period size: 20 Copynumber: 3.0 Consensus size: 19
7151174 TTATGCGAGT
*
7151184 TGATATATCCGGGCT-AGT
1 TGATATATCCGGGCTAAGA
7151202 TGATATATCCGGGCTAGAGA
1 TGATATATCCGGGCTA-AGA
7151222 TGATATATCCGGGCTAAGA
1 TGATATATCCGGGCTAAGA
7151241 CCCGAAGGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
18 15 0.42
19 3 0.08
20 18 0.50
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (19 bp):
TGATATATCCGGGCTAAGA
Found at i:7151312 original size:118 final size:115
Alignment explanation
Indices: 7151066--7151411 Score: 455
Period size: 118 Copynumber: 2.9 Consensus size: 115
7151056 GAGCATTGGA
** *
7151066 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAAACCCG-AGGC-A-TA--CGAGATGATATATCCGGGCTAAGACCCGAAGG
*
7151131 CAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
61 CAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
*
7151186 ATATATCCGGGCTAGTTGATATATCCG-GGC-TA-GAGATGATATATCCGGGCTAAGACCCGAAG
1 ATATATCCGGGCTA----A-A-ACCCGAGGCATACGAGATGATATATCCGGGCTAAGACCCGAAG
7151248 GCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
60 GCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
7151304 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAAACCCG-AGGC-A-TA--CGAGATGATATATCCGGGCTAAGACCCGAAGG
* * *
7151369 CAATTATGCGAGTTGATATGTTCGGGCTAAGACCCGAAGGCAA
61 CAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAA
7151412 ATGTGTTTGC
Statistics
Matches: 203, Mismatches: 9, Indels: 28
0.85 0.04 0.12
Matches are distributed among these distances:
112 4 0.02
113 1 0.00
114 4 0.02
117 2 0.01
118 98 0.48
120 85 0.42
121 2 0.01
124 3 0.01
126 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (115 bp):
ATATATCCGGGCTAAAACCCGAGGCATACGAGATGATATATCCGGGCTAAGACCCGAAGGCAATT
ATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
Found at i:7151354 original size:158 final size:158
Alignment explanation
Indices: 7151066--7151357 Score: 530
Period size: 158 Copynumber: 1.8 Consensus size: 158
7151056 GAGCATTGGA
*
7151066 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
* ** *
7151131 CAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTGATATATCCGG
66 CAATTATGCGAGATGATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATGATATATCCGG
7151196 GCTAGTTGATATATCCGGGCTAGAGATG
131 GCTAGTTGATATATCCGGGCTAGAGATG
*
7151224 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
7151289 CAATTATGCGAGATGATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATGATATATCCGG
66 CAATTATGCGAGATGATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATGATATATCCGG
7151354 GCTA
131 GCTA
7151358 AGACCCGAAG
Statistics
Matches: 128, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
158 128 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (158 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CAATTATGCGAGATGATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATGATATATCCGG
GCTAGTTGATATATCCGGGCTAGAGATG
Found at i:7159782 original size:40 final size:40
Alignment explanation
Indices: 7159723--7160670 Score: 1770
Period size: 40 Copynumber: 23.7 Consensus size: 40
7159713 GAGCATTGGA
** *
7159723 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
* *
7159763 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
**
7159803 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7159843 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7159883 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7159923 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7159963 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160003 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160043 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160083 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160123 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160163 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160203 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160243 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160283 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160323 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160363 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160403 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160443 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160483 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
**
7160523 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
7160563 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
* *
7160603 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
* * *
7160643 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAAACCCGAAGGCAA
7160671 ATGTGTTTGC
Statistics
Matches: 895, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 895 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
Found at i:7169035 original size:40 final size:40
Alignment explanation
Indices: 7168980--7169967 Score: 1868
Period size: 40 Copynumber: 24.7 Consensus size: 40
7168970 GAGCACTGGA
7168980 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169020 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169060 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169100 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169140 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169180 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169220 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169260 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169300 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169340 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169380 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169420 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169460 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169500 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169540 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169580 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169620 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169660 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169700 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
7169740 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
*
7169780 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
** *
7169820 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
** *
7169860 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
* *
7169900 ATATATTCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
* * *
7169940 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTATGACCCGAAGGCAA
7169968 ATGTGTTTGC
Statistics
Matches: 941, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 941 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
Found at i:7175660 original size:39 final size:39
Alignment explanation
Indices: 7175617--7175695 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
7175607 GACCGAGCTC
*
7175617 GGTGAAAGTAAAATTTTCGGAGTTGATTTGATTAGAGAT
1 GGTGAAAGCAAAATTTTCGGAGTTGATTTGATTAGAGAT
7175656 GGTGAAAGCAAAATTTTCGGAGTTGATTTGATTAGAGAT
1 GGTGAAAGCAAAATTTTCGGAGTTGATTTGATTAGAGAT
7175695 G
1 G
7175696 CGGAACAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.04, G:0.29, T:0.34
Consensus pattern (39 bp):
GGTGAAAGCAAAATTTTCGGAGTTGATTTGATTAGAGAT
Found at i:7178613 original size:40 final size:40
Alignment explanation
Indices: 7178565--7178697 Score: 230
Period size: 40 Copynumber: 3.3 Consensus size: 40
7178555 GGGAAAAAGT
7178565 GACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAA
1 GACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAA
*
7178605 AACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAA
1 GACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAA
* * *
7178645 GACCCGAAGGCAATTATGCGAGTTGATATGTTCGGGCTAA
1 GACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAA
7178685 GACCCGAAGGCAA
1 GACCCGAAGGCAA
7178698 ATGTGTTTGC
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.32, C:0.20, G:0.28, T:0.20
Consensus pattern (40 bp):
GACCCGAAGGCAATTATGCGAGATGATATATCCGGGCTAA
Found at i:7183424 original size:29 final size:30
Alignment explanation
Indices: 7183392--7183451 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
7183382 TCCTTAACTC
7183392 AAACTTTGGAAAAATTACA-TTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * * *
7183421 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
7183451 A
1 A
7183452 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:7187729 original size:18 final size:17
Alignment explanation
Indices: 7187702--7187735 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7187692 GGAGAGAATA
7187702 ATAAAATAAAAATAATC
1 ATAAAATAAAAATAATC
*
7187719 ATAATAATAAAACTAAT
1 ATAA-AATAAAAATAAT
7187736 AATTATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAAATAAAAATAATC
Found at i:7193551 original size:29 final size:29
Alignment explanation
Indices: 7193518--7193579 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
7193508 AAAAAAAGGA
* *
7193518 ATTTAGTTTTCGGCTTGGCATTGTTTGCT
1 ATTTAGTTTTCAGCTTGGCATCGTTTGCT
7193547 ATTTAGTTTTCAGCTTGGCATCGTTTGCT
1 ATTTAGTTTTCAGCTTGGCATCGTTTGCT
7193576 ATTT
1 ATTT
7193580 TTTGAATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.13, C:0.15, G:0.21, T:0.52
Consensus pattern (29 bp):
ATTTAGTTTTCAGCTTGGCATCGTTTGCT
Found at i:7196467 original size:46 final size:46
Alignment explanation
Indices: 7196417--7196589 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
7196407 TGGTTGAGCA
7196417 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7196463 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7196508 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
7196556 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
7196590 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7196573 original size:93 final size:93
Alignment explanation
Indices: 7196414--7196584 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
7196404 GGATGGTTGA
* *
7196414 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7196479 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
7196507 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7196572 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
7196585 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7204050 original size:46 final size:46
Alignment explanation
Indices: 7204000--7204175 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
7203990 TGGTTGAGCA
7204000 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7204046 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
7204091 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
7204139 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
7204176 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:7204156 original size:93 final size:93
Alignment explanation
Indices: 7203997--7204168 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
7203987 GGATGGTTGA
* *
7203997 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7204062 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
7204090 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
7204155 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
7204169 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7211648 original size:46 final size:46
Alignment explanation
Indices: 7211581--7211750 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 46
7211571 TGGTTGAGCA
7211581 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAATG
* * * *
7211627 TCCGAACTCGTTGAGTTGAGTCTGAGTT--CGT-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAA-T--G
* * *
7211672 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAATG
* * * * *
7211720 CCCGAGCTCATTTAGTTGATTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
7211751 TTAGGGGCGG
Statistics
Matches: 100, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 2 0.02
45 1 0.01
46 53 0.53
47 27 0.27
48 1 0.01
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAATG
Found at i:7211737 original size:93 final size:93
Alignment explanation
Indices: 7211578--7211748 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
7211568 GGATGGTTGA
* * *
7211578 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCATTGAGT
*
7211643 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
7211671 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTTAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCATTGAGT
*
7211736 TGATTCCGAGTTC
66 TGAGTCCGAGTTC
7211749 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7239926 original size:55 final size:54
Alignment explanation
Indices: 7239831--7239980 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
7239821 CTACTTTGTT
* ** * *
7239831 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
7239885 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
7239940 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
7239981 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:7239943 original size:27 final size:27
Alignment explanation
Indices: 7239803--7239980 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
7239793 TAAATTGTAC
7239803 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
7239830 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
7239856 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
7239884 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
7239912 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
7239939 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
7239966 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
7239981 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:7239944 original size:82 final size:81
Alignment explanation
Indices: 7239804--7239959 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
7239794 AAATTGTACA
* * * *
7239804 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
7239869 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
7239885 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
7239948 TGTGCGAGTTGA
63 TGTGCGAATTGA
7239960 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:7246170 original size:263 final size:264
Alignment explanation
Indices: 7245684--7246211 Score: 905
Period size: 263 Copynumber: 2.0 Consensus size: 264
7245674 TTCCAAATAC
* * *
7245684 TTCTGAACCAGGTTAGTGAAAATAGAGATCATACATCTTTTTGAAATGTAGCAAGTGCATTACAT
1 TTCTCAACCAGGTTAGTAAAAATAGACATCATACATCTTTTTGAAATGTAGCAAGTGCATTACAT
7245749 AAACCAAATGGCATGCGTCTAAATGAAAATGTACCATACGGGCAGGTGAATGTTGTCTTGTGTTG
66 AAACCAAATGGCATGCGTCTAAATGAAAATGTACCATACGGGCAGGTGAATGTTGTCTTGTGTTG
7245814 ATCTTCCGGAGCTATTGTAACATAATTATACCCTAAGTATCCATCAAGAAAATAGTAATAGTCTC
131 ATCTTCCGGAGCTATTGTAACATAATTATACCCTAAGTATCCATCAAGAAAATAGTAATAGTCTC
** * * * **
7245879 GCTTTGTGAGTCTATCCAACATCTGGTCCAAAAATGGTAAAGGAAAGAGCTCTTTTCTAGTTGCC
196 GCCCTGCGAGTCTATCCAACATCTGGTCCAAAAATGGTAAAGGAAAGAGATCTTTCCTAGTCACC
7245944 TTGT
261 TTGT
*
7245948 TTCTCAACCATGTTAGTAAAAATAGACATCATACATCTTTTTGAAATGTAGCAAGTGCATTACAT
1 TTCTCAACCAGGTTAGTAAAAATAGACATCATACATCTTTTTGAAATGTAGCAAGTGCATTACAT
* *
7246013 AAACCAAATGGCATGCGTCTAAATG-AAATGTATCGTACGGGCAGGTGAATGTTGTCTTGTGTTG
66 AAACCAAATGGCATGCGTCTAAATGAAAATGTACCATACGGGCAGGTGAATGTTGTCTTGTGTTG
* *
7246077 ATCTTCCGGAGCTATTGTAATATGATTATACCCTAAGTATCCATCAAGAAAATAGTAATAGTCTC
131 ATCTTCCGGAGCTATTGTAACATAATTATACCCTAAGTATCCATCAAGAAAATAGTAATAGTCTC
*
7246142 GCCCTGCGAGTCTATCCAACATCTGGTCCAAAAATGGTAAAGGAAAGTGATCTTTCCTAGTCACC
196 GCCCTGCGAGTCTATCCAACATCTGGTCCAAAAATGGTAAAGGAAAGAGATCTTTCCTAGTCACC
7246207 TTGT
261 TTGT
7246211 T
1 T
7246212 CAGCTTTCGA
Statistics
Matches: 248, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
263 162 0.65
264 86 0.35
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (264 bp):
TTCTCAACCAGGTTAGTAAAAATAGACATCATACATCTTTTTGAAATGTAGCAAGTGCATTACAT
AAACCAAATGGCATGCGTCTAAATGAAAATGTACCATACGGGCAGGTGAATGTTGTCTTGTGTTG
ATCTTCCGGAGCTATTGTAACATAATTATACCCTAAGTATCCATCAAGAAAATAGTAATAGTCTC
GCCCTGCGAGTCTATCCAACATCTGGTCCAAAAATGGTAAAGGAAAGAGATCTTTCCTAGTCACC
TTGT
Found at i:7272157 original size:24 final size:24
Alignment explanation
Indices: 7272130--7272175 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7272120 TTAAGGAATG
*
7272130 GATTATGGAGAAAATCAAGGAGAA
1 GATTAGGGAGAAAATCAAGGAGAA
* *
7272154 GATTAGGGAGGAAATCATGGAG
1 GATTAGGGAGAAAATCAAGGAG
7272176 GGATTTAGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.04, G:0.35, T:0.17
Consensus pattern (24 bp):
GATTAGGGAGAAAATCAAGGAGAA
Found at i:7281929 original size:412 final size:412
Alignment explanation
Indices: 7281165--7281989 Score: 1632
Period size: 412 Copynumber: 2.0 Consensus size: 412
7281155 GGTTAGAATC
7281165 GAAATTGAATTGAAAATTTTCCTAATTAGAAAAATGACTAGTCATCAATTGCGTACAACAGAGCT
1 GAAATTGAATTGAAAATTTTCCTAATTAGAAAAATGACTAGTCATCAATTGCGTACAACAGAGCT
*
7281230 TTTTCTCATAATATGGAATTTAACTTCATTAGCTCAGAAGATCACTACTACTAATATGTATACAT
66 TTTTCTCATAATATGGAATTTAACTTCATTAGCTCAGAAGATCACTACTACTAACATGTATACAT
7281295 GTATTTTTTTTAAGAACAAGTCAAATTACAAAATAGAATAAAACATAGCTAAGCAACTATTCCAA
131 GTATTTTTTTTAAGAACAAGTCAAATTACAAAATAGAATAAAACATAGCTAAGCAACTATTCCAA
7281360 CTTAGATCTTGACAAAAATTGGGATCAAATTAATTTAGGGGATTTCAACAATAATGAGTTATGGG
196 CTTAGATCTTGACAAAAATTGGGATCAAATTAATTTAGGGGATTTCAACAATAATGAGTTATGGG
7281425 TTAATATTGAGGGTAAATTAATGAATGGGTTGTTAGGCTCAAGGGGGTTCACTAAGGGTTAATTG
261 TTAATATTGAGGGTAAATTAATGAATGGGTTGTTAGGCTCAAGGGGGTTCACTAAGGGTTAATTG
7281490 TGAAGGTAGACTTTTATGGATTGAGTGGGTTAAACTAAGTTCCTTTATCATTTTGACATATCAAA
326 TGAAGGTAGACTTTTATGGATTGAGTGGGTTAAACTAAGTTCCTTTATCATTTTGACATATCAAA
7281555 TCAAATGGTGTGGTCTTGACAT
391 TCAAATGGTGTGGTCTTGACAT
7281577 GAAATTGAATTGAAAATTTTCCTAATTAGAAAAATGACTAGTCATCAATTGCGTACAACAGAGCT
1 GAAATTGAATTGAAAATTTTCCTAATTAGAAAAATGACTAGTCATCAATTGCGTACAACAGAGCT
*
7281642 TTTTCTCATAATATGGAATTTAACTTCATTAGCTCAGACGATCACTACTACTAACATGTATACAT
66 TTTTCTCATAATATGGAATTTAACTTCATTAGCTCAGAAGATCACTACTACTAACATGTATACAT
7281707 GTATTTTTTTTAAGAACAAGTCAAATTACAAAATAGAATAAAACATAGCTAAGCAACTATTCCAA
131 GTATTTTTTTTAAGAACAAGTCAAATTACAAAATAGAATAAAACATAGCTAAGCAACTATTCCAA
7281772 CTTAGATCTTGACAAAAATTGGGATCAAATTAATTTAGGGGATTTCAACAATAATGAGTTATGGG
196 CTTAGATCTTGACAAAAATTGGGATCAAATTAATTTAGGGGATTTCAACAATAATGAGTTATGGG
7281837 TTAATATTGAGGGTAAATTAATGAATGGGTTGTTAGGCTCAAGGGGGTTCACTAAGGGTTAATTG
261 TTAATATTGAGGGTAAATTAATGAATGGGTTGTTAGGCTCAAGGGGGTTCACTAAGGGTTAATTG
7281902 TGAAGGTAGACTTTTATGGATTGAGTGGGTTAAACTAAGTTCCTTTATCATTTTGACATATCAAA
326 TGAAGGTAGACTTTTATGGATTGAGTGGGTTAAACTAAGTTCCTTTATCATTTTGACATATCAAA
7281967 TCAAATGGTGTGGTCTTGACAT
391 TCAAATGGTGTGGTCTTGACAT
7281989 G
1 G
7281990 CATAATCAAG
Statistics
Matches: 411, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
412 411 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (412 bp):
GAAATTGAATTGAAAATTTTCCTAATTAGAAAAATGACTAGTCATCAATTGCGTACAACAGAGCT
TTTTCTCATAATATGGAATTTAACTTCATTAGCTCAGAAGATCACTACTACTAACATGTATACAT
GTATTTTTTTTAAGAACAAGTCAAATTACAAAATAGAATAAAACATAGCTAAGCAACTATTCCAA
CTTAGATCTTGACAAAAATTGGGATCAAATTAATTTAGGGGATTTCAACAATAATGAGTTATGGG
TTAATATTGAGGGTAAATTAATGAATGGGTTGTTAGGCTCAAGGGGGTTCACTAAGGGTTAATTG
TGAAGGTAGACTTTTATGGATTGAGTGGGTTAAACTAAGTTCCTTTATCATTTTGACATATCAAA
TCAAATGGTGTGGTCTTGACAT
Found at i:7296046 original size:25 final size:25
Alignment explanation
Indices: 7296018--7296087 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
7296008 CTCTTTTAAT
*
7296018 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
7296043 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
7296068 AACTGGGGCATAGCCGTTTT
1 AACTGGGGCAAAGCCCTTTT
7296088 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:7296139 original size:16 final size:16
Alignment explanation
Indices: 7296118--7296148 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7296108 AACCCAACCC
*
7296118 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
7296134 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
7296149 CCCATAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:7297045 original size:27 final size:27
Alignment explanation
Indices: 7297015--7297100 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
7297005 GTAAATCTAC
7297015 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
7297042 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
7297068 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
7297098 AAA
1 AAA
7297101 TTAGGGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 18 0.37
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:7297118 original size:27 final size:27
Alignment explanation
Indices: 7297078--7297261 Score: 176
Period size: 27 Copynumber: 6.8 Consensus size: 27
7297068 AGAAAGTCAA
** *
7297078 GGGTATTTCT-GTAATTTTGTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
7297105 GGGTATTTTGGTAATTTTAC-AACTTG
1 GGGTATTTTGGTAATTTTACAAACTAG
*** * *
7297131 AGGGTATTTCATTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
7297159 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
7297186 GAGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
* **
7297213 GGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTTGGTAATTTTA-CAAACTAG
**
7297240 GGGTATTTCAGTAATTTTACAA
1 GGGTATTTTGGTAATTTTACAA
7297262 TCGAGGGTAA
Statistics
Matches: 126, Mismatches: 27, Indels: 9
0.78 0.17 0.06
Matches are distributed among these distances:
26 6 0.05
27 113 0.90
28 7 0.06
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:7297254 original size:81 final size:81
Alignment explanation
Indices: 7297078--7297261 Score: 194
Period size: 81 Copynumber: 2.3 Consensus size: 81
7297068 AGAAAGTCAA
* ** * * * *
7297078 GGGTATTTCTGTAATTTTGTAAATTAGGGGTATTTTGGTAATTTTACAACTTGAGGGTATTTCAT
1 GGGTATTTCAGTAATTTTACAAACTAGGAGTATTTTGGTAATTTTACAACTAGAGGGTATTTCAG
7297143 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* ** **
7297159 TGGTATTTTGGTAATTTTACAAACTAGGAGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTG
1 GGGTATTTCAGTAATTTTACAAACTAGGAGTATTTTGGTAATTTTAC-AACTAGAGGGTATTTCA
**
7297223 GTAA-TTCTATCCTA-CAG
65 GTAATTTC-A-CAAACCAG
7297240 GGGTATTTCAGTAATTTTACAA
1 GGGTATTTCAGTAATTTTACAA
7297262 TCGAGGGTAA
Statistics
Matches: 84, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
80 3 0.04
81 74 0.88
82 7 0.08
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.42
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAACTAGGAGTATTTTGGTAATTTTACAACTAGAGGGTATTTCAG
TAATTTCACAAACCAG
Found at i:7297325 original size:27 final size:27
Alignment explanation
Indices: 7297260--7297351 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
7297250 GTAATTTTAC
7297260 AATCGAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACAATAATTTTGTA
** ***
7297287 AA-CTGAAAGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACAATAATTTTGTA
* *
7297314 AATCGAGGGTAAAACAATAATTCTATA
1 AATCGAGGGTAAAACAATAATTTTGTA
*
7297341 AATCGAAGGTA
1 AATCGAGGGTA
7297352 CTTTGGTAAT
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 1 0.02
27 48 0.96
28 1 0.02
ACGTcount: A:0.46, C:0.08, G:0.18, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACAATAATTTTGTA
Found at i:7298669 original size:45 final size:46
Alignment explanation
Indices: 7298633--7298720 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
7298623 CTAGGATATT
*
7298633 TGAATTCC-AAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATG
1 TGAATGCCTAAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATG
* * * *
7298678 TGAATGCCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TGAATGCCTAAACTCGTTGAGTTAAGTCCGAGTTCACTTATGG
7298721 GCAGTTTACA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 7 0.19
46 30 0.81
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (46 bp):
TGAATGCCTAAACTCGTTGAGTTAAGTCCGAGTTCACTTATGGATG
Found at i:7310013 original size:42 final size:43
Alignment explanation
Indices: 7309939--7310023 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 43
7309929 GAGATATGCG
*
7309939 GCATCCGAGCTTGTTGAGTGGTCCGAGATCATTATGGATGTGA
1 GCATCCGAGCTTGTTGAGTGGTCCGAGATCATTATAGATGTGA
* ** * *
7309982 GCATCCGGGC-TGTTGAGTGGTTTGAGTTCATTGTAGATGTGA
1 GCATCCGAGCTTGTTGAGTGGTCCGAGATCATTATAGATGTGA
7310024 TGCCTGTGAC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 27 0.75
43 9 0.25
ACGTcount: A:0.19, C:0.14, G:0.34, T:0.33
Consensus pattern (43 bp):
GCATCCGAGCTTGTTGAGTGGTCCGAGATCATTATAGATGTGA
Found at i:7314074 original size:15 final size:15
Alignment explanation
Indices: 7314056--7314096 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
7314046 TTATATATTT
7314056 TGGATTTCTTTGTCA
1 TGGATTTCTTTGTCA
* *
7314071 TGGATTTTTTTTGTCT
1 TGGA-TTTCTTTGTCA
7314087 TGGATTTCTT
1 TGGATTTCTT
7314097 ATTTTTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.10, C:0.10, G:0.20, T:0.61
Consensus pattern (15 bp):
TGGATTTCTTTGTCA
Found at i:7323101 original size:46 final size:46
Alignment explanation
Indices: 7323034--7323162 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
7323024 TGTAACCCGC
* * * *
7323034 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
7323080 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
7323126 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
7323163 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:7323181 original size:46 final size:45
Alignment explanation
Indices: 7323042--7323181 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
7323032 GCCCATAAGC
* ** * *
7323042 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
7323088 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
7323134 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
7323180 GA
1 GA
7323182 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:7331337 original size:30 final size:30
Alignment explanation
Indices: 7331303--7331362 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
7331293 ATTTAATACG
7331303 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
7331333 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
7331363 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:7332589 original size:26 final size:27
Alignment explanation
Indices: 7332532--7332589 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
7332522 TTTTCTCTTA
7332532 AATTTTAATTTTATTCTAATAATTAAT
1 AATTTTAATTTTATTCTAATAATTAAT
* *
7332559 -TTTTTAATTTT-TT-TGAATCATTAAT
1 AATTTTAATTTTATTCT-AATAATTAAT
7332584 AATTTT
1 AATTTT
7332590 TATTAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
24 1 0.04
25 11 0.42
26 14 0.54
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (27 bp):
AATTTTAATTTTATTCTAATAATTAAT
Found at i:7339785 original size:18 final size:18
Alignment explanation
Indices: 7339762--7339797 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
7339752 GAGATTAGTT
7339762 CAATTTAATTAGTATGTA
1 CAATTTAATTAGTATGTA
7339780 CAATTTAATTAGTATGTA
1 CAATTTAATTAGTATGTA
7339798 TGTGCAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (18 bp):
CAATTTAATTAGTATGTA
Found at i:7344198 original size:24 final size:24
Alignment explanation
Indices: 7344171--7344217 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
7344161 CCTTATTTTT
7344171 TATTTATATACTTACTTACTAAGC
1 TATTTATATACTTACTTACTAAGC
7344195 TATTTATATACTTACTTACTAAG
1 TATTTATATACTTACTTACTAAG
7344218 TTATAAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.15, G:0.04, T:0.47
Consensus pattern (24 bp):
TATTTATATACTTACTTACTAAGC
Found at i:7344221 original size:20 final size:21
Alignment explanation
Indices: 7344173--7344231 Score: 68
Period size: 24 Copynumber: 2.7 Consensus size: 21
7344163 TTATTTTTTA
7344173 TTTATATACTTACTTACTAAG
1 TTTATATACTTACTTACTAAG
7344194 CTATTTATATACTTACTTACTAAG
1 ---TTTATATACTTACTTACTAAG
7344218 -TTATA-AGCTTACTT
1 TTTATATA-CTTACTT
7344232 TCTTTTCTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 1 0.03
20 12 0.35
24 21 0.62
ACGTcount: A:0.32, C:0.15, G:0.05, T:0.47
Consensus pattern (21 bp):
TTTATATACTTACTTACTAAG
Found at i:7350836 original size:22 final size:22
Alignment explanation
Indices: 7350820--7350862 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7350810 AATGGTTATA
7350820 AACCATAATCAGGATGGCACAG
1 AACCATAATCAGGATGGCACAG
*
7350842 AGCCATAATCAGGATGGCACA
1 AACCATAATCAGGATGGCACA
7350863 AGGCTATCGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.14
Consensus pattern (22 bp):
AACCATAATCAGGATGGCACAG
Found at i:7350942 original size:27 final size:27
Alignment explanation
Indices: 7350912--7351015 Score: 84
Period size: 27 Copynumber: 3.9 Consensus size: 27
7350902 CAGCGACAGT
*
7350912 AATATAATCGGCACATAGCCATAGGTA
1 AATATGATCGGCACATAGCCATAGGTA
* * * *
7350939 AATATGATCGACACAGAGTCATCA-ATA
1 AATATGATCGGCACATAGCCAT-AGGTA
* * * *
7350966 AATATGATAGGAACTTAGCCACAGGTA
1 AATATGATCGGCACATAGCCATAGGTA
* * *
7350993 AATACGATTGGCACAAAGCCATA
1 AATATGATCGGCACATAGCCATA
7351016 CTCAAGATGG
Statistics
Matches: 56, Mismatches: 19, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21
Consensus pattern (27 bp):
AATATGATCGGCACATAGCCATAGGTA
Found at i:7351048 original size:22 final size:22
Alignment explanation
Indices: 7351000--7351059 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
7350990 GTAAATACGA
*
7351000 TTGGCACAAAGCCATACTCAAG
1 TTGGCACAGAGCCATACTCAAG
* * * *
7351022 ATGGCACAGAGCCATATTTAGG
1 TTGGCACAGAGCCATACTCAAG
7351044 TTGGCACAGAGCCATA
1 TTGGCACAGAGCCATA
7351060 ATCAGATTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAGAGCCATACTCAAG
Found at i:7351354 original size:34 final size:34
Alignment explanation
Indices: 7351293--7351367 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
7351283 TAAAAGCATA
* *
7351293 ACAGTCATACGACTATATTCAAGTCAGTTAAAA-C
1 ACAGTCATACGACTATAGTCAAATCAG-TAAAATC
7351327 ACAGTCATACGA-TCATAGTCAAATCAGTAAAATTC
1 ACAGTCATACGACT-ATAGTCAAATCAGTAAAA-TC
7351362 ACAGTC
1 ACAGTC
7351368 TAAGTCGGTC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
33 6 0.17
34 23 0.64
35 7 0.19
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.25
Consensus pattern (34 bp):
ACAGTCATACGACTATAGTCAAATCAGTAAAATC
Found at i:7351433 original size:27 final size:26
Alignment explanation
Indices: 7351403--7351486 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
7351393 CAAAATAGTC
*
7351403 ATTTTGGCCTACAGGGGTATTTCAGTA
1 ATTTT-GCCTACAAGGGTATTTCAGTA
* *
7351430 ATTTTACACTACAAGGGTA-TTCGGTA
1 ATTTTGC-CTACAAGGGTATTTCAGTA
7351456 ATTGTATG-CTACAAGGGTATTTCAGTA
1 ATT-T-TGCCTACAAGGGTATTTCAGTA
7351483 ATTT
1 ATTT
7351487 CAAAAACTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
26 22 0.46
27 25 0.52
28 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTTGCCTACAAGGGTATTTCAGTA
Found at i:7351467 original size:26 final size:27
Alignment explanation
Indices: 7351411--7351485 Score: 98
Period size: 26 Copynumber: 2.8 Consensus size: 27
7351401 TCATTTTGGC
* *
7351411 CTACAGGGGTATTTCAGTAATTTTACA
1 CTACAAGGGTATTTCAGTAATTGTACA
* **
7351438 CTACAAGGGTA-TTCGGTAATTGTATG
1 CTACAAGGGTATTTCAGTAATTGTACA
7351464 CTACAAGGGTATTTCAGTAATT
1 CTACAAGGGTATTTCAGTAATT
7351486 TCAAAAACTG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.54
27 19 0.46
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.36
Consensus pattern (27 bp):
CTACAAGGGTATTTCAGTAATTGTACA
Found at i:7351595 original size:54 final size:54
Alignment explanation
Indices: 7351495--7351600 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
7351485 TTCAAAAACT
* * *
7351495 GGGGGTATTTCGATAATTTTATCAATTGGGGGTATTTCGGTAATTTTACAATTC
1 GGGGGTATTTCGATAAATTTATCAACTGGGAGTATTTCGGTAATTTTACAATTC
*
7351549 GGGGGTATTTTGATAAATTTA-CAAACTGGGAGTATTTCGGTAATTTTACAAT
1 GGGGGTATTTCGATAAATTTATC-AACTGGGAGTATTTCGGTAATTTTACAAT
7351601 CCAGGGTCAT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
53 1 0.02
54 46 0.98
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (54 bp):
GGGGGTATTTCGATAAATTTATCAACTGGGAGTATTTCGGTAATTTTACAATTC
Found at i:7351596 original size:27 final size:27
Alignment explanation
Indices: 7351470--7351599 Score: 138
Period size: 27 Copynumber: 4.8 Consensus size: 27
7351460 TATGCTACAA
* * *
7351470 GGGTATTTCAGTAATTTCAAAAACTGG
1 GGGTATTTCGGTAATTTTACAAACTGG
* *
7351497 GGGTATTTCGATAATTTTATC-AATTGG
1 GGGTATTTCGGTAATTTTA-CAAACTGG
*
7351524 GGGTATTTCGGTAATTTTAC-AATTCGG
1 GGGTATTTCGGTAATTTTACAAACT-GG
* * *
7351551 GGGTATTTTGATAAATTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAACTGG
*
7351578 GAGTATTTCGGTAATTTTACAA
1 GGGTATTTCGGTAATTTTACAA
7351600 TCCAGGGTCA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 5 0.06
27 78 0.91
28 3 0.03
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAACTGG
Found at i:7355433 original size:5 final size:5
Alignment explanation
Indices: 7355416--7355445 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
7355406 CCATTCTTCC
*
7355416 TTCTT TTCCT TTCTT TTCTT TTCTT TTCTT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT
7355446 CTCCATCTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
TTCTT
Found at i:7356544 original size:28 final size:28
Alignment explanation
Indices: 7356504--7356571 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
7356494 TAGATGTACT
*
7356504 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
7356532 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
7356560 TTTATACCCCTA
1 ATTATACCCCTA
7356572 GGGTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:7361287 original size:28 final size:28
Alignment explanation
Indices: 7361247--7361311 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
7361237 ATGTACTATT
*
7361247 ATACCCCTATGTATGCAAAATTACCATA
1 ATACCCCTATGTATGCAAAATGACCATA
* *
7361275 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATA
7361303 ATACCCCTA
1 ATACCCCTA
7361312 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATA
Found at i:7361475 original size:27 final size:27
Alignment explanation
Indices: 7361417--7361506 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
7361407 AGGAAGCGTC
7361417 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
7361445 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
7361472 CTGGTGGCACTGCCACAAAATATCTATAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
7361501 CTGGTG
1 CTGGTG
7361507 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:7361517 original size:29 final size:28
Alignment explanation
Indices: 7361427--7361517 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
7361417 CTGGTGGCTA
* * * *
7361427 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTATTCTGGTGACAC
* * *
7361455 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACAC
*
7361482 TGCCACAAAATATCTATATCTGGTGACTC
1 TGCCACAAAATATCTAT-TCTGGTGACAC
*
7361511 TGTCACA
1 TGCCACA
7361518 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 24 0.45
28 14 0.26
29 15 0.28
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTATTCTGGTGACAC
Found at i:7361525 original size:55 final size:56
Alignment explanation
Indices: 7361417--7361531 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
7361407 AGGAAGCGTC
* * *
7361417 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * *
7361472 CTGGTGGC-ACTGCCACAAAATATCTATATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
7361528 CTGG
1 CTGG
7361532 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:7362626 original size:11 final size:10
Alignment explanation
Indices: 7362598--7362631 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7362588 AGCCTGTAAG
7362598 TATTCTGAAT
1 TATTCTGAAT
*
7362608 TTTTCTGAAT
1 TATTCTGAAT
7362618 ATATTCTGAAT
1 -TATTCTGAAT
7362629 TAT
1 TAT
7362632 CTATCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:7364823 original size:75 final size:75
Alignment explanation
Indices: 7364695--7364844 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 75
7364685 GTTGGATAGG
*
7364695 GGCTTTATTAGGCCAAGTGTGTCTCCATGGGGAGCACCGGTGCTATTCGTGAAGAAGAAGGATGG
1 GGCTTTATTAGGCCAAGTGTGTCTCCATAGGGAGCACCGGTGCTATTCGTGAAGAAGAAGGATGG
7364760 GACGATGCGC
66 GACGATGCGC
7364770 GGCTTTATTAGGCCAAGTGTGTCTCCATAGGGAGCACCGGTGCTATTTC-TGAAGAAGAAGGATG
1 GGCTTTATTAGGCCAAGTGTGTCTCCATAGGGAGCACCGGTGCTA-TTCGTGAAGAAGAAGGATG
7364834 GGACGATGCGC
65 GGACGATGCGC
7364845 ATGTGCATTG
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
75 70 0.96
76 3 0.04
ACGTcount: A:0.23, C:0.19, G:0.35, T:0.23
Consensus pattern (75 bp):
GGCTTTATTAGGCCAAGTGTGTCTCCATAGGGAGCACCGGTGCTATTCGTGAAGAAGAAGGATGG
GACGATGCGC
Found at i:7367599 original size:5 final size:5
Alignment explanation
Indices: 7367582--7367620 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
7367572 CCATTCTTCC
* * *
7367582 TTCTT TTCCT TTCTT TTCTT TTCTT TCCTT TTTTT TTCT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TTCT
7367621 CCATCTATCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
TTCTT
Found at i:7374846 original size:41 final size:41
Alignment explanation
Indices: 7374800--7374879 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
7374790 GATCACTCTG
* *
7374800 TCCCTCACTTCTTCTAATTGGTTTTGGTAGGATTAGTATTT
1 TCCCTCACTTCTTCTAATCGATTTTGGTAGGATTAGTATTT
7374841 TCCCTCACTTCTTCTAATCGATTTTGGTAGGATTAGTAT
1 TCCCTCACTTCTTCTAATCGATTTTGGTAGGATTAGTAT
7374880 CGAATCCCAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (41 bp):
TCCCTCACTTCTTCTAATCGATTTTGGTAGGATTAGTATTT
Found at i:7375565 original size:28 final size:29
Alignment explanation
Indices: 7375507--7375568 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 29
7375497 GAAAGCATGA
* *
7375507 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGACC
*
7375536 ATATGAATGAGA-TTGGGCCTAGTGGACC
1 ATATGAATGAGATTTGGGCCTAATGGACC
7375564 ATATG
1 ATATG
7375569 CATGTATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGACC
Found at i:7377266 original size:43 final size:43
Alignment explanation
Indices: 7377219--7377305 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
7377209 TTCGATAATT
*
7377219 TTCCTTTAGTACGGGTTTTTACTTACCTTGGCCCGTTAGAAAA
1 TTCCTTTAGTACGAGTTTTTACTTACCTTGGCCCGTTAGAAAA
* * * *
7377262 TTCCTTTATTATGAGTTTTTACTTACCTTTGCCCGTTAGCAAA
1 TTCCTTTAGTACGAGTTTTTACTTACCTTGGCCCGTTAGAAAA
7377305 T
1 T
7377306 CCCCGTTAGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.44
Consensus pattern (43 bp):
TTCCTTTAGTACGAGTTTTTACTTACCTTGGCCCGTTAGAAAA
Found at i:7377581 original size:28 final size:28
Alignment explanation
Indices: 7377549--7377628 Score: 101
Period size: 28 Copynumber: 2.8 Consensus size: 28
7377539 CATATATGCT
7377549 TATGGCCCACTAGGCCCAATCTA-AT-TCA
1 TATGGCCCACTAGGCCCAATC-ACATCT-A
*
7377577 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
*
7377606 TAAGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
7377629 TTTTACAGTC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
28 23 0.50
29 22 0.48
30 1 0.02
ACGTcount: A:0.30, C:0.34, G:0.15, T:0.21
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:7381553 original size:29 final size:28
Alignment explanation
Indices: 7381494--7381573 Score: 115
Period size: 29 Copynumber: 2.8 Consensus size: 28
7381484 CATACATGCT
* * *
7381494 TATGGCCTACTAGGCCCAATCTCATTTA
1 TATGGCCCACTAGGCCCAATCACATCTA
*
7381522 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
7381551 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
7381574 TTTTACAGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 21 0.46
29 25 0.54
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:7384654 original size:40 final size:40
Alignment explanation
Indices: 7384552--7384767 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
7384542 TGGATGATAA
** * *
7384552 CCGGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
7384592 CCGAGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
7384631 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
*
7384671 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
7384711 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
7384750 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
7384768 TACTTGGTTG
Statistics
Matches: 160, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
38 17 0.11
39 43 0.27
40 98 0.61
41 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:7396646 original size:30 final size:30
Alignment explanation
Indices: 7396612--7396671 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
7396602 TGTACCTATC
*
7396612 TATTTTGATGGATGAAA-TTGAGATATTAAT
1 TATTTTGATGAAT-AAAGTTGAGATATTAAT
*
7396642 TATTTTGTTGAATAAATGTTGAGATATTAA
1 TATTTTGATGAATAAA-GTTGAGATATTAA
7396672 ATGAAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 11 0.42
31 12 0.46
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (30 bp):
TATTTTGATGAATAAAGTTGAGATATTAAT
Found at i:7396745 original size:33 final size:33
Alignment explanation
Indices: 7396706--7396780 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
7396696 TAAGTTGCCA
7396706 AATAAGACCATAG-TCGGGCTATGGCA-ATCGAAT
1 AATAAGACCATAGCT-GGGCTATGGCATA-CGAAT
*
7396739 AATAAGACCATAGCTGGGTTATGGCATACGAAT
1 AATAAGACCATAGCTGGGCTATGGCATACGAAT
*
7396772 GA-AAGACCA
1 AATAAGACCA
7396781 CGACAAGGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
32 7 0.18
33 29 0.76
34 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (33 bp):
AATAAGACCATAGCTGGGCTATGGCATACGAAT
Found at i:7403250 original size:30 final size:30
Alignment explanation
Indices: 7403216--7403275 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
7403206 TGTACCTATC
*
7403216 TATTTTGATGGATGAAA-TTGAGATATTAAT
1 TATTTTGATGAAT-AAAGTTGAGATATTAAT
*
7403246 TATTTTGTTGAATAAATGTTGAGATATTAA
1 TATTTTGATGAATAAA-GTTGAGATATTAA
7403276 ATGAAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 11 0.42
31 12 0.46
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (30 bp):
TATTTTGATGAATAAAGTTGAGATATTAAT
Found at i:7403349 original size:33 final size:33
Alignment explanation
Indices: 7403310--7403384 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
7403300 TAAGTTGCCA
7403310 AATAAGACCATAG-TCGGGCTATGGCA-ATCGAAT
1 AATAAGACCATAGCT-GGGCTATGGCATA-CGAAT
*
7403343 AATAAGACCATAGCTGGGTTATGGCATACGAAT
1 AATAAGACCATAGCTGGGCTATGGCATACGAAT
*
7403376 GA-AAGACCA
1 AATAAGACCA
7403385 CGACAAGGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
32 7 0.18
33 29 0.76
34 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (33 bp):
AATAAGACCATAGCTGGGCTATGGCATACGAAT
Found at i:7409835 original size:21 final size:21
Alignment explanation
Indices: 7409811--7409879 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 21
7409801 GTGATTGAAC
7409811 TCATTAAGTTATGGTCTGAGT
1 TCATTAAGTTATGGTCTGAGT
* * **
7409832 TCATGATA-TATGTGGCATCTGAAC
1 TCATTA-AGT-TATGG--TCTGAGT
7409856 TCATTAAGTTATGGTCTGAGT
1 TCATTAAGTTATGGTCTGAGT
7409877 TCA
1 TCA
7409880 CGATGTATGT
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
21 14 0.40
22 5 0.14
23 5 0.14
24 11 0.31
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (21 bp):
TCATTAAGTTATGGTCTGAGT
Found at i:7411390 original size:31 final size:31
Alignment explanation
Indices: 7411346--7411421 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
7411336 GTCCAAAAGT
* *
7411346 CACACAGGCGTGTGTGACCACACGGCCTACC
1 CACACGGGCGTGTGTGACCACACAGCCTACC
*
7411377 CATACGGGCGTGTGTGACCACACAGCCTACC
1 CACACGGGCGTGTGTGACCACACAGCCTACC
*
7411408 CACATGGGCGTGTG
1 CACACGGGCGTGTG
7411422 ACTGTCCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.16
Consensus pattern (31 bp):
CACACGGGCGTGTGTGACCACACAGCCTACC
Found at i:7417553 original size:40 final size:40
Alignment explanation
Indices: 7417502--7417818 Score: 553
Period size: 40 Copynumber: 7.9 Consensus size: 40
7417492 ATAACCGCAA
* * * *
7417502 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
7417542 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
7417582 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
7417622 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
7417662 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
7417702 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
7417742 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
7417782 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
7417819 ATGCTCATGC
Statistics
Matches: 263, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 263 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:7427649 original size:31 final size:31
Alignment explanation
Indices: 7427611--7427676 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
7427601 CCTTTGCATA
*
7427611 TTTCATATTTCATAACACTCGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
7427642 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
7427673 TTTC
1 TTTC
7427677 TGTACACGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:7427932 original size:24 final size:24
Alignment explanation
Indices: 7427868--7428008 Score: 200
Period size: 23 Copynumber: 6.0 Consensus size: 24
7427858 GCTTTATCAT
*
7427868 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
7427893 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
7427916 ATAATTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
7427940 ATAACTGGGGCATAAGCCC-TTGA
1 ATAACTGGGGCATAAGCCCTTTTA
*
7427963 ATAACTGGCGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
7427986 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
7428009 GCACTTCCTC
Statistics
Matches: 106, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
23 59 0.56
24 39 0.37
25 8 0.08
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:7427966 original size:47 final size:47
Alignment explanation
Indices: 7427882--7428006 Score: 191
Period size: 47 Copynumber: 2.7 Consensus size: 47
7427872 CTGGAGGCCT
* * *
7427882 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAATTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCC-TTGAATAACTGGCGCATA
7427930 AGCCCTTTTAATAACTGGGGCATAAGCCCTTGAATAACTGGCGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTGAATAACTGGCGCATA
7427977 AGCCC-TTTAATAACTGGGGCATAAGCCCTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTT
7428007 TTGCACTTCC
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
46 25 0.34
47 38 0.52
48 10 0.14
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTGAATAACTGGCGCATA
Found at i:7428124 original size:20 final size:20
Alignment explanation
Indices: 7428058--7428116 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
7428048 TTATGAATAC
7428058 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
7428078 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
7428098 TTCATGTGCATATCATACA
1 ATCATGTGCATATCATACA
7428117 GACCATGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:7430992 original size:43 final size:43
Alignment explanation
Indices: 7430929--7431091 Score: 179
Period size: 43 Copynumber: 3.8 Consensus size: 43
7430919 AGCTCGCACA
* * * *
7430929 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCTCA-TATTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAGTA-CG
* * *
7430971 ATGCCAATGTCCCAGACATGGTCTTACATGAAAT-TGATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAGT-ACG
* * * *
7431014 GTGCCAATGTCCCAGACATGGTCATACATGTAATCACAGTACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAGTACG
*
7431057 ATGCCAATGTCCCATACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
7431092 ACATCTCGGT
Statistics
Matches: 101, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 7 0.07
43 91 0.90
44 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAGTACG
Found at i:7438001 original size:42 final size:42
Alignment explanation
Indices: 7437954--7438034 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
7437944 TGACCTGAAT
7437954 GTGTGTCACACACAACTGAGACACATGCCTATGTCTCTGACA
1 GTGTGTCACACACAACTGAGACACATGCCTATGTCTCTGACA
* * *
7437996 GTGTGTCACACTCGACTGAGACACATGCCTGTGTCTCTG
1 GTGTGTCACACACAACTGAGACACATGCCTATGTCTCTG
7438035 CCCATGTGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.26
Consensus pattern (42 bp):
GTGTGTCACACACAACTGAGACACATGCCTATGTCTCTGACA
Found at i:7445937 original size:13 final size:14
Alignment explanation
Indices: 7445912--7445952 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
7445902 AAATAAGATA
7445912 AATAAATATAAAAGT
1 AATAAATA-AAAAGT
*
7445927 GA-AAATAAAAA-T
1 AATAAATAAAAAGT
7445939 AATAAATAAAAAGT
1 AATAAATAAAAAGT
7445953 TTTTAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.09
13 13 0.59
14 6 0.27
15 1 0.05
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (14 bp):
AATAAATAAAAAGT
Found at i:7450986 original size:19 final size:19
Alignment explanation
Indices: 7450949--7450986 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
7450939 ACCTGTCAGA
*
7450949 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
7450968 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
7450987 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:7454297 original size:47 final size:46
Alignment explanation
Indices: 7454246--7454378 Score: 178
Period size: 46 Copynumber: 2.9 Consensus size: 46
7454236 GAATTATGAG
*
7454246 GCATCCGAACTCGTTGAGTTGCATTCCGAGTTCACTTATGGATGCAA
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAA
* * *
7454293 GCATCCAAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATGCAA
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAA
* * *
7454339 ACA-CCTGAGCTCGTTGAGTTGCGTTCTGAGTTCATTATGG
1 GCATCC-GAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
7454379 GTGAGATTAT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
45 2 0.03
46 43 0.57
47 30 0.40
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAA
Found at i:7479594 original size:306 final size:306
Alignment explanation
Indices: 7479031--7479642 Score: 1136
Period size: 306 Copynumber: 2.0 Consensus size: 306
7479021 TTTATTTATT
7479031 GTTTTATATTTTTAATTTTTATTAAAACTACTTTTTGTTTTTTATTTTTTTATTATTAGACTTTA
1 GTTTTATATTTTTAATTTTTATTAAAACTACTTTTTGTTTTTTATTTTTTTATTATTAGACTTTA
7479096 GAATTTTTTTTTTTTTTAATCATCAATTTCAGTTTTTTCTTTATGAGTAATTATTCTTCCTAATA
66 GAATTTTTTTTTTTTTTAATCATCAATTTCAGTTTTTTCTTTATGAGTAATTATTCTTCCTAATA
7479161 TCCCCTAAAAACTTCCTTATTTTATCACAGTTATATAGAGCTCCTAAGCTCATCATCGCATAGGA
131 TCCCCTAAAAACTTCCTTATTTTATCACAGTTATATAGAGCTCCTAAGCTCATCATCGCATAGGA
* * * *
7479226 ACTAAAAACTCCACCAGGAACAGTTCTCCATGACTACCATGTCCTGATCAACTACTACCATAGCT
196 ACTAAAAACTCCACCAGGAACAGTTCTCCACGACTACCATGTCCTAATCAACCACGACCATAGCT
7479291 ACCACTAGATATAATATTCTTTTGGCGCAGGACTTATGGACTAATG
261 ACCACTAGATATAATATTCTTTTGGCGCAGGACTTATGGACTAATG
7479337 GTTTTATATTTTTAATTTTTATTAAAACTACTTTTTGTTTTTTATTTTTTTATTATTAGACTTTA
1 GTTTTATATTTTTAATTTTTATTAAAACTACTTTTTGTTTTTTATTTTTTTATTATTAGACTTTA
7479402 GAATTTTTTTTTTTTTTAATCATCAATTTCAGTTTTTTCTTTATGAGTAATTATTCTTCCTAATA
66 GAATTTTTTTTTTTTTTAATCATCAATTTCAGTTTTTTCTTTATGAGTAATTATTCTTCCTAATA
7479467 TCCCCTAAAAACTTCCTTATTTTATCACAGTTATATAGAGCTCCTAAGCTCATCATCGCATAGGA
131 TCCCCTAAAAACTTCCTTATTTTATCACAGTTATATAGAGCTCCTAAGCTCATCATCGCATAGGA
* * * *
7479532 ACTAAAAACTCCACCGGGGAA-GGTTCTCCACGACTGCCATGTCCTAATCGACCACGACCATAGC
196 ACTAAAAACTCCACC-AGGAACAGTTCTCCACGACTACCATGTCCTAATCAACCACGACCATAGC
7479596 TACCACTAGATATAATATTCTTTTGGCGCAGGACTTATGGACTAATG
260 TACCACTAGATATAATATTCTTTTGGCGCAGGACTTATGGACTAATG
7479643 AACCTCTACC
Statistics
Matches: 297, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
306 293 0.99
307 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.43
Consensus pattern (306 bp):
GTTTTATATTTTTAATTTTTATTAAAACTACTTTTTGTTTTTTATTTTTTTATTATTAGACTTTA
GAATTTTTTTTTTTTTTAATCATCAATTTCAGTTTTTTCTTTATGAGTAATTATTCTTCCTAATA
TCCCCTAAAAACTTCCTTATTTTATCACAGTTATATAGAGCTCCTAAGCTCATCATCGCATAGGA
ACTAAAAACTCCACCAGGAACAGTTCTCCACGACTACCATGTCCTAATCAACCACGACCATAGCT
ACCACTAGATATAATATTCTTTTGGCGCAGGACTTATGGACTAATG
Found at i:7494281 original size:33 final size:33
Alignment explanation
Indices: 7494239--7494327 Score: 142
Period size: 33 Copynumber: 2.7 Consensus size: 33
7494229 TTTCAATTAG
7494239 GATTTAGCCTGGACTGTTAATCCTAACTGACTA
1 GATTTAGCCTGGACTGTTAATCCTAACTGACTA
* * *
7494272 GATTTAGCCTAGACTGGTAATCCTAACTGACTG
1 GATTTAGCCTGGACTGTTAATCCTAACTGACTA
*
7494305 GATTTATCCTGGACTGTTAATCC
1 GATTTAGCCTGGACTGTTAATCC
7494328 AGAATAAACT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (33 bp):
GATTTAGCCTGGACTGTTAATCCTAACTGACTA
Found at i:7508380 original size:49 final size:50
Alignment explanation
Indices: 7508104--7508400 Score: 235
Period size: 50 Copynumber: 5.9 Consensus size: 50
7508094 TGGGAGAACG
* * *** *
7508104 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G-CTTAGGTCA
* * * *
7508156 CGTGTGTAGTACTAAGTGTAGGCTACTAAGTGTACCAGATAG-TTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GCTTAGGTCA
* * * ** *
7508206 CAGGTGTAGTACTAAGTGCAGGCTA-T-CATGCATACCCGACAACTTCA-ATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTG--TACCAGA-TGCTT-AGGTCA
* * * * *
7508257 CGTGTGCAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGTTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGCTTAGGTCA
* * *
7508307 CATGTGTAGTACTAGGTGCAGGCTACTACGTGTACCAGATTCTT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGCTTAGGTCA
* * * *
7508356 CATGTGTTGTACTAAGTGCTGGCTACTATGCGTACCAGATAGCTT
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GCTT
7508401 CGGTTACAAG
Statistics
Matches: 193, Mismatches: 43, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
48 2 0.01
49 40 0.21
50 81 0.42
51 31 0.16
52 36 0.19
53 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGCTTAGGTCA
Found at i:7508621 original size:15 final size:16
Alignment explanation
Indices: 7508591--7508622 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7508581 GAATGGAGTA
7508591 AGTGAAATTATGTAAT
1 AGTGAAATTATGTAAT
7508607 AGTGAAATT-TGTAAT
1 AGTGAAATTATGTAAT
7508622 A
1 A
7508623 ATACAGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (16 bp):
AGTGAAATTATGTAAT
Found at i:7510778 original size:27 final size:27
Alignment explanation
Indices: 7510742--7510837 Score: 70
Period size: 27 Copynumber: 3.6 Consensus size: 27
7510732 CAGCGACAGT
* *
7510742 AATATAATTGGCACATAGCTATGGGTA
1 AATATGATTGGCACATAGCTATAGGTA
* * * *
7510769 AATATGATTGACAAAGAG-TCATCA-ATA
1 AATATGATTGGCACATAGCT-AT-AGGTA
* * *
7510796 AATATGATAGGCACATAGCCACAGGTA
1 AATATGATTGGCACATAGCTATAGGTA
*
7510823 AATACGATTGGCACA
1 AATATGATTGGCACA
7510838 AAACCATAAT
Statistics
Matches: 50, Mismatches: 15, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.24
Consensus pattern (27 bp):
AATATGATTGGCACATAGCTATAGGTA
Found at i:7510866 original size:22 final size:22
Alignment explanation
Indices: 7510841--7510890 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
7510831 TGGCACAAAA
7510841 CCATAATCAAGATAGCACAGAG
1 CCATAATCAAGATAGCACAGAG
* * * * *
7510863 CCATATTTAGGCTGGCACAGAG
1 CCATAATCAAGATAGCACAGAG
7510885 CCATAA
1 CCATAA
7510891 ACAGATTAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (22 bp):
CCATAATCAAGATAGCACAGAG
Found at i:7511162 original size:14 final size:14
Alignment explanation
Indices: 7511140--7511173 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7511130 AAAAGCATGC
7511140 CAGTCATACAACCA
1 CAGTCATACAACCA
* *
7511154 CAGTTATACAATCA
1 CAGTCATACAACCA
7511168 CAGTCA
1 CAGTCA
7511174 AATCAATCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.29, G:0.09, T:0.21
Consensus pattern (14 bp):
CAGTCATACAACCA
Found at i:7511260 original size:27 final size:26
Alignment explanation
Indices: 7511229--7511319 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 26
7511219 CAAAACAGTC
* *
7511229 ATTTTACACTACAAAGGTATTTCGATA
1 ATTTTACA-AACAAGGGTATTTCGATA
**
7511256 ATTTTACAAACTGGGGGTATTTCGATA
1 ATTTTACAAAC-AAGGGTATTTCGATA
*
7511283 ATTTTACAAATTAAGGGTATTTCGATA
1 ATTTTACAAA-CAAGGGTATTTCGATA
7511310 ATTTTACAAA
1 ATTTTACAAA
7511320 TCGGAGTCTT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.38
Consensus pattern (26 bp):
ATTTTACAAACAAGGGTATTTCGATA
Found at i:7511320 original size:27 final size:27
Alignment explanation
Indices: 7511244--7511320 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
7511234 ACACTACAAA
* **
7511244 GGTATTTCGATAATTTTACAAACTGGG
1 GGTATTTCGATAATTTTACAAATTAAG
7511271 GGTATTTCGATAATTTTACAAATTAAG
1 GGTATTTCGATAATTTTACAAATTAAG
7511298 GGTATTTCGATAATTTTACAAAT
1 GGTATTTCGATAATTTTACAAAT
7511321 CGGAGTCTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATTAAG
Found at i:7513638 original size:26 final size:26
Alignment explanation
Indices: 7513609--7513784 Score: 104
Period size: 27 Copynumber: 6.6 Consensus size: 26
7513599 TTAGTTTACC
*
7513609 AAATTACTAAAATACCCCCAGTTGTA
1 AAATTACCAAAATACCCCCAGTTGTA
* * *
7513635 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCCCCAG-TTGTA
* * * *
7513662 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATA-CCCCCAGTTGTA
* * *
7513689 AAATTACCGAAATACCCTCAATT-TACA
1 AAATTACCAAAATACCCCCAGTTGT--A
** * **
7513716 AAATTACTGAAATACCCTC-GATCAATA
1 AAATTACCAAAATACCCCCAG-T-TGTA
**
7513743 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCCAG-TTGTA
*
7513770 ACATTACCAAAATAC
1 AAATTACCAAAATAC
7513785 ACTTGGTTTA
Statistics
Matches: 115, Mismatches: 27, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
25 1 0.01
26 23 0.20
27 85 0.74
28 5 0.04
29 1 0.01
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCCCAGTTGTA
Found at i:7513705 original size:54 final size:53
Alignment explanation
Indices: 7513609--7513813 Score: 169
Period size: 54 Copynumber: 3.8 Consensus size: 53
7513599 TTAGTTTACC
* * * * *
7513609 AAATTACTAAAATACCCCCAGTTGTAAAATTACC-AAAGTACCCCCGGTTTATA
1 AAATTACCAAAATACCTCGATTTATAAAATTACCGAAA-TACCCCCGGTTTATA
* * * ** *
7513662 AAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTACA
1 AAATTACCAAAATA-CCTCGATTTATAAAATTACCGAAATACCCCCGGTTTATA
** ** * * *
7513716 AAATTACTGAAATACCCTCGATCAATAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCTCGATTTATAAAATTACCGAAATACCCCCGGTTTATA
* * * *
7513770 ACATTACCAAAATACACTTGGTTTACAAAATTACCGAAATACCC
1 AAATTACCAAAATAC-CTCGATTTATAAAATTACCGAAATACCC
7513814 TTGTAGGGTA
Statistics
Matches: 118, Mismatches: 31, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 13 0.11
54 102 0.86
55 3 0.03
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (53 bp):
AAATTACCAAAATACCTCGATTTATAAAATTACCGAAATACCCCCGGTTTATA
Found at i:7513744 original size:81 final size:81
Alignment explanation
Indices: 7513659--7513814 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
7513649 CCCCCGGTTT
* * * *
7513659 ATAAAATTACCCAAATA-TCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTACAAAATTAC
1 ATAAAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACACTCAATTTACAAAATTAC
*
7513723 TGAAATACCCTCGATCA
65 CGAAATACCCTCGATCA
* * ***
7513740 ATAAAATTACCAAAATACCCCTGGTTTGTAACATTACCAAAATACACTTGGTTTACAAAATTACC
1 ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACACTCAATTTACAAAATTACC
7513805 GAAATACCCT
66 GAAATACCCT
7513815 TGTAGGGTAG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
81 61 0.95
82 3 0.05
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (81 bp):
ATAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACACTCAATTTACAAAATTACC
GAAATACCCTCGATCA
Found at i:7513816 original size:27 final size:27
Alignment explanation
Indices: 7513633--7513814 Score: 161
Period size: 27 Copynumber: 6.7 Consensus size: 27
7513623 CCCCCAGTTG
* *
7513633 TAAAATTACC-AAAGTACCCCCGGTTTA
1 TAAAATTACCGAAA-TACCCTCGATTTA
* * *
7513660 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTA
*
7513687 TAAAATTACCGAAATACCCTCAATTTA
1 TAAAATTACCGAAATACCCTCGATTTA
* * **
7513714 CAAAATTACTGAAATACCCTCGATCAA
1 TAAAATTACCGAAATACCCTCGATTTA
* * *
7513741 TAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTACCGAAATACCCTC-GATTTA
* * * * *
7513768 TAACATTACCAAAATACACTTGGTTTA
1 TAAAATTACCGAAATACCCTCGATTTA
*
7513795 CAAAATTACCGAAATACCCT
1 TAAAATTACCGAAATACCCT
7513815 TGTAGGGTAG
Statistics
Matches: 124, Mismatches: 28, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 120 0.97
28 3 0.02
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.28
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTA
Found at i:7513828 original size:27 final size:27
Alignment explanation
Indices: 7513798--7514019 Score: 266
Period size: 27 Copynumber: 8.3 Consensus size: 27
7513788 TGGTTTACAA
*
7513798 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
7513825 AATTATCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
7513852 AATTATCGAAATACCTCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
7513879 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
7513906 AATTATCGCAATACCCATGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
7513933 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
7513960 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
7513987 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
7514013 AATTACC
1 AATTACC
7514020 ATTTTGCCCC
Statistics
Matches: 166, Mismatches: 29, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
26 16 0.10
27 150 0.90
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:7514498 original size:22 final size:22
Alignment explanation
Indices: 7514446--7514510 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
7514436 TTAAAGCCTT
* *
7514446 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
7514468 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
7514490 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
7514511 ATGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:7514757 original size:27 final size:26
Alignment explanation
Indices: 7514669--7514770 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
7514659 ATTCTGTTAA
* *
7514669 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
7514696 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
7514723 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* * **
7514750 ATGACTCTATCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
7514771 ATAACTGAGT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.14
27 50 0.76
28 7 0.11
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:7514940 original size:31 final size:31
Alignment explanation
Indices: 7514902--7515012 Score: 168
Period size: 31 Copynumber: 3.6 Consensus size: 31
7514892 TTGCATTCAC
*
7514902 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
7514933 ATTCTGATTTTGATTCTGTTACCTGATACTA
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
7514964 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
7514995 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
7515013 ATTCTGATAA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:7515029 original size:18 final size:18
Alignment explanation
Indices: 7514989--7515041 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
7514979 CTGTCACCTA
**
7514989 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATAATG
7515007 ATTCTGATTCTGATAATG
1 ATTCTGATTCTGATAATG
* *
7515025 TTTCTTATTCTG-TAATG
1 ATTCTGATTCTGATAATG
7515042 GGTTAAAGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 5 0.16
18 26 0.84
ACGTcount: A:0.21, C:0.13, G:0.15, T:0.51
Consensus pattern (18 bp):
ATTCTGATTCTGATAATG
Found at i:7515035 original size:6 final size:6
Alignment explanation
Indices: 7514902--7515020 Score: 100
Period size: 6 Copynumber: 19.3 Consensus size: 6
7514892 TTGCATTCAC
* * *
7514902 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
7514951 -TTACCTG ATACTA ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
7515001 ATTCTG ATTCTG ATTCTG AT
1 ATTCTG ATTCTG ATTCTG AT
7515021 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 14, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
5 5 0.06
6 74 0.82
7 8 0.09
8 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:7521424 original size:12 final size:14
Alignment explanation
Indices: 7521409--7521441 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7521399 GTGAGAACAC
7521409 ATGTGTA-G-TACT
1 ATGTGTAGGTTACT
7521421 ATGTGTAGGTTACT
1 ATGTGTAGGTTACT
7521435 ATGTGTA
1 ATGTGTA
7521442 CCAGATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 1 0.05
14 11 0.58
ACGTcount: A:0.24, C:0.06, G:0.27, T:0.42
Consensus pattern (14 bp):
ATGTGTAGGTTACT
Found at i:7521485 original size:50 final size:50
Alignment explanation
Indices: 7521406--7521649 Score: 240
Period size: 50 Copynumber: 4.9 Consensus size: 50
7521396 ATTGTGAGAA
* * *
7521406 CACATGTGTAGTACTATGTGTAGGTTACTATGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * * * *
7521456 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTTA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TA-GTTAGGT
* * ** *
7521507 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * * * *
7521557 CACGTGTGTAGTACTAAGTGCAGGGTACAATGTGTACCGGATTGTT-GGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * **
7521606 CGCATGTGTAGTACTAAGTGCTGGCTACTATGCATACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
7521650 CTCTAGTTAC
Statistics
Matches: 154, Mismatches: 37, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
49 40 0.26
50 75 0.49
51 36 0.23
52 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
Found at i:7521594 original size:101 final size:101
Alignment explanation
Indices: 7521410--7521594 Score: 262
Period size: 101 Copynumber: 1.8 Consensus size: 101
7521400 TGAGAACACA
* * * * *
7521410 TGTGTAGTACTATGTGTAGGTTACTATGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGT
*
7521475 GCAGGCTACTATGCGTACCCGACAACTTTAATCACG
66 GCAGGCTACAATGCGTACCCGACAACTTTAATCACG
** * *
7521511 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGT
* *
7521576 GCAGGGTACAATGTGTACC
66 GCAGGCTACAATGCGTACC
7521595 GGATTGTTGG
Statistics
Matches: 72, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGT
GCAGGCTACAATGCGTACCCGACAACTTTAATCACG
Found at i:7521868 original size:16 final size:15
Alignment explanation
Indices: 7521847--7521876 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7521837 GAATGAAGTA
7521847 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
7521863 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
7521877 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Done.