Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 214 of 313
Found at i:65840390 original size:12 final size:11
Alignment explanation
Indices: 65840313--65840507 Score: 91
Period size: 11 Copynumber: 18.9 Consensus size: 11
65840303 ATTTTTTTAA
65840313 TTTTAAAATAT
1 TTTTAAAATAT
65840324 TTTTAAAATATT
1 TTTTAAAATA-T
**
65840336 TTTTTTAAT-T
1 TTTTAAAATAT
* *
65840346 TTTT---TTAA
1 TTTTAAAATAT
*
65840354 TTTTAAGATAT
1 TTTTAAAATAT
*
65840365 TTTAAAAATAT
1 TTTTAAAATAT
65840376 TTTTAAAATACT
1 TTTTAAAATA-T
**
65840388 TTTTTTAAT-T
1 TTTTAAAATAT
65840398 TTTT---A-A-
1 TTTTAAAATAT
65840404 TTTTAAAATAT
1 TTTTAAAATAT
65840415 TTTTAAAATATT
1 TTTTAAAATA-T
**
65840427 TTTTTTAAT-T
1 TTTTAAAATAT
* *
65840437 TTTT---TTAA
1 TTTTAAAATAT
*
65840445 TTTTAAGATAT
1 TTTTAAAATAT
*
65840456 TTTAAAAATAT
1 TTTTAAAATAT
65840467 TTTTAAAATACT
1 TTTTAAAATA-T
**
65840479 TTTTTTAAT-T
1 TTTTAAAATAT
65840489 TTTT-AAA-AT
1 TTTTAAAATAT
65840498 TTTTAAAATA
1 TTTTAAAATA
65840508 AAAATGGGCC
Statistics
Matches: 140, Mismatches: 23, Indels: 42
0.68 0.11 0.20
Matches are distributed among these distances:
6 4 0.03
7 3 0.02
8 8 0.06
9 8 0.06
10 24 0.17
11 61 0.44
12 32 0.23
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:65840412 original size:91 final size:91
Alignment explanation
Indices: 65840289--65840494 Score: 387
Period size: 91 Copynumber: 2.3 Consensus size: 91
65840279 CGAATATAAT
65840289 AAATA-TTTATTTTAATTTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTAATTTTTTTTA
1 AAATACTTT-TTTTAA-TTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTAATTTTTTTTA
65840353 ATTTTAAGATATTTTAAAAATATTTTTA
64 ATTTTAAGATATTTTAAAAATATTTTTA
65840381 AAATACTTTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTAATTTTTTTTAAT
1 AAATACTTTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTAATTTTTTTTAAT
65840446 TTTAAGATATTTTAAAAATATTTTTA
66 TTTAAGATATTTTAAAAATATTTTTA
65840472 AAATACTTTTTTTAATTTTTTAA
1 AAATACTTTTTTTAATTTTTTAA
65840495 AATTTTTAAA
Statistics
Matches: 113, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
91 99 0.88
92 11 0.10
93 3 0.03
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (91 bp):
AAATACTTTTTTTAATTTTTTAATTTTAAAATATTTTTAAAATATTTTTTTTAATTTTTTTTAAT
TTTAAGATATTTTAAAAATATTTTTA
Found at i:65840428 original size:28 final size:28
Alignment explanation
Indices: 65840376--65840429 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
65840366 TTAAAAATAT
**
65840376 TTTTAAAATACTTTTTTTAATTTTTTAA
1 TTTTAAAATACTTTTTAAAATTTTTTAA
65840404 TTTTAAAATA-TTTTTAAAATATTTTT
1 TTTTAAAATACTTTTTAAAAT-TTTTT
65840430 TTTAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (28 bp):
TTTTAAAATACTTTTTAAAATTTTTTAA
Found at i:65840440 original size:9 final size:10
Alignment explanation
Indices: 65840424--65840448 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
65840414 TTTTTAAAAT
65840424 ATTTTTTTTA
1 ATTTTTTTTA
65840434 ATTTTTTTTA
1 ATTTTTTTTA
65840444 ATTTT
1 ATTTT
65840449 AAGATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
ATTTTTTTTA
Found at i:65847933 original size:20 final size:21
Alignment explanation
Indices: 65847903--65847957 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
65847893 GAGTATATAT
*
65847903 ATACATA-TATATTTTACATA
1 ATACATATTATATTGTACATA
65847923 ATAC-TATTATATATGTACATA
1 ATACATATTATAT-TGTACATA
* *
65847944 TTGCATATTATATT
1 ATACATATTATATT
65847958 ATTTTCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 2 0.07
20 9 0.31
21 10 0.34
22 8 0.28
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (21 bp):
ATACATATTATATTGTACATA
Found at i:65847936 original size:22 final size:22
Alignment explanation
Indices: 65847908--65847971 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
65847898 TATATATACA
65847908 TATATATTTTACATAATACTAT
1 TATATATTTTACATAATACTAT
* * *
65847930 TATATA-TGTACATATTGCATAT
1 TATATATTTTACATAATAC-TAT
*
65847952 TATATTATTTT-CATTATACT
1 TATA-TATTTTACATAATACT
65847972 TACATACATG
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
21 9 0.28
22 14 0.44
23 7 0.22
24 2 0.06
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (22 bp):
TATATATTTTACATAATACTAT
Found at i:65848290 original size:53 final size:53
Alignment explanation
Indices: 65848229--65848332 Score: 199
Period size: 53 Copynumber: 2.0 Consensus size: 53
65848219 ATAATGTACG
*
65848229 AAATTTTTATTGTTATGCTTGTTTGTATTTGTTCATTAATTGCCTATTGTTTA
1 AAATTTTTATTGTTATGCTTGCTTGTATTTGTTCATTAATTGCCTATTGTTTA
65848282 AAATTTTTATTGTTATGCTTGCTTGTATTTGTTCATTAATTGCCTATTGTT
1 AAATTTTTATTGTTATGCTTGCTTGTATTTGTTCATTAATTGCCTATTGTT
65848333 CATGGGTGTG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.58
Consensus pattern (53 bp):
AAATTTTTATTGTTATGCTTGCTTGTATTTGTTCATTAATTGCCTATTGTTTA
Found at i:65852204 original size:20 final size:21
Alignment explanation
Indices: 65852174--65852228 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
65852164 GAGTATATAT
*
65852174 ATACATA-TATATTTTACATA
1 ATACATATTATATTGTACATA
65852194 ATAC-TATTATATATGTACATA
1 ATACATATTATAT-TGTACATA
* *
65852215 TTTCATATTATATT
1 ATACATATTATATT
65852229 ATTTTCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 2 0.07
20 9 0.31
21 10 0.34
22 8 0.28
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (21 bp):
ATACATATTATATTGTACATA
Found at i:65852763 original size:37 final size:37
Alignment explanation
Indices: 65852713--65852786 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
65852703 AAATTGAGCC
*
65852713 CTAACGTATTGGGTTCCAATTTTTCTCGTTGAATCTA
1 CTAACGTATTGGGTTCCAATTTTCCTCGTTGAATCTA
65852750 CTAACGTATTGGGTTCCAATTTTCCTCGTTGAATCTA
1 CTAACGTATTGGGTTCCAATTTTCCTCGTTGAATCTA
65852787 AATAATCGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (37 bp):
CTAACGTATTGGGTTCCAATTTTCCTCGTTGAATCTA
Found at i:65853760 original size:18 final size:18
Alignment explanation
Indices: 65853737--65853773 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
65853727 GCCCAGGGAC
65853737 TAAACTGAAAAAGTTTAA
1 TAAACTGAAAAAGTTTAA
65853755 TAAACTGAAAAAGTTTAA
1 TAAACTGAAAAAGTTTAA
65853773 T
1 T
65853774 CATTATAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.11, T:0.30
Consensus pattern (18 bp):
TAAACTGAAAAAGTTTAA
Found at i:65854103 original size:5 final size:5
Alignment explanation
Indices: 65854093--65854119 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
65854083 AAAAGAAAGA
65854093 AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AA
65854120 GCAGATTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:65855107 original size:24 final size:24
Alignment explanation
Indices: 65855062--65855107 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
65855052 GTTCAATTTA
**
65855062 GTAATTTTATTATTATTTTTTAAT
1 GTAATTTTATTATTATCATTTAAT
65855086 GTAATTATTATT-TTATCATTTA
1 GTAATT-TTATTATTATCATTTA
65855108 TTTATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (24 bp):
GTAATTTTATTATTATCATTTAAT
Found at i:65855113 original size:19 final size:18
Alignment explanation
Indices: 65855067--65855109 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
65855057 ATTTAGTAAT
*
65855067 TTTATTATTATTTTTTAA
1 TTTATTATTATTTTATAA
* *
65855085 TGTAATTATTATTTTATCA
1 T-TTATTATTATTTTATAA
65855104 TTTATT
1 TTTATT
65855110 TATTTTTTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTATTATTATTTTATAA
Found at i:65867475 original size:44 final size:43
Alignment explanation
Indices: 65867409--65868015 Score: 317
Period size: 44 Copynumber: 14.0 Consensus size: 43
65867399 TCGCATCTAG
*
65867409 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAGAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCC-ATAA
* * * * *
65867453 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCAT-AA
* * ** * * * *
65867497 TCTTATCTCTCTGAAGTTACAG-AAAGCATA-TCGCA-TC-TAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAG-AGCCATAA
* * * *
65867537 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTA-AGCAAGCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCA-TAA
* * * ** * *
65867580 GTCCTATCTTCCTGAAG-TGAAGCAGA-CTGA--AGATGACA-AA
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGA-GCCATAA
* *
65867620 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCC-ATAA
* * * * *
65867664 TCCTATCTCCATGAAGTTGCAGTGGAGCAGATTAAAACCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCATA-A
* * * * *
65867708 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-TCGCA-TC-TAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAG-AGCCATAA
* *
65867748 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-CA-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAG--AGCCATAA
* *
65867792 TCTTATC-CTCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGGCA-AA
1 TCTTATCTC-CCTGAAGTTGCAGT-GGAGCAGA-T-TAGA-GCCATAA
* * * * *
65867837 CCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAGCCGATAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCC-ATAA
* * *
65867881 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-CA-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAG--AGCCATAA
* *
65867925 TCTTATC-CTCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGGCA-AA
1 TCTTATCTC-CCTGAAGTTGCAGT-GGAGCAGA-T-TAGA-GCCATAA
* * *
65867970 CCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCC-ATAA
65868014 TC
1 TC
65868016 AACATTGCAG
Statistics
Matches: 433, Mismatches: 85, Indels: 90
0.71 0.14 0.15
Matches are distributed among these distances:
39 14 0.03
40 50 0.12
41 18 0.04
42 16 0.04
43 38 0.09
44 226 0.52
45 66 0.15
46 3 0.01
47 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCATAA
Found at i:65867715 original size:127 final size:127
Alignment explanation
Indices: 65867540--65867778 Score: 274
Period size: 127 Copynumber: 1.9 Consensus size: 127
65867530 CATCTAGTCT
* * *
65867540 TATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGCAAGCAAGTCCTATCT-TCCTGAAG-TGAAGC
1 TATCTCCATGAAGTTGCAGTGGAGCAGACTAA-CAACCAAGTCCTATCTCT-CTGAAGTTGAAG-
65867603 AGACTGAAGAT-G-A-CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAAT
63 AGA--GAAGATCGCATCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAAT
65867665 CC
126 CC
* * * *
65867667 TATCTCCATGAAGTTGCAGTGGAGCAGATTAA-AACCTTAGATCTTATCTCTCTGAAGTTGCAGA
1 TATCTCCATGAAGTTGCAGTGGAGCAGACTAACAACC-AAG-TCCTATCTCTCTGAAGTTGAAGA
* * * *
65867731 GAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
64 GAGAAGATCGCATCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGA
65867779 CTAAGTAAGC
Statistics
Matches: 94, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
125 8 0.09
126 3 0.03
127 46 0.49
128 37 0.39
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (127 bp):
TATCTCCATGAAGTTGCAGTGGAGCAGACTAACAACCAAGTCCTATCTCTCTGAAGTTGAAGAGA
GAAGATCGCATCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCC
Found at i:65867773 original size:211 final size:215
Alignment explanation
Indices: 65867409--65867911 Score: 816
Period size: 211 Copynumber: 2.3 Consensus size: 215
65867399 TCGCATCTAG
* * *
65867409 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAGAGCCGATAATCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCA
* *
65867474 GTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGTTACAGAAAGCATATCGCATCTAGTC
66 GTGGAGCAGATTAAAACCTTAGATCTTATCTCTCTGAAGTTACAGAAAGCAGATCGCATCTAGTC
* *
65867539 TTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGCAAGCAAGTCCTATCTTCCTGAAG-TG-A-A
131 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAGTCCTATCCTCCTGAAGTTGCAGA
65867601 -GCAGACTGAAGATGACAAA
196 GGCAGACTGAAGATGACAAA
*
65867620 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCATGAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCA
* *
65867685 GTGGAGCAGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTC
66 GTGGAGCAGATTAAAACCTTAGATCTTATCTCTCTGAAGTTACAGAAAGCAGATCGCATCTAGTC
* *
65867750 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGT
131 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAGTCCTATCCTCCTGAAGTTGCAG-
*
65867815 AGGGCAGACTGAAGATGGCAAA
195 A-GGCAGACTGAAGATGACAAA
* * *
65867837 CCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAGCCGATAGTCCTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCA
65867902 GTGGAGCAGA
66 GTGGAGCAGA
65867912 CTAAGTAAGC
Statistics
Matches: 269, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
211 176 0.65
212 2 0.01
213 1 0.00
215 1 0.00
217 89 0.33
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (215 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCA
GTGGAGCAGATTAAAACCTTAGATCTTATCTCTCTGAAGTTACAGAAAGCAGATCGCATCTAGTC
TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAGTCCTATCCTCCTGAAGTTGCAGA
GGCAGACTGAAGATGACAAA
Found at i:65867796 original size:84 final size:85
Alignment explanation
Indices: 65867667--65867822 Score: 212
Period size: 84 Copynumber: 1.8 Consensus size: 85
65867657 CCGATAATCC
* *
65867667 TATCTCCATGAAGTTGCAGTGGAGCAGATTAAAACCTTAGATCTTAT-CTCTCTGAAGTTGCAG-
1 TATCTCCATGAAGTTGCAGTGGAGCAGACTAAAACCTAAGATCTTATCCTC-CTGAAGTTGCAGT
65867730 AGAGCAGATCGCATCTAGTCT
65 AGAGCAGATCGCATCTAGTCT
* *
65867751 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-AAG-TCTTATCCTCCTGAAGTTGCAG
1 TATCTCCATGAAGTTGCAGTGGAGCAGACTAA--AACCTAAGATCTTATCCTCCTGAAGTTGCAG
*
65867814 TAGGGCAGA
64 TAGAGCAGA
65867823 CTGAAGATGG
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
84 48 0.76
85 12 0.19
86 3 0.05
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (85 bp):
TATCTCCATGAAGTTGCAGTGGAGCAGACTAAAACCTAAGATCTTATCCTCCTGAAGTTGCAGTA
GAGCAGATCGCATCTAGTCT
Found at i:65867894 original size:89 final size:88
Alignment explanation
Indices: 65867749--65868000 Score: 218
Period size: 89 Copynumber: 2.8 Consensus size: 88
65867739 CGCATCTAGT
* *
65867749 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAG-AAGCAAGTCCTATCCTCCTGAAGTTGCAG
65867814 TAGG-GCAGACTGAAGATGGCAAAC
65 T-GGAGCAGACTGAAGATGGCAAAC
* *
65867838 CTTATCTCCCTGAAGTTACAGTGGAGCAG-GTTA-AAGCCGATAGTCCTAT-CTCCCTGAAGTTG
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGAAG-C-A-AGTCCTATCCT-CCTGAAGTTG
* **
65867900 CAGTGGAGCAGACT-AAG-TAAGCAAGT
62 CAGTGGAGCAGACTGAAGAT-GGCAAAC
* * *
65867926 CTTATC-CTCCTGAAGTTGCAGTAGG-GCAGACTGAAGATGGCAA-ACCTTAT-CTCCCTGAAGT
1 CTTATCTC-CCTGAAGTTACAGT-GGAGCAGACT-AAGA-AGCAAGTCC-TATCCT-CCTGAAGT
*
65867987 TACAGTGGAGCAGA
60 TGCAGTGGAGCAGA
65868001 TTAAAGCCGA
Statistics
Matches: 137, Mismatches: 13, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
86 3 0.02
87 3 0.02
88 39 0.28
89 87 0.64
90 2 0.01
91 2 0.01
92 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (88 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGAAGCAAGTCCTATCCTCCTGAAGTTGCAGT
GGAGCAGACTGAAGATGGCAAAC
Found at i:65867902 original size:133 final size:133
Alignment explanation
Indices: 65867745--65868012 Score: 518
Period size: 133 Copynumber: 2.0 Consensus size: 133
65867735 AGATCGCATC
*
65867745 TAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTT
1 TAGTCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTT
*
65867810 GCAGTAGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAGC
66 GCAGTAGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGC
65867875 CGA
131 CGA
65867878 TAGTCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTT
1 TAGTCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTT
65867943 GCAGTAGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGC
66 GCAGTAGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGC
65868008 CGA
131 CGA
65868011 TA
1 TA
65868013 ATCAACATTG
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 133 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (133 bp):
TAGTCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTT
GCAGTAGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGC
CGA
Found at i:65868393 original size:5 final size:5
Alignment explanation
Indices: 65868385--65868421 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
65868375 AAAGGAAAGA
65868385 AAATC AAATC AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AAATC AAATC AA
65868422 GCAGATTTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:65872911 original size:27 final size:26
Alignment explanation
Indices: 65872880--65873016 Score: 139
Period size: 27 Copynumber: 5.1 Consensus size: 26
65872870 ACACGTGAAA
65872880 AAAGGAACGCCTTTGTGGCGCAATATG
1 AAAGGAACGCCTTTGTGGCG-AATATG
*
65872907 AAAGGAAAGCCTTTGTGGCGAATTATG
1 AAAGGAACGCCTTTGTGGCGAA-TATG
* * *
65872934 AAAGGAACACCTTTATGGTGCAATATG
1 AAAGGAACGCCTTTGTGGCG-AATATG
* * * *
65872961 AAAGTAATGTCTTTGTGGCGAAATACG
1 AAAGGAACGCCTTTGTGGCG-AATATG
* *
65872988 AAAGGAATGCTTTTGTGGCGAATCATG
1 AAAGGAACGCCTTTGTGGCGAAT-ATG
65873015 AA
1 AA
65873017 GGGATAGCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.06
27 83 0.92
28 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (26 bp):
AAAGGAACGCCTTTGTGGCGAATATG
Found at i:65873016 original size:54 final size:54
Alignment explanation
Indices: 65872880--65873026 Score: 170
Period size: 54 Copynumber: 2.7 Consensus size: 54
65872870 ACACGTGAAA
* *
65872880 AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAATTATG
1 AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
* * * * * *
65872934 AAAGGAACACCTTTATGGTGCAATATGAAAGTAATGTCTTTGTGGCGAAATACG
1 AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
* * * *
65872988 AAAGGAATGCTTTTGTGGCG-AATCATGAAGGGATAGCCT
1 AAAGGAACGCCTTTGTGGCGCAAT-ATGAAAGGAAAGCCT
65873027 CTATGGTGAA
Statistics
Matches: 74, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
53 3 0.04
54 71 0.96
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26
Consensus pattern (54 bp):
AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
Found at i:65889684 original size:40 final size:40
Alignment explanation
Indices: 65889647--65889777 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
65889637 GCTACTCGTT
*
65889647 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
65889687 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
65889727 CAAATGCCTTTGGG--TTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
65889765 CAAATGCCTTCGG
1 CAAATGCCTTCGG
65889778 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 33 0.41
40 46 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:65891583 original size:20 final size:20
Alignment explanation
Indices: 65891558--65891596 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
65891548 CTGTCACAAC
65891558 TGATCAATGATGCTTTGATT
1 TGATCAATGATGCTTTGATT
*
65891578 TGATCAATGATGTTTTGAT
1 TGATCAATGATGCTTTGAT
65891597 ACAAACGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (20 bp):
TGATCAATGATGCTTTGATT
Found at i:65902704 original size:42 final size:42
Alignment explanation
Indices: 65902637--65902723 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
65902627 CGTGTGTGTC
*
65902637 TCCGGCCTCTATCTCTTGACCAAAGCACTGATGAGTGAGGGA
1 TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
* * *
65902679 TCCGGTCTCTATCTCTTAACTAAAGCACTGATGAGTGGGGGA
1 TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
65902721 TCC
1 TCC
65902724 AATTTAGTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.26
Consensus pattern (42 bp):
TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
Found at i:65909375 original size:65 final size:65
Alignment explanation
Indices: 65909300--65909434 Score: 252
Period size: 65 Copynumber: 2.1 Consensus size: 65
65909290 TGTCAAAATT
65909300 TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTACAAAGAA
1 TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTACAAAGAA
*
65909365 TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTATTATTACAAAGAA
1 TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTACAAAGAA
*
65909430 AAATT
1 TAATT
65909435 CTATGGTTCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 68 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.42
Consensus pattern (65 bp):
TAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTACAAAGAA
Found at i:65910553 original size:109 final size:110
Alignment explanation
Indices: 65910405--65910667 Score: 379
Period size: 109 Copynumber: 2.4 Consensus size: 110
65910395 ATCGAAACCA
* * *
65910405 AGCACCTTAGGGCACG--TTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTT
1 AGCACCTTAGGGCATGTTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTT
* * * * *
65910468 AAAAGGATATTAAGTCATTTGGTTGAACGAGAAAAATCGACACTC
66 AAAAGAATATTAAGCCATTTGGTTGAACGAGAAAAAACAACACCC
* * * *
65910513 AGCGCCTTAGGGCGTG-TTTTCTCAAATTTTCAAACGCAAAACATTGCCTTATTTTAAAATTTTT
1 AGCACCTTAGGGCATGTTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTT
65910577 AAAAGAATATTAAGCCATTTGGTTGAACGAGAAAAAACAACACCC
66 AAAAGAATATTAAGCCATTTGGTTGAACGAGAAAAAACAACACCC
* *
65910622 AGCACCTTAGGGTATGTTTTTCTCAAATTTCCAAACGCTAAATATT
1 AGCACCTTAGGGCATGTTTTTCTCAAATTTCCAAACGCAAAATATT
65910668 ACCTCGATTA
Statistics
Matches: 135, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
108 13 0.10
109 96 0.71
110 26 0.19
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.32
Consensus pattern (110 bp):
AGCACCTTAGGGCATGTTTTTCTCAAATTTCCAAACGCAAAATATTGCCTTATTTTAAAATTTTT
AAAAGAATATTAAGCCATTTGGTTGAACGAGAAAAAACAACACCC
Found at i:65911002 original size:16 final size:17
Alignment explanation
Indices: 65910983--65911024 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
65910973 TATATAGATA
65910983 TACATATATAAA-TATG
1 TACATATATAAAGTATG
* *
65910999 TACATATAAAAAGTATT
1 TACATATATAAAGTATG
65911016 TA-ATATATA
1 TACATATATA
65911025 TATTAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (17 bp):
TACATATATAAAGTATG
Found at i:65911194 original size:3 final size:3
Alignment explanation
Indices: 65911188--65911220 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
65911178 GATGATGATG
*
65911188 ATA ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
65911221 TTAAAAGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:65912013 original size:8 final size:8
Alignment explanation
Indices: 65912000--65912034 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
65911990 GAGTTGACGC
65912000 GGCAAGTG
1 GGCAAGTG
65912008 GGCAAGTG
1 GGCAAGTG
65912016 GGCAAGTG
1 GGCAAGTG
*
65912024 GGCAAATG
1 GGCAAGTG
65912032 GGC
1 GGC
65912035 GGTGATGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.26, C:0.14, G:0.49, T:0.11
Consensus pattern (8 bp):
GGCAAGTG
Found at i:65913582 original size:68 final size:69
Alignment explanation
Indices: 65913501--65913634 Score: 189
Period size: 68 Copynumber: 2.0 Consensus size: 69
65913491 TTTTAGTAGT
* * * * * *
65913501 TTAATATTAAATTTAATTTAATACTTATCTTAAT-AGTATTTTATTAATTTAATATTGAAGTGAT
1 TTAATATTAAATTTAATCTAACACTTATCTTAATAAATATTATATTAATTTAATATTAAAATGAT
65913565 TATC
66 TATC
* *
65913569 TTAATATTAAATTTAATCTAACATTTATCTTGATAAATATTATATTAATTTAATATTAAAATGAT
1 TTAATATTAAATTTAATCTAACACTTATCTTAATAAATATTATATTAATTTAATATTAAAATGAT
65913634 T
66 T
65913635 TTTGTGAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
68 30 0.53
69 27 0.47
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (69 bp):
TTAATATTAAATTTAATCTAACACTTATCTTAATAAATATTATATTAATTTAATATTAAAATGAT
TATC
Found at i:65914783 original size:34 final size:34
Alignment explanation
Indices: 65914740--65914808 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
65914730 AGGTCCAATA
*
65914740 TGGGGTGTTACAAGAAGAATCTACTGTTTGTCCC
1 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
65914774 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
1 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
65914808 T
1 T
65914809 CCGCAGCATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (34 bp):
TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
Found at i:65915709 original size:19 final size:19
Alignment explanation
Indices: 65915685--65915746 Score: 61
Period size: 25 Copynumber: 2.9 Consensus size: 19
65915675 CTCTTGCTGG
65915685 TTCTTTGTTCCTCTACTGC
1 TTCTTTGTTCCTCTACTGC
65915704 TTCTTTGTTCTTCTTCCTCTACTGC
1 TTCTTTG------TTCCTCTACTGC
*
65915729 TTCTTTGTTCTTCTACTG
1 TTCTTTGTTCCTCTACTG
65915747 GTGCTAGTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
19 17 0.47
25 19 0.53
ACGTcount: A:0.05, C:0.29, G:0.10, T:0.56
Consensus pattern (19 bp):
TTCTTTGTTCCTCTACTGC
Found at i:65915720 original size:25 final size:25
Alignment explanation
Indices: 65915692--65915742 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
65915682 TGGTTCTTTG
65915692 TTCCTCTACTGCTTCTTTGTTCTTC
1 TTCCTCTACTGCTTCTTTGTTCTTC
65915717 TTCCTCTACTGCTTCTTTGTTCTTC
1 TTCCTCTACTGCTTCTTTGTTCTTC
65915742 T
1 T
65915743 ACTGGTGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.04, C:0.31, G:0.08, T:0.57
Consensus pattern (25 bp):
TTCCTCTACTGCTTCTTTGTTCTTC
Found at i:65915757 original size:25 final size:25
Alignment explanation
Indices: 65915729--65915801 Score: 137
Period size: 25 Copynumber: 2.9 Consensus size: 25
65915719 CCTCTACTGC
*
65915729 TTCTTTGTTCTTCTACTGGTGCTAG
1 TTCTTTGTTCTTCTGCTGGTGCTAG
65915754 TTCTTTGTTCTTCTGCTGGTGCTAG
1 TTCTTTGTTCTTCTGCTGGTGCTAG
65915779 TTCTTTGTTCTTCTGCTGGTGCT
1 TTCTTTGTTCTTCTGCTGGTGCT
65915802 TTGTTCCTCT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.04, C:0.21, G:0.22, T:0.53
Consensus pattern (25 bp):
TTCTTTGTTCTTCTGCTGGTGCTAG
Found at i:65915759 original size:50 final size:50
Alignment explanation
Indices: 65915704--65915801 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
65915694 CCTCTACTGC
65915704 TTCTTTGTTCTTCTTCCT-CTACT-GCTTCTTTGTTCTTCTACTGGTGCTAG
1 TTCTTTGTTCTTC-TCCTGCTACTAG-TTCTTTGTTCTTCTACTGGTGCTAG
* * * *
65915754 TTCTTTGTTCTTCTGCTGGTGCTAGTTCTTTGTTCTTCTGCTGGTGCT
1 TTCTTTGTTCTTCTCCTGCTACTAGTTCTTTGTTCTTCTACTGGTGCT
65915802 TTGTTCCTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
49 3 0.07
50 38 0.90
51 1 0.02
ACGTcount: A:0.04, C:0.23, G:0.18, T:0.54
Consensus pattern (50 bp):
TTCTTTGTTCTTCTCCTGCTACTAGTTCTTTGTTCTTCTACTGGTGCTAG
Found at i:65915814 original size:25 final size:25
Alignment explanation
Indices: 65915736--65915814 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 25
65915726 TGCTTCTTTG
* * *
65915736 TTCTTCTACTGGTGCTAGTTCTTTG
1 TTCTTCTGCTGGTGCTAGTTCTCTC
* *
65915761 TTCTTCTGCTGGTGCTAGTTCTTTG
1 TTCTTCTGCTGGTGCTAGTTCTCTC
*
65915786 TTCTTCTGCTGGTGCTTTGTTC-CTC
1 TTCTTCTGCTGGTGC-TAGTTCTCTC
65915811 TTCT
1 TTCT
65915815 CCACCACTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 44 0.90
26 5 0.10
ACGTcount: A:0.04, C:0.23, G:0.20, T:0.53
Consensus pattern (25 bp):
TTCTTCTGCTGGTGCTAGTTCTCTC
Found at i:65918870 original size:15 final size:15
Alignment explanation
Indices: 65918850--65918902 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
65918840 CAAACTATTT
65918850 TTAATTACATAAATA
1 TTAATTACATAAATA
*
65918865 TTAATTACA-AACT-
1 TTAATTACATAAATA
65918878 TATAATTACATAAATA
1 T-TAATTACATAAATA
65918894 TTAATTACA
1 TTAATTACA
65918903 AACTTGTGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 1 0.03
14 11 0.33
15 20 0.61
16 1 0.03
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAATTACATAAATA
Found at i:65918885 original size:14 final size:15
Alignment explanation
Indices: 65918833--65918907 Score: 66
Period size: 15 Copynumber: 4.9 Consensus size: 15
65918823 AATAATCATC
*
65918833 TTAATTACAAACTATTT
1 TTAATTACAAAC--TTA
*
65918850 TTAATTACATAA-ATA
1 TTAATTACA-AACTTA
65918865 TTAATTACAAACTTA
1 TTAATTACAAACTTA
*
65918880 -TAATTACATAA-ATA
1 TTAATTACA-AACTTA
65918894 TTAATTACAAACTT
1 TTAATTACAAACTT
65918908 GTGCCTATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
14 14 0.29
15 23 0.48
17 9 0.19
18 2 0.04
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAATTACAAACTTA
Found at i:65918892 original size:29 final size:29
Alignment explanation
Indices: 65918833--65918907 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 29
65918823 AATAATCATC
*
65918833 TTAATTACAAACTATTTTTAATTACATAAATA
1 TTAATTACAAAC---TTATAATTACATAAATA
65918865 TTAATTACAAACTTATAATTACATAAATA
1 TTAATTACAAACTTATAATTACATAAATA
65918894 TTAATTACAAACTT
1 TTAATTACAAACTT
65918908 GTGCCTATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
29 30 0.71
32 12 0.29
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (29 bp):
TTAATTACAAACTTATAATTACATAAATA
Found at i:65919807 original size:18 final size:18
Alignment explanation
Indices: 65919784--65919849 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
65919774 AAAATATGAG
65919784 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTT
*
65919802 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTT
65919820 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTT
*
65919838 AAATGATTTTCA
1 AAATGATGTTCA
65919850 AATTGATGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (18 bp):
AAATGATGTTCACATTTT
Found at i:65920427 original size:72 final size:72
Alignment explanation
Indices: 65920273--65920445 Score: 235
Period size: 72 Copynumber: 2.4 Consensus size: 72
65920263 AACAACAATG
* * *
65920273 CTAAACTT-GTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATATTCTACTT
1 CTAAA-TTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
65920337 ATTTATGT
65 ATTTATGT
* * *
65920345 GT-AATCTAGTTTTATTAAAAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
1 CTAAAT-TAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
*
65920409 ATTT-TTT
65 ATTTATGT
65920416 ACTAAATTAGTTTTATCAATAGTTGTTTAT
1 -CTAAATTAGTTTTATCAATAGTTGTTTAT
65920446 ATGTTATTTT
Statistics
Matches: 87, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
70 1 0.01
71 5 0.06
72 78 0.90
73 3 0.03
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.55
Consensus pattern (72 bp):
CTAAATTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
TTTATGT
Found at i:65922421 original size:13 final size:13
Alignment explanation
Indices: 65922400--65922463 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
65922390 ACACTCAAAA
65922400 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
65922413 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* * *
65922426 TTTTCCACAGCAG
1 TTTTCAAAAGCAC
*
65922439 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
65922452 TTTTCAAAAGCA
1 TTTTCAAAAGCA
65922464 ATGAAGAACT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:65925788 original size:17 final size:16
Alignment explanation
Indices: 65925751--65925781 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65925741 GATTGAATCA
*
65925751 AATTTTATTAATTTTG
1 AATTTTAATAATTTTG
65925767 AATTTTAATAATTTT
1 AATTTTAATAATTTT
65925782 TTAATTTGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
AATTTTAATAATTTTG
Found at i:65929335 original size:22 final size:22
Alignment explanation
Indices: 65929310--65929356 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
65929300 AGTGATCCAG
65929310 TTAAGTTCACCAACTACAACTC
1 TTAAGTTCACCAACTACAACTC
65929332 TTAAGTTCACCAACTACAACTC
1 TTAAGTTCACCAACTACAACTC
65929354 TTA
1 TTA
65929357 CACTGGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.30, G:0.04, T:0.30
Consensus pattern (22 bp):
TTAAGTTCACCAACTACAACTC
Found at i:65934097 original size:23 final size:22
Alignment explanation
Indices: 65934054--65934097 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
65934044 TTCTAAGTTG
65934054 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
65934077 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
65934098 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:65934192 original size:45 final size:45
Alignment explanation
Indices: 65934142--65934230 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
65934132 AAACGATACT
* * * *
65934142 CGGTGGATTCAGCATATAGCAACCACCTTATTAATAAATGATGTC
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGTC
*
65934187 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGT
65934231 TTGGTTCACA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGTC
Found at i:65934406 original size:50 final size:51
Alignment explanation
Indices: 65934241--65934427 Score: 202
Period size: 51 Copynumber: 3.7 Consensus size: 51
65934231 TTGGTTCACA
* *
65934241 TAGTAGCTTGCACATAGTACTACACATGTGACCATTATCATT-CGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TATCATTCCGGTACACG
** * * * * * *
65934292 TAGTATTCTGCACATAGTACTACACACGTGATCGA-AAC-TATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATATCAT-TCCGGTACACG
* *
65934343 TAGTAGCCTGCACATAGTACTACACATGCGA-CATATCATTCCGGTACATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATATCATTCCGGTACACG
*
65934393 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
65934428 CACTTTCACT
Statistics
Matches: 108, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
49 2 0.02
50 41 0.38
51 63 0.58
52 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATATCATTCCGGTACACG
Found at i:65934422 original size:101 final size:102
Alignment explanation
Indices: 65934239--65934423 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
65934229 GTTTGGTTCA
* * **
65934239 CATAGTAGCTTGCACATAGTACTACACATGTGACCATTATCATTCGATACACGTAGTATTCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTATCATTCGATACACGTAGTAGCCTGCA
65934304 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
66 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
* *
65934341 CATAGTAGCCTGCACATAGTACTACACATGCGA-CA-TATCATTCCGGTACATGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATTATCATT-CGATACACGTAGTAGCCTGC
65934404 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
65934424 CCATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 7 0.09
101 38 0.50
102 31 0.41
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATTATCATTCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAACTATCTGGTACG
Found at i:65941606 original size:20 final size:20
Alignment explanation
Indices: 65941557--65941594 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
65941547 AATGATGAAG
65941557 TTGAAGTATTAGTTGTTAAT
1 TTGAAGTATTAGTTGTTAAT
65941577 TTGAAGTATTAGTTGTTA
1 TTGAAGTATTAGTTGTTA
65941595 TTTATAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (20 bp):
TTGAAGTATTAGTTGTTAAT
Found at i:65944296 original size:11 final size:11
Alignment explanation
Indices: 65944280--65944305 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
65944270 ACATGGCTTG
65944280 AATTTTAGGGT
1 AATTTTAGGGT
65944291 AATTTTAGGGT
1 AATTTTAGGGT
65944302 AATT
1 AATT
65944306 AATAAAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (11 bp):
AATTTTAGGGT
Found at i:65954493 original size:19 final size:19
Alignment explanation
Indices: 65954469--65954506 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
65954459 ATAATAATAT
65954469 TAAAATAGAATTCTCAAAC
1 TAAAATAGAATTCTCAAAC
65954488 TAAAATAGAATTCTCAAAC
1 TAAAATAGAATTCTCAAAC
65954507 AACTCATCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (19 bp):
TAAAATAGAATTCTCAAAC
Found at i:65956025 original size:22 final size:20
Alignment explanation
Indices: 65955978--65956026 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
65955968 ATTAATAATT
*
65955978 TATAAAATTTAATTTGAATA
1 TATAAAATTTAATTTAAATA
65955998 TATAAAATTTATATTTTAAATA
1 TATAAAATTTA-A-TTTAAATA
*
65956020 TTTAAAA
1 TATAAAA
65956027 AATAATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 11 0.44
21 1 0.04
22 13 0.52
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TATAAAATTTAATTTAAATA
Found at i:65956368 original size:17 final size:16
Alignment explanation
Indices: 65956334--65956380 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 16
65956324 GAAAATTATT
65956334 TTTAAAAA-ATTTAAA
1 TTTAAAAATATTTAAA
*
65956349 TTTAAAAATATTATATA
1 TTTAAAAATATT-TAAA
65956366 TTTACAAACATATTT
1 TTTA-AAA-ATATTT
65956381 TAAAAAAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.30
16 3 0.11
17 7 0.26
18 4 0.15
19 5 0.19
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAAAAATATTTAAA
Found at i:65968931 original size:24 final size:24
Alignment explanation
Indices: 65968897--65968948 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
65968887 TTTCTAGAAG
*
65968897 ATTTAATATTTATTAGTATAATAT
1 ATTTAACATTTATTAGTATAATAT
65968921 ATTTAACATTTATTAGTATAATAT
1 ATTTAACATTTATTAGTATAATAT
65968945 ATTT
1 ATTT
65968949 GACACTGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (24 bp):
ATTTAACATTTATTAGTATAATAT
Found at i:65968959 original size:24 final size:24
Alignment explanation
Indices: 65968908--65968960 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
65968898 TTTAATATTT
* *
65968908 ATTAGTATAATATATTTAACATTT
1 ATTAGTATAATATATTTAACACTG
*
65968932 ATTAGTATAATATATTTGACACTG
1 ATTAGTATAATATATTTAACACTG
65968956 ATTAG
1 ATTAG
65968961 AATTAAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.45
Consensus pattern (24 bp):
ATTAGTATAATATATTTAACACTG
Found at i:65973338 original size:24 final size:24
Alignment explanation
Indices: 65973311--65973364 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
65973301 ATTTAGTATA
*
65973311 TATTAGTATAATATATTTAACATT
1 TATTAGCATAATATATTTAACATT
*
65973335 TATTAGCATAATATATTTAACGTT
1 TATTAGCATAATATATTTAACATT
*
65973359 GATTAG
1 TATTAG
65973365 AATTAGGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (24 bp):
TATTAGCATAATATATTTAACATT
Found at i:65978205 original size:21 final size:21
Alignment explanation
Indices: 65978179--65978225 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
65978169 CAGCCTAGAC
65978179 GTTATGACCGAATCTTGAGGA
1 GTTATGACCGAATCTTGAGGA
*
65978200 GTTATGGCCGAATCTTGAGGA
1 GTTATGACCGAATCTTGAGGA
65978221 GTTAT
1 GTTAT
65978226 AAAATCTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (21 bp):
GTTATGACCGAATCTTGAGGA
Found at i:65978857 original size:202 final size:200
Alignment explanation
Indices: 65978470--65978868 Score: 654
Period size: 202 Copynumber: 2.0 Consensus size: 200
65978460 AAGTATATCA
* **
65978470 AAAAGTCTAACAAAATAAACCAAAAATCGAAAAACAAGTCCAAAAGTACCAATTGTCTAAAAAGT
1 AAAAGTCTAACAAAATAAACCAAAAACCGAAAAACAAGTCCAAAAGTACCAACAGTCTAAAAAGT
* * *
65978535 CCATATTAAACAATAAGACTTAAAAACGATCTTATTATTGAGAATCCAACTCGAGCTTCCACACG
66 CCATATTAAACAATAAGACTTAAAAACCATCTTATTACTGAGAATCCAACTCGAGCTTCCACACA
* * ** * *
65978600 CTGTCCGATCCTAAGTTTGTTGATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAGCTCA
131 CCGTCCAATCCTAAGTTTACTAATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAACTCA
65978665 GTAAT
196 GTAAT
*
65978670 AAAAGTCTAACAAAATAAACCAAAAACCGAAAAACAAGTCCAAAAGTACCAACAGTTTAAAAAGT
1 AAAAGTCTAACAAAATAAACCAAAAACCGAAAAACAAGTCCAAAAGTACCAACAGTCTAAAAAGT
*
65978735 CCATATTAAACAATAAGACTATTAAAAACCATTTTATTACTGAGAATCCAACTCGAGCTTCCACA
66 CCATATTAAACAATAAGAC--TTAAAAACCATCTTATTACTGAGAATCCAACTCGAGCTTCCACA
65978800 CACCGTCCAATCCTAAGTTTACTAATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAACT
129 CACCGTCCAATCCTAAGTTTACTAATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAACT
65978865 CAGT
194 CAGT
65978869 GTGCAACTCT
Statistics
Matches: 183, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
200 80 0.44
202 103 0.56
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.24
Consensus pattern (200 bp):
AAAAGTCTAACAAAATAAACCAAAAACCGAAAAACAAGTCCAAAAGTACCAACAGTCTAAAAAGT
CCATATTAAACAATAAGACTTAAAAACCATCTTATTACTGAGAATCCAACTCGAGCTTCCACACA
CCGTCCAATCCTAAGTTTACTAATTACCTGAGAAGAAAAATAATTAGGTGGGCTTACAAAACTCA
GTAAT
Found at i:65986442 original size:14 final size:12
Alignment explanation
Indices: 65986406--65986453 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
65986396 CCCATGTAGC
65986406 AACAACAAAGAAA
1 AACAA-AAAGAAA
65986419 AACAAAAAGAAA
1 AACAAAAAGAAA
65986431 AATCAGAAAAGAAA
1 AA-CA-AAAAGAAA
*
65986445 AAGAAAAAG
1 AACAAAAAG
65986454 CATCAAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
12 14 0.44
13 8 0.25
14 10 0.31
ACGTcount: A:0.77, C:0.08, G:0.12, T:0.02
Consensus pattern (12 bp):
AACAAAAAGAAA
Found at i:65986461 original size:21 final size:19
Alignment explanation
Indices: 65986417--65986470 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 19
65986407 ACAACAAAGA
* *
65986417 AAAACAAAAAGAAAAATCAG
1 AAAA-AAAAAGAAAAAGCAC
65986437 AAAAGAAAAAGAAAAAGCATC
1 AAAA-AAAAAGAAAAAGCA-C
65986458 AAAAAAGAAAGAA
1 AAAAAA-AAAGAA
65986471 GATAAGGGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.76, C:0.07, G:0.13, T:0.04
Consensus pattern (19 bp):
AAAAAAAAAGAAAAAGCAC
Found at i:65994279 original size:88 final size:91
Alignment explanation
Indices: 65994079--65994285 Score: 224
Period size: 93 Copynumber: 2.3 Consensus size: 91
65994069 GATATATATA
* * * * ** *
65994079 TTGCAGGTTAAACTGCCAGATCAGATAATATTACGCAGCAAAGCTGAAGTATATTTAGTATAGTG
1 TTGCAGTTTAAACTACCAGATCAGATAATAATACGCAACAAAGCTGAAGTATATGCAGTACAGT-
*
65994144 GATTGCGGTAAACTGCTGTACAAATAGG
65 GATT-CGGTAAACAGCTGTACAAATAGG
*
65994172 TTGCAGTTTAAACTACCAGATCAGATAATAATACGCAACAAAGCTGACA-TATATGCGGTACAGT
1 TTGCAGTTTAAACTACCAGATCAGATAATAATACGCAACAAAGCTGA-AGTATATGCAGTACAGT
* * * *
65994236 -A-T-GGTAAACAGTTGTACCATTATG
65 GATTCGGTAAACAGCTGTACAAATAGG
* *
65994260 TTTCAGTTTAAACTTCCAGATCAGAT
1 TTGCAGTTTAAACTACCAGATCAGAT
65994286 CAGATCAGAT
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
88 41 0.42
90 1 0.01
91 1 0.01
93 54 0.55
94 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (91 bp):
TTGCAGTTTAAACTACCAGATCAGATAATAATACGCAACAAAGCTGAAGTATATGCAGTACAGTG
ATTCGGTAAACAGCTGTACAAATAGG
Found at i:65995482 original size:15 final size:14
Alignment explanation
Indices: 65995458--65995498 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
65995448 CTATTTTACA
65995458 AAGAGAAAAAGAAG
1 AAGAGAAAAAGAAG
65995472 AAGAGGAAAAAGAAG
1 AAGA-GAAAAAGAAG
*
65995487 AA-AAAAAAAGAA
1 AAGAGAAAAAGAA
65995499 CTTGCTACTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 8 0.32
14 5 0.20
15 12 0.48
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (14 bp):
AAGAGAAAAAGAAG
Found at i:65996379 original size:22 final size:21
Alignment explanation
Indices: 65996354--65996396 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
65996344 TACAATCCAA
*
65996354 AACCGAATAATAGTAATAAAAT
1 AACCGAAAAATA-TAATAAAAT
* *
65996376 AACCTAAAAATATAATTAAAT
1 AACCGAAAAATATAATAAAAT
65996397 TAAAATAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (21 bp):
AACCGAAAAATATAATAAAAT
Found at i:65996927 original size:14 final size:14
Alignment explanation
Indices: 65996910--65996941 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
65996900 ATGTAATAAG
65996910 TCATAGTAAATATA
1 TCATAGTAAATATA
*
65996924 TCATAGTAAATATT
1 TCATAGTAAATATA
65996938 TCAT
1 TCAT
65996942 GCATTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (14 bp):
TCATAGTAAATATA
Found at i:66006528 original size:22 final size:21
Alignment explanation
Indices: 66006503--66006543 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
66006493 CTATTAGTTC
*
66006503 TAAAATCATTTTTAGAGACTTG
1 TAAAATCATATTTAG-GACTTG
*
66006525 TAAACTCATATTTAGGACT
1 TAAAATCATATTTAGGACT
66006544 GTATGCATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (21 bp):
TAAAATCATATTTAGGACTTG
Found at i:66012788 original size:44 final size:44
Alignment explanation
Indices: 66012740--66012936 Score: 131
Period size: 44 Copynumber: 4.5 Consensus size: 44
66012730 TAATCCGCTT
*
66012740 CACTGCAACTTCAGGAAGATAGGATTAATTTTTTTCGTCTGCTC
1 CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
* * * *
66012784 CACTGCAACTTCTGGGAGATAAGACTGAA-----TGCGATCTGCTC
1 CACTGCAACTTCAGGAAGATAAGA-TTAATTTTTTTCG-TCTGCTC
* * ** ** *
66012825 TACTGCAACTTCA-GAGAGATAAGATCT-GTGGTTTTAATCCGCTC
1 CACTGCAACTTCAGGA-AGATAAGAT-TAATTTTTTTCGTCTGCTC
* * * * * *
66012869 CACTGCAACTTTAGGGAGATAGGATTGATTTCTTTCGTCTACTC
1 CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
66012913 CACTGCAACTTCAAGG-AGATAAGA
1 CACTGCAACTTC-AGGAAGATAAGA
66012937 CTGGATGTGA
Statistics
Matches: 113, Mismatches: 28, Indels: 24
0.68 0.17 0.15
Matches are distributed among these distances:
40 5 0.04
41 26 0.23
43 1 0.01
44 73 0.65
45 8 0.07
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
Found at i:66012869 original size:85 final size:85
Alignment explanation
Indices: 66012780--66013671 Score: 615
Period size: 85 Copynumber: 10.3 Consensus size: 85
66012770 TTTTTCGTCT
* * *
66012780 GCTCCACTGCAACTTCTGGGAGATAAGACTGAATGCGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
66012845 AAGATCTGTGGTTTTAATCC
66 AAGATCTGTGGTTTTAATCC
* * * * * * *
66012865 GCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTTCG-TCTACTCCACTGCAACTTCA-AG
1 GCTCCACTGCAACTTCAGGGAGATAAGACTG---TATGT-GATCTGCTCTACTGCAACTTCAGA-
* * * *
66012928 GAGATAAGA-C--TGGATGTGATCT
61 GAGATAAGATCTGTGGTTTTAATCC
* * ** * * * * * **
66012950 GCTCTACTGTAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA-CTGT--ATGTGATCTGCTCTACTGCAACTTCAGAGA
* * ** *
66013015 GATAGGAT-TGAT-TTCTTTCGTCT
63 GATAAGATCTG-TGGT-TTTAATCC
66013038 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
66013103 AAGATCTGTGGTTTTAATCC
66 AAGATCTGTGGTTTTAATCC
66013123 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
66013188 AAGATCTGTGGTTTTAATCC
66 AAGATCTGTGGTTTTAATCC
* * * *
66013208 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTACTCTACCGTAACTTCAGAGATAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
*
66013273 AAAATCTGTGGTTTTAATCC
66 AAGATCTGTGGTTTTAATCC
* * * * ** * *
66013293 GCTCCACTGCAACTTCAGGAAGATAGGA-T-TATCGGCTTCAATCTGCTCCACTATAACCTCAGG
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGTAT--G--T-GATCTGCTCTACTGCAACTTCAGA
* ** ** *
66013356 GAGATAAGATTTGTCATCTTCGATCT
61 GAGATAAGATCTGTGGT-TTTAATCC
* * * * * * **
66013382 GCCCCACTGCAACTTTAGGGGGTTAAGACT-TGATTACTCAGTCTGCTCCGCTGCAACTTCAGAG
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGT-A-T-GTGA-TCTGCTCTACTGCAACTTCAGAG
* *** ** *
66013446 AGAAAAGATCTGAAATTCTTCGGTCT
62 AGATAAGATCTGTGGTT-TT-AATCC
* * * * * * * * *
66013472 ACTCCACTGTAACCTCAGGGAGATAAGACCTG-GTGCGATCTACTCTGCTGTAACTTCAAAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA-CTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGA
**
66013536 TAAGATCCT-TTATTTTAATCC
65 TAAGAT-CTGTGGTTTTAATCC
* * * * * * ** * *
66013557 GCTCCACTGTAACTTTAGAGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAA-TCTCAGGG
1 GCTCCACTGCAACTTCAGGGAGATAAGACT-GTAT-GT-GATCTGCTCTACTGCAACT-TCAGAG
* * * *
66013620 AGATAAGATCTCTGGCTTCAATCT
62 AGATAAGATCTGTGGTTTTAATCC
* *
66013644 GCTCCACTGTAACCTCAGGGAGATAAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA
66013672 TCTGAAATTC
Statistics
Matches: 637, Mismatches: 132, Indels: 74
0.76 0.16 0.09
Matches are distributed among these distances:
83 5 0.01
84 2 0.00
85 339 0.53
86 11 0.02
87 96 0.15
88 92 0.14
89 61 0.10
90 27 0.04
91 3 0.00
92 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (85 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
AAGATCTGTGGTTTTAATCC
Found at i:66012914 original size:129 final size:129
Alignment explanation
Indices: 66012683--66013147 Score: 696
Period size: 129 Copynumber: 3.6 Consensus size: 129
66012673 AAAAAGTCTG
* * * * * ** ** *
66012683 ATGCGATATGCTATATTGGAACTTCAGATAGATAAGATCCATCATTTTAATCCGCTTCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* * * *
66012748 CTTCAGGAAGATAGGATTAATTTTTTTCGTCTGCTCCACTGCAACTTCTGGGAGATAAGACTGA
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
66012812 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* * * *
66012877 CTTTAGGGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAACTTCAAGGAGATAAGACTGG
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
* * * **
66012941 ATGTGATCTGCTCTACTGTAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* *
66013006 CTTCAGAGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGT
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
*
66013070 ATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
66013135 CTTCAGGGAGATA
66 CTTCAGGGAGATA
66013148 AGACTGTATG
Statistics
Matches: 303, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 303 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA
Found at i:66013217 original size:129 final size:129
Alignment explanation
Indices: 66012702--66013239 Score: 637
Period size: 129 Copynumber: 4.2 Consensus size: 129
66012692 GCTATATTGG
* ** ** * *
66012702 AACTTCAGATAGATAAGATCCATCATTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTA
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT-
* * * * * *
66012767 ATTTTTTTCGTCTGCTCCACTGCAACTTCTGGGAGATAAGAC--TGAATGCGATCTGCTCTACTG
65 -GTTCTTTCGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGGATGTGATCTGCTCTACTG
66012830 C
129 C
*
66012831 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTG
*
66012896 ATTTCTTTCGTCTACTCCACTGCAACTTCA-AGGAGATAAGAC--TGGATGTGATCTGCTCTACT
66 --TTCTTTCGTCTGCTCCACTGCAACTTCAGA-GAGATAAGACTGTGGATGTGATCTGCTCTACT
*
66012958 GT
128 GC
* ** *
66012960 AACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGAGAGATAGGATTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTG
*
66013025 ATTTCTTTCGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGT--ATGTGATCTGCTCTACTG
66 --TTCTTTCGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGGATGTGATCTGCTCTACTG
66013088 C
129 C
* *
66013089 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTG
* * * * * * * *
66013154 -TATGT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTG
66 TTCTTTCG-TCTGCTCCACTGCAACTTCAGAGAGATAAGA-CTGTGGATGTGATCTGCTCTACTG
66013217 C
129 C
*
66013218 AACTTCAGGGAGATAAGA-CTGT
1 AACTTCAGAGAGATAAGATCTGT
66013240 ATGTGATCTA
Statistics
Matches: 359, Mismatches: 40, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
125 1 0.00
126 32 0.09
127 4 0.01
128 4 0.01
129 317 0.88
131 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (129 bp):
AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTG
TTCTTTCGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTGTGGATGTGATCTGCTCTACTGC
Found at i:66013224 original size:258 final size:255
Alignment explanation
Indices: 66012727--66013239 Score: 710
Period size: 258 Copynumber: 2.0 Consensus size: 255
66012717 AGATCCATCA
* * *
66012727 TTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTAATTTTTTTCGTCTGCTCCACTGCAA
1 TTTTAATCCGCTCCACTACAACTTCAGGAAGATAGGATTAATTTCTTTCGTCTGCTCCACTGCAA
*
66012792 CTTCTGGGAGATAAGACTGAATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
66 CTTCAGGGAGATAAGACTGAATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
* * * * *
66012857 TTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTTCGTCTACTCCACTGCAAC
131 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTG--TTATGTCGTCTACTCCACTGCAAC
* * * *
66012922 TTCAAGGAGATAAGACTGGATGTGATCTGCTCTACTGTAACTTCAAAGAGATAAGATCTGTGG
194 TTCAAGGAGATAAGACTGGATGTAATCCGCTCCACTGCAACTTCAAAGAGATAAGA-CTGTGG
* *
66012985 TTTTAATCCGCTCCACTATAACTTCA-GAGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCA
1 TTTTAATCCGCTCCACTACAACTTCAGGA-AGATAGGATTAATTTCTTTCGTCTGCTCCACTGCA
* *
66013049 ACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
65 ACTTCAGGGAGATAAGACTGAATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGG
* *
66013114 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTG-TATGT-GATCTGCTCTACTGCAAC
130 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGTTATGTCG-TCTACTCCACTGCAAC
* * **
66013177 TTC-AGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGT
194 TTCAAG-GAGATAAGA-C--TGGATGTAATCCGCTCCACTGCAACTTCAAAGAGATAAGACTGT
66013240 ATGTGATCTA
Statistics
Matches: 226, Mismatches: 23, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
254 3 0.01
255 29 0.13
256 1 0.00
257 6 0.03
258 187 0.83
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (255 bp):
TTTTAATCCGCTCCACTACAACTTCAGGAAGATAGGATTAATTTCTTTCGTCTGCTCCACTGCAA
CTTCAGGGAGATAAGACTGAATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTGTTATGTCGTCTACTCCACTGCAACTT
CAAGGAGATAAGACTGGATGTAATCCGCTCCACTGCAACTTCAAAGAGATAAGACTGTGG
Found at i:66013654 original size:44 final size:43
Alignment explanation
Indices: 66013031--66014628 Score: 588
Period size: 44 Copynumber: 36.9 Consensus size: 43
66013021 ATTGATTTCT
* * * *
66013031 TTCG-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGT-A
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * * * * *
66013071 TGT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
1 T-TCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GC
** * * * * *
66013115 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-CTGT-A
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * * * * *
66013156 TGT-GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
1 T-TCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GC
** * * * * *
66013200 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA-CTGT-A
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * * * * * * * *
66013241 TGT-GATCTACTCTACCGTAACTTCAGAGATATAAAATCTGTGGT
1 T-TCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GC
** * * * * * * *
66013285 TTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTATCGGC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGA-TCTCTGC
* * *
66013329 TTCAATCTGCTCCACTATAACCTCAGGGAGATAAGATTTGTCAT-C
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGA--TCTC-TGC
* * * * * * *
66013374 TTCGATCTGCCCCACTGCAACTTTAGGGGGTTAAGA-CT-TGA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * * * * * * *
66013415 TTACTCAGTCTGCTCCGCTGCAACTTCAGAGAGAAAAGATCTGAAATTC
1 TT-C-GA-TCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGC
* * *
66013464 TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGG
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * ** * ** * **
66013505 TGCGATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTAT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGC
** * * * * * **
66013549 TTTAATCCGCTCCACTGTAACTTTAGAGAGATAGGAT-AGTGTC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-C
* *
66013592 TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GC
* * *
66013636 TTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGC
* * *
66013682 TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * ** * * **
66013723 TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCT-GC
** * * * **
66013768 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-C
* *
66013811 TTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTCTGGC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GC
* *
66013855 TTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA-C-CTGA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * ** * * **
66013896 TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTAT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGC
** * * * * **
66013940 TTTAATCCGCTCCACTATAACTTCAGGGAGATAGGAT-AGTGTC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-C
* * * *
66013983 TTCGATATGCTCCGCTGTAATCTCAGTGAGATAAGATCTCTGGC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GC
* * * * * *
66014027 TTCAATATGCTCCACTGTAACCTCAAGGAGATAATATCTGAAATCC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGC
* * *
66014073 TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * ** * * **
66014114 TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTAT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGC
** * * * **
66014158 TTTAAT-TCGCTCCACTGTGACTTCAGGGAGATAGGAT-AGTGCC
1 TTCGATCT-GCTCCACTGTAACCTCAGGGAGATAAGATCTCTG-C
* *
66014201 TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCT-GC
* * * * *
66014245 TTCAATCTGTTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGC
* * * * *
66014291 TTCGGTCTACTCCACTGTAACCTTAGGGAGATACGA-C-CTGA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * ** * * * * **
66014332 TGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTAT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGC
** * * * *
66014376 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-TACTATC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GC
* * * * * **
66014420 TTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---CTGC
* * * *
66014466 TTCGGTCTGCCCCACTGTAATCTCAGGGAGATAAGA-C-CTGA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
* * * **
66014507 TGCGATCTACTCTACTGTAA-CTCCAGAAAGATAAGATCT-T--
1 TTCGATCTGCTCCACTGTAACCT-CAGGGAGATAAGATCTCTGC
* * * * * *
66014547 TT-AATCCGCTCCACTGTAATCTAAGGGAGATAGGAT-TACTATC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT-CT-GC
* * * *
66014590 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
66014629 GTAATTCTTC
Statistics
Matches: 1149, Mismatches: 326, Indels: 161
0.70 0.20 0.10
Matches are distributed among these distances:
38 1 0.00
39 23 0.02
40 9 0.01
41 269 0.23
42 24 0.02
43 136 0.12
44 451 0.39
45 75 0.07
46 152 0.13
47 5 0.00
48 1 0.00
49 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTCTGC
Found at i:66013667 original size:87 final size:86
Alignment explanation
Indices: 66012773--66014623 Score: 568
Period size: 85 Copynumber: 21.4 Consensus size: 86
66012763 ATTAATTTTT
* * * ** * * * * *
66012773 TTCG-TCTGCTCCACTGCAACTTCTGGGAGATAAGA--CTGAATGCGATCTGCTCTACTGCAACT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCTTCAATCTGCTCCACTGTAACC
* * *
66012835 TCAGAGAGATAAGATCTGTGGT
66 TCAGGGAGATAAGATC-CTGGC
** * * * * * * * * * *
66012857 TTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTTC-GTCTACTCCACTGCAA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATT-CTGTC-TTCAATCTGCTCCACTGTAA
* * *
66012921 CTTCAAGGAGATAAGA--CTGGA
64 CCTCAGGGAGATAAGATCCTGGC
* * ** * * * *
66012942 TGT-GATCTGCTCTACTGTAACTTCAAAGAGATAAGA-TCTGTGGTTTTAATCCGCTCCACTATA
1 T-TCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGT--CTTCAATCTGCTCCACTGTA
* * * ** **
66013005 ACTTCAGAGAGATAGGATTGATTTC
63 ACCTCAGGGAGATAAGA-TCCTGGC
* * * * * *
66013030 TTTCG-TCTGCTCCACTGCAACTTCAGGGAGATAAGA--CTGTATGT-GATCTGCTCTACTGCAA
1 -TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCT-TCAATCTGCTCCACTGTAA
* * * *
66013091 CTTCAGAGAGATAAGATCTGTGGT
64 CCTCAGGGAGATAAGATC-CTGGC
** * * * * * * *
66013115 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA--CTGTATGT-GATCTGCTCTACTGCAAC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCT-TCAATCTGCTCCACTGTAAC
* * * *
66013177 TTCAGAGAGATAAGATCTGTGGT
65 CTCAGGGAGATAAGATC-CTGGC
** * * * * * * * *
66013200 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGA--CTGTATGT-GATCTACTCTACCGTAAC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCT-TCAATCTGCTCCACTGTAAC
* * * * * *
66013262 TTCAGAGATATAAAATCTGTGGT
65 CTCAGGGAGATAAGATC-CTGGC
** * * * * * * * *
66013285 TTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTCAATCTGCTCCACTATAAC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCT-GTCTTCAATCTGCTCCACTGTAAC
* *
66013350 CTCAGGGAGATAAGAT-TTGTCATC
65 CTCAGGGAGATAAGATCCTG---GC
* * * * * * * * * *
66013374 TTCGATCTGCCCCACTGCAACTTTAGGGGGTTAAGACT-TGAT-TACTCAGTCTGCTCCGCTGCA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTG-TCT--TCAATCTGCTCCACTGTA
* * * *
66013437 ACTTCAGAGAGAAAAGAT-CTGAAATTC
63 ACCTCAGGGAGATAAGATCCTG----GC
* * * * * * * ** *
66013464 TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG-GTGCGATCTACTCTGCTGTAACT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCTTCAATCTGCTCCACTGTAACC
** ***
66013527 TCAAAGAGATAAGATCCTTTAT
66 TCAGGGAGATAAGATCC-TGGC
** * * * * * ** * * *
66013549 TTTAATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCTTCAATCTGCTCCACTGTAACC
66013614 TCAGGGAGATAAGATCTCTGGC
66 TCAGGGAGATAAGATC-CTGGC
* ** *
66013636 TTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA-TCTGAAATTCTTCGGTCTACTCCACTGT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTG----TCTTCAATCTGCTCCACTGT
*
66013700 AACCTCAGGGAGATAAGA-CCT-GA
62 AACCTCAGGGAGATAAGATCCTGGC
* * ** * * * * * *
66013723 TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTTAATCCGCTCCACTGTAA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT--TCTGTCTTCAATCTGCTCCACTGTAA
* * ** *
66013788 CTTCAGGGAGATAGGATAGTGTC
64 CCTCAGGGAGATAAGATCCTGGC
* * *
66013811 TTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAAC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-TCTGTCTTCAATCTGCTCCACTGTAAC
*
66013876 CTCAGGGAGATAAGA-CCT-GA
65 CTCAGGGAGATAAGATCCTGGC
* * ** * * * * * * *
66013896 TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTATAAC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGT-CTTCAATCTGCTCCACTGTAAC
* * ** *
66013961 TTCAGGGAGATAGGATAGTGTC
65 CTCAGGGAGATAAGATCCTGGC
* * * * * *
66013983 TTCGATATGCTCCGCTGTAATCTCAGTGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAAC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-TCTGTCTTCAATCTGCTCCACTGTAAC
* * *
66014048 CTCAAGGAGATAATAT-CTGAAATCC
65 CTCAGGGAGATAAGATCCTG----GC
* * * * * * * **
66014073 TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAACC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCTTCAATCTGCTCCACTGTAACC
* ***
66014136 TCAGAGAGATAAGATCCTTTAT
66 TCAGGGAGATAAGATCC-TGGC
** * * * ** * * * *
66014158 TTTAAT-TCGCTCCACTGTGACTTCAGGGAGATAGGATAGTGCCTTCGATCTGCTCCGCTGTAAT
1 TTCGATCT-GCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCTTCAATCTGCTCCACTGTAAC
66014222 CTCAGGGAGATAAGATCTCTGGC
65 CTCAGGGAGATAAGATC-CTGGC
* * * ** *
66014245 TTCAATCTGTTCCACTGTAACCTCAAGGAGATAAGA-TCTGAAATTCTTCGGTCTACTCCACTGT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTG----TCTTCAATCTGCTCCACTGT
* * *
66014309 AACCTTAGGGAGATACGA-CCT-GA
62 AACCTCAGGGAGATAAGATCCTGGC
* * ** * * * * * * * *
66014332 TGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAC
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGT-CTTCAATCTGCTCCACTGTAAC
* * * **
66014397 TTCAGGGAGATAGGATTACTATC
65 CTCAGGGAGATAAGA-TCCTGGC
* * * * * ** *
66014420 TTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGA-TCTGAAATTTTTCGGTCTGCCCCACTGT
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTG----TCTTCAATCTGCTCCACTGT
* *
66014484 AATCTCAGGGAGATAAGA-CCT-GA
62 AACCTCAGGGAGATAAGATCCTGGC
* * * ** * *
66014507 TGCGATCTACTCTACTGTAA-CTCCAGAAAGATAAGA-TCT-T-TT-AATCCGCTCCACTGTAAT
1 TTCGATCTGCTCCACTGTAACCT-CAGGGAGATAAGATTCTGTCTTCAATCTGCTCCACTGTAAC
* * * **
66014567 CTAAGGGAGATAGGATTACTATC
65 CTCAGGGAGATAAGA-TCCTGGC
* * *
66014590 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
1 TTCGATCTGCTCCACTGTAACCTCAGGGAGATAA
66014624 AATCTGTAAT
Statistics
Matches: 1333, Mismatches: 357, Indels: 155
0.72 0.19 0.08
Matches are distributed among these distances:
80 27 0.02
81 2 0.00
82 3 0.00
83 26 0.02
84 14 0.01
85 446 0.33
86 48 0.04
87 376 0.28
88 163 0.12
89 68 0.05
90 159 0.12
91 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (86 bp):
TTCGATCTGCTCCACTGTAACCTCAGGGAGATAAGATTCTGTCTTCAATCTGCTCCACTGTAACC
TCAGGGAGATAAGATCCTGGC
Found at i:66013689 original size:218 final size:219
Alignment explanation
Indices: 66013423--66013895 Score: 831
Period size: 219 Copynumber: 2.2 Consensus size: 219
66013413 GATTACTCAG
* * * * *
66013423 TCTGCTCCGCTGCAACTTCAGAGAGAAAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* *
66013488 AGGGAGATAAGACCTGGTGCGATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTA-TTTT
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAAAGAGATAAGATCCTTTATTTTT
*
66013552 AATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
131 AATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
66013617 GGGAGATAAGATCTCTGGCTTCAA
196 GGGAGATAAGATCTCTGGCTTCAA
66013641 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
*
66013706 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTT
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAAAGAGATAAGATCCTTTATTTTT
* *
66013771 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCTCTGTAATCTCA
131 AATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
66013836 GGGAGATAAGATCTCTGGCTTCAA
196 GGGAGATAAGATCTCTGGCTTCAA
*
66013860 TCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA
66013896 TGCGATCTAC
Statistics
Matches: 242, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
218 117 0.48
219 125 0.52
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (219 bp):
TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAAAGAGATAAGATCCTTTATTTTT
AATCCGCTCCACTGTAACTTCAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
GGGAGATAAGATCTCTGGCTTCAA
Found at i:66013916 original size:391 final size:390
Alignment explanation
Indices: 66013473--66014628 Score: 1573
Period size: 391 Copynumber: 3.0 Consensus size: 390
66013463 CTTCGGTCTA
* *
66013473 CTCCACTGTAACCTCAGGGAGATAAGACCTGGTGCGATCTACTCTGCTGTAACTTCAAAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
66013538 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCT
66 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCT
66013603 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGAT
131 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGAT
66013668 AAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTAC
196 AAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTAC
66013733 TCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTTAATCCGCTCCACTGTAACTTCAGGGAG
261 TCTGCTGTAACCTCAGAGAGATAAGATCCTTTA-TTTTAATCCGCTCCACTGTAACTTCAGGGAG
*
66013798 ATAGGATAGTGTCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCT
325 ATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCT
66013863 G
390 G
*
66013864 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
* * * *
66013929 AGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGCT
66 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCT
* * *
66013994 CCGCTGTAATCTCAGTGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGAT
131 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGAT
* *
66014059 AATATCTGAAATCCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTAC
196 AAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTAC
* *
66014124 TCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTGACTTCAGGGAGA
261 TCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGA
*
66014189 TAGGATAGTGCCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
326 TAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
* * * * * ** *
66014254 TTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTT-AGG
1 CTCCACTGTAACCTCAGGGAGATAAGACCTG--A---TGCGATCTACTCTGCTGTAA-CTTCAGA
* * *** ** ** * ** * * **
66014318 GAGATACGA-CC-TGA-TGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTA
60 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGT-CTTCG
* * * ** * * *
66014380 ATCCGCTCCACTGTAA-CTTCAGGGAGATAGGAT-TACTATCTTCAATCTACTCCGCTGTAATCT
124 ATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCT
* * * *
66014443 CAGGGAGATAAGATCTGAAATTTTTCGGTCTGCCCCACTGTAATCTCAGGGAGATAAGACCTGAT
187 CAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAT
* *
66014508 GCGATCTACTCTACTGTAA-CTCCAGAAAGATAAGAT-C----TTTTAATCCGCTCCACTGTAA-
252 GCGATCTACTCTGCTGTAACCT-CAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAAC
* * * * *
66014566 TCTAAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCT
316 T-TCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
66014629 GTAATTCTTC
Statistics
Matches: 681, Mismatches: 72, Indels: 26
0.87 0.09 0.03
Matches are distributed among these distances:
387 1 0.00
388 32 0.05
389 41 0.06
390 121 0.18
391 281 0.41
392 34 0.05
393 141 0.21
394 2 0.00
395 26 0.04
396 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (390 bp):
CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCT
CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGAT
AAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTAC
TCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGA
TAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
Found at i:66014027 original size:172 final size:173
Alignment explanation
Indices: 66013691--66014060 Score: 679
Period size: 172 Copynumber: 2.1 Consensus size: 173
66013681 CTTCGGTCTA
66013691 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
* *
66013756 AGATCCTTTATTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGC
66 AGATCCTTTATTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGC
* *
66013821 TCCTCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
131 TCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATATG
66013864 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
66013929 AGATCCTTTA-TTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGC
66 AGATCCTTTATTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGC
*
66013993 TCCGCTGTAATCTCAGTGAGATAAGATCTCTGGCTTCAATATG
131 TCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATATG
*
66014036 CTCCACTGTAACCTCAAGGAGATAA
1 CTCCACTGTAACCTCAGGGAGATAA
66014061 TATCTGAAAT
Statistics
Matches: 191, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
172 116 0.61
173 75 0.39
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (173 bp):
CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
AGATCCTTTATTTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGC
TCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATATG
Found at i:66014109 original size:218 final size:218
Alignment explanation
Indices: 66013864--66014458 Score: 1019
Period size: 218 Copynumber: 2.7 Consensus size: 218
66013854 CTTCAATCTG
66013864 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
* *
66013929 AGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTCGATATGCT
66 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCT
*
66013994 CCGCTGTAATCTCAGTGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGAT
131 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGAT
*
66014059 AATATCTGAAATCCTTCGGTCTA
196 AAGATCTGAAATCCTTCGGTCTA
66014082 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
* * *
66014147 AGATCCTTTATTTTAATTCGCTCCACTGTGACTTCAGGGAGATAGGATAGTGCCTTCGATCTGCT
66 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCT
* *
66014212 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGTTCCACTGTAACCTCAAGGAGAT
131 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGAT
*
66014277 AAGATCTGAAATTCTTCGGTCTA
196 AAGATCTGAAATCCTTCGGTCTA
* * * *
66014300 CTCCACTGTAACCTTAGGGAGATACGACCTGATGCGATCTACTCTGCTGTAACTTTAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
* * * *
66014365 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTATCTTCAATCTAC
66 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGC
66014430 TCCGCTGTAATCTCAGGGAGATAAGATCT
130 TCCGCTGTAATCTCAGGGAGATAAGATCT
66014459 GAAATTTTTC
Statistics
Matches: 355, Mismatches: 21, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
218 314 0.88
219 41 0.12
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATA
AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCT
CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATATGCTCCACTGTAACCTCAAGGAGAT
AAGATCTGAAATCCTTCGGTCTA
Found at i:66014642 original size:170 final size:172
Alignment explanation
Indices: 66014209--66014675 Score: 636
Period size: 175 Copynumber: 2.7 Consensus size: 172
66014199 CCTTCGATCT
* * ** * * * *
66014209 GCTCCGCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGTTCCACTGTAACCTCAAGG
1 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGG
* * * *
66014273 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTTAGGGAGATACGACCTGATGCGAT
65 AGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
* ** *
66014338 CTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCC
130 CTACTCTACTGTAACTCCAGAAAGATAAGATCC--T-TTTTAATCC
*
66014384 GCTCCACTGTAA-CTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATCTCAGGG
1 GCTCCACTGTAATC-TCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGG
* *
66014448 AGATAAGATCTGAAATTTTTCGGTCTGCCCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
65 AGATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
66014513 CTACTCTACTGTAACTCCAGAAAGATAAGAT-C-TTTTAATCC
130 CTACTCTACTGTAACTCCAGAAAGATAAGATCCTTTTTAATCC
*
66014554 GCTCCACTGTAATCTAAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
* * * * *
66014619 GATAAAATCTGTAATTCTTCGGTCTGTTCCACCGTAATCTCAGGGAAATAAGACCTG
66 GATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG
66014676 TATAATGAAC
Statistics
Matches: 261, Mismatches: 28, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
170 120 0.46
171 1 0.00
174 3 0.01
175 137 0.52
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (172 bp):
GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
GATAAGATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGTAACTCCAGAAAGATAAGATCCTTTTTAATCC
Found at i:66015891 original size:6 final size:6
Alignment explanation
Indices: 66015882--66015932 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
66015872 GCCTTTCCAT
*
66015882 TTTTCA TTTTTCA TTTTCA TTTTTCA TTCTCA TTTTTCA TTTT-- TTTTCA
1 TTTTCA -TTTTCA TTTTCA -TTTTCA TTTTCA -TTTTCA TTTTCA TTTTCA
66015931 TT
1 TT
66015933 CTTTTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
4 4 0.11
6 17 0.45
7 17 0.45
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:66015891 original size:7 final size:7
Alignment explanation
Indices: 66015879--66015925 Score: 71
Period size: 7 Copynumber: 7.0 Consensus size: 7
66015869 TTAGCCTTTC
66015879 CATTTTT
1 CATTTTT
66015886 CATTTTT
1 CATTTTT
66015893 CA-TTTT
1 CATTTTT
66015899 CATTTTT
1 CATTTTT
*
66015906 CA-TTCT
1 CATTTTT
66015912 CATTTTT
1 CATTTTT
66015919 CATTTTT
1 CATTTTT
66015926 TTTCATTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 11 0.31
7 25 0.69
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:66015898 original size:13 final size:13
Alignment explanation
Indices: 66015882--66015924 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
66015872 GCCTTTCCAT
66015882 TTTTCATTTTTCA
1 TTTTCATTTTTCA
66015895 TTTTCATTTTTCA
1 TTTTCATTTTTCA
*
66015908 TTCTCATTTTTCA
1 TTTTCATTTTTCA
66015921 TTTT
1 TTTT
66015925 TTTTCATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:66015902 original size:20 final size:20
Alignment explanation
Indices: 66015879--66015925 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
66015869 TTAGCCTTTC
*
66015879 CATTTTTCATTTTTCA-TTTT
1 CATTTTTCA-TTCTCATTTTT
66015899 CATTTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
66015919 CATTTTT
1 CATTTTT
66015926 TTTCATTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:66015929 original size:10 final size:11
Alignment explanation
Indices: 66015901--66015939 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
66015891 TTCATTTTCA
66015901 TTTTTCATTCT
1 TTTTTCATTCT
66015912 CATTTTTCATT-T
1 --TTTTTCATTCT
66015924 TTTTTCATTCT
1 TTTTTCATTCT
66015935 TTTTT
1 TTTTT
66015940 TTTTACTCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 9 0.36
11 6 0.24
12 1 0.04
13 9 0.36
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTCATTCT
Found at i:66015941 original size:13 final size:12
Alignment explanation
Indices: 66015882--66015932 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
66015872 GCCTTTCCAT
66015882 TTTTCATTTTTCA
1 TTTT-ATTTTTCA
66015895 TTTTCATTTTTCA
1 TTTT-ATTTTTCA
*
66015908 TTCTCATTTTTCA
1 TT-TTATTTTTCA
66015921 -TTT-TTTTTCA
1 TTTTATTTTTCA
66015931 TT
1 TT
66015933 CTTTTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 7 0.21
11 2 0.06
12 1 0.03
13 23 0.68
14 1 0.03
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTATTTTTCA
Found at i:66016812 original size:9 final size:9
Alignment explanation
Indices: 66016736--66016834 Score: 67
Period size: 9 Copynumber: 10.8 Consensus size: 9
66016726 TGACCTCTCC
*
66016736 TTTTTTCTT
1 TTTTTTATT
*
66016745 TTTTTTCTT
1 TTTTTTATT
*
66016754 TTTTTGA-T
1 TTTTTTATT
66016762 TTTTTTATT
1 TTTTTTATT
*
66016771 CTTCTTT-TT
1 -TTTTTTATT
**
66016780 TTTCCTATT
1 TTTTTTATT
*
66016789 TTGACTTTGATT
1 TT---TTTTATT
66016801 TTTTTTATT
1 TTTTTTATT
*
66016810 TTTTTGATT
1 TTTTTTATT
*
66016819 TTTTTGATT
1 TTTTTTATT
66016828 TTTTTTA
1 TTTTTTA
66016835 GTCTGAACTC
Statistics
Matches: 71, Mismatches: 13, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
8 10 0.14
9 50 0.70
10 5 0.07
12 6 0.08
ACGTcount: A:0.09, C:0.07, G:0.05, T:0.79
Consensus pattern (9 bp):
TTTTTTATT
Found at i:66020988 original size:40 final size:40
Alignment explanation
Indices: 66020944--66021042 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
66020934 CATGATTGCT
* *
66020944 CTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAAA-GC
* * *
66020984 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCACAAAGC
66021024 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
66021043 CATCATTCAA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
39 3 0.06
40 36 0.72
41 11 0.22
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAAAGC
Found at i:66021387 original size:29 final size:29
Alignment explanation
Indices: 66021348--66021426 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
66021338 CTTAATAATC
*
66021348 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
66021378 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
66021407 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66021427 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:66021469 original size:43 final size:43
Alignment explanation
Indices: 66021408--66021553 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
66021398 TGCATTTCAA
66021408 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
66021451 GCCCGCACACTCAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
66021494 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
66021537 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
66021554 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:66027033 original size:24 final size:24
Alignment explanation
Indices: 66026988--66027033 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
66026978 ATCTCTCCAT
* * *
66026988 AATCTTCTCCTTGGTTTTCTCCCC
1 AATCCTCTCCTTGATTTCCTCCCC
*
66027012 AATCCTCTCTTTGATTTCCTCC
1 AATCCTCTCCTTGATTTCCTCC
66027034 ACATAACACT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.11, C:0.37, G:0.07, T:0.46
Consensus pattern (24 bp):
AATCCTCTCCTTGATTTCCTCCCC
Found at i:66028735 original size:48 final size:48
Alignment explanation
Indices: 66028664--66028936 Score: 333
Period size: 48 Copynumber: 5.8 Consensus size: 48
66028654 GACACCGTGC
* *
66028664 TAAATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA
1 TAAATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
* * *
66028712 TAAATGTGCATGTGTAAGACCATGTTTGGGACATGGCATCGGTGATAA
1 TAAATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
*
66028760 TAAATGTGCATGTGTAAGACTATGTCTGGGACATGGCATCGGCGATGA
1 TAAATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
* * *
66028808 TATATGTGCCTGTGTAAGACCATGTATGGGACATGGCAT---CGATGA
1 TAAATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
** *
66028853 TATGTGTGCCA-GTGTAAGACCATGTCTGGGACATGGCATCAGCGATGA
1 TAAATGTG-CATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
* * * *
66028901 T--ATGTGGATTCATGTAAGACTATGTCGGGGACATGG
1 TAAATGTGCA-T-GTGTAAGACCATGTCTGGGACATGG
66028937 TATTGGTACT
Statistics
Matches: 199, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
45 41 0.21
46 5 0.03
48 153 0.77
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (48 bp):
TAAATGTGCATGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGA
Found at i:66032906 original size:27 final size:27
Alignment explanation
Indices: 66032875--66033052 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
66032865 TAAATTGTAC
66032875 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66032902 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66032928 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
66032956 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
66032984 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66033011 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
66033038 GGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66033053 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66032989 original size:82 final size:81
Alignment explanation
Indices: 66032876--66033031 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
66032866 AAATTGTACA
* *
66032876 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
66032940 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
66032957 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
66033022 TGCGAGTTGA
65 TGCGAATTGA
66033032 TTATATGGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:66033042 original size:82 final size:81
Alignment explanation
Indices: 66032876--66033052 Score: 230
Period size: 82 Copynumber: 2.2 Consensus size: 81
66032866 AAATTGTACA
* *
66032876 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
*
66032941 GCGAATTGACCATGCG
66 GCGAATTGACCATACG
** *
66032957 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
66033021 GTGCGAGTTGATTATATG
64 GTGCGAATTGACCATACG
*
66033039 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
66033053 GACTCAATAT
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
81 16 0.19
82 67 0.81
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACG
Found at i:66059563 original size:49 final size:47
Alignment explanation
Indices: 66059474--66059673 Score: 303
Period size: 47 Copynumber: 4.2 Consensus size: 47
66059464 TTCACACTAT
* * * * * *
66059474 CCATTCGGCTTTACCACATATATGCA-TGTTCATATTCATCACATTGG
1 CCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACATCGG
*
66059521 CCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGG
66059570 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66059617 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66059664 CCATTAGGCC
1 CCATTAGGCC
66059674 ATACTATCAT
Statistics
Matches: 144, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
47 102 0.71
49 41 0.28
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
Found at i:66059588 original size:96 final size:94
Alignment explanation
Indices: 66059474--66059673 Score: 303
Period size: 96 Copynumber: 2.1 Consensus size: 94
66059464 TTCACACTAT
* * * * * *
66059474 CCATTCGGCTTTACCACATATATGCA-TGTTCATATTCATCACATTGGCCATTCGGCCTTATCAC
1 CCATTAGGCCTTACCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCAC
66059538 ATATATATACACTTTCACATTCATCACATCGG
65 --ATATATACACTTTCACATTCATCACATCGG
*
66059570 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CCATTAGGCCTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
66059635 TATATACACTTTCACATTCATCACATCGG
66 TATATACACTTTCACATTCATCACATCGG
66059664 CCATTAGGCC
1 CCATTAGGCC
66059674 ATACTATCAT
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
94 40 0.42
96 55 0.57
97 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CCATTAGGCCTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
TATATACACTTTCACATTCATCACATCGG
Found at i:66063183 original size:40 final size:40
Alignment explanation
Indices: 66063139--66063321 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 40
66063129 CCAACATGAT
* * * *
66063139 TGCTCTTCGGGACCTAGCCCGGGTATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
66063179 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
66063219 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
66063259 TGCTCTTTGGAACTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGACTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
66063300 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
66063322 CATCATTCAA
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
40 107 0.88
41 8 0.07
42 6 0.05
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:66065000 original size:29 final size:29
Alignment explanation
Indices: 66064937--66065004 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
66064927 TAATCAACCG
66064937 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
66064966 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
66064995 CGCACACTTA
1 CGCACACTTA
66065005 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:66065117 original size:174 final size:174
Alignment explanation
Indices: 66064826--66065153 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
66064816 AACTCAAGGT
* *
66064826 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
66064891 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66064956 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
66065000 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
66065065 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
66065130 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
66065154 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:66065145 original size:29 final size:30
Alignment explanation
Indices: 66065106--66065184 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
66065096 CTTAATAATC
66065106 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
66065136 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
66065165 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66065185 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:66067016 original size:29 final size:29
Alignment explanation
Indices: 66066977--66067055 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
66066967 CTTAATAATC
*
66066977 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
66067007 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
66067036 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
66067056 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:66067098 original size:43 final size:43
Alignment explanation
Indices: 66067037--66067139 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
66067027 TGCATTTCAA
*
66067037 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
66067080 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
66067123 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
66067140 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATT
Found at i:66068739 original size:5 final size:5
Alignment explanation
Indices: 66068719--66068780 Score: 56
Period size: 5 Copynumber: 12.0 Consensus size: 5
66068709 GCCGGGATCA
66068719 CTAA- CTAAT ACTAAT CTAAT CTAA- CTAAT ACTAAT CTAAT ACTAAT
1 CTAAT CTAAT -CTAAT CTAAT CTAAT CTAAT -CTAAT CTAAT -CTAAT
**
66068765 AGAAT ACTAAT CTAAT
1 CTAAT -CTAAT CTAAT
66068781 ATACATTAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
4 8 0.17
5 22 0.46
6 18 0.38
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.34
Consensus pattern (5 bp):
CTAAT
Found at i:66068744 original size:20 final size:21
Alignment explanation
Indices: 66068718--66068781 Score: 96
Period size: 20 Copynumber: 3.0 Consensus size: 21
66068708 AGCCGGGATC
66068718 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
66068739 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
66068759 ACTAA-TAGAATACTAATCTAAT
1 ACTAACT--AATACTAATCTAAT
66068781 A
1 A
66068782 TACATTAACC
Statistics
Matches: 40, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
20 21 0.52
21 4 0.10
22 15 0.38
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:66068757 original size:11 final size:11
Alignment explanation
Indices: 66068718--66068781 Score: 89
Period size: 11 Copynumber: 6.1 Consensus size: 11
66068708 AGCCGGGATC
66068718 ACTAA-CTAAT
1 ACTAATCTAAT
66068728 ACTAATCTAAT
1 ACTAATCTAAT
66068739 -CTAA-CTAAT
1 ACTAATCTAAT
66068748 ACTAATCTAAT
1 ACTAATCTAAT
**
66068759 ACTAATAGAAT
1 ACTAATCTAAT
66068770 ACTAATCTAAT
1 ACTAATCTAAT
66068781 A
1 A
66068782 TACATTAACC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
9 5 0.11
10 13 0.28
11 29 0.62
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:66069389 original size:37 final size:37
Alignment explanation
Indices: 66069339--66069417 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
66069329 TTATTACGAA
* * *
66069339 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
66069376 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
66069413 GTCTT
1 GTCTT
66069418 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:66074671 original size:163 final size:165
Alignment explanation
Indices: 66074354--66074684 Score: 458
Period size: 163 Copynumber: 2.0 Consensus size: 165
66074344 ATTTAATAAT
* *
66074354 ATAAATAATAGATCTAAATAAAATTATTACTATTTATATTTAGGGATATTTTTTTGGATGATCTT
1 ATAAATAATAGATATAAATAAAATTATTACTATTTATATTTAAGGATATTTTTTTGGATGATCTT
* * * * *
66074419 TTATTTGGGGTAAATGGTGAAAAGTAAAAGTTTAGGGGGGAAATAATAAGTTTTGAAGGTTGGGA
66 TTATTTAGGGTAAAGGGTGAAAAGTAAAAGTTTAGGAGGGAAATAAAAAGTTTTGAAGGGTGGGA
* *
66074484 GAATAAAATTTGAGAGGGAAAGTAAATGGGGGTAA
131 GAATAAAATTTGAGAGGGAAAGTAAATAGGGGAAA
* * * *
66074519 ATAAATAGTATATATAAATAAAATTATTACTATTTATGTTTAAGGAT-TTTTTTT-GATGATTTT
1 ATAAATAATAGATATAAATAAAATTATTACTATTTATATTTAAGGATATTTTTTTGGATGATCTT
66074582 TTATTTAGGGTAAAGGGTGAAAAGTAAAAGTTTAGGAGGG-AATAAAAAGTTTTG-AGGGTGAGG
66 TTATTTAGGGTAAAGGGTGAAAAGTAAAAGTTTAGGAGGGAAATAAAAAGTTTTGAAGGGTG-GG
*
66074645 GGAATAAAATTTTG-G-GGGCAAAAGTAAATAGGGGAAA
130 AGAATAAAA-TTTGAGAGGG--AAAGTAAATAGGGGAAA
66074682 ATA
1 ATA
66074685 TTCAAAAAAC
Statistics
Matches: 148, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
161 8 0.05
162 24 0.16
163 67 0.45
164 7 0.05
165 42 0.28
ACGTcount: A:0.40, C:0.02, G:0.24, T:0.34
Consensus pattern (165 bp):
ATAAATAATAGATATAAATAAAATTATTACTATTTATATTTAAGGATATTTTTTTGGATGATCTT
TTATTTAGGGTAAAGGGTGAAAAGTAAAAGTTTAGGAGGGAAATAAAAAGTTTTGAAGGGTGGGA
GAATAAAATTTGAGAGGGAAAGTAAATAGGGGAAA
Found at i:66074783 original size:29 final size:30
Alignment explanation
Indices: 66074731--66074788 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
66074721 TGGGGTGCGA
*
66074731 TGGGAGGGAAGTAAAAGTCTTGGGGGGAAG
1 TGGGAGGGAAGTAAAAGTATTGGGGGGAAG
*
66074761 TGGGAGGG-TGTAAAAGTATTGGGGGGAA
1 TGGGAGGGAAGTAAAAGTATTGGGGGGAA
66074789 ATTAAAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.29, C:0.02, G:0.50, T:0.19
Consensus pattern (30 bp):
TGGGAGGGAAGTAAAAGTATTGGGGGGAAG
Found at i:66075787 original size:41 final size:40
Alignment explanation
Indices: 66075685--66075808 Score: 194
Period size: 40 Copynumber: 3.1 Consensus size: 40
66075675 AAAAATTAAA
*
66075685 GTTGGCTGAATCTTGTAGCTTTCAAAAATGGTATGCTCGT
1 GTTGGCTGAATCTTGTAGCTTTCAAAAATGGTATGCTAGT
**
66075725 GTTTTCTGAATCTTGTAGCTTTCAAAAATGGTATGCTAGT
1 GTTGGCTGAATCTTGTAGCTTTCAAAAATGGTATGCTAGT
* *
66075765 GGTTGGCTGAATCTTGTAGCTTTCAAAAATGGTGTGCTGGT
1 -GTTGGCTGAATCTTGTAGCTTTCAAAAATGGTATGCTAGT
66075806 GTT
1 GTT
66075809 ATTTTTTTTT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
40 40 0.53
41 36 0.47
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.40
Consensus pattern (40 bp):
GTTGGCTGAATCTTGTAGCTTTCAAAAATGGTATGCTAGT
Found at i:66082429 original size:40 final size:39
Alignment explanation
Indices: 66082368--66082448 Score: 144
Period size: 40 Copynumber: 2.1 Consensus size: 39
66082358 CACGCCAATT
66082368 GGGTAACCTCTTTCCCATACATTTTTAATTGCACATTAG
1 GGGTAACCTCTTTCCCATACATTTTTAATTGCACATTAG
*
66082407 GGNGTAACCTCTTTCCCTTACATTTTTAATTGCACATTAG
1 GG-GTAACCTCTTTCCCATACATTTTTAATTGCACATTAG
66082447 GG
1 GG
66082449 ACAATGTGTC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.38
Consensus pattern (39 bp):
GGGTAACCTCTTTCCCATACATTTTTAATTGCACATTAG
Found at i:66086608 original size:23 final size:23
Alignment explanation
Indices: 66086580--66086642 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 23
66086570 TTTTCACAAA
66086580 CAAATTCTCTCTCAAATTTCC-TC
1 CAAATT-TCTCTCAAATTTCCTTC
66086603 TC-AATTTCCTCTC-AATTTCCTTC
1 -CAAATTT-CTCTCAAATTTCCTTC
66086626 CAAATTTCTCTCAAATT
1 CAAATTTCTCTCAAATT
66086643 CATATTTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
22 14 0.40
23 20 0.57
24 1 0.03
ACGTcount: A:0.25, C:0.32, G:0.00, T:0.43
Consensus pattern (23 bp):
CAAATTTCTCTCAAATTTCCTTC
Found at i:66086610 original size:11 final size:11
Alignment explanation
Indices: 66086588--66086623 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
66086578 AACAAATTCT
66086588 CTCTCAAATTTC
1 CTCTC-AATTTC
66086600 CTCTCAATTTC
1 CTCTCAATTTC
66086611 CTCTCAATTTC
1 CTCTCAATTTC
66086622 CT
1 CT
66086624 TCCAAATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.19, C:0.36, G:0.00, T:0.44
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:66086622 original size:22 final size:22
Alignment explanation
Indices: 66086580--66086639 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 22
66086570 TTTTCACAAA
66086580 CAAATTCTCTCTCAAATTTCC-TC
1 CAAATT-TCTCTC-AATTTCCTTC
66086603 TC-AATTTCCTCTCAATTTCCTTC
1 -CAAATTT-CTCTCAATTTCCTTC
66086626 CAAATTTCTCTCAA
1 CAAATTTCTCTCAA
66086640 ATTCATATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
22 16 0.48
23 16 0.48
24 1 0.03
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (22 bp):
CAAATTTCTCTCAATTTCCTTC
Found at i:66086640 original size:11 final size:11
Alignment explanation
Indices: 66086580--66086642 Score: 60
Period size: 11 Copynumber: 5.5 Consensus size: 11
66086570 TTTTCACAAA
66086580 CAAATTCTCTCT
1 CAAATT-TCTCT
66086592 CAAATTTCCTCT
1 CAAATTT-CTCT
66086604 C-AATTTCCTCT
1 CAAATTT-CTCT
66086615 C-AATTTC-CTT
1 CAAATTTCTC-T
66086625 CCAAATTTCTCT
1 -CAAATTTCTCT
66086637 CAAATT
1 CAAATT
66086643 CATATTTAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
9 1 0.02
10 2 0.04
11 24 0.52
12 18 0.39
13 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.00, T:0.43
Consensus pattern (11 bp):
CAAATTTCTCT
Found at i:66086700 original size:51 final size:51
Alignment explanation
Indices: 66086601--66086700 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
66086591 TCAAATTTCC
* *
66086601 TCTCAATTTCCTCTCAATTTCCTTCCAAATTTCTCTCAAATTCATATTTAA
1 TCTCAATTACCTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
* ** * *
66086652 TCTCAATTAGCTCTCAATTTCCTTTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTACCTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTT
66086701 TAAAATAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.26, C:0.26, G:0.01, T:0.47
Consensus pattern (51 bp):
TCTCAATTACCTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
Found at i:66096341 original size:29 final size:27
Alignment explanation
Indices: 66096267--66096342 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 27
66096257 CCAGGACATC
66096267 TTTTTAA-TAATTTGA-TTTAAAATTA
1 TTTTTAATTAATTTGATTTTAAAATTA
*
66096292 TTTTTAATTAGTATTCGATTTTAAAATTA
1 TTTTTAATTA--ATTTGATTTTAAAATTA
*
66096321 TTATTTAATTTAATTTAATTTT
1 TT-TTTAA-TTAATTTGATTTT
66096343 TATTATTGTG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
25 7 0.17
26 2 0.05
28 5 0.12
29 20 0.48
30 5 0.12
31 3 0.07
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (27 bp):
TTTTTAATTAATTTGATTTTAAAATTA
Found at i:66107332 original size:16 final size:16
Alignment explanation
Indices: 66107311--66107341 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66107301 CTATGCATGC
*
66107311 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
66107327 AAAATACAAAAGACA
1 AAAATACAAAAGACA
66107342 TAATAGTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:66116449 original size:11 final size:11
Alignment explanation
Indices: 66116427--66116521 Score: 61
Period size: 11 Copynumber: 8.4 Consensus size: 11
66116417 TACAATCAAA
66116427 CTTTTC-TTTT
1 CTTTTCTTTTT
66116437 CTTTTCTTTTT
1 CTTTTCTTTTT
66116448 CTTTTCTCATTTT
1 CTTTTCT--TTTT
**
66116461 CTTTTCACTTT
1 CTTTTCTTTTT
* *
66116472 ATTTTGC-TATT
1 CTTTT-CTTTTT
*
66116483 -TTTGCTTTCTT
1 CTTTTCTTT-TT
*
66116494 GTTTCTCATTTTT
1 CTTT-TC-TTTTT
66116507 CTTTTCTTTTT
1 CTTTTCTTTTT
66116518 CTTT
1 CTTT
66116522 CAATTGATTT
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
9 1 0.01
10 10 0.15
11 31 0.46
12 6 0.09
13 16 0.24
14 3 0.04
ACGTcount: A:0.05, C:0.19, G:0.03, T:0.73
Consensus pattern (11 bp):
CTTTTCTTTTT
Found at i:66116510 original size:20 final size:21
Alignment explanation
Indices: 66116480--66116519 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
66116470 TTATTTTGCT
66116480 ATTTTTGC-TTTCTTGTTTCTC
1 ATTTTTGCTTTTCTT-TTTCTC
66116501 ATTTTT-CTTTTCTTTTTCT
1 ATTTTTGCTTTTCTTTTTCT
66116520 TTCAATTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.05, C:0.17, G:0.05, T:0.72
Consensus pattern (21 bp):
ATTTTTGCTTTTCTTTTTCTC
Found at i:66126477 original size:20 final size:19
Alignment explanation
Indices: 66126430--66126534 Score: 62
Period size: 20 Copynumber: 5.6 Consensus size: 19
66126420 CAAGATAAAC
66126430 ATTAAATT-A-AATTTAAT
1 ATTAAATTAATAATTTAAT
66126447 ATTAAGA-TAATAACTTTAAT
1 ATTAA-ATTAATAA-TTTAAT
** *
66126467 ATTAAATTAATAAAATACT
1 ATTAAATTAATAATTTAAT
*
66126486 ATTAAAATAACT-A-TTAAT
1 ATTAAATTAA-TAATTTAAT
*
66126504 -TTAAATTTAAT-ATTAAACT
1 ATTAAA-TTAATAATTTAA-T
*
66126523 ATTAAAATAATA
1 ATTAAATTAATA
66126535 TTATTTTTGG
Statistics
Matches: 68, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
17 13 0.19
18 11 0.16
19 21 0.31
20 23 0.34
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (19 bp):
ATTAAATTAATAATTTAAT
Found at i:66126503 original size:37 final size:37
Alignment explanation
Indices: 66126455--66126537 Score: 111
Period size: 37 Copynumber: 2.3 Consensus size: 37
66126445 ATATTAAGAT
66126455 AATAACT-TTAATATTAAA-TTAATA-AAATACTATTAA
1 AATAACTATTAAT-TTAAATTTAATATAAA-ACTATTAA
*
66126491 AATAACTATTAATTTAAATTTAATATTAAACTATTAA
1 AATAACTATTAATTTAAATTTAATATAAAACTATTAA
66126528 AATAA-TATTA
1 AATAACTATTA
66126538 TTTTTGGAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
36 17 0.40
37 24 0.56
38 2 0.05
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (37 bp):
AATAACTATTAATTTAAATTTAATATAAAACTATTAA
Done.