Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 219 of 313
Found at i:67400590 original size:16 final size:16
Alignment explanation
Indices: 67400551--67400592 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
67400541 TTTTATTAAA
*
67400551 ATTAAAACTAATTGTT
1 ATTAAAATTAATTGTT
67400567 ATTAAAATTAATTGTT
1 ATTAAAATTAATTGTT
67400583 ATTAAAATTA
1 ATTAAAATTA
67400593 TATCAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (16 bp):
ATTAAAATTAATTGTT
Found at i:67402737 original size:47 final size:47
Alignment explanation
Indices: 67402659--67403249 Score: 1074
Period size: 47 Copynumber: 12.6 Consensus size: 47
67402649 CCCTTCGGGA
* * * * ** *
67402659 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCGCTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67402706 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67402753 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67402800 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67402847 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67402894 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67402941 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67402988 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67403035 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67403082 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67403129 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67403176 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67403223 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
67403250 TATTCAAATA
Statistics
Matches: 528, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 528 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67408645 original size:23 final size:23
Alignment explanation
Indices: 67408612--67408663 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
67408602 ACATTTTCTT
*
67408612 CACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
67408635 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
67408658 CACTGA
1 CACTGA
67408664 TCAATAACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:67417728 original size:150 final size:150
Alignment explanation
Indices: 67417457--67417754 Score: 596
Period size: 150 Copynumber: 2.0 Consensus size: 150
67417447 TGAGCTAAAC
67417457 AAGAGAAAGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAA
1 AAGAGAAAGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAA
67417522 AACAAAGAAAAATTTTCTCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGA
66 AACAAAGAAAAATTTTCTCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGA
67417587 AGAAAGGTGAAGAGATTCAG
131 AGAAAGGTGAAGAGATTCAG
67417607 AAGAGAAAGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAA
1 AAGAGAAAGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAA
67417672 AACAAAGAAAAATTTTCTCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGA
66 AACAAAGAAAAATTTTCTCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGA
67417737 AGAAAGGTGAAGAGATTC
131 AGAAAGGTGAAGAGATTC
67417755 GGCCATGCAT
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 148 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (150 bp):
AAGAGAAAGGGGGAATTTTGTTCATCCTTTTCTCATCTTCATGCTTGCCAAAAACTAGAAAGAAA
AACAAAGAAAAATTTTCTCATCCTTTGGTTCATCCTTGGCCAAAAATTTTAAGGAGGAAAGAAGA
AGAAAGGTGAAGAGATTCAG
Found at i:67418825 original size:80 final size:79
Alignment explanation
Indices: 67418676--67418898 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
67418666 TTGAATGCTG
* * * ** * * * * *
67418676 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
67418740 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
67418756 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
67418821 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * *
67418836 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
67418899 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:67418879 original size:39 final size:40
Alignment explanation
Indices: 67418729--67418898 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
67418719 GGACTAAGAT
* * *
67418729 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
67418769 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
67418809 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
67418849 CCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
67418888 CCGAAGGCATT
1 CCGAAGGCATT
67418899 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:67418918 original size:79 final size:80
Alignment explanation
Indices: 67418751--67418933 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
67418741 GTGCGAGATA
* *
67418751 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
** **
67418816 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
67418831 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
*
67418895 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
67418910 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
67418934 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:67429102 original size:24 final size:24
Alignment explanation
Indices: 67429075--67429126 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
67429065 GTTGATGTTT
*
67429075 AAAGTATGCATAGCCATATTCATG
1 AAAGTATGCATAGCCATATACATG
*
67429099 AAAGTATGCATAGCCATGTACATG
1 AAAGTATGCATAGCCATATACATG
67429123 AAAG
1 AAAG
67429127 CTATTATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.25
Consensus pattern (24 bp):
AAAGTATGCATAGCCATATACATG
Found at i:67435682 original size:32 final size:31
Alignment explanation
Indices: 67435619--67435679 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
67435609 TAAACATTAA
*
67435619 AAAATTATTTTAAAAATAAAAAAATAAAAAT
1 AAAATAATTTTAAAAATAAAAAAATAAAAAT
* *
67435650 AAAATAATTTTTAAAATTAAAAAATAAAAA
1 AAAATAATTTTAAAAATAAAAAAATAAAAA
67435680 ATATATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (31 bp):
AAAATAATTTTAAAAATAAAAAAATAAAAAT
Found at i:67439443 original size:41 final size:41
Alignment explanation
Indices: 67439397--67439649 Score: 348
Period size: 41 Copynumber: 6.2 Consensus size: 41
67439387 AATATTTTTA
* *
67439397 AATTGCATATATGTGCCCCTATTTGTACTTTGGTACCCCT-
1 AATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTG
* *
67439437 ACATTGCACAAACGTGCCCCTATTTGTACTTCGGTACCCCTG
1 A-ATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTG
* *
67439479 AATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCTTG
1 AATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTG
* * * *
67439520 AATTGTATATATGTGCCCCTATTTGCACTTTGGTACCCCTG
1 AATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTG
* * *
67439561 AATTGCACATGCGTGCCCCTATTTGTACTTTGATACCCCTA
1 AATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTG
* *
67439602 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
1 AATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTG
67439643 AA-TGCAC
1 AATTGCAC
67439650 TTGAATACCC
Statistics
Matches: 185, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
40 6 0.03
41 178 0.96
42 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTG
Found at i:67439616 original size:123 final size:123
Alignment explanation
Indices: 67439397--67439645 Score: 401
Period size: 123 Copynumber: 2.0 Consensus size: 123
67439387 AATATTTTTA
*
67439397 AATTGCATATATGTGCCCCTATTTGTACTTTGGTACCCCTACATTGCACAAACGTGCCCCTATTT
1 AATTGCATATATGTGCCCCTATTTGCACTTTGGTACCCCTACATTGCACAAACGTGCCCCTATTT
* * * *
67439462 GTACTTCGGTACCCCTGAATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCTTG
66 GTACTTCGATACCCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
* **
67439520 AATTGTATATATGTGCCCCTATTTGCACTTTGGTACCCCTGA-ATTGCACATGCGTGCCCCTATT
1 AATTGCATATATGTGCCCCTATTTGCACTTTGGTACCCCT-ACATTGCACAAACGTGCCCCTATT
*
67439584 TGTACTTTGATACCCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
65 TGTACTTCGATACCCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
67439643 AAT
1 AAT
67439646 GCACTTGAAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
123 115 0.99
124 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.35
Consensus pattern (123 bp):
AATTGCATATATGTGCCCCTATTTGCACTTTGGTACCCCTACATTGCACAAACGTGCCCCTATTT
GTACTTCGATACCCCTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTTG
Found at i:67448592 original size:160 final size:161
Alignment explanation
Indices: 67448401--67448725 Score: 564
Period size: 160 Copynumber: 2.0 Consensus size: 161
67448391 TTAGATTTAT
67448401 TATTAGATGATTGGAATCTATTATAGGTAATGGGAATGAGTAAAGATTAAGATTTTGAGTTTCAA
1 TATTAGATGATTGGAATCTATTATAGGTAATGGGAATGAGTAAAGATTAAGATTTTGAGTTTCAA
*
67448466 GTTTGTTTGTCAAAAATTTCAGTTCCAAGAGGAACTAGCCTTAGACCTATGTTTTTGTTTGTTTA
66 GTTTGTTTGTCAAAAATTTCAGTTCCAAGAGGAACTAGCCTTAGACCTATGTTTTTGTTTGTTGA
*
67448531 AGGTGTGTTAT-AACTACTAATTGATTGTGTA
131 AGGTGTGTTATGAA-TACTAATTGATTGTCTA
*
67448562 TATTAGATTATTGGAA-CTATTATAGGTAATGGGAATGAGTAAAGATTAAGATTTTGAGTTTCAA
1 TATTAGATGATTGGAATCTATTATAGGTAATGGGAATGAGTAAAGATTAAGATTTTGAGTTTCAA
*
67448626 GTTTGTTTGTCAAAAATTTCAGTTCCAAGAGGAACTAGCCTTAGACCTATGTTTTTTTTTGTTGA
66 GTTTGTTTGTCAAAAATTTCAGTTCCAAGAGGAACTAGCCTTAGACCTATGTTTTTGTTTGTTGA
* * *
67448691 AGGTGTTTTATGGATACTAATTGATTTTCTA
131 AGGTGTGTTATGAATACTAATTGATTGTCTA
67448722 TATT
1 TATT
67448726 CTGTGGTTAT
Statistics
Matches: 156, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
160 140 0.90
161 16 0.10
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (161 bp):
TATTAGATGATTGGAATCTATTATAGGTAATGGGAATGAGTAAAGATTAAGATTTTGAGTTTCAA
GTTTGTTTGTCAAAAATTTCAGTTCCAAGAGGAACTAGCCTTAGACCTATGTTTTTGTTTGTTGA
AGGTGTGTTATGAATACTAATTGATTGTCTA
Found at i:67459574 original size:36 final size:36
Alignment explanation
Indices: 67459530--67459611 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
67459520 GGTCGTGTAT
*
67459530 TTTTGGGCGTGATATAGAACGAGGATTTGGGCCTCC
1 TTTTGGGCGTGATATAGAACGAGAATTTGGGCCTCC
** *
67459566 TTTTGGGCGTGATATAGAGTGCGAATTTGGGCCTCC
1 TTTTGGGCGTGATATAGAACGAGAATTTGGGCCTCC
67459602 TTTTGGGCGT
1 TTTTGGGCGT
67459612 AACTTGGGCC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.16, C:0.16, G:0.34, T:0.34
Consensus pattern (36 bp):
TTTTGGGCGTGATATAGAACGAGAATTTGGGCCTCC
Found at i:67468711 original size:16 final size:15
Alignment explanation
Indices: 67468685--67468715 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
67468675 GATAAAGATT
67468685 AATAAATTACAATTG
1 AATAAATTACAATTG
67468700 AATAATATTACAATTG
1 AATAA-ATTACAATTG
67468716 CTTTATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (15 bp):
AATAAATTACAATTG
Found at i:67471803 original size:19 final size:19
Alignment explanation
Indices: 67471781--67471829 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
67471771 CAATTGGTTT
*
67471781 AAATCA-AATAAATTATTAA
1 AAATCATAA-AAAATATTAA
67471800 AAATCATAAAAAATATTAA
1 AAATCATAAAAAATATTAA
*
67471819 AAATTATAAAA
1 AAATCATAAAA
67471830 TTCGATTCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 25 0.93
20 2 0.07
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (19 bp):
AAATCATAAAAAATATTAA
Found at i:67474664 original size:32 final size:32
Alignment explanation
Indices: 67474615--67474730 Score: 160
Period size: 32 Copynumber: 3.6 Consensus size: 32
67474605 TAGAGGAATA
* *
67474615 TTGTTATTATTTAACAAAATTAAAGTTGATAT
1 TTGTTATCATTTCACAAAATTAAAGTTGATAT
67474647 TTGTTATCATTTCACAAAATTAAAGTTGATAT
1 TTGTTATCATTTCACAAAATTAAAGTTGATAT
* * * * *
67474679 TTGTTAGCATTTCACAAAATGAACGCTAATAT
1 TTGTTATCATTTCACAAAATTAAAGTTGATAT
*
67474711 TTGTTATCATTTCAAAAAAT
1 TTGTTATCATTTCACAAAAT
67474731 CGCACGTTTA
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 75 1.00
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42
Consensus pattern (32 bp):
TTGTTATCATTTCACAAAATTAAAGTTGATAT
Found at i:67477106 original size:125 final size:125
Alignment explanation
Indices: 67476949--67477174 Score: 339
Period size: 125 Copynumber: 1.8 Consensus size: 125
67476939 TTATTTGAGA
* * *
67476949 AGAAATTGTGAAATCGTGGCCTCGTGGACGCGATTTCGCTACAG-TGGTCATGTAAGAAAT-ATT
1 AGAAATTGTGAAATCGCGCCCTCGTGGACGCGACTTCGCTACAGTTGGTCATGTAAGAAATAATT
*
67477012 TTTTTTTGATGTTTTCTGAGCAAATAGTATAAAATCGCTGATACAAGGATGCTATATTGGGC
66 TTTTTTT-ACG-TTTCTGAGCAAATAGTATAAAATCGCTGATACAAGGATGCTATATTGGGC
* **
67477074 AGAAATTGTTAAATCGCGCCCTCGTGGACGCGACTTCGCTACAGTTGGTCATGTTGGAAATAATT
1 AGAAATTGTGAAATCGCGCCCTCGTGGACGCGACTTCGCTACAGTTGGTCATGTAAGAAATAATT
* *
67477139 TTTTTTTACGTTTCTGAGCAAATAGTGTCAAATCGC
66 TTTTTTTACGTTTCTGAGCAAATAGTATAAAATCGC
67477175 GCCCTCGTGG
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
125 64 0.71
126 16 0.18
127 10 0.11
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (125 bp):
AGAAATTGTGAAATCGCGCCCTCGTGGACGCGACTTCGCTACAGTTGGTCATGTAAGAAATAATT
TTTTTTTACGTTTCTGAGCAAATAGTATAAAATCGCTGATACAAGGATGCTATATTGGGC
Found at i:67478204 original size:29 final size:28
Alignment explanation
Indices: 67478159--67478609 Score: 485
Period size: 28 Copynumber: 16.3 Consensus size: 28
67478149 GTATGTTAGG
67478159 GTTAGGGTTTAGGGTTTATAATTAAATTAA
1 GTTAGGG-TTAGGGTTT-TAATTAAATTAA
** *
67478189 GTTAGGGTTAGGGTTTATAATTGTATTAG
1 GTTAGGGTTAGGGTTT-TAATTAAATTAA
67478218 GTTA-GGTTAGGGTTTTGAATTAAATTAA
1 GTTAGGGTTAGGGTTTT-AATTAAATTAA
*
67478246 GTTAGGGTTAGGGTTTATAATTAAATTAG
1 GTTAGGGTTAGGGTTT-TAATTAAATTAA
67478275 GTTAGGGTTAGGGTTTTTAATTAAATTAA
1 GTTAGGGTTAGGG-TTTTAATTAAATTAA
67478304 GTTAGGGTTTAGGGTTTATAATTAAATTAA
1 GTTAGGG-TTAGGGTTT-TAATTAAATTAA
*
67478334 GTTAGGGTTAGGGTTTATAATTAAATTAG
1 GTTAGGGTTAGGGTTT-TAATTAAATTAA
* *
67478363 GTTA-TGTTAGAGTTTTTAATTAAATTAA
1 GTTAGGGTTAG-GGTTTTAATTAAATTAA
67478391 GTTAGGGTTAGGG-TTT-A-T-AATTAA
1 GTTAGGGTTAGGGTTTTAATTAAATTAA
* *
67478415 ATTA-GGTTAGGGTTTTCAATTCAATTAA
1 GTTAGGGTTAGGGTTTT-AATTAAATTAA
67478443 GTTAGGG-T----TTTTAATTAAATTAA
1 GTTAGGGTTAGGGTTTTAATTAAATTAA
* *
67478466 GTTA-GGTTAGGGGTTTTAATTTAATTAG
1 GTTAGGGTTA-GGGTTTTAATTAAATTAA
*
67478494 GTTA-GGTTAGGGTTTTTAATTCAATTAA
1 GTTAGGGTTAGGG-TTTTAATTAAATTAA
67478522 GTTAGGG-T----TTTTAATTAAATTAA
1 GTTAGGGTTAGGGTTTTAATTAAATTAA
* *
67478545 GTTA-GGTTAGGGGTTTTAATTTAATTAG
1 GTTAGGGTTA-GGGTTTTAATTAAATTAA
*
67478573 GTTA-GGTTAGGGTTTTTAATTCAATTAA
1 GTTAGGGTTAGGG-TTTTAATTAAATTAA
67478601 GTTAGGGTT
1 GTTAGGGTT
67478610 TTTAATTAAA
Statistics
Matches: 365, Mismatches: 26, Indels: 61
0.81 0.06 0.13
Matches are distributed among these distances:
22 4 0.01
23 42 0.12
24 16 0.04
25 1 0.00
26 2 0.01
27 11 0.03
28 133 0.36
29 120 0.33
30 36 0.10
ACGTcount: A:0.30, C:0.01, G:0.24, T:0.45
Consensus pattern (28 bp):
GTTAGGGTTAGGGTTTTAATTAAATTAA
Found at i:67478281 original size:23 final size:23
Alignment explanation
Indices: 67478240--67478621 Score: 131
Period size: 23 Copynumber: 14.4 Consensus size: 23
67478230 TTTTGAATTA
*
67478240 AATTAAGTTAGGGTTAGGGTTTAT
1 AATTAAATTA-GGTTAGGGTTTAT
*
67478264 AATTAAATTAGGTTAGGGTTAGGGTTTTT
1 AATT-AA--A--TTA-GGTTAGGGTTTAT
67478293 AATTAAATTAAGTTAGGGTTTAGGGTTTAT
1 AATTAAA-T----TA-GGT-TAGGGTTTAT
67478323 AATTAAATTAAGTTAGGGTTAGGGTTTAT
1 AATTAAA-----TTAG-GTTAGGGTTTAT
*
67478352 AATTAAATTAGGTTATGTTAGAGTTTTT
1 AATTAAATTAGGTTA-G---G-GTTTAT
67478380 AATTAAATTAAGTTAGGGTTAGGGTTTAT
1 AATT--A--AA-TTA-GGTTAGGGTTTAT
67478409 AATTAAATTAGGTTAGGGTTT-T
1 AATTAAATTAGGTTAGGGTTTAT
* *
67478431 CAATTCAATTAAGTTAGGGTTTTTAATT
1 -AATTAAATTAGGTTAGGG--TTT-A-T
*
67478459 AAATTAAGTTAGGTTAGGGGTTT-T
1 -AATTAAATTAGGTTA-GGGTTTAT
*
67478483 AATTTAATTAGGTTAGGTTAGGGTTTTT
1 AA-TTAA--A--TTAGGTTAGGGTTTAT
* *
67478511 AATTCAATTAAGTTAGGGTTTTTAATT
1 AATTAAATTAGGTTAGGG--TTT-A-T
*
67478538 AAATTAAGTTAGGTTAGGGGTTT-T
1 -AATTAAATTAGGTTA-GGGTTTAT
*
67478562 AATTTAATTAGGTTAGGTTAGGGTTTTT
1 AA-TTAA--A--TTAGGTTAGGGTTTAT
* * *
67478590 AATTCAATTAAGTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAT
67478613 AATTAAATT
1 AATTAAATT
67478622 TAGGGGTTTT
Statistics
Matches: 283, Mismatches: 24, Indels: 103
0.69 0.06 0.25
Matches are distributed among these distances:
22 1 0.00
23 68 0.24
24 22 0.08
25 13 0.05
26 1 0.00
27 27 0.10
28 58 0.20
29 59 0.21
30 22 0.08
32 2 0.01
33 4 0.01
34 6 0.02
ACGTcount: A:0.31, C:0.01, G:0.23, T:0.45
Consensus pattern (23 bp):
AATTAAATTAGGTTAGGGTTTAT
Found at i:67478522 original size:79 final size:78
Alignment explanation
Indices: 67478195--67478621 Score: 511
Period size: 79 Copynumber: 5.3 Consensus size: 78
67478185 TTAAGTTAGG
* ** * *
67478195 GTTAGGGTTTATAATTGTATTAGGTTAGGTTAGGGTTTTGAATTAAATTAAGTTAGGGTTAGGGT
1 GTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTT-AATTTAATTAAGTTA-GGTTAGGGT
* *
67478260 TTATAATTAAATTAGGTTA
64 TTTTAATTCAATTA----A
*
67478279 GGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTTAGGGTTTATAATTAAATTAAGTTAGGGTTA
1 --GTTAGGGTTTTTAATTAAATTAAGTTA-GG-TTAGGGTTT-TAATTTAATTAAGTTA-GGTTA
* *
67478344 GGGTTTATAATTAAATTAGGTTA
60 GGGTTTTTAATTCAATTA----A
* *
67478367 TGTTAGAGTTTTTAATTAAATTAAGTTAGGGTTAGGG-TTT-A--TAATTAAATTAGGTTAGGGT
1 -GTTAGGGTTTTTAATTAAATTAAGTTA-GGTTAGGGTTTTAATTTAATTAAGTTAGGTTAGGGT
*
67478428 TTTCAATTCAATTAA
64 TTTTAATTCAATTAA
*
67478443 GTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGGTTTTAATTTAATTAGGTTAGGTTAGGGTT
1 GTTAGGGTTTTTAATTAAATTAAGTTAGGTTA-GGGTTTTAATTTAATTAAGTTAGGTTAGGGTT
67478508 TTTAATTCAATTAA
65 TTTAATTCAATTAA
*
67478522 GTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGGTTTTAATTTAATTAGGTTAGGTTAGGGTT
1 GTTAGGGTTTTTAATTAAATTAAGTTAGGTTA-GGGTTTTAATTTAATTAAGTTAGGTTAGGGTT
67478587 TTTAATTCAATTAA
65 TTTAATTCAATTAA
67478601 GTTAGGGTTTTTAATTAAATT
1 GTTAGGGTTTTTAATTAAATT
67478622 TAGGGGTTTT
Statistics
Matches: 318, Mismatches: 15, Indels: 23
0.89 0.04 0.06
Matches are distributed among these distances:
74 5 0.02
75 29 0.09
76 4 0.01
77 1 0.00
79 132 0.42
80 20 0.06
81 9 0.03
83 1 0.00
84 1 0.00
85 2 0.01
86 29 0.09
87 31 0.10
88 53 0.17
89 1 0.00
ACGTcount: A:0.30, C:0.01, G:0.23, T:0.45
Consensus pattern (78 bp):
GTTAGGGTTTTTAATTAAATTAAGTTAGGTTAGGGTTTTAATTTAATTAAGTTAGGTTAGGGTTT
TTAATTCAATTAA
Found at i:67478626 original size:19 final size:19
Alignment explanation
Indices: 67478579--67478639 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
67478569 TTAGGTTAGG
*
67478579 TTAGGGTTTTTAATTCAATTAAG
1 TTAGGGTTTTTAATT--A--AAT
67478602 TTAGGGTTTTTAATTAAAT
1 TTAGGGTTTTTAATTAAAT
* *
67478621 TTAGGGGTTTTAATCAAAT
1 TTAGGGTTTTTAATTAAAT
67478640 AATGTCAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 19 0.54
21 1 0.03
23 15 0.43
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.48
Consensus pattern (19 bp):
TTAGGGTTTTTAATTAAAT
Found at i:67480791 original size:14 final size:15
Alignment explanation
Indices: 67480774--67480807 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
67480764 AATAAATATC
67480774 TAAAAATA-CATAAA
1 TAAAAATAGCATAAA
*
67480788 TAAAAATAGCTTAAA
1 TAAAAATAGCATAAA
67480803 TAAAA
1 TAAAA
67480808 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.24
Consensus pattern (15 bp):
TAAAAATAGCATAAA
Found at i:67480940 original size:29 final size:29
Alignment explanation
Indices: 67480906--67480962 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
67480896 TGAAAATTTT
*
67480906 AAAAATTTTAAAATTATT-TTAAAAAAATA
1 AAAAATTGTAAAATT-TTCTTAAAAAAATA
*
67480935 AAAAATTGTATAATTTTCTTAAAAAAAT
1 AAAAATTGTAAAATTTTCTTAAAAAAAT
67480963 GAAATTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (29 bp):
AAAAATTGTAAAATTTTCTTAAAAAAATA
Found at i:67481034 original size:22 final size:22
Alignment explanation
Indices: 67481004--67481045 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
67480994 ATTTGGAGAT
*
67481004 TTTTTGAAGGAATTTGAGAGGA
1 TTTTGGAAGGAATTTGAGAGGA
67481026 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAATTTGAGAG
67481046 TTTGAGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.33, T:0.36
Consensus pattern (22 bp):
TTTTGGAAGGAATTTGAGAGGA
Found at i:67481052 original size:30 final size:30
Alignment explanation
Indices: 67481016--67481075 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
67481006 TTTGAAGGAA
* *
67481016 TTTGAGAGGATTTTGGAAGGAATTTGAGAG
1 TTTGAGAGAATTTTGGAAGGAAATTGAGAG
*
67481046 TTTGAGATAATTTTGGAAGGAAATTGAGAG
1 TTTGAGAGAATTTTGGAAGGAAATTGAGAG
67481076 AACTTTTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (30 bp):
TTTGAGAGAATTTTGGAAGGAAATTGAGAG
Found at i:67481072 original size:22 final size:21
Alignment explanation
Indices: 67481047--67481123 Score: 93
Period size: 22 Copynumber: 3.6 Consensus size: 21
67481037 ATTTGAGAGT
*
67481047 TTGAGATAATTTTGGAAGGAAA
1 TTGAGAGAATTTT-GAAGGAAA
*
67481069 TTGAGAGAACTTTTGAAGGGAA
1 TTGAGAGAA-TTTTGAAGGAAA
67481091 TTGAGAGAATTTTTGAA-GAAA
1 TTGAGAGAA-TTTTGAAGGAAA
*
67481112 TTAAGAGAATTT
1 TTGAGAGAATTT
67481124 GTTTGTGAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
20 3 0.06
21 11 0.22
22 31 0.63
23 4 0.08
ACGTcount: A:0.40, C:0.01, G:0.26, T:0.32
Consensus pattern (21 bp):
TTGAGAGAATTTTGAAGGAAA
Found at i:67482872 original size:15 final size:17
Alignment explanation
Indices: 67482843--67482875 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
67482833 ACTAATTATG
67482843 AAAATATATACTTTTAA
1 AAAATATATACTTTTAA
67482860 AAAATA-ATA-TTTTAA
1 AAAATATATACTTTTAA
67482875 A
1 A
67482876 TATTACATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATATATACTTTTAA
Found at i:67492191 original size:24 final size:24
Alignment explanation
Indices: 67492153--67492200 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
67492143 GGGTTTGTTT
* *
67492153 CAGCAGGCTGGGTTTCACACCACC
1 CAGCAGGATGAGTTTCACACCACC
67492177 CAGCAGGATGAGTTTCACACCACC
1 CAGCAGGATGAGTTTCACACCACC
67492201 TCCACCACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.35, G:0.23, T:0.17
Consensus pattern (24 bp):
CAGCAGGATGAGTTTCACACCACC
Found at i:67498021 original size:15 final size:15
Alignment explanation
Indices: 67498003--67498033 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67497993 TAACGAATAT
67498003 TTTTCTATATTTATA
1 TTTTCTATATTTATA
*
67498018 TTTTTTATATTTATA
1 TTTTCTATATTTATA
67498033 T
1 T
67498034 ATATACATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTCTATATTTATA
Found at i:67498412 original size:15 final size:15
Alignment explanation
Indices: 67498392--67498423 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
67498382 TTTCTATGCC
67498392 ATTGTTGTATTTATT
1 ATTGTTGTATTTATT
*
67498407 ATTGTTGTATTTGTT
1 ATTGTTGTATTTATT
67498422 AT
1 AT
67498424 CGCGACATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.16, T:0.66
Consensus pattern (15 bp):
ATTGTTGTATTTATT
Found at i:67498682 original size:77 final size:77
Alignment explanation
Indices: 67498555--67498707 Score: 297
Period size: 77 Copynumber: 2.0 Consensus size: 77
67498545 TATTGGGTTC
67498555 CAATTTTCTTCGTAAAATCTAACAATCGAGAATTGACCTTTAATCTAACAAAATAAAGCTTGTCA
1 CAATTTTCTTCGTAAAATCTAACAATCGAGAATTGACCTTTAATCTAACAAAATAAAGCTTGTCA
67498620 TCTGAAATTCAT
66 TCTGAAATTCAT
*
67498632 CAATTTTCTTCGTAAAATCTAGCAATCGAGAATTGACCTTTAATCTAACAAAATAAAGCTTGTCA
1 CAATTTTCTTCGTAAAATCTAACAATCGAGAATTGACCTTTAATCTAACAAAATAAAGCTTGTCA
67498697 TCTGAAATTCA
66 TCTGAAATTCA
67498708 ACATGTGGTG
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (77 bp):
CAATTTTCTTCGTAAAATCTAACAATCGAGAATTGACCTTTAATCTAACAAAATAAAGCTTGTCA
TCTGAAATTCAT
Found at i:67509356 original size:100 final size:100
Alignment explanation
Indices: 67509216--67509406 Score: 274
Period size: 100 Copynumber: 1.9 Consensus size: 100
67509206 TCAGTGGAAT
* *
67509216 AGATTAAAGCCGCAACGACGAATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTAAAGCCGCAACGACAAATCTTACTCCCCTGGCGGTGTAGTAGAACAGATTGAAGCTACGA
*
67509281 CGGCGAATCTCATTTCCCCAACATTGCAATTAAAA
66 CGACGAATCTCATTTCCCCAACATTGCAATTAAAA
* * * * *
67509316 AGATTGAAGCCGCAACGGCAAATTTTACTTCCCTGGCGGTGTAGTAGAATAGATTGAAGCTACGA
1 AGATTAAAGCCGCAACGACAAATCTTACTCCCCTGGCGGTGTAGTAGAACAGATTGAAGCTACGA
* ** *
67509381 CGATGAATCTTGTTTCCCCCACATTG
66 CGACGAATCTCATTTCCCCAACATTG
67509407 AAAGACTGAA
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (100 bp):
AGATTAAAGCCGCAACGACAAATCTTACTCCCCTGGCGGTGTAGTAGAACAGATTGAAGCTACGA
CGACGAATCTCATTTCCCCAACATTGCAATTAAAA
Found at i:67509528 original size:44 final size:44
Alignment explanation
Indices: 67509424--67509536 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
67509414 GAAGATGGCG
*
67509424 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCAAT
* ***
67509468 AATCCTT-TCTCCCTGAAGTTGTAGTGGAGTGGATTAAAACCACA-
1 AAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCA-AT
* * *
67509512 GATCTTATCTCTCTGAAGTTACAGT
1 AATCTTATCTCCCTGAAGTTGCAGT
67509537 AGAGTAGATC
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
43 3 0.05
44 50 0.88
45 4 0.07
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCAAT
Found at i:67509604 original size:45 final size:45
Alignment explanation
Indices: 67509553--67509658 Score: 117
Period size: 45 Copynumber: 2.4 Consensus size: 45
67509543 GATCACATCG
* *
67509553 AGTCTTATCTCCCTAAAATTACAGTGGAGCAGACTCAAGAAAGCA
1 AGTCTTATCTCCCTAAAATTACAGTGGAGCAGACTAAAGAAAGAA
* * * *
67509598 AGTCTTATC-CCTCTGAAATTGCAGTGGGGCAGACTAAATAAAGAA
1 AGTCTTATCTCC-CTAAAATTACAGTGGAGCAGACTAAAGAAAGAA
* *
67509643 ATTC-TGTCTCCCTAAA
1 AGTCTTATCTCCCTAAA
67509659 GTTGTAGTGG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
44 9 0.18
45 41 0.82
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (45 bp):
AGTCTTATCTCCCTAAAATTACAGTGGAGCAGACTAAAGAAAGAA
Found at i:67511436 original size:23 final size:22
Alignment explanation
Indices: 67511381--67511436 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
67511371 TTTTATAATC
* *
67511381 TATATATATATGTATATGTCTA
1 TATATTTATATGTATATGTATA
* *
67511403 TTTTTTATATATGTATATGTATA
1 TATATT-TATATGTATATGTATA
67511426 TAATATTTATA
1 T-ATATTTATA
67511437 GTTTTTTCTA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
22 3 0.12
23 20 0.77
24 3 0.12
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (22 bp):
TATATTTATATGTATATGTATA
Found at i:67511493 original size:28 final size:30
Alignment explanation
Indices: 67511440--67511498 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
67511430 ATTTATAGTT
67511440 TTTTCTAACGAATATTTTTCTATATTTATA
1 TTTTCTAACGAATATTTTTCTATATTTATA
*
67511470 TTTT-TAATGAATATTTTT-TATATTTATA
1 TTTTCTAACGAATATTTTTCTATATTTATA
67511498 T
1 T
67511499 ATATACATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 11 0.39
29 13 0.46
30 4 0.14
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTTCTAACGAATATTTTTCTATATTTATA
Found at i:67516004 original size:21 final size:22
Alignment explanation
Indices: 67515967--67516009 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
67515957 TACCACAAAT
67515967 TACAATCACAATCAATT-AATA
1 TACAATCACAATCAATTGAATA
*
67515988 TACAATCATATAT-AATTGAATA
1 TACAATCACA-ATCAATTGAATA
67516010 ACTAAACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (22 bp):
TACAATCACAATCAATTGAATA
Found at i:67520785 original size:24 final size:25
Alignment explanation
Indices: 67520749--67520808 Score: 95
Period size: 26 Copynumber: 2.4 Consensus size: 25
67520739 ATAAAAAATA
*
67520749 ACCAAAATGTTAT-TTTTTTTATTT
1 ACCAAAATATTATATTTTTTTATTT
67520773 ACCAAAATATTATAATTTTTTTATTT
1 ACCAAAATATTAT-ATTTTTTTATTT
67520799 ACCAAAATAT
1 ACCAAAATAT
67520809 ACCAAAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
24 12 0.36
26 21 0.64
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.50
Consensus pattern (25 bp):
ACCAAAATATTATATTTTTTTATTT
Found at i:67520901 original size:27 final size:27
Alignment explanation
Indices: 67520871--67520930 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
67520861 GGCCAATCAC
*
67520871 ATTGGCGGCACCAAAGGTGCCAAAGTG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
67520898 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
67520925 ATTGGC
1 ATTGGC
67520931 CTGACGGACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.30, C:0.22, G:0.33, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:67521383 original size:19 final size:19
Alignment explanation
Indices: 67521359--67521421 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
67521349 AAGCAATAGT
67521359 TTATTAAAGTAAAATAGAG
1 TTATTAAAGTAAAATAGAG
*** ** * *
67521378 TTATTACTTTTTAATAAAC
1 TTATTAAAGTAAAATAGAG
67521397 TTATTAAAGTAAAATAGAG
1 TTATTAAAGTAAAATAGAG
67521416 TTATTA
1 TTATTA
67521422 CTTAATTAGA
Statistics
Matches: 30, Mismatches: 14, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (19 bp):
TTATTAAAGTAAAATAGAG
Found at i:67521568 original size:99 final size:99
Alignment explanation
Indices: 67521397--67521764 Score: 736
Period size: 99 Copynumber: 3.7 Consensus size: 99
67521387 TTTAATAAAC
67521397 TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
1 TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
67521462 ATATTATAAATTTTGGTAATTTGATGAGAATAGA
66 ATATTATAAATTTTGGTAATTTGATGAGAATAGA
67521496 TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
1 TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
67521561 ATATTATAAATTTTGGTAATTTGATGAGAATAGA
66 ATATTATAAATTTTGGTAATTTGATGAGAATAGA
67521595 TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
1 TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
67521660 ATATTATAAATTTTGGTAATTTGATGAGAATAGA
66 ATATTATAAATTTTGGTAATTTGATGAGAATAGA
67521694 TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
1 TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
67521759 ATATTA
66 ATATTA
67521765 GATTTAATTA
Statistics
Matches: 269, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 269 1.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.42
Consensus pattern (99 bp):
TTATTAAAGTAAAATAGAGTTATTACTTAATTAGAATTCTAAGTATCTTAATTATCACTTAACTA
ATATTATAAATTTTGGTAATTTGATGAGAATAGA
Found at i:67522333 original size:27 final size:27
Alignment explanation
Indices: 67522295--67522381 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
67522285 GTCCGATCAG
67522295 GCCAAT-ATCTTTGGCACCTTTGGT-CA
1 GCCAATCA-CTTTGGCACCTTTGGTGCA
*
67522321 GACCAATCACTTTGGCACCTTTGGTGCC
1 G-CCAATCACTTTGGCACCTTTGGTGCA
*
67522349 GCCAATCACTTTGGCACCTTTGGTGCC
1 GCCAATCACTTTGGCACCTTTGGTGCA
67522376 GCCAAT
1 GCCAAT
67522382 GTGATTAGCC
Statistics
Matches: 57, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
26 1 0.02
27 53 0.93
28 3 0.05
ACGTcount: A:0.18, C:0.31, G:0.21, T:0.30
Consensus pattern (27 bp):
GCCAATCACTTTGGCACCTTTGGTGCA
Found at i:67522429 original size:16 final size:17
Alignment explanation
Indices: 67522403--67522439 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
67522393 GATTAGACTG
*
67522403 TTGTCAGGTTTTTTTTT
1 TTGTCAGGTTTTTGTTT
67522420 TTGT-AGGTTTTTGTTT
1 TTGTCAGGTTTTTGTTT
67522436 TTGT
1 TTGT
67522440 TTTTGATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.05, C:0.03, G:0.22, T:0.70
Consensus pattern (17 bp):
TTGTCAGGTTTTTGTTT
Found at i:67522501 original size:27 final size:27
Alignment explanation
Indices: 67522447--67522508 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
67522437 TGTTTTTGAT
**
67522447 ATATTTTGGTAAATAAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAAAGATA
67522474 ATATTTTGGTAAATAAAAAAAAAGATA
1 ATATTTTGGTAAATAAAAAAAAAGATA
*
67522501 ACATTTTG
1 ATATTTTG
67522509 ATTATTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAAAGATA
Found at i:67524366 original size:14 final size:14
Alignment explanation
Indices: 67524347--67524377 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67524337 TGGTGGTTTT
*
67524347 TAATCTAATTTTAC
1 TAATCTAATTTAAC
67524361 TAATCTAATTTAAC
1 TAATCTAATTTAAC
67524375 TAA
1 TAA
67524378 AAACGCAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:67530086 original size:14 final size:14
Alignment explanation
Indices: 67530067--67530114 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
67530057 AAAGTGAACA
67530067 ATATGCTATAATGG
1 ATATGCTATAATGG
* *
67530081 ATATGCTACAA--C
1 ATATGCTATAATGG
*
67530093 ACATGCTATAATGG
1 ATATGCTATAATGG
67530107 ATATGCTA
1 ATATGCTA
67530115 CAACACATGC
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
12 9 0.35
14 17 0.65
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (14 bp):
ATATGCTATAATGG
Found at i:67530098 original size:26 final size:26
Alignment explanation
Indices: 67530069--67530124 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
67530059 AGTGAACAAT
67530069 ATGCTATAATGGATATGCTACAACAC
1 ATGCTATAATGGATATGCTACAACAC
67530095 ATGCTATAATGGATATGCTACAACAC
1 ATGCTATAATGGATATGCTACAACAC
67530121 ATGC
1 ATGC
67530125 ATTGGCATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (26 bp):
ATGCTATAATGGATATGCTACAACAC
Found at i:67541546 original size:19 final size:15
Alignment explanation
Indices: 67541507--67541536 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67541497 GCGTTAGGAC
67541507 ACAACATATTTAATT
1 ACAACATATTTAATT
67541522 ACAACATATTTAATT
1 ACAACATATTTAATT
67541537 CCCAACAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (15 bp):
ACAACATATTTAATT
Found at i:67542144 original size:19 final size:20
Alignment explanation
Indices: 67542120--67542169 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
67542110 TATATAAATC
* *
67542120 TAAAAAAATATTCAT-TAAA
1 TAAAAATATATGCATGTAAA
*
67542139 TAAAAATATATGCATGTACA
1 TAAAAATATATGCATGTAAA
67542159 TAAAAATATAT
1 TAAAAATATAT
67542170 ATAGATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (20 bp):
TAAAAATATATGCATGTAAA
Found at i:67542321 original size:19 final size:20
Alignment explanation
Indices: 67542292--67542335 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
67542282 AAAAAACAAC
* *
67542292 AAATATACATATATAGATAA
1 AAATATACATATAAAAATAA
67542312 AAAT-TACATATAAAAATAA
1 AAATATACATATAAAAATAA
67542331 AAATA
1 AAATA
67542336 ATAATTACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (20 bp):
AAATATACATATAAAAATAA
Found at i:67544126 original size:89 final size:89
Alignment explanation
Indices: 67543951--67544370 Score: 326
Period size: 89 Copynumber: 4.8 Consensus size: 89
67543941 TTAATCCACT
* ** * *
67543951 CCACTGCAACTTTAGGGAGAT-AGAATTATTGGCCTT-AATCTGTTCCACTGCAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAG-ATTATAAG-CTTAAATCTGCTCCACTGCAACTTCAGAGAG
* *
67544014 ATAAGATTCGCCCA-CTTCAGTCTGCC
64 ATAAGATTCG-CCATTTTGAGTCTGCC
* *
67544040 CCACTGCAACCTCAGAGG-GATAAGATTATAAGCTTAAATCTACTCCACTGCAACTTCAGAGAGA
1 CCACTGCAACTTCAG-GGAGATAAGATTATAAGCTTAAATCTGCTCCACTGCAACTTCAGAGAGA
* *
67544104 TAAGATTCGTCATTTTGGGTCTGCC
65 TAAGATTCGCCATTTTGAGTCTGCC
* * * * * * **
67544129 CCAGTGCAACTTCAGGGAGATAAAACTAGATG--T-GATCTGCT-TTCTGCAACTTCAGAGAGAT
1 CCACTGCAACTTCAGGGAGATAAGATTATAAGCTTAAATCTGCTCCACTGCAACTTCAGAGAGAT
** * * *
67544190 AAGA-TCTGTGATTTT-AATCCGCT
66 AAGATTC-GCCATTTTGAGTCTGCC
* * * * *
67544213 CCACTGCAACTTCAAGGAGGTAGGATTATAGGCTTAAATCTGCTCCACTGCAATTTCA-AGGAGA
1 CCACTGCAACTTCAGGGAGATAAGATTATAAGCTTAAATCTGCTCCACTGCAACTTCAGA-GAGA
* * *
67544277 TACGATTCACCATTTTGGGTCTGCC
65 TAAGATTCGCCATTTTGAGTCTGCC
* * * * * * *
67544302 CCACTGCAACTTCAGGGCGATAAGACCTACTTA--TTCAGTCTGCTCCATTGCAACTTCAGGGAG
1 CCACTGCAACTTCAGGGAGATAAGA-TTA-TAAGCTTAAATCTGCTCCACTGCAACTTCAGAGAG
67544365 ATAAGA
64 ATAAGA
67544371 CTAGATGTGA
Statistics
Matches: 256, Mismatches: 59, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
84 30 0.12
85 29 0.11
86 7 0.03
87 9 0.04
88 30 0.12
89 144 0.56
90 6 0.02
91 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (89 bp):
CCACTGCAACTTCAGGGAGATAAGATTATAAGCTTAAATCTGCTCCACTGCAACTTCAGAGAGAT
AAGATTCGCCATTTTGAGTCTGCC
Found at i:67544223 original size:44 final size:43
Alignment explanation
Indices: 67543917--67544540 Score: 352
Period size: 44 Copynumber: 14.3 Consensus size: 43
67543907 CTACTGTGAT
* **
67543917 TTCAGCGAGATAAGATCTATGATTTTAATCCACTCCACTGCAAC
1 TTCAGGGAGATAAGAT-TATGATTTTAATCTGCTCCACTGCAAC
* *** *
67543961 TTTAGGGAGAT-AGAATTATTGGCCTTAATCTGTTCCACTGCAAC
1 TTCAGGGAGATAAG-ATTA-TGATTTTAATCTGCTCCACTGCAAC
* * * * *
67544005 TTCAGGGAGATAAGATT-CGCCCACTTCAGTCTGCCCCACTGCAAC
1 TTCAGGGAGATAAGATTATG---ATTTTAATCTGCTCCACTGCAAC
* * * * *
67544050 CTCAGAGG-GATAAGATTATAAGCTTAAATCTACTCCACTGCAAC
1 TTCAG-GGAGATAAGATTATGA-TTTTAATCTGCTCCACTGCAAC
* * * ** * *
67544094 TTCAGAGAGATAAGATTCGTCATTTTGGGTCTGCCCCAGTGCAAC
1 TTCAGGGAGATAAGATT-ATGATTTT-AATCTGCTCCACTGCAAC
* * * * **
67544139 TTCAGGGAGATAAAACTA-GA-TGTGATCTGCT-TTCTGCAAC
1 TTCAGGGAGATAAGATTATGATTTTAATCTGCTCCACTGCAAC
* * *
67544179 TTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAAC
1 TTCAGGGAGATAAGAT-TATGATTTTAATCTGCTCCACTGCAAC
* * * ** * *
67544223 TTCAAGGAGGTAGGATTATAGGCTTAAATCTGCTCCACTGCAAT
1 TTCAGGGAGATAAGATTAT-GATTTTAATCTGCTCCACTGCAAC
* * ** ** *
67544267 TTCAAGGAGATACGATTCACCATTTTGGGTCTGCCCCACTGCAAC
1 TTCAGGGAGATAAGATT-ATGATTTT-AATCTGCTCCACTGCAAC
* * * * * *
67544312 TTCAGGGCGATAAGACCTACTTA-TTCAGTCTGCTCCATTGCAAC
1 TTCAGGGAGATAAGA-TTA-TGATTTTAATCTGCTCCACTGCAAC
* * * * *
67544356 TTCAGGGAGATAAGACTA-GA-TGTGATCTGAT-CTCTGCAAC
1 TTCAGGGAGATAAGATTATGATTTTAATCTGCTCCACTGCAAC
* * * *
67544396 TTCAGAGAGATAAGAACTGTGATTTTAATCAGCTCCACTGCAAC
1 TTCAGGGAGATAAG-ATTATGATTTTAATCTGCTCCACTGCAAC
* ** *
67544440 TTCAGGGAGATAGGATTATAGGCTTAAATCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGATTAT-GATTTTAATCTGCTCCACTGCAAC
* * * *
67544484 TTCAGGGGGATAAGACT-TGCTTATTCAGTCTGCTCCACTGCAAC
1 TTCAGGGAGATAAGATTATGATT-TT-AATCTGCTCCACTGCAAC
67544528 TTCAGGGAGATAA
1 TTCAGGGAGATAA
67544541 AACTAGATGT
Statistics
Matches: 435, Mismatches: 117, Indels: 56
0.72 0.19 0.09
Matches are distributed among these distances:
40 39 0.09
41 17 0.04
42 9 0.02
43 32 0.07
44 243 0.56
45 91 0.21
46 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
TTCAGGGAGATAAGATTATGATTTTAATCTGCTCCACTGCAAC
Found at i:67544395 original size:173 final size:174
Alignment explanation
Indices: 67544040--67544550 Score: 463
Period size: 173 Copynumber: 3.0 Consensus size: 174
67544030 TCAGTCTGCC
* * * *
67544040 CCACTGCAACCTCAGAGGGATAA-GATTATAAGCTTAAATCTACTCCACTGCAACTTC-AGAGAG
1 CCACTGCAACTTCAGAGAGATAAGGATTATAGGCTTAAATCTGCTCCACTGCAACTTCAAG-GAG
* * * * *
67544103 ATAAGATTCGTCATTTTGGGTCTGCCCCAGTGCAACTTCAGGGAGATAA-AACTA--GATGTGA-
65 ATAAGATTC-ACATTTTGGGTCTGCCCCACTGCAACTTCAGGGAGATAAGACCTACTTAT-TCAG
* * * * *
67544164 TCTGCT--TTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCT
128 TCTGCTCCAT-TGCAACTTCAGGGAGATAAGA-CT-AGA-TGTAATCCGAT
* *
67544213 CCACTGCAACTTCA-AGGAGGT-AGGATTATAGGCTTAAATCTGCTCCACTGCAATTTCAAGGAG
1 CCACTGCAACTTCAGA-GAGATAAGGATTATAGGCTTAAATCTGCTCCACTGCAACTTCAAGGAG
* *
67544276 ATACGATTCACCATTTTGGGTCTGCCCCACTGCAACTTCAGGGCGATAAGACCTACTTATTCAGT
65 ATAAGATTCA-CATTTTGGGTCTGCCCCACTGCAACTTCAGGGAGATAAGACCTACTTATTCAGT
* *
67544341 CTGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGAT
129 CTGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGTAATCCGAT
* * * * ** * * *
67544387 -CTCTGCAACTTCAGAGAGATAAGAACTGT-GATTTTAATCAGCTCCACTGCAACTTCAGGGAGA
1 CCACTGCAACTTCAGAGAGATAAGGATTATAGGCTTAAATCTGCTCCACTGCAACTTCAAGGAGA
* * ** *** * * * *
67544450 TAGGATT-ATAGGCTTAAATCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGCTTATTCAGTC
66 TAAGATTCACA-TTTTGGGTCTGCCCCACTGCAACTTCAGGGAGATAAGACCTACTTATTCAGTC
* *
67544514 TGCTCCACTGCAACTTCAGGGAGATAAAACTAGATGT
130 TGCTCCATTGCAACTTCAGGGAGATAAGACTAGATGT
67544551 CTTCAATCTG
Statistics
Matches: 281, Mismatches: 44, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
171 1 0.00
172 82 0.29
173 144 0.51
174 19 0.07
175 4 0.01
176 10 0.04
177 20 0.07
178 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (174 bp):
CCACTGCAACTTCAGAGAGATAAGGATTATAGGCTTAAATCTGCTCCACTGCAACTTCAAGGAGA
TAAGATTCACATTTTGGGTCTGCCCCACTGCAACTTCAGGGAGATAAGACCTACTTATTCAGTCT
GCTCCATTGCAACTTCAGGGAGATAAGACTAGATGTAATCCGAT
Found at i:67544630 original size:44 final size:44
Alignment explanation
Indices: 67544575--67544806 Score: 107
Period size: 44 Copynumber: 5.3 Consensus size: 44
67544565 GCTGTCGGTG
67544575 CAGGAAGGCAAGATCTGCTATTTTTAGCTTGCTCTGCTGTAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCTTGCTCTGCTGTAACC
* * * * * * * ****
67544619 CAGGGAGGCAAG-GCTGGT-GTCTTCGATCTGCT-TCGCTGTCGGTG
1 CAGGAAGGCAAGATCTGCTATTTTTAGCT-TGCTCT-GCTGT-AACC
* * *
67544663 CAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGTAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCTTGCTCTGCTGTAACC
* * * * * * * ****
67544707 CAGGGAGGCAAG-GCTGGT-GTCTTCGATCTGCT-TCGCTGTCGGTG
1 CAGGAAGGCAAGATCTGCTATTTTTAGCT-TGCTCT-GCTGT-AACC
* * *
67544751 CAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGTAACC
1 CAGGAAGGCAAGATCTGCTATTTTTAGCTTGCTCTGCTGTAACC
*
67544795 CAGGGAGGCAAG
1 CAGGAAGGCAAG
67544807 GCTGGTGTCT
Statistics
Matches: 121, Mismatches: 55, Indels: 24
0.61 0.28 0.12
Matches are distributed among these distances:
42 10 0.08
43 26 0.21
44 51 0.42
45 26 0.21
46 8 0.07
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATTTTTAGCTTGCTCTGCTGTAACC
Found at i:67544702 original size:88 final size:88
Alignment explanation
Indices: 67544548--67544821 Score: 512
Period size: 88 Copynumber: 3.1 Consensus size: 88
67544538 TAAAACTAGA
* * * *
67544548 TGTCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCTTGCTCTGCT
1 TGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCT
67544613 GTAACCCAGGGAGGCAAGGCTGG
66 GTAACCCAGGGAGGCAAGGCTGG
67544636 TGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCT
1 TGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCT
67544701 GTAACCCAGGGAGGCAAGGCTGG
66 GTAACCCAGGGAGGCAAGGCTGG
67544724 TGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCT
1 TGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCT
67544789 GTAACCCAGGGAGGCAAGGCTGG
66 GTAACCCAGGGAGGCAAGGCTGG
67544812 TGTCTTCGAT
1 TGTCTTCGAT
67544822 GGAATGCAAG
Statistics
Matches: 182, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 182 1.00
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (88 bp):
TGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCT
GTAACCCAGGGAGGCAAGGCTGG
Found at i:67544869 original size:69 final size:69
Alignment explanation
Indices: 67544758--67544890 Score: 221
Period size: 69 Copynumber: 1.9 Consensus size: 69
67544748 GTGCAAGAAG
* * *
67544758 GCAAGATCTGCTATTTTTAGCCTGCTCCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTTCGATG
1 GCAAGATCTGCTATTTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATG
67544823 GAAT
66 GAAT
* *
67544827 GCAAGATCTGCTATTTTTAACCTGCTCCACTGCATCCCAGGGAGGCAAGGCTGGTGTGTTCGAT
1 GCAAGATCTGCTATTTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGAT
67544891 CTACTTCGCT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (69 bp):
GCAAGATCTGCTATTTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATG
GAAT
Found at i:67546212 original size:5 final size:5
Alignment explanation
Indices: 67546173--67546206 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
67546163 CTTTTCTCAC
* *
67546173 TTTTT TTTTG TTTTG TTTTG TTTTG TTTTA TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
67546207 TATTTTGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.12, T:0.85
Consensus pattern (5 bp):
TTTTG
Found at i:67546312 original size:14 final size:15
Alignment explanation
Indices: 67546289--67546321 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
67546279 ATCGATGATT
67546289 TTCCAAATAAGG-CC
1 TTCCAAATAAGGTCC
*
67546303 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
67546318 TTCC
1 TTCC
67546322 TAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.27
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:67551170 original size:50 final size:50
Alignment explanation
Indices: 67551103--67551345 Score: 265
Period size: 50 Copynumber: 4.7 Consensus size: 50
67551093 TTTTCTGTAT
* * * * * *
67551103 TGCCAATGCCATATCCCATATATGGTCTTACATGGGAGTTCTTATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
*
67551153 TGCCCATGCCATGTCCCAGACATGGTCTTAC--GGGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAG--CTCTCATCTCGG
* * *
67551203 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
* * * *
67551253 TGTCAATGCCATTTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTC---ATCTC---GG
*
67551309 TGCGAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
67551346 TCGCATTCCC
Statistics
Matches: 164, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
48 5 0.03
50 116 0.71
52 3 0.02
53 5 0.03
56 35 0.21
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGCTCTCATCTCGG
Found at i:67559289 original size:37 final size:37
Alignment explanation
Indices: 67559246--67559318 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
67559236 AAGATTAAAG
67559246 TATGATTAAACCAATTTTGAAATTTGTTTAGTGGCTT
1 TATGATTAAACCAATTTTGAAATTTGTTTAGTGGCTT
67559283 TATGATTAAACCAATTTTGAAATTTGTTTAGTGGCT
1 TATGATTAAACCAATTTTGAAATTTGTTTAGTGGCT
67559319 AAGAATTATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.45
Consensus pattern (37 bp):
TATGATTAAACCAATTTTGAAATTTGTTTAGTGGCTT
Found at i:67560966 original size:16 final size:16
Alignment explanation
Indices: 67560945--67560985 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
67560935 ATTAGTCATT
67560945 TTTCCAAAATTATAGG
1 TTTCCAAAATTATAGG
67560961 TTTCCAAAATTATAGG
1 TTTCCAAAATTATAGG
67560977 TTTCCAAAA
1 TTTCCAAAA
67560986 CACTTCTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (16 bp):
TTTCCAAAATTATAGG
Found at i:67565058 original size:30 final size:30
Alignment explanation
Indices: 67565025--67565340 Score: 200
Period size: 30 Copynumber: 10.7 Consensus size: 30
67565015 TATCGAGGAT
* * *
67565025 TATCGAACTATGAAAAGGGATAGCTTTGAT
1 TATCAAACTATGAAAAGGGATAGCTTCGAC
* * * * *
67565055 TATCAAATTATGAAAATGGATAACTTTGGC
1 TATCAAACTATGAAAAGGGATAGCTTCGAC
*
67565085 TATCAAATTATGAAAAGGGATAGCTTCGAC
1 TATCAAACTATGAAAAGGGATAGCTTCGAC
* * * * *
67565115 TGTCGAATTATGAAAAGGGAT-GGTGACGAC
1 TATCAAACTATGAAAAGGGATAGCT-TCGAC
* * * * *
67565145 CATC-AACAATAAAAAGGGAT-GGTTATGATC
1 TATCAAACTATGAAAAGGGATAGCTT-CGA-C
** * * **
67565175 T-TTGAACTATGAAAAGGGATAACTTTGGT
1 TATCAAACTATGAAAAGGGATAGCTTCGAC
* *
67565204 TATCAAATTATGAAAAGGGATAGCTTCGGC
1 TATCAAACTATGAAAAGGGATAGCTTCGAC
* * *
67565234 TATCAAAATATGAAAAGGGAT-GGTGACGAC
1 TATCAAACTATGAAAAGGGATAGCT-TCGAC
* *
67565264 CATC-AACTATGAAAAGGGATA---ACGAC
1 TATCAAACTATGAAAAGGGATAGCTTCGAC
* * *
67565290 CATCAAAATATGAAAAGGGATAGCTTCAAC
1 TATCAAACTATGAAAAGGGATAGCTTCGAC
* *
67565320 TATCGAACTATGGAAAGGGAT
1 TATCAAACTATGAAAAGGGAT
67565341 GGTGAAAACC
Statistics
Matches: 226, Mismatches: 48, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
26 9 0.04
27 16 0.07
29 39 0.17
30 160 0.71
31 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (30 bp):
TATCAAACTATGAAAAGGGATAGCTTCGAC
Found at i:67565248 original size:119 final size:119
Alignment explanation
Indices: 67565063--67565283 Score: 370
Period size: 119 Copynumber: 1.9 Consensus size: 119
67565053 ATTATCAAAT
* * * *
67565063 TATGAAAATGGATAACTTTGGCTATCAAATTATGAAAAGGGATAGCTTCGACTGTCGAATTATGA
1 TATGAAAAGGGATAACTTTGGCTATCAAATTATGAAAAGGGATAGCTTCGACTATCAAAATATGA
67565128 AAAGGGATGGTGACGACCATCAACAATAAAAAGGGATGGTTATGATCTTTGAAC
66 AAAGGGATGGTGACGACCATCAACAATAAAAAGGGATGGTTATGATCTTTGAAC
* *
67565182 TATGAAAAGGGATAACTTTGGTTATCAAATTATGAAAAGGGATAGCTTCGGCTATCAAAATATGA
1 TATGAAAAGGGATAACTTTGGCTATCAAATTATGAAAAGGGATAGCTTCGACTATCAAAATATGA
* *
67565247 AAAGGGATGGTGACGACCATCAACTATGAAAAGGGAT
66 AAAGGGATGGTGACGACCATCAACAATAAAAAGGGAT
67565284 AACGACCATC
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
119 94 1.00
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (119 bp):
TATGAAAAGGGATAACTTTGGCTATCAAATTATGAAAAGGGATAGCTTCGACTATCAAAATATGA
AAAGGGATGGTGACGACCATCAACAATAAAAAGGGATGGTTATGATCTTTGAAC
Found at i:67565309 original size:27 final size:27
Alignment explanation
Indices: 67565235--67565311 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 27
67565225 AGCTTCGGCT
*
67565235 ATCAAAATATGAAAAGGGATGGTGACGACC
1 ATCAAAATATGAAAAGGGA---TAACGACC
*
67565265 ATC-AACTATGAAAAGGGATAACGACC
1 ATCAAAATATGAAAAGGGATAACGACC
67565291 ATCAAAATATGAAAAGGGATA
1 ATCAAAATATGAAAAGGGATA
67565312 GCTTCAACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 10 0.23
27 16 0.37
29 14 0.33
30 3 0.07
ACGTcount: A:0.48, C:0.13, G:0.22, T:0.17
Consensus pattern (27 bp):
ATCAAAATATGAAAAGGGATAACGACC
Found at i:67571733 original size:9 final size:9
Alignment explanation
Indices: 67571721--67571747 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
67571711 ATTTGTGTAA
67571721 TTTTTAAAG
1 TTTTTAAAG
67571730 TTTTTAAAG
1 TTTTTAAAG
67571739 TTTTTAAAG
1 TTTTTAAAG
67571748 GTTAATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (9 bp):
TTTTTAAAG
Found at i:67572785 original size:25 final size:25
Alignment explanation
Indices: 67572726--67572785 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
67572716 GACCCAGAGT
*
67572726 TCATGAGAGCATACCGATTTACAGC
1 TCATGAGAGCATACCGATTCACAGC
* * *
67572751 TCGTGAGAGCATGCTGATTCACAGC
1 TCATGAGAGCATACCGATTCACAGC
*
67572776 TCATGTGAGC
1 TCATGAGAGC
67572786 TACATGTACA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (25 bp):
TCATGAGAGCATACCGATTCACAGC
Found at i:67578877 original size:50 final size:50
Alignment explanation
Indices: 67578756--67578989 Score: 220
Period size: 50 Copynumber: 4.6 Consensus size: 50
67578746 AAGAATGAGA
*
67578756 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTAATGAGGTTATGAAAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CAT-A-G--ATGAAAGG
* * *
67578812 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACATAGATGAAAGG
* * * * ** * *
67578862 TCCCCTGTAACACCATGCCTGGGACATGGCATGGGCACCGATATGAGAA-C
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACATAGATGA-AAGG
* * * * * **
67578912 TCCCATGTAAGACCATATCTGGGATATGACATTGGCA-ATATAGGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACATAGATGAAAGG
67578961 TCCCATGTAAGACCATGTCTGGGACATGG
1 TCCCATGTAAGACCATGTCTGGGACATGG
67578990 TTTTGGCATA
Statistics
Matches: 149, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
48 2 0.01
49 31 0.21
50 76 0.51
51 1 0.01
52 1 0.01
53 1 0.01
54 1 0.01
56 36 0.24
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACATAGATGAAAGG
Found at i:67580621 original size:25 final size:25
Alignment explanation
Indices: 67580586--67580640 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
67580576 ATGTCTATCT
*
67580586 AGTTAATCTAACCCTATCGAAATTA
1 AGTTAACCTAACCCTATCGAAATTA
67580611 AGTTAACCTAACCCTATCGAAATTA
1 AGTTAACCTAACCCTATCGAAATTA
67580636 AGTTA
1 AGTTA
67580641 TCTTTAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (25 bp):
AGTTAACCTAACCCTATCGAAATTA
Found at i:67592257 original size:16 final size:16
Alignment explanation
Indices: 67592232--67592262 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67592222 TAAGGTTATT
67592232 TAAGTAAAATGATAAA
1 TAAGTAAAATGATAAA
*
67592248 TAAGTTAAATGATAA
1 TAAGTAAAATGATAA
67592263 TAATAATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (16 bp):
TAAGTAAAATGATAAA
Found at i:67595274 original size:51 final size:51
Alignment explanation
Indices: 67595154--67595540 Score: 392
Period size: 51 Copynumber: 7.6 Consensus size: 51
67595144 TCGTTCAATA
* *
67595154 CACGTAGTAGCCTCCACATAATACTACACACGTGATCAAG-TTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTACGGTT
* * *
67595204 CACGTAATAGCCTTCACATAGTACTACACACGTGATCAGGTTTTTACAGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTACGGTT
*
67595255 CACGTAGTAGCCTTTACATAGTACTACACACGTGATCAAGTTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTACGGTT
* ** * *
67595306 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAACTTTT-CGATA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTTTTACGGTT
* * * * * * *
67595357 CACATAGTAGCCTTCACTTAGTGCTACACATGTGA-CCA-TCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTTA-CGGTT
* * * *
67595408 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTT--GGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTTACGGTT
* * * * * * * *
67595459 CACATTGTAGCCTTCACTTAGTACTAGACATGTGA-CAAGTATTTATCGATA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTA-CGGTT
*
67595510 CACGTAGTAGCCTTCACACAGTACTACACAC
1 CACGTAGTAGCCTTCACATAGTACTACACAC
67595541 CTGTTCATCG
Statistics
Matches: 277, Mismatches: 48, Indels: 23
0.80 0.14 0.07
Matches are distributed among these distances:
48 3 0.01
49 7 0.03
50 38 0.14
51 218 0.79
52 7 0.03
53 1 0.00
54 2 0.01
55 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (51 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTTACGGTT
Found at i:67599009 original size:20 final size:20
Alignment explanation
Indices: 67598976--67599033 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
67598966 TTGTACGGGA
*
67598976 TTGCACTTTGGTGCCTTTGT
1 TTGCACTTTGGTGCCTCTGT
* *
67598996 TTGCATTTTAGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
67599016 TTGCACTTTGGTGCCTCT
1 TTGCACTTTGGTGCCTCT
67599034 ATATTTGCAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.07, C:0.22, G:0.22, T:0.48
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:67599031 original size:40 final size:42
Alignment explanation
Indices: 67598976--67599058 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
67598966 TTGTACGGGA
* * *
67598976 TTGCACTTTGGTGCCT-T-TGTTTGCATTTTAGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTATATTTGCACTATAGTGCCTCTGT
*
67599016 TTGCACTTTGGTGCCTCTATATTTGCACTATAGTGCGTCTGT
1 TTGCACTTTGGTGCCTCTATATTTGCACTATAGTGCCTCTGT
67599058 T
1 T
67599059 AGCATTTCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 16 0.43
41 1 0.03
42 20 0.54
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (42 bp):
TTGCACTTTGGTGCCTCTATATTTGCACTATAGTGCCTCTGT
Found at i:67605768 original size:27 final size:27
Alignment explanation
Indices: 67605726--67605965 Score: 220
Period size: 27 Copynumber: 8.9 Consensus size: 27
67605716 ATATTTGGAC
* *
67605726 CGAAATGCCCCCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
* *
67605753 CGAAATACCCTTGAAGGGTAATATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
* ** *
67605780 TGAGTTACCCTCGAAGGGTAAATTTA-
1 CGAAATACCCTCGAAGGGTAAAATTAT
* * *
67605806 CTAAAATACCATCGAAGGGAAAAATTA-
1 C-GAAATACCCTCGAAGGGTAAAATTAT
*
67605833 CTGAAATACCCTTGAAGGGTAAAATTA-
1 C-GAAATACCCTCGAAGGGTAAAATTAT
* * *
67605860 CTAAAATACCCTCGAAGGATAAAATGAT
1 C-GAAATACCCTCGAAGGGTAAAATTAT
*
67605888 CGAAATACCCCCGAAGGGTAAAATTAT
1 CGAAATACCCTCGAAGGGTAAAATTAT
*
67605915 CGAAATA-CCTCTGAAGGGTAAAATGA-
1 CGAAATACCCTC-GAAGGGTAAAATTAT
* * *
67605941 CTGAAGTACCCTCTATGGGTAAAAT
1 C-GAAATACCCTCGAAGGGTAAAAT
67605966 GATTGTAATG
Statistics
Matches: 174, Mismatches: 34, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
26 4 0.02
27 165 0.95
28 5 0.03
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.23
Consensus pattern (27 bp):
CGAAATACCCTCGAAGGGTAAAATTAT
Found at i:67605872 original size:81 final size:81
Alignment explanation
Indices: 67605736--67605968 Score: 274
Period size: 81 Copynumber: 2.9 Consensus size: 81
67605726 CGAAATGCCC
* * **
67605736 CCGAAGGGTAAAATTATCGAAATACCCTTGAAGGGTAATATTATTGAGTTACCCTCGAAGGGTAA
1 CCGAAGGGTAAAATTATCGAAATACCCTTGAAGGGTAAAATTACTGAAATACCCTCGAAGGGTAA
* *
67605801 ATTTA-CTAAAATACCA
66 AATGATC-AAAATACCA
* * * *
67605817 TCGAAGGGAAAAATTA-CTGAAATACCCTTGAAGGGTAAAATTACTAAAATACCCTCGAAGGATA
1 CCGAAGGGTAAAATTATC-GAAATACCCTTGAAGGGTAAAATTACTGAAATACCCTCGAAGGGTA
* *
67605881 AAATGATCGAAATACCC
65 AAATGATCAAAATACCA
* * * *
67605898 CCGAAGGGTAAAATTATCGAAATA-CCTCTGAAGGGTAAAATGACTGAAGTACCCTCTATGGGTA
1 CCGAAGGGTAAAATTATCGAAATACCCT-TGAAGGGTAAAATTACTGAAATACCCTCGAAGGGTA
67605962 AAATGAT
65 AAATGAT
67605969 TGTAATGCCC
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
80 4 0.03
81 122 0.95
82 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.24
Consensus pattern (81 bp):
CCGAAGGGTAAAATTATCGAAATACCCTTGAAGGGTAAAATTACTGAAATACCCTCGAAGGGTAA
AATGATCAAAATACCA
Found at i:67605966 original size:27 final size:27
Alignment explanation
Indices: 67605739--67606104 Score: 157
Period size: 27 Copynumber: 13.6 Consensus size: 27
67605729 AATGCCCCCG
*
67605739 AAGGGTAAAATTA-TCGAAATACCCT-T
1 AAGGGTAAAATGACT-GAAATACCCTCT
* * * ** *
67605765 GAAGGGTAATATTATTGAGTTACCCTCG
1 -AAGGGTAAAATGACTGAAATACCCTCT
* * * * *
67605793 AAGGGTAAATTTACTAAAATACCATCG
1 AAGGGTAAAATGACTGAAATACCCTCT
* *
67605820 AAGGGAAAAATTACTGAAATACCCT-T
1 AAGGGTAAAATGACTGAAATACCCTCT
* * *
67605846 GAAGGGTAAAATTACTAAAATACCCTCG
1 -AAGGGTAAAATGACTGAAATACCCTCT
* * *
67605874 AAGGATAAAATGA-TCGAAATACCCCCG
1 AAGGGTAAAATGACT-GAAATACCCTCT
*
67605901 AAGGGTAAAATTA-TCGAAATA-CCTCT
1 AAGGGTAAAATGACT-GAAATACCCTCT
*
67605927 GAAGGGTAAAATGACTGAAGTACCCTCT
1 -AAGGGTAAAATGACTGAAATACCCTCT
* * * *
67605955 ATGGGTAAAATGATTGTAATGCCC-CT
1 AAGGGTAAAATGACTGAAATACCCTCT
* * *
67605981 ATATGGTTAAATGA-TCGTAACT-CCCT-T
1 A-AGGGTAAAATGACT-G-AAATACCCTCT
* * *
67606008 GCAGGGTAAAATGACCT-TAATGCCC-CT
1 -AAGGGTAAAATGA-CTGAAATACCCTCT
** *
67606035 ATAGGGTAAAATGACTGTCATTCCC-CT
1 A-AGGGTAAAATGACTGAAATACCCTCT
* * *
67606062 GTAGGGTAAAATGACTGTAATTCCCT-T
1 -AAGGGTAAAATGACTGAAATACCCTCT
*
67606089 GTAGGGTAAAATGACT
1 -AAGGGTAAAATGACT
67606105 ATTTTTCCCC
Statistics
Matches: 269, Mismatches: 49, Indels: 42
0.75 0.14 0.12
Matches are distributed among these distances:
26 12 0.04
27 247 0.92
28 9 0.03
29 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AAGGGTAAAATGACTGAAATACCCTCT
Found at i:67606113 original size:27 final size:27
Alignment explanation
Indices: 67605929--67606104 Score: 169
Period size: 27 Copynumber: 6.5 Consensus size: 27
67605919 ATACCTCTGA
* * *
67605929 AGGGTAAAATGACTG-AAGTACCCTCT
1 AGGGTAAAATGACTGTAATTCCCCTGT
* * *
67605955 ATGGGTAAAATGATTGTAATGCCCCTAT
1 A-GGGTAAAATGACTGTAATTCCCCTGT
* * * * *
67605983 ATGGTTAAATGA-TCGTAACTCCCTTGC
1 AGGGTAAAATGACT-GTAATTCCCCTGT
* *
67606010 AGGGTAAAATGACCT-TAATGCCCCTAT
1 AGGGTAAAATGA-CTGTAATTCCCCTGT
*
67606037 AGGGTAAAATGACTGTCATTCCCCTGT
1 AGGGTAAAATGACTGTAATTCCCCTGT
*
67606064 AGGGTAAAATGACTGTAATTCCCTTGT
1 AGGGTAAAATGACTGTAATTCCCCTGT
67606091 AGGGTAAAATGACT
1 AGGGTAAAATGACT
67606105 ATTTTTCCCC
Statistics
Matches: 120, Mismatches: 24, Indels: 11
0.77 0.15 0.07
Matches are distributed among these distances:
26 4 0.03
27 107 0.89
28 8 0.07
29 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (27 bp):
AGGGTAAAATGACTGTAATTCCCCTGT
Found at i:67606115 original size:81 final size:80
Alignment explanation
Indices: 67605902--67606103 Score: 212
Period size: 81 Copynumber: 2.5 Consensus size: 80
67605892 ATACCCCCGA
* * * * * *
67605902 AGGGTAAAATTATCG-AAATACCTCTGAAGGGTAAAATGA-CTGAAGTACCCTCTATGGGTAAAA
1 AGGGTAAAATGATCGTAACTCCCT-TGCAGGGTAAAATGACCTTAA-TGCCC-CTATGGGTAAAA
*
67605965 TGATTGTAATGCCCCTAT
63 TGACTGTAATGCCCCTAT
* *
67605983 ATGGTTAAATGATCGTAACTCCCTTGCAGGGTAAAATGACCTTAATGCCCCTATAGGGTAAAATG
1 AGGGTAAAATGATCGTAACTCCCTTGCAGGGTAAAATGACCTTAATGCCCCTAT-GGGTAAAATG
* * *
67606048 ACTGTCATTCCCCTGT
65 ACTGTAATGCCCCTAT
* *
67606064 AGGGTAAAATGA-CTGTAATTCCCTTGTAGGGTAAAATGAC
1 AGGGTAAAATGATC-GTAACTCCCTTGCAGGGTAAAATGAC
67606104 TATTTTTCCC
Statistics
Matches: 101, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
80 5 0.05
81 86 0.85
82 10 0.10
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (80 bp):
AGGGTAAAATGATCGTAACTCCCTTGCAGGGTAAAATGACCTTAATGCCCCTATGGGTAAAATGA
CTGTAATGCCCCTAT
Found at i:67606152 original size:24 final size:24
Alignment explanation
Indices: 67606123--67606206 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 24
67606113 CCTCGGGGTG
67606123 AAATGATTGATTTGCCTGTGATGT
1 AAATGATTGATTTGCCTGTGATGT
* * *
67606147 AAATGAATGATTCGTCC-GGGATGT
1 AAATGATTGATTTG-CCTGTGATGT
* * *
67606171 AAATGACTGATTTGTCTGTGATTT
1 AAATGATTGATTTGCCTGTGATGT
**
67606195 GTATGATTGATT
1 AAATGATTGATT
67606207 CCGTGCATGG
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
23 1 0.02
24 44 0.94
25 2 0.04
ACGTcount: A:0.26, C:0.08, G:0.25, T:0.40
Consensus pattern (24 bp):
AAATGATTGATTTGCCTGTGATGT
Found at i:67606387 original size:26 final size:26
Alignment explanation
Indices: 67606322--67606387 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
67606312 TTGGCTACAT
67606322 ATACTATT-ATTGGCAGCTTTGCTGCG
1 ATACTATTGA-TGGCAGCTTTGCTGCG
* *
67606348 ATACTGTTGCTGGCAGCTTTGCTGCG
1 ATACTATTGATGGCAGCTTTGCTGCG
*
67606374 ATGCTATTGATGGC
1 ATACTATTGATGGC
67606388 TTTGTGTCGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.17, C:0.20, G:0.27, T:0.36
Consensus pattern (26 bp):
ATACTATTGATGGCAGCTTTGCTGCG
Found at i:67606434 original size:32 final size:32
Alignment explanation
Indices: 67606381--67606566 Score: 219
Period size: 32 Copynumber: 5.8 Consensus size: 32
67606371 GCGATGCTAT
* *
67606381 TGATGGCTTTGTGTCGATCATATTACCATTAC
1 TGATGGCTGTGTGCCGATCATATTACCATTAC
* *
67606413 TGATGGATGTGTGCCGGTCATATTACCATTAC
1 TGATGGCTGTGTGCCGATCATATTACCATTAC
* * *
67606445 TGATGGCTGTGTGTCGATCATATTACTACTAC
1 TGATGGCTGTGTGCCGATCATATTACCATTAC
* * *
67606477 TGATGGCTTTGTGCCGATCATACTACTATTAC
1 TGATGGCTGTGTGCCGATCATATTACCATTAC
* ** * *
67606509 TGATGGCTGTGTGCCGGTCATATTATTACTAT
1 TGATGGCTGTGTGCCGATCATATTACCATTAC
* *
67606541 TGATGGCTTTGTGCCAATCATATTAC
1 TGATGGCTGTGTGCCGATCATATTAC
67606567 TGTACTTATG
Statistics
Matches: 131, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 131 1.00
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (32 bp):
TGATGGCTGTGTGCCGATCATATTACCATTAC
Found at i:67606545 original size:96 final size:95
Alignment explanation
Indices: 67606381--67606581 Score: 276
Period size: 96 Copynumber: 2.1 Consensus size: 95
67606371 GCGATGCTAT
* * *
67606381 TGATGGCTTTGTGTCGATCATATTACCATTACTGATGGATGTGTGCCGGTCATATTACCATTACT
1 TGATGGCTTTGTGCCGATCATACTACCATTACTGATGGATGTGTGCCGGTCATATTACCACTACT
* *
67606446 GATGGCTGTGTGTCGATCATATTACTACTAC
66 GATGGCTGTGTGCCAATCATATTACT-CTAC
* * ** *
67606477 TGATGGCTTTGTGCCGATCATACTACTATTACTGATGGCTGTGTGCCGGTCATATTATTACTATT
1 TGATGGCTTTGTGCCGATCATACTACCATTACTGATGGATGTGTGCCGGTCATATTACCACTACT
* *
67606542 GATGGCTTTGTGCCAATCATATTACTGTAC
66 GATGGCTGTGTGCCAATCATATTACTCTAC
*
67606572 TTATGGCTTT
1 TGATGGCTTT
67606582 TAGCCATTCT
Statistics
Matches: 92, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
95 12 0.13
96 80 0.87
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (95 bp):
TGATGGCTTTGTGCCGATCATACTACCATTACTGATGGATGTGTGCCGGTCATATTACCACTACT
GATGGCTGTGTGCCAATCATATTACTCTAC
Found at i:67606597 original size:22 final size:22
Alignment explanation
Indices: 67606572--67606641 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 22
67606562 ATTACTGTAC
67606572 TTATGGCTTTTAGCCATTCTGT
1 TTATGGCTTTTAGCCATTCTGT
* * * *
67606594 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTTTTAGCCATTCTGT
* * *
67606616 TTACGGCTCTTAGCCATTCTGG
1 TTATGGCTTTTAGCCATTCTGT
67606638 TTAT
1 TTAT
67606642 TGGCAGCTTT
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (22 bp):
TTATGGCTTTTAGCCATTCTGT
Found at i:67615003 original size:7 final size:7
Alignment explanation
Indices: 67614991--67615021 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
67614981 AGTTTTTCAA
67614991 TCATCCC
1 TCATCCC
*
67614998 TCATCCT
1 TCATCCC
67615005 TCATCCC
1 TCATCCC
67615012 TCATCCC
1 TCATCCC
67615019 TCA
1 TCA
67615022 CTCATTCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (7 bp):
TCATCCC
Found at i:67615015 original size:21 final size:22
Alignment explanation
Indices: 67614991--67615031 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
67614981 AGTTTTTCAA
*
67614991 TCATCCCTCA-TCCTTCATCCC
1 TCATCCCTCACTCATTCATCCC
67615012 TCATCCCTCACTCATTCATC
1 TCATCCCTCACTCATTCATC
67615032 ATTCTCTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.17, C:0.49, G:0.00, T:0.34
Consensus pattern (22 bp):
TCATCCCTCACTCATTCATCCC
Found at i:67628558 original size:41 final size:41
Alignment explanation
Indices: 67628501--67628629 Score: 132
Period size: 41 Copynumber: 3.3 Consensus size: 41
67628491 GATTCAGGGA
67628501 ATCAGCACTTAGCAACCCCTTCACATTTAAGATATGGTGGG
1 ATCAGCACTTAGCAACCCCTTCACATTTAAGATATGGTGGG
* *
67628542 ATCAGCACTTAGCAACCAC--CA-A--T-A-AT-TCGG-GGC
1 ATCAGCACTTAGCAACCCCTTCACATTTAAGATAT-GGTGGG
* * *
67628575 ATCAGCATTTAGCAACCCTTTTCACATTTAAGATACGGTGGG
1 ATCAGCACTTAGCAACCC-CTTCACATTTAAGATATGGTGGG
67628617 ATCAGCACTTAGC
1 ATCAGCACTTAGC
67628630 CACCACCAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 21
0.70 0.08 0.21
Matches are distributed among these distances:
33 19 0.28
34 4 0.06
35 1 0.01
36 3 0.04
37 1 0.01
38 1 0.01
39 3 0.04
40 1 0.01
41 22 0.32
42 14 0.20
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (41 bp):
ATCAGCACTTAGCAACCCCTTCACATTTAAGATATGGTGGG
Found at i:67628635 original size:75 final size:74
Alignment explanation
Indices: 67628461--67628670 Score: 305
Period size: 75 Copynumber: 2.8 Consensus size: 74
67628451 TATCCGTTAT
* *
67628461 CGGT-GGATTCAGCACTTAGCAACCACCAGTGATTCAGGGAATCAGCACTTAGCAACCCCTTCAC
1 CGGTGGGA-TCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTCAC
67628525 ATTTAAGATA
65 ATTTAAGATA
* * * * *
67628535 TGGTGGGATCAGCACTTAGCAACCACCAATAATTCGGGGCATCAGCATTTAGCAACCCTTTTCAC
1 CGGTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCC-CTTCAC
67628600 ATTTAAGATA
65 ATTTAAGATA
* * *
67628610 CGGTGGGATCAGCACTTAGCCACCACCAATGAGTCGGGGAATCATCACTTAGCAACCCCTT
1 CGGTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTT
67628671 GGGGGAATCA
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
74 50 0.42
75 69 0.58
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (74 bp):
CGGTGGGATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTCACA
TTTAAGATA
Found at i:67628731 original size:104 final size:102
Alignment explanation
Indices: 67628570--67628772 Score: 291
Period size: 104 Copynumber: 2.0 Consensus size: 102
67628560 CCAATAATTC
* * * * **
67628570 GGGGCATCAGCATTTAGCAACCCTTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCCACCA
1 GGGGAATCAGCACTTAGCAACCCTTTTCACATTCAAGATACGGTGGAATCAGCACTTAGAAACCA
* *
67628635 CCAATGAGTCGGGGAATCATCACTTAGCAACCCCTTG
66 CCAATGAGTCGGGGAATCAGCACTTAACAACCCCTTG
*
67628672 GGGGAATCAGCACTTAGCAACCCCCTTTT-ATATTCAAGGATACGGTGGAATCAGCACTTAGAAA
1 GGGGAATCAGCACTTAGCAA--CCCTTTTCACATTCAA-GATACGGTGGAATCAGCACTTAGAAA
67628736 CCACCAATGAGTCGGGGAATCAGCACTTAACAACCCC
63 CCACCAATGAGTCGGGGAATCAGCACTTAACAACCCC
67628773 CTTCGTATTC
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
102 18 0.20
103 6 0.07
104 65 0.73
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCTTTTCACATTCAAGATACGGTGGAATCAGCACTTAGAAACCA
CCAATGAGTCGGGGAATCAGCACTTAACAACCCCTTG
Found at i:67634958 original size:33 final size:34
Alignment explanation
Indices: 67634907--67635038 Score: 117
Period size: 33 Copynumber: 3.7 Consensus size: 34
67634897 TTATCCGTTA
*
67634907 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGGTGGAATCAGCACTTAGCAACCACCAGTGAT
* *
67634941 TCGG-GGAATCAGCACTTAGCAACCCCTTCACATTTAAGAT
1 TCGGTGGAATCAGCACTTAGCAA--CC-AC-CA-GT--GAT
* *
67634981 AT-GGTGGGATCAGCACTTAGCAACCACCAGTAAT
1 -TCGGTGGAATCAGCACTTAGCAACCACCAGTGAT
*
67635015 TCAG-GGAATCAGCACTTAGCAACC
1 TCGGTGGAATCAGCACTTAGCAACC
67635039 CCTTTCACAT
Statistics
Matches: 79, Mismatches: 9, Indels: 21
0.72 0.08 0.19
Matches are distributed among these distances:
33 37 0.47
34 7 0.09
35 2 0.03
36 2 0.03
37 4 0.05
38 2 0.03
39 2 0.03
40 5 0.06
41 18 0.23
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (34 bp):
TCGGTGGAATCAGCACTTAGCAACCACCAGTGAT
Found at i:67635030 original size:74 final size:75
Alignment explanation
Indices: 67634916--67635080 Score: 287
Period size: 74 Copynumber: 2.2 Consensus size: 75
67634906 ATCGGTGGAT
* *
67634916 TCAGCACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCC-TTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAGTAATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
**
67634980 TATGGTGGGA
66 TACAGTGGGA
67634990 TCAGCACTTAGCAACCACCAGTAATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAGTAATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
67635055 TACAGTGGGA
66 TACAGTGGGA
67635065 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
67635081 CCTTTCACAT
Statistics
Matches: 86, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
74 49 0.57
75 37 0.43
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (75 bp):
TCAGCACTTAGCAACCACCAGTAATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGA
TACAGTGGGA
Found at i:67635081 original size:42 final size:42
Alignment explanation
Indices: 67635022--67635122 Score: 193
Period size: 42 Copynumber: 2.4 Consensus size: 42
67635012 AATTCAGGGA
67635022 ATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGG
1 ATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGG
*
67635064 ATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGG
1 ATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGG
67635106 ATCAGCACTTAGCAACC
1 ATCAGCACTTAGCAACC
67635123 ACCAATGAGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (42 bp):
ATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGG
Found at i:67635153 original size:33 final size:33
Alignment explanation
Indices: 67635106--67635259 Score: 122
Period size: 33 Copynumber: 4.5 Consensus size: 33
67635096 ATACGGTGGG
67635106 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
1 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
* *
67635139 ATCATCACTTAGCAACC-CC--T---TGGGGGA
1 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
* *
67635166 ATCAGCACTTAGCAACCCCCTTTTATATTCAAGGATACGGTGGA
1 ATCAGCACTTAGCAACCACC----A-A-T-GA-G-T-CGG-GGA
67635210 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
1 ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
*
67635243 ATCATCACTTAGCAACC
1 ATCAGCACTTAGCAACC
67635260 CCCTTCGTAT
Statistics
Matches: 97, Mismatches: 7, Indels: 34
0.70 0.05 0.25
Matches are distributed among these distances:
27 22 0.23
28 2 0.02
30 1 0.01
32 2 0.02
33 35 0.36
34 3 0.03
35 1 0.01
36 2 0.02
37 1 0.01
38 1 0.01
39 1 0.01
40 1 0.01
42 1 0.01
43 2 0.02
44 22 0.23
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (33 bp):
ATCAGCACTTAGCAACCACCAATGAGTCGGGGA
Found at i:67635153 original size:117 final size:116
Alignment explanation
Indices: 67634948--67635159 Score: 361
Period size: 117 Copynumber: 1.8 Consensus size: 116
67634938 GATTCGGGGA
* *
67634948 ATCAGCACTTAGCAACCCCTTCACATTTAAGATATGGTGGGATCAGCACTTAGCAACCACCAGTA
1 ATCAGCACTTAGCAACCCCTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATA
*
67635013 ATTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGG
66 AGTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGG
67635064 ATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAAT
1 ATCAGCACTTAGCAACCCC-TTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAAT
* * *
67635129 GAGTCGGGGAATCATCACTTAGCAACCCCTT
65 AAGTCAGGGAATCAGCACTTAGCAACCCCTT
67635160 GGGGGAATCA
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
116 19 0.21
117 70 0.79
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (116 bp):
ATCAGCACTTAGCAACCCCTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATA
AGTCAGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACAGTGGG
Found at i:67635242 original size:104 final size:102
Alignment explanation
Indices: 67635064--67635261 Score: 342
Period size: 104 Copynumber: 1.9 Consensus size: 102
67635054 ATACAGTGGG
* *
67635064 ATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAAT
1 ATCAGCACTTAGCAACCCCTTTCACATTCAAGATACGGTGGAATCAGCACTTAGCAACCACCAAT
67635129 GAGTCGGGGAATCATCACTTAGCAACCCCTTGGGGGA
66 GAGTCGGGGAATCATCACTTAGCAACCCCTTGGGGGA
* *
67635166 ATCAGCACTTAGCAACCCCCTTTTATATTCAAGGATACGGTGGAATCAGCACTTAGCAACCACCA
1 ATCAGCACTTAGCAA-CCCCTTTCACATTCAA-GATACGGTGGAATCAGCACTTAGCAACCACCA
67635231 ATGAGTCGGGGAATCATCACTTAGCAACCCC
64 ATGAGTCGGGGAATCATCACTTAGCAACCCC
67635262 CTTCGTATTC
Statistics
Matches: 90, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
102 15 0.17
103 13 0.14
104 62 0.69
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (102 bp):
ATCAGCACTTAGCAACCCCTTTCACATTCAAGATACGGTGGAATCAGCACTTAGCAACCACCAAT
GAGTCGGGGAATCATCACTTAGCAACCCCTTGGGGGA
Found at i:67637991 original size:22 final size:22
Alignment explanation
Indices: 67637947--67637988 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
67637937 ACAGAACTAA
*
67637947 AAAAAATAAATAAATGAAACCT
1 AAAAAATAAATAAAAGAAACCT
*
67637969 AAAAAA-AACTAAAAGAAACC
1 AAAAAATAAATAAAAGAAACC
67637989 CTAGCCCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.71, C:0.12, G:0.05, T:0.12
Consensus pattern (22 bp):
AAAAAATAAATAAAAGAAACCT
Found at i:67639044 original size:44 final size:44
Alignment explanation
Indices: 67638978--67639091 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
67638968 TCAATATACT
* * * *
67638978 CCACTGCAACCTCAAGGAGATAAGATTTGCTTCT-TCAGTCTACC
1 CCACTGTAACTTCAGGGAGATAAGACTTG-TTCTCTCAGTCTACC
* * * * *
67639022 CCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTCAGTCTGCT
1 CCACTGTAACTTCAGGGAGATAAGACTTGTTCTCTCAGTCTACC
*
67639066 CTACTGTAACTTCAGGGAGATAAGAC
1 CCACTGTAACTTCAGGGAGATAAGAC
67639092 CCGATGCGAT
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 3 0.05
44 54 0.95
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (44 bp):
CCACTGTAACTTCAGGGAGATAAGACTTGTTCTCTCAGTCTACC
Found at i:67639421 original size:87 final size:87
Alignment explanation
Indices: 67639227--67639627 Score: 606
Period size: 87 Copynumber: 4.6 Consensus size: 87
67639217 ACTTGTAATC
* ** * *
67639227 TTCGATCTGCTTCACTGTCGACGCAGGAGGGAAAGATCTGCTATCTTTAACCAGCTCCACT-CAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
67639291 CCGATGGAGGTAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * *
67639313 TTCGATCTGCTTCGCTATTAACGCAGGAAGGTAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
67639378 CTGATGGAGGCAAGGCTTTGCT
66 CCGATGGAGGCAAGGCTTTGTT
* * *
67639400 TTCGATCTGCTTCGCTGTTAACACAAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACCGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
67639465 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
** * *
67639487 TTTTATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCCTCAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
67639552 CCGAAGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* *
67639574 TTTGATCGGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAG
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAG
67639628 TGGAGGCAAG
Statistics
Matches: 285, Mismatches: 29, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
86 55 0.19
87 230 0.81
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:67639516 original size:174 final size:172
Alignment explanation
Indices: 67639227--67639729 Score: 663
Period size: 174 Copynumber: 3.0 Consensus size: 172
67639217 ACTTGTAATC
* ** * *
67639227 TTCGATCTGCTTCACTGTCGACGCAGGAGGGAAAGATCTGCTATCTTTAACCAGCTCCACTCAAC
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCAC-CAAC
* * * *
67639292 CGATGGAGGTAAGGCTTTGTTTTCGATCTGCTTCGCTATTAACGCAGGAAGGTAAGATCTGCTAT
65 CGATGGAGGCAAGGCTTTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTAT
* *
67639357 CTTTAACCAGCTCCACTACAACTGATGGAGGCAAGGCTTTGCT
130 CTTCAACCAGCTCCACTGCAACTGATGGAGGCAAGGCTTTGCT
* *
67639400 TTCGATCTGCTTCGCTGTTAACACAAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACCGCAA
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA-C-CAA
**
67639465 CCGATGGAGGCAAGGCTTTGTTTTTTATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
64 CCGATGGAGGCAAGGCTTTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
* * * *
67639530 TCCTCAACCAGCTCCACTGCAACCGAAGGAGGCAAGGCTTTGTT
129 TCTTCAACCAGCTCCACTGCAACTGATGGAGGCAAGGCTTTGCT
* *
67639574 TTTGATCGGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTT----A-----ACC-A--
1 TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACCAACC
* * *
67639627 G-TGGAGGCAAGGCTTTATTTTCAATTTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTATC
66 GATGGAGGCAAGGCTTTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATC
*
67639691 TTCAACCAGCTCCACTGTAACTGATGGAGGCAAGGCTTT
131 TTCAACCAGCTCCACTGCAACTGATGGAGGCAAGGCTTT
67639730 ATTTTTTATC
Statistics
Matches: 297, Mismatches: 32, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
159 93 0.31
160 1 0.00
162 1 0.00
163 1 0.00
164 1 0.00
165 1 0.00
170 1 0.00
173 52 0.18
174 146 0.49
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (172 bp):
TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACCAACC
GATGGAGGCAAGGCTTTGTTTTCAATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATC
TTCAACCAGCTCCACTGCAACTGATGGAGGCAAGGCTTTGCT
Found at i:67639521 original size:43 final size:43
Alignment explanation
Indices: 67639472--67639608 Score: 100
Period size: 42 Copynumber: 3.2 Consensus size: 43
67639462 CAACCGATGG
* *
67639472 AGGCAAGGCTTTGTTTTTTATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTTAATCAGCTTCGCTGTTAACGCAGGA
* * * * * * * * *
67639515 AGGCAA-GATCTGCTATCCTCAACCAGCTCCACTG-CAACCGAAGG-
1 AGGCAAGGCTTTG-T-T-TTTAATCAGCTTCGCTGTTAA-CGCAGGA
* *
67639559 AGGCAAGGCTTTGTTTTTGATCGGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTTAATCAGCTTCGCTGTTAACGCAGGA
67639602 AGGCAAG
1 AGGCAAG
67639609 ATCTGCTATC
Statistics
Matches: 65, Mismatches: 22, Indels: 14
0.64 0.22 0.14
Matches are distributed among these distances:
42 19 0.29
43 17 0.26
44 10 0.15
45 19 0.29
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (43 bp):
AGGCAAGGCTTTGTTTTTAATCAGCTTCGCTGTTAACGCAGGA
Found at i:67639674 original size:72 final size:72
Alignment explanation
Indices: 67639557--67639699 Score: 223
Period size: 72 Copynumber: 2.0 Consensus size: 72
67639547 TGCAACCGAA
* ** * *
67639557 GGAGGCAAGGCTTTGTTTTTGATCGGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTT
1 GGAGGCAAGGCTTTATTTTCAATCGGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTATCTTC
67639622 AACCAGT
66 AACCAGT
**
67639629 GGAGGCAAGGCTTTATTTTCAATTTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTATCTTC
1 GGAGGCAAGGCTTTATTTTCAATCGGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTATCTTC
67639694 AACCAG
66 AACCAG
67639700 CTCCACTGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.30
Consensus pattern (72 bp):
GGAGGCAAGGCTTTATTTTCAATCGGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCTATCTTC
AACCAGT
Found at i:67646989 original size:21 final size:21
Alignment explanation
Indices: 67646947--67646986 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
67646937 CAGAACTAAA
*
67646947 AAAAATAAATAAATGAAACCT
1 AAAAATAAATAAAAGAAACCT
*
67646968 AAAAA-AACTAAAAGAAACC
1 AAAAATAAATAAAAGAAACC
67646987 CTAGCCCTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.70, C:0.12, G:0.05, T:0.12
Consensus pattern (21 bp):
AAAAATAAATAAAAGAAACCT
Found at i:67647749 original size:17 final size:18
Alignment explanation
Indices: 67647724--67647758 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
67647714 TGGACTGCTA
67647724 TTGGATTATTTT-TTAAT
1 TTGGATTATTTTATTAAT
*
67647741 TTGGTTTATTTTATTAAT
1 TTGGATTATTTTATTAAT
67647759 GGGCCGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (18 bp):
TTGGATTATTTTATTAAT
Found at i:67649760 original size:17 final size:17
Alignment explanation
Indices: 67649717--67649762 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
67649707 TTTGACAACT
*
67649717 TTAATTAATCAATTTAC
1 TTAATTAATTAATTTAC
*
67649734 TTAAATAATTAATTTAC
1 TTAATTAATTAATTTAC
67649751 TTAATTAATTAA
1 TTAATTAATTAA
67649763 ACCCAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATTAATTAATTTAC
Found at i:67653999 original size:30 final size:31
Alignment explanation
Indices: 67653944--67654011 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
67653934 ACACTTAAAA
** * **
67653944 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
67653975 TATTTACACT-TTAATCCCTCAAATTTTGAG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
67654005 TATTTAC
1 TATTTAC
67654012 TCTTGGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTGAG
Found at i:67663484 original size:22 final size:22
Alignment explanation
Indices: 67663434--67663484 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
67663424 TTTCTATCAG
*
67663434 TATATGAGAAGAGGCATTCCTN
1 TATATGAGAAGAGGCATTCCTC
*
67663456 TATATGAGAATAGGCATTCCTGC
1 TATATGAGAAGAGGCATTCCT-C
67663479 TA-ATGA
1 TATATGA
67663485 AAAATATCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.29
Consensus pattern (22 bp):
TATATGAGAAGAGGCATTCCTC
Found at i:67670112 original size:18 final size:19
Alignment explanation
Indices: 67670077--67670112 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67670067 AAGCCACGCA
*
67670077 GCCGTGTGAGAGGGTCTAG
1 GCCGTGTGAGAAGGTCTAG
67670096 GCCGTGTGA-AAGGTCTA
1 GCCGTGTGAGAAGGTCTA
67670113 CATGGCCGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.19, C:0.17, G:0.42, T:0.22
Consensus pattern (19 bp):
GCCGTGTGAGAAGGTCTAG
Found at i:67670194 original size:21 final size:21
Alignment explanation
Indices: 67670153--67670199 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
67670143 GTGAATGCGG
* * *
67670153 CACATGGCCGTGTGGTGGAGA
1 CACATGCCCGTGTGATAGAGA
67670174 CACATGCCCGTGTGATAGAGA
1 CACATGCCCGTGTGATAGAGA
*
67670195 TACAT
1 CACAT
67670200 AACCATGTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (21 bp):
CACATGCCCGTGTGATAGAGA
Found at i:67671057 original size:17 final size:17
Alignment explanation
Indices: 67671019--67671064 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
67671009 CAAAACAAAT
67671019 TAAAAT-AAAAATAAAG
1 TAAAATGAAAAATAAAG
67671035 TAAAATGAATAAATAAA-
1 TAAAATGAA-AAATAAAG
67671052 TAAAATGTAAAAA
1 TAAAATG-AAAAA
67671065 CAATATTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.22
17 12 0.44
18 9 0.33
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.22
Consensus pattern (17 bp):
TAAAATGAAAAATAAAG
Found at i:67671468 original size:25 final size:24
Alignment explanation
Indices: 67671440--67671488 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
67671430 GAGCAGTGTT
67671440 CATACAGAAGAAAATAGTGTAGGG
1 CATACAGAAGAAAATAGTGTAGGG
* *
67671464 NCATATAGAATAAAATAGTGTAGGG
1 -CATACAGAAGAAAATAGTGTAGGG
67671489 AACCGTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.45, C:0.06, G:0.27, T:0.20
Consensus pattern (24 bp):
CATACAGAAGAAAATAGTGTAGGG
Found at i:67674645 original size:28 final size:28
Alignment explanation
Indices: 67674605--67674666 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
67674595 TATTTCTCAC
* * * *
67674605 ATCCCAACGGACTTACCCCATGTTTATT
1 ATCCTAACGGACTTAACCCATATTTAAT
67674633 ATCCTAACGGACTTAACCCATATTTAAT
1 ATCCTAACGGACTTAACCCATATTTAAT
67674661 ATCCTA
1 ATCCTA
67674667 GCGGGTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (28 bp):
ATCCTAACGGACTTAACCCATATTTAAT
Found at i:67676865 original size:25 final size:25
Alignment explanation
Indices: 67676828--67676924 Score: 113
Period size: 25 Copynumber: 3.8 Consensus size: 25
67676818 TGTTTTGAAC
*
67676828 CACATCTCGTGTGAGCATACTAATT
1 CACAGCTCGTGTGAGCATACTAATT
* * ** *
67676853 CATATCTCGTGTGAGCAGGCCTATTTT
1 CACAGCTCGTGTGAGCA-TACTA-ATT
*
67676880 CACAGCTCGTGTGAGCATACTGATT
1 CACAGCTCGTGTGAGCATACTAATT
67676905 CACAGCTCGTGTGAGCATAC
1 CACAGCTCGTGTGAGCATAC
67676925 ATGTACAAGA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
25 38 0.63
26 5 0.08
27 17 0.28
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (25 bp):
CACAGCTCGTGTGAGCATACTAATT
Found at i:67681093 original size:30 final size:30
Alignment explanation
Indices: 67681050--67681122 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
67681040 CGACAGAAAA
* * *
67681050 CGATGGCTTTCGATTGCGT-TTGATAGAAGC
1 CGATGACTGTCGATTGCATCTT-ATAGAAGC
67681080 CGATGACTGTCGATTGCATCTTATAGAAGC
1 CGATGACTGTCGATTGCATCTTATAGAAGC
*
67681110 TGATGACTGTCGA
1 CGATGACTGTCGA
67681123 CGCTGGCATC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 36 0.95
31 2 0.05
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (30 bp):
CGATGACTGTCGATTGCATCTTATAGAAGC
Found at i:67685415 original size:51 final size:51
Alignment explanation
Indices: 67685248--67685584 Score: 255
Period size: 51 Copynumber: 6.6 Consensus size: 51
67685238 GAAGTTGCTA
* * * *
67685248 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTAACTGAATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAG-ATGAAAAT
* * * *
67685298 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA--TGCATACCGAATAGCTTAAA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTAT-CAG-AT-G--AAAAT
* * *
67685351 --TCACGTGTGTAGTACTATATGCAGGCTACTCCGTGTATCAGATGAAAAT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGAAAAT
* * * * * *
67685400 GGTCACATGTTTAGTACTATGTACAAGCTACTATGTGTATCGAAATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-AGATGAAAAT
* * * * * * ***
67685450 GGTCGCATCTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT-AGCTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGAAAAT
* *
67685500 CGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GTATGAAAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAG-ATGAAAAT
*
67685552 GGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
67685585 TGTGAATCGG
Statistics
Matches: 224, Mismatches: 47, Indels: 31
0.74 0.16 0.10
Matches are distributed among these distances:
48 6 0.03
49 7 0.03
50 68 0.30
51 129 0.58
52 8 0.04
53 6 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATGAAAAT
Found at i:67685516 original size:101 final size:102
Alignment explanation
Indices: 67685402--67685586 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 102
67685392 ATGAAAATGG
* * * *
67685402 TCACATGTTTAGTACTATGTACAAGCTACTATGTGTATCGAAATG-ATA-GGTCGCATCTGTAGT
1 TCACATGTGTAGTACTATGTACAAGCTACTACGTGTATCG-AATGAAAATGGTCACATCTGTAGT
67685465 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * * * *
67685503 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGTATGAAAATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTACAAGCTACTACGTGTATCGAATGAAAATGGTCACATCTGTAGTA
*
67685568 CTATGTGTAGGCTACTATG
66 CTATGTGCAGGCTACTATG
67685587 TGAATCGGGT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
100 3 0.04
101 37 0.51
102 32 0.44
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTACAAGCTACTACGTGTATCGAATGAAAATGGTCACATCTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:67685526 original size:152 final size:151
Alignment explanation
Indices: 67685248--67685593 Score: 523
Period size: 152 Copynumber: 2.3 Consensus size: 151
67685238 GAAGTTGCTA
* * * *
67685248 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTAACTGAATGATAGGTCGCATGTGTAGT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATC-GAATGATAGGTCGCATCTGTAGT
67685313 ACTATGTGCAGGCTACTATGCATACCGAATAGCTTAAATCACGTGTGTAGTACTATATGCAGGCT
65 ACTATGTGCAGGCTACTATGCATACCGAATAGCTTAAATCACGTGTGTAGTACTATATGCAGGCT
*
67685378 ACTCCGTGTATCAG-ATGAAAAT
130 ACTACGTGTATC-GTATGAAAAT
* * *
67685400 GGTCACATGTTTAGTACTATGTACAAGCTACTATGTGTATCGAAATGATAGGTCGCATCTGTAGT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCG-AATGATAGGTCGCATCTGTAGT
* * ** *
67685465 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCACGTGTGTAGTACTATGTGCAGGCT
65 ACTATGTGCAGGCTACTATGCATACCGAATAGCTTAAATCACGTGTGTAGTACTATATGCAGGCT
67685530 ACTACGTGTATCGTATGAAAAT
130 ACTACGTGTATCGTATGAAAAT
* *
67685552 GGTCACATGTGTAGTACTATGTGTAGGCTACTATGTGAATCG
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCG
67685594 GGTATCATTT
Statistics
Matches: 174, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
151 2 0.01
152 172 0.99
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATGATAGGTCGCATCTGTAGTA
CTATGTGCAGGCTACTATGCATACCGAATAGCTTAAATCACGTGTGTAGTACTATATGCAGGCTA
CTACGTGTATCGTATGAAAAT
Found at i:67685587 original size:26 final size:26
Alignment explanation
Indices: 67685508--67685588 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
67685498 TTCGATCACG
*
67685508 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGAAGGCTACTA
* **
67685534 CGTGTA-T-CGTATGAAAATGG-TCAC-A
1 TGTGTAGTAC-TATGTGAA-GGCT-ACTA
*
67685559 TGTGTAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTATGTGAAGGCTACTA
67685585 TGTG
1 TGTG
67685589 AATCGGGTAT
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
24 1 0.03
25 17 0.43
26 21 0.52
27 1 0.03
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGAAGGCTACTA
Found at i:67686627 original size:15 final size:15
Alignment explanation
Indices: 67686607--67686639 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
67686597 TGAAATAGGA
67686607 GTGATGTTTATATTG
1 GTGATGTTTATATTG
67686622 GTGATGTTTATATTG
1 GTGATGTTTATATTG
67686637 GTG
1 GTG
67686640 CATTACTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.30, T:0.52
Consensus pattern (15 bp):
GTGATGTTTATATTG
Found at i:67691201 original size:51 final size:50
Alignment explanation
Indices: 67691081--67691417 Score: 232
Period size: 51 Copynumber: 6.7 Consensus size: 50
67691071 AGTTGCTAGG
* * * * * *
67691081 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTAACGGAATG-ATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGT-ACCGAATGCATTGA
** * *
67691131 TTGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGCTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAAT-GCATTGA
* * * * * * *
67691182 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATG-CATTGA
* * * * * *
67691233 TCACTTGTGTAGTACTATATGCAGGCTACTATGTGTATCAGAATG-ATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTA-CCGAATGCATTGA
***
67691283 TCGTATGTGTAGTACTATGTGCAGGCTACTATGCGTACC-ACATAGC-TTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGA-AT-GCATT-GA
* * * * * * * * *
67691334 TCACGTGTGTAATACTATGTGCAGGCTGCTACGTGTATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATG-CATTGA
** *
67691385 TCACACGTGTAGTACTATATGCAGGCTACTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
67691418 TGAACCGGGT
Statistics
Matches: 221, Mismatches: 55, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
48 1 0.00
49 9 0.04
50 70 0.32
51 136 0.62
52 5 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATGCATTGA
Found at i:67691292 original size:101 final size:101
Alignment explanation
Indices: 67691081--67691313 Score: 274
Period size: 101 Copynumber: 2.3 Consensus size: 101
67691071 AGTTGCTAGG
* * * **
67691081 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTAACGGAATGATAGGTTGCATGTGTAGTAC
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTAACGGAATGAAAGGTCACATGTGTAGTAC
* * * *
67691146 TATGTGCAGGCTACTATGCGTACCGAATAGCTTTGA
66 TATATGCAGGCTACTATGCGTACAGAATAGCATAGA
* * *
67691182 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATGAAAATGGTCACTTGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTAACGGAATG-AAA-GGTCACATGTGTAGT
* *
67691246 ACTATATGCAGGCTACTATGTGTATCAGAAT-G-ATAGG
64 ACTATATGCAGGCTACTATGCGTA-CAGAATAGCATAGA
**
67691283 TCGTATGTGTAGTACTATGTGCAGGCTACTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTA
67691314 TGCGTACCAC
Statistics
Matches: 114, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
100 3 0.03
101 71 0.62
102 35 0.31
103 5 0.04
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.32
Consensus pattern (101 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTAACGGAATGAAAGGTCACATGTGTAGTAC
TATATGCAGGCTACTATGCGTACAGAATAGCATAGA
Found at i:67691343 original size:101 final size:102
Alignment explanation
Indices: 67691233--67691417 Score: 248
Period size: 101 Copynumber: 1.8 Consensus size: 102
67691223 ATGAAAATGG
* * * * ** *
67691233 TCACTTGTGTAGTACTATATGCAGGCTACTATGTGTATCAGAATG-ATA-GGTCGTATGTGTAGT
1 TCACGTGTGTAATACTATATGCAGGCTACTACGTGTATC-GAATGAAAATGGTCACACGTGTAGT
*
67691296 ACTATGTGCAGGCTACTATGCGTACCACATAGCTTCGA
65 ACTATATGCAGGCTACTATGCGTACCACATAGCTTCGA
* * *
67691334 TCACGTGTGTAATACTATGTGCAGGCTGCTACGTGTATCGGATGAAAATGGTCACACGTGTAGTA
1 TCACGTGTGTAATACTATATGCAGGCTACTACGTGTATCGAATGAAAATGGTCACACGTGTAGTA
67691399 CTATATGCAGGCTACTATG
66 CTATATGCAGGCTACTATG
67691418 TGAACCGGGT
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
100 4 0.06
101 36 0.51
102 31 0.44
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAATACTATATGCAGGCTACTACGTGTATCGAATGAAAATGGTCACACGTGTAGTA
CTATATGCAGGCTACTATGCGTACCACATAGCTTCGA
Found at i:67691355 original size:152 final size:152
Alignment explanation
Indices: 67691079--67691419 Score: 549
Period size: 152 Copynumber: 2.2 Consensus size: 152
67691069 GAAGTTGCTA
* * * * * *
67691079 GGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTAACGGAATGATAGGTTGCATGTGTAGT
1 GGTCACATGTGTAGTACTATATGCAGGCTACTATGTGTAACAGAATGATAGGTCGCATGTGTAGT
* *
67691144 ACTATGTGCAGGCTACTATGCGTACCGAATAGCTTTGATCACGTGTGTAGTACTATGTGCAGGCT
66 ACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGATCACGTGTGTAATACTATGTGCAGGCT
67691209 ACTACGTGTATCGGATGAAAAT
131 ACTACGTGTATCGGATGAAAAT
* * *
67691231 GGTCACTTGTGTAGTACTATATGCAGGCTACTATGTGTATCAGAATGATAGGTCGTATGTGTAGT
1 GGTCACATGTGTAGTACTATATGCAGGCTACTATGTGTAACAGAATGATAGGTCGCATGTGTAGT
67691296 ACTATGTGCAGGCTACTATGCGTACC-ACATAGCTTCGATCACGTGTGTAATACTATGTGCAGGC
66 ACTATGTGCAGGCTACTATGCGTACCGA-ATAGCTTCGATCACGTGTGTAATACTATGTGCAGGC
*
67691360 TGCTACGTGTATCGGATGAAAAT
130 TACTACGTGTATCGGATGAAAAT
*
67691383 GGTCACACGTGTAGTACTATATGCAGGCTACTATGTG
1 GGTCACATGTGTAGTACTATATGCAGGCTACTATGTG
67691420 AACCGGGTAT
Statistics
Matches: 175, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
151 1 0.01
152 174 0.99
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (152 bp):
GGTCACATGTGTAGTACTATATGCAGGCTACTATGTGTAACAGAATGATAGGTCGCATGTGTAGT
ACTATGTGCAGGCTACTATGCGTACCGAATAGCTTCGATCACGTGTGTAATACTATGTGCAGGCT
ACTACGTGTATCGGATGAAAAT
Done.