Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 22 of 313
Found at i:7524275 original size:43 final size:43
Alignment explanation
Indices: 7524227--7524366 Score: 130
Period size: 43 Copynumber: 3.3 Consensus size: 43
7524217 GTCTCAGATG
*
7524227 TGGTCTTACATGTAAA-CAAATATCGATGCCACTGTCCTAGACA
1 TGGTCTTACATGTAAATCAAATATCGATGCCA-TGTCCCAGACA
* * **
7524270 CGGTCTT--ATGTGAAATCAAATA-CGATGCCAAGTCCCAGATG
1 TGGTCTTACATGT-AAATCAAATATCGATGCCATGTCCCAGACA
* *
7524311 TGGTCTTACACGTAAATCATAAGT-T-GATGCCAATGTCCCAAACA
1 TGGTCTTACATGTAAATCA-AA-TATCGATGCC-ATGTCCCAGACA
7524355 TGGTCTTACATG
1 TGGTCTTACATG
7524367 AAAACACATA
Statistics
Matches: 77, Mismatches: 12, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
41 17 0.22
42 17 0.22
43 23 0.30
44 20 0.26
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (43 bp):
TGGTCTTACATGTAAATCAAATATCGATGCCATGTCCCAGACA
Found at i:7524369 original size:85 final size:85
Alignment explanation
Indices: 7524209--7524369 Score: 202
Period size: 85 Copynumber: 1.9 Consensus size: 85
7524199 AGCTCGTACA
* * * * *
7524209 ATGCCAACGTCTCAGATGTGGTCTTACATGTAAACAAATATCGATGCCACTGTCCTAGACACGGT
1 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAACAAATATCGATGCCAATGTCCCAAACACGGT
**
7524274 CTTATGTGAAATCAAATACG
66 CTTACATGAAATCAAATACG
*
7524294 ATGCCAA-GTCCCAGATGTGGTCTTACACGTAAATCATAAGT-T-GATGCCAATGTCCCAAACAT
1 ATGCCAACGTCCCAGATGTGGTCTTACACGTAAA-CA-AA-TATCGATGCCAATGTCCCAAACAC
7524356 GGTCTTACATGAAA
63 GGTCTTACATGAAA
7524370 ACACATATTG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 24 0.37
85 37 0.57
86 3 0.05
87 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (85 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACGTAAACAAATATCGATGCCAATGTCCCAAACACGGT
CTTACATGAAATCAAATACG
Found at i:7525715 original size:18 final size:18
Alignment explanation
Indices: 7525671--7525715 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
7525661 AAATAATAAG
7525671 TAATTAAATTAATTAAAA
1 TAATTAAATTAATTAAAA
* *
7525689 TAAGTAAATT-ATTTAAA
1 TAATTAAATTAATTAAAA
7525706 TAATTCAAAT
1 TAATT-AAAT
7525716 ATAGTAGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (18 bp):
TAATTAAATTAATTAAAA
Found at i:7526277 original size:163 final size:163
Alignment explanation
Indices: 7526104--7526431 Score: 656
Period size: 163 Copynumber: 2.0 Consensus size: 163
7526094 ATTCATTTAA
7526104 AAACTTTTTTACTAAAATTTAGTATTCTTATATAAATATGATAACTTTTATTATCAAGTAAATTT
1 AAACTTTTTTACTAAAATTTAGTATTCTTATATAAATATGATAACTTTTATTATCAAGTAAATTT
7526169 AAAATTAATTATTTTAGAAAAATTAAAATTCATATTGATAAATGTAATAAATTTTATAAATAAAA
66 AAAATTAATTATTTTAGAAAAATTAAAATTCATATTGATAAATGTAATAAATTTTATAAATAAAA
7526234 AATATTTAAAATTATAAATCCAACAACGTAGTG
131 AATATTTAAAATTATAAATCCAACAACGTAGTG
7526267 AAACTTTTTTACTAAAATTTAGTATTCTTATATAAATATGATAACTTTTATTATCAAGTAAATTT
1 AAACTTTTTTACTAAAATTTAGTATTCTTATATAAATATGATAACTTTTATTATCAAGTAAATTT
7526332 AAAATTAATTATTTTAGAAAAATTAAAATTCATATTGATAAATGTAATAAATTTTATAAATAAAA
66 AAAATTAATTATTTTAGAAAAATTAAAATTCATATTGATAAATGTAATAAATTTTATAAATAAAA
7526397 AATATTTAAAATTATAAATCCAACAACGTAGTG
131 AATATTTAAAATTATAAATCCAACAACGTAGTG
7526430 AA
1 AA
7526432 CAACAAAGGC
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
163 165 1.00
ACGTcount: A:0.48, C:0.06, G:0.05, T:0.40
Consensus pattern (163 bp):
AAACTTTTTTACTAAAATTTAGTATTCTTATATAAATATGATAACTTTTATTATCAAGTAAATTT
AAAATTAATTATTTTAGAAAAATTAAAATTCATATTGATAAATGTAATAAATTTTATAAATAAAA
AATATTTAAAATTATAAATCCAACAACGTAGTG
Found at i:7528009 original size:21 final size:21
Alignment explanation
Indices: 7527985--7528024 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7527975 TACAATCCTA
7527985 TTAAAAATAAT-TTATTAAATC
1 TTAAAAA-AATCTTATTAAATC
*
7528006 TTAATAAAATCTTATTAAA
1 TTAAAAAAATCTTATTAAA
7528025 CCAAACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAAAAAAATCTTATTAAATC
Found at i:7528013 original size:24 final size:26
Alignment explanation
Indices: 7527967--7528014 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
7527957 AGTTCATATA
*
7527967 AATTTATTTACAATCCTATTAAAAAT
1 AATTTATTTACAATCCTAATAAAAAT
*
7527993 AATTTA-TTA-AATCTTAATAAAA
1 AATTTATTTACAATCCTAATAAAA
7528015 TCTTATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 3 0.15
26 6 0.30
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (26 bp):
AATTTATTTACAATCCTAATAAAAAT
Found at i:7528701 original size:23 final size:23
Alignment explanation
Indices: 7528670--7528738 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
7528660 GAAATTATAA
* *
7528670 TAATTCCATCAAAATTAGCAACT
1 TAATACCATCAACATTAGCAACT
7528693 TAATACCATCAACATTAGCAACT
1 TAATACCATCAACATTAGCAACT
7528716 TAATACCATCAACATTAGCAACT
1 TAATACCATCAACATTAGCAACT
7528739 ATATATTCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.43, C:0.25, G:0.04, T:0.28
Consensus pattern (23 bp):
TAATACCATCAACATTAGCAACT
Found at i:7532608 original size:6 final size:6
Alignment explanation
Indices: 7532562--7532589 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7532552 ATAGATTTAG
7532562 ATTCAC ATTCAC ATTCAC ATTCAC ATTC
1 ATTCAC ATTCAC ATTCAC ATTCAC ATTC
7532590 TGATTCAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.36
Consensus pattern (6 bp):
ATTCAC
Found at i:7533308 original size:15 final size:15
Alignment explanation
Indices: 7533272--7533311 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
7533262 AAAGAAAAGG
*
7533272 AAAAAGAA-AAGAAT
1 AAAAAGAATAAAAAT
7533286 -AAAA-AATAAAAAT
1 AAAAAGAATAAAAAT
7533299 AAAAAGAATAAAA
1 AAAAAGAATAAAA
7533312 TAATATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
12 2 0.09
13 9 0.41
14 4 0.18
15 7 0.32
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAAAGAATAAAAAT
Found at i:7533421 original size:27 final size:24
Alignment explanation
Indices: 7533366--7533413 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7533356 ATTTAACAAA
* **
7533366 CAAAATAAAATAATAATATTGTTT
1 CAAAAAAAAATAATAATATACTTT
7533390 CAAAAAAAAATAATAATAATACTT
1 CAAAAAAAAATAATAAT-ATACTT
7533414 CTCCAAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.31
Consensus pattern (24 bp):
CAAAAAAAAATAATAATATACTTT
Found at i:7535996 original size:43 final size:42
Alignment explanation
Indices: 7535922--7536026 Score: 140
Period size: 43 Copynumber: 2.5 Consensus size: 42
7535912 GAGATTACGC
* *
7535922 GTAAGACCATATCTGGGATATGGCATCGATATTAGACTT-CGT
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCCAT
* * *
7535964 GTAAGACTATAGCTGGGCTATTGGCATCGATATGAGATTCCAT
1 GTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTCCAT
7536007 GTAAGACCATATCTGGGATA
1 GTAAGACCATATCTGGGATA
7536027 CGACATTGGT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 19 0.36
43 34 0.64
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGGCATCGATATGAGATTCCAT
Found at i:7543011 original size:46 final size:45
Alignment explanation
Indices: 7542902--7543115 Score: 166
Period size: 46 Copynumber: 4.6 Consensus size: 45
7542892 GTAAGGTGCT
* * * * *
7542902 GATGCCATGTCCCAGACATGGTTTTACACTGAC-ACATCTCGTA-GTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTACGTCCCG-AGGCC
* *
7542948 GATGTATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TACGTCCCGAGGCC
* * * * * *
7542994 GATGCATGTCCCAGACATGTCTTACTCTAGCTTTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TACGTCCCGAGGCC
* * *
7543040 AATGCTATGTCCCAGACATGGTCTTACACTGGCT-C-TCACAATGTGGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCTACGTC-C--CGAGGCC
7543088 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
7543116 AGCTCGCATA
Statistics
Matches: 136, Mismatches: 24, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 64 0.47
47 27 0.20
48 18 0.13
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTACGTCCCGAGGCC
Found at i:7543500 original size:30 final size:30
Alignment explanation
Indices: 7543459--7543516 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7543449 AAATTCACAT
* * *
7543459 CTTTGGTAAAATGATCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
7543489 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
7543517 TATTTGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:7547727 original size:40 final size:40
Alignment explanation
Indices: 7547644--7547986 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
7547634 TTGAATGCTG
* * * * * *
7547644 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
7547684 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
7547724 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
7547764 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
7547804 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
7547844 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
7547884 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
7547924 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
7547963 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
7547987 TGAACGAGGA
Statistics
Matches: 281, Mismatches: 19, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.12
40 238 0.85
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:7554846 original size:80 final size:79
Alignment explanation
Indices: 7554762--7554933 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
7554752 GGACTAAGAT
*
7554762 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
7554826 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
7554842 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
7554907 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
7554921 CCGAAGGCATTTG
1 CCGAAGGCATTTG
7554934 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:7554913 original size:39 final size:39
Alignment explanation
Indices: 7554709--7554931 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
7554699 TTGAATGCTG
* * * * *
7554709 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
7554749 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
7554788 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
7554829 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
7554869 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
7554908 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
7554932 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:7554951 original size:79 final size:80
Alignment explanation
Indices: 7554789--7554966 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
7554779 AGATACAAAT
* * * *
7554789 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
7554854 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
7554869 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
7554933 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
7554948 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
7554967 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:7569174 original size:301 final size:301
Alignment explanation
Indices: 7568632--7569233 Score: 1186
Period size: 301 Copynumber: 2.0 Consensus size: 301
7568622 TTTTGTCTTA
7568632 TAGTGTCGTCCAGCTTGCACAGGAGTCAAGGATCGTTGAAGATCTGCCTGCACTATCAATATTTT
1 TAGTGTCGTCCAGCTTGCACAGGAGTCAAGGATCGTTGAAGATCTGCCTGCACTATCAATATTTT
7568697 TGGGTATTTGAACTAAACATTTTGAATTATGGCATGTATAGTAGACTTAGTTATTTTGTTACGTG
66 TGGGTATTTGAACTAAACATTTTGAATTATGGCATGTATAGTAGACTTAGTTATTTTGTTACGTG
*
7568762 TCATAATTGTCTAGGTCTTAAAATATTAAGTATAGTATTTGACCGATTATTTTGTTCGAAGCCTT
131 TCATAATTGTCTAGGTCTTAAAATATTAAGTATAGTATTTAACCGATTATTTTGTTCGAAGCCTT
7568827 TGAAATTGGCTAATATTATTAAAGGCATATGTTATAATGATTCATGATCTAATTGTATGCCATAT
196 TGAAATTGGCTAATATTATTAAAGGCATATGTTATAATGATTCATGATCTAATTGTATGCCATAT
7568892 TTTTTTTGTTTTGGTTTTATTTAATGGTATGTATTATGATT
261 TTTTTTTGTTTTGGTTTTATTTAATGGTATGTATTATGATT
7568933 TAGTGTCGTCCAGCTTGCACAGGAGTCAAGGATCGTTGAAGATCTGCCTGCACTATCAATATTTT
1 TAGTGTCGTCCAGCTTGCACAGGAGTCAAGGATCGTTGAAGATCTGCCTGCACTATCAATATTTT
7568998 TGGGTATTTGAACTAAACATTTTGAATTATGGCATGTATAGTAGACTTAGTTATTTTGTTACGTG
66 TGGGTATTTGAACTAAACATTTTGAATTATGGCATGTATAGTAGACTTAGTTATTTTGTTACGTG
*
7569063 TCATAATTGTCTAGGTCTTAAAATATTAATTATAGTATTTAACCGATTATTTTGTTCGAAGCCTT
131 TCATAATTGTCTAGGTCTTAAAATATTAAGTATAGTATTTAACCGATTATTTTGTTCGAAGCCTT
7569128 TGAAATTGGCTAATATTATTAAAGGCATATGTTATAATGATTCATGATCTAATTGTATGCCATAT
196 TGAAATTGGCTAATATTATTAAAGGCATATGTTATAATGATTCATGATCTAATTGTATGCCATAT
7569193 TTTTTTTGTTTTGGTTTTATTTAATGGTATGTATTATGATT
261 TTTTTTTGTTTTGGTTTTATTTAATGGTATGTATTATGATT
7569234 CGGTAATACC
Statistics
Matches: 299, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
301 299 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (301 bp):
TAGTGTCGTCCAGCTTGCACAGGAGTCAAGGATCGTTGAAGATCTGCCTGCACTATCAATATTTT
TGGGTATTTGAACTAAACATTTTGAATTATGGCATGTATAGTAGACTTAGTTATTTTGTTACGTG
TCATAATTGTCTAGGTCTTAAAATATTAAGTATAGTATTTAACCGATTATTTTGTTCGAAGCCTT
TGAAATTGGCTAATATTATTAAAGGCATATGTTATAATGATTCATGATCTAATTGTATGCCATAT
TTTTTTTGTTTTGGTTTTATTTAATGGTATGTATTATGATT
Found at i:7578394 original size:19 final size:19
Alignment explanation
Indices: 7578370--7578406 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
7578360 CTCTGAATTA
7578370 AGAACTATTAATTTTCTCG
1 AGAACTATTAATTTTCTCG
7578389 AGAACTATTAATTTTCTC
1 AGAACTATTAATTTTCTC
7578407 TAAAACTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.43
Consensus pattern (19 bp):
AGAACTATTAATTTTCTCG
Found at i:7578413 original size:19 final size:19
Alignment explanation
Indices: 7578372--7578414 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
7578362 CTGAATTAAG
*
7578372 AACTATTAATTTTCTCGAG
1 AACTATTAATTTTCTCGAA
*
7578391 AACTATTAATTTTCTCTAA
1 AACTATTAATTTTCTCGAA
7578410 AACTA
1 AACTA
7578415 AACTCACATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (19 bp):
AACTATTAATTTTCTCGAA
Found at i:7595883 original size:39 final size:40
Alignment explanation
Indices: 7595766--7595988 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
7595756 GCTCCTCGTT
* *
7595766 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
7595806 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
7595846 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
7595885 CAAATGCCTTC-GGACCTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
7595924 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
7595965 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
7595989 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:7595936 original size:78 final size:80
Alignment explanation
Indices: 7595766--7595988 Score: 244
Period size: 79 Copynumber: 2.8 Consensus size: 80
7595756 GCTCCTCGTT
* *
7595766 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACCTAACCCGG
*
7595831 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* *
7595846 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGACCTAGCCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGACCTAACCC
*
7595907 GGAATTAGTATCTCGCA
64 GGAATTAGTAACTCGCA
* * * * * * *
7595924 CAAATGCCTTC-GGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGT-AATTCGCACAAATGCCTTCGGGACCTAACCC
7595986 GGA
64 GGA
7595989 CATCATTCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
77 2 0.02
78 44 0.35
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACCTAACCCGG
AATTAGTAACTCGCA
Found at i:7595949 original size:118 final size:119
Alignment explanation
Indices: 7595766--7595988 Score: 289
Period size: 118 Copynumber: 1.9 Consensus size: 119
7595756 GCTCCTCGTT
*
7595766 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
*
7595831 AT-TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATT-GTAACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* **
7595885 CAAATGCCTTC-GGACCTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
7595946 CGGATATTGTCACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGA
7595989 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
117 15 0.16
118 59 0.64
119 18 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATTGTAACTTAGCACAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:7602187 original size:20 final size:16
Alignment explanation
Indices: 7602146--7602182 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
7602136 TCTGAATTAC
7602146 CAGTCCAGCCTAAATT
1 CAGTCCAGCCTAAATT
7602162 CAGTCCAGCCTAAATT
1 CAGTCCAGCCTAAATT
7602178 CAGTC
1 CAGTC
7602183 AGTCCTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (16 bp):
CAGTCCAGCCTAAATT
Found at i:7604760 original size:30 final size:30
Alignment explanation
Indices: 7604712--7604770 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
7604702 TCCTTGACTC
7604712 AAACTTTTAAAAAATTACA-TTTTTGCCCCT
1 AAACTTTTAAAAAATTACACTTTTT-CCCCT
* * *
7604742 AAACTTTTACATATTTACACTTTTTCCCC
1 AAACTTTTAAAAAATTACACTTTTTCCCC
7604771 AAGGCTCGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.42
Consensus pattern (30 bp):
AAACTTTTAAAAAATTACACTTTTTCCCCT
Found at i:7607348 original size:50 final size:50
Alignment explanation
Indices: 7607272--7607400 Score: 197
Period size: 50 Copynumber: 2.6 Consensus size: 50
7607262 GCATAGTTGG
* * *
7607272 CTGCACTTAGTACTACACATGCGACCTAACAATCTAG-TACATGTAGCAGC
1 CTGCACTTAGTACTACACACGTGACCTAACAATC-AGATACACGTAGCAGC
* *
7607322 CTGCACTTAGTACTACACACGTGACCTAACCATCAGATACACGTAGTAGC
1 CTGCACTTAGTACTACACACGTGACCTAACAATCAGATACACGTAGCAGC
7607372 CTGCACTTAGTACTACACACGTGACCTAA
1 CTGCACTTAGTACTACACACGTGACCTAA
7607401 AACTATTTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
49 2 0.03
50 71 0.97
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (50 bp):
CTGCACTTAGTACTACACACGTGACCTAACAATCAGATACACGTAGCAGC
Found at i:7617906 original size:15 final size:15
Alignment explanation
Indices: 7617886--7617926 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7617876 TTGTAATTTG
*
7617886 GATTTCCTTATCATC
1 GATTTCTTTATCATC
* *
7617901 GATTTCTTTATCTTG
1 GATTTCTTTATCATC
7617916 GATTTCTTTAT
1 GATTTCTTTAT
7617927 TCTGGGCTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.10, T:0.56
Consensus pattern (15 bp):
GATTTCTTTATCATC
Found at i:7617964 original size:15 final size:15
Alignment explanation
Indices: 7617883--7617965 Score: 53
Period size: 15 Copynumber: 5.5 Consensus size: 15
7617873 GTATTGTAAT
7617883 TTGGATTTC-CTTATC
1 TTGGATTTCTC-TATC
* * *
7617898 ATCGATTTCTTTATC
1 TTGGATTTCTCTATC
*
7617913 TTGGATTTCTTTAT-
1 TTGGATTTCTCTATC
** *
7617927 TCTGGGCTTCTCTGTC
1 T-TGGATTTCTCTATC
**
7617943 TCAGATTTCTCTATC
1 TTGGATTTCTCTATC
7617958 TTGGATTT
1 TTGGATTT
7617966 TCTGATTGTC
Statistics
Matches: 49, Mismatches: 16, Indels: 6
0.69 0.23 0.08
Matches are distributed among these distances:
14 1 0.02
15 47 0.96
16 1 0.02
ACGTcount: A:0.13, C:0.19, G:0.14, T:0.53
Consensus pattern (15 bp):
TTGGATTTCTCTATC
Found at i:7620421 original size:27 final size:27
Alignment explanation
Indices: 7620391--7620444 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
7620381 TGTCATGTGA
* *
7620391 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
7620418 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
7620445 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:7628926 original size:26 final size:25
Alignment explanation
Indices: 7628887--7628935 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
7628877 AAATATAATT
7628887 TTATATTTACTATTTAATTTAATCA
1 TTATATTTACTATTTAATTTAATCA
*
7628912 TTATATTTTATTATTTAATTTAAT
1 TTATA-TTTACTATTTAATTTAAT
7628936 TATGCATGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (25 bp):
TTATATTTACTATTTAATTTAATCA
Found at i:7628932 original size:13 final size:13
Alignment explanation
Indices: 7628897--7628938 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
7628887 TTATATTTAC
7628897 TATTTAATTTAAT
1 TATTTAATTTAAT
* *
7628910 CA-TTATATTTTAT
1 TATTTA-ATTTAAT
7628923 TATTTAATTTAAT
1 TATTTAATTTAAT
7628936 TAT
1 TAT
7628939 GCATGGCCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
12 3 0.13
13 17 0.74
14 3 0.13
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTTAATTTAAT
Found at i:7650607 original size:34 final size:33
Alignment explanation
Indices: 7650529--7650607 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 33
7650519 TACTAAAATT
* * *
7650529 GGCTAAGCCCATACTGATACTGTTACTGTATTG
1 GGCTAAGCCCACACTGATACCGTGACTGTATTG
*
7650562 GGCCAAGGCCCACACTGATACCGTGACTG-ATATG
1 GGCTAA-GCCCACACTGATACCGTGACTGTAT-TG
7650596 GGCTTAAGCCCA
1 GGC-TAAGCCCA
7650608 GATTGTTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
33 7 0.18
34 29 0.76
35 2 0.05
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (33 bp):
GGCTAAGCCCACACTGATACCGTGACTGTATTG
Found at i:7654144 original size:43 final size:42
Alignment explanation
Indices: 7654097--7654181 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 42
7654087 AGGGATTTTC
** **
7654097 GTTGATTGTTGCACCTCTGACTAAGTTGTTGCGTAAAGAGGTA
1 GTTGATTACTGCACCTCTGACTAAGTTACTGCGTAAAG-GGTA
7654140 GTTGATTACTGCACCTCTGACTAAGTTACTGCGTAAAGGGTA
1 GTTGATTACTGCACCTCTGACTAAGTTACTGCGTAAAGGGTA
7654182 CCGTTTGACT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
42 4 0.11
43 34 0.89
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
GTTGATTACTGCACCTCTGACTAAGTTACTGCGTAAAGGGTA
Found at i:7658136 original size:19 final size:19
Alignment explanation
Indices: 7658114--7658162 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 19
7658104 TTAAAATGGG
* *
7658114 TCGTGTGGGCCCCATGAGC
1 TCGTGTAGGCCCCACGAGC
7658133 TC--GTAGGCCCCACGAGC
1 TCGTGTAGGCCCCACGAGC
7658150 TC--GTAGGCCCCAC
1 TCGTGTAGGCCCCAC
7658163 ATGGGTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 26 0.93
19 2 0.07
ACGTcount: A:0.14, C:0.39, G:0.31, T:0.16
Consensus pattern (19 bp):
TCGTGTAGGCCCCACGAGC
Found at i:7658143 original size:17 final size:17
Alignment explanation
Indices: 7658121--7658162 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
7658111 GGGTCGTGTG
*
7658121 GGCCCCATGAGCTCGTA
1 GGCCCCACGAGCTCGTA
7658138 GGCCCCACGAGCTCGTA
1 GGCCCCACGAGCTCGTA
7658155 GGCCCCAC
1 GGCCCCAC
7658163 ATGGGTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.43, G:0.29, T:0.12
Consensus pattern (17 bp):
GGCCCCACGAGCTCGTA
Found at i:7663155 original size:15 final size:17
Alignment explanation
Indices: 7663125--7663156 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
7663115 TTGACACTTG
7663125 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
7663142 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
7663157 AAACATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:7666990 original size:20 final size:20
Alignment explanation
Indices: 7666965--7667107 Score: 114
Period size: 20 Copynumber: 7.2 Consensus size: 20
7666955 TGGTACTCAC
*
7666965 CTTATAATTTTTTATATTCT
1 CTTATAATTTTTTGTATTCT
* *
7666985 CTTATAATTTTTGGTACTCT
1 CTTATAATTTTTTGTATTCT
* **
7667005 CTCATGTTTTTTTAGTACTTCAT
1 CTTATAATTTTTT-GTA-TTC-T
* *
7667028 C--ATAATTTTTGGTATCCT
1 CTTATAATTTTTTGTATTCT
* *
7667046 CTCATAATTTTTTGTATTAT
1 CTTATAATTTTTTGTATTCT
* *
7667066 -TTCATAATTATTTGTAATCT
1 CTT-ATAATTTTTTGTATTCT
7667086 CTTA-AATTTTTTGTATTCT
1 CTTATAATTTTTTGTATTCT
7667105 CTT
1 CTT
7667108 GTATTTTTGG
Statistics
Matches: 95, Mismatches: 21, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
18 2 0.02
19 19 0.20
20 58 0.61
21 12 0.13
22 2 0.02
23 2 0.02
ACGTcount: A:0.22, C:0.13, G:0.06, T:0.58
Consensus pattern (20 bp):
CTTATAATTTTTTGTATTCT
Found at i:7667057 original size:41 final size:39
Alignment explanation
Indices: 7666950--7667106 Score: 115
Period size: 41 Copynumber: 3.9 Consensus size: 39
7666940 TCCCTCATGT
* *
7666950 TTTTCTGGTACTCACCTTATAATTTTTTATATTCTCTTATAA
1 TTTT-TGGTACTC-TCTCATAATTTTTTATATTCTC-TATAA
**
7666992 TTTTTGGTACTCTCTCATGTTTTTTTAGTACTTCATC-ATAA
1 TTTTTGGTACTCTCTCATAATTTTTTA-TA-TTC-TCTATAA
* * *
7667033 TTTTTGGTA-TCCTCTCATAATTTTTTGTATTATTTCATAA
1 TTTTTGGTACT-CTCTCATAATTTTTTATATTCTCT-ATAA
* * *
7667073 TTATTT-GTAATCTCTTA-AATTTTTTGTATTCTCT
1 TT-TTTGGTACTCTCTCATAATTTTTTATATTCTCT
7667107 TGTATTTTTG
Statistics
Matches: 95, Mismatches: 12, Indels: 19
0.75 0.10 0.15
Matches are distributed among these distances:
38 1 0.01
39 17 0.18
40 28 0.29
41 40 0.42
42 7 0.07
43 2 0.02
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.57
Consensus pattern (39 bp):
TTTTTGGTACTCTCTCATAATTTTTTATATTCTCTATAA
Found at i:7667059 original size:62 final size:61
Alignment explanation
Indices: 7666929--7667057 Score: 152
Period size: 62 Copynumber: 2.1 Consensus size: 61
7666919 ACAAACCAAT
* * * * *
7666929 ATTTTTGGCACTCCCTCATGTTTTTCTGGTACTCACCTTATAATTTTTTATATTCTCTTATA
1 ATTTTTGGCACTCCCTCATGTTTTTCTAGTACTCA-CTCATAATTTTTGATATCCTCTCATA
* * * *
7666991 ATTTTTGGTACTCTCTCATGTTTTTTTAGTACTTCA-TCATAATTTTTGGTATCCTCTCATA
1 ATTTTTGGCACTCCCTCATGTTTTTCTAGTAC-TCACTCATAATTTTTGATATCCTCTCATA
7667052 ATTTTT
1 ATTTTT
7667058 TGTATTATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
61 26 0.46
62 28 0.49
63 3 0.05
ACGTcount: A:0.19, C:0.19, G:0.09, T:0.53
Consensus pattern (61 bp):
ATTTTTGGCACTCCCTCATGTTTTTCTAGTACTCACTCATAATTTTTGATATCCTCTCATA
Found at i:7667115 original size:19 final size:19
Alignment explanation
Indices: 7667071--7667107 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7667061 ATTATTTCAT
*
7667071 AATTATTTGTAATCTCTTA
1 AATTTTTTGTAATCTCTTA
*
7667090 AATTTTTTGTATTCTCTT
1 AATTTTTTGTAATCTCTT
7667108 GTATTTTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.11, G:0.05, T:0.59
Consensus pattern (19 bp):
AATTTTTTGTAATCTCTTA
Found at i:7667385 original size:18 final size:17
Alignment explanation
Indices: 7667358--7667391 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7667348 TTGGTTGGTC
7667358 TTATTAAATTTGTTTTAT
1 TTATTAAATTT-TTTTAT
*
7667376 TTATTTAATTTTTTTA
1 TTATTAAATTTTTTTA
7667392 AAATAATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TTATTAAATTTTTTTAT
Found at i:7669010 original size:20 final size:21
Alignment explanation
Indices: 7668968--7669010 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
7668958 GTTCATGGTT
* *
7668968 TTAGGGGTTATGTTATTAGTGA
1 TTAGAGGTTATG-TATTAATGA
7668990 TTAGAGGTTATG-ATTAATGA
1 TTAGAGGTTATGTATTAATGA
7669010 T
1 T
7669011 AAAAAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (21 bp):
TTAGAGGTTATGTATTAATGA
Found at i:7669541 original size:15 final size:15
Alignment explanation
Indices: 7669521--7669552 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7669511 TTTAATTTAG
7669521 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
7669536 AAGATAAATATATAT
1 AAGATAAATATAAAT
7669551 AA
1 AA
7669553 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:7671555 original size:39 final size:39
Alignment explanation
Indices: 7671501--7671580 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
7671491 GATATGACTA
* *
7671501 TCTTAAATTTGTTATTTTGCATGATTATTTGAGATCTGC
1 TCTTAAATTTGTTATTCTGCATGACTATTTGAGATCTGC
7671540 TCTTAAATTTGTTATTCTGCATGACTATTTGAGATCTGC
1 TCTTAAATTTGTTATTCTGCATGACTATTTGAGATCTGC
7671579 TC
1 TC
7671581 CTGTCAATGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.14, G:0.15, T:0.49
Consensus pattern (39 bp):
TCTTAAATTTGTTATTCTGCATGACTATTTGAGATCTGC
Found at i:7673125 original size:62 final size:60
Alignment explanation
Indices: 7673028--7673155 Score: 229
Period size: 62 Copynumber: 2.1 Consensus size: 60
7673018 TGGGCCTAAT
*
7673028 TTTATTTCCATGTTCTTTTGTAGAAATTAGTTATGAACAAGGTAATATATATATAGATATAG
1 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGT-A-ATATATATAGATATAG
7673090 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
1 TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
7673150 TTTATT
1 TTTATT
7673156 AATGAACAAG
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
60 22 0.34
61 1 0.02
62 42 0.65
ACGTcount: A:0.34, C:0.07, G:0.13, T:0.45
Consensus pattern (60 bp):
TTTATTTCCATGTTCTTTTGTACAAATTAGTTATGAACAAGGTAATATATATAGATATAG
Found at i:7673727 original size:105 final size:104
Alignment explanation
Indices: 7673482--7673914 Score: 626
Period size: 105 Copynumber: 4.2 Consensus size: 104
7673472 ATTTTAAAAT
* * * * *
7673482 TTTTATTTTATTTTGAAATTATCGAATTAAATTAAAATGTATTTAAAGTTTTA-TTTGAATATTT
1 TTTT-TTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* **
7673546 TATTTGATTTTAATTTAATCACGGAAAATATTTTGTCTA-
65 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* *
7673585 TTTTTATTT-TTTTTAAATTACCTAATTAAATTTAATTGTCTTTAAAGTTTTATTTTAAATATTT
1 TTTTT-TTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
7673649 TACTTGATTTTAATTTACTCACTAAAAATATTTTTTCTAC
65 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
7673689 TTTTTTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTTTTT-ATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
7673754 TA-TTAGATTTTAATTTAATCACAAAAAATATTTTTTCTAC
65 TACTT-GATTTTAATTTAATCACTAAAAATATTTTGTCTAC
* *
7673794 TTTTATTTTATTTTTAAATTACCTAATTAAATTAATTTTTATTTAAAGTTTTATTTTAAATATTT
1 TTTT-TTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
7673859 TACTTGATTTTAATTTAATCACTAAAAATA--TTGTCTAC
65 TACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
*
7673897 TTTATTTTATTTTTAAAT
1 TTTTTTTTATTTTTAAAT
7673915 ATTTTATTTT
Statistics
Matches: 301, Mismatches: 21, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
102 52 0.17
103 64 0.21
104 7 0.02
105 172 0.57
106 6 0.02
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (104 bp):
TTTTTTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTT
ACTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
Found at i:7674031 original size:9 final size:9
Alignment explanation
Indices: 7674017--7674302 Score: 82
Period size: 9 Copynumber: 31.7 Consensus size: 9
7674007 TCCCATCAAC
7674017 AACTTACAT
1 AACTTACAT
7674026 AACTTACAT
1 AACTTACAT
7674035 AA--TACAT
1 AACTTACAT
* *
7674042 AAATATATAT
1 AACT-TACAT
*
7674052 ATCTT--AT
1 AACTTACAT
7674059 -A-TTACAT
1 AACTTACAT
*
7674066 AAATTACAT
1 AACTTACAT
** * *
7674075 AAGATAAAC
1 AACTTACAT
7674084 AACTTACAT
1 AACTTACAT
*
7674093 AATTTACAT
1 AACTTACAT
*
7674102 AACTTACGT
1 AACTTACAT
7674111 AAC--ACAT
1 AACTTACAT
*
7674118 AAGTATACATT
1 AACT-TACA-T
*
7674129 ATATCGTACAT
1 A-A-CTTACAT
*
7674140 AATTTACAT
1 AACTTACAT
7674149 AA-TT-CGGAT
1 AACTTAC--AT
7674158 AACTTACAT
1 AACTTACAT
*
7674167 AATTTACAT
1 AACTTACAT
7674176 AACTTACAT
1 AACTTACAT
7674185 ATA-TAATACAT
1 A-ACT--TACAT
*
7674196 AAATATATATCAT
1 -AA-CT-TA-CAT
* *
7674209 ATCGTACAT
1 AACTTACAT
*
7674218 AATTTACAT
1 AACTTACAT
7674227 AA-TT-CGGAT
1 AACTTAC--AT
*
7674236 AACTTACAC
1 AACTTACAT
*
7674245 AATTTACAT
1 AACTTACAT
7674254 AACTTACAT
1 AACTTACAT
7674263 AA--TACAT
1 AACTTACAT
* *
7674270 AA-ATATAT
1 AACTTACAT
* *
7674278 ATCATATCAT
1 AACTTA-CAT
7674288 AACTTACAT
1 AACTTACAT
*
7674297 AGCTTA
1 AACTTA
7674303 ATTATACTTA
Statistics
Matches: 207, Mismatches: 39, Indels: 62
0.67 0.13 0.20
Matches are distributed among these distances:
5 2 0.01
7 25 0.12
8 10 0.05
9 121 0.58
10 23 0.11
11 12 0.06
12 10 0.05
13 4 0.02
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:7674105 original size:18 final size:18
Alignment explanation
Indices: 7674060--7674265 Score: 110
Period size: 18 Copynumber: 11.0 Consensus size: 18
7674050 ATATCTTATA
* *
7674060 TTACATAAATTACATAAG
1 TTACATAACTTACATAAT
* * *
7674078 ATAAACAACTTACATAAT
1 TTACATAACTTACATAAT
*
7674096 TTACATAACTTACGTAA-
1 TTACATAACTTACATAAT
* *
7674113 -CACATAAGTATACATTATAT
1 TTACATAACT-TACA-TA-AT
* *
7674133 CGTACATAATTTACATAAT
1 -TTACATAACTTACATAAT
***
7674152 TCGGATAACTTACATAAT
1 TTACATAACTTACATAAT
7674170 TTACATAACTTACATATAT
1 TTACATAACTTACATA-AT
* * *
7674189 AATACATAAATATATATCATAT
1 -TTACATAACT-TACAT-A-AT
* *
7674211 CGTACATAATTTACATAAT
1 -TTACATAACTTACATAAT
*** *
7674230 TCGGATAACTTACACAAT
1 TTACATAACTTACATAAT
7674248 TTACATAACTTACATAAT
1 TTACATAACTTACATAAT
7674266 ACATAAATAT
Statistics
Matches: 139, Mismatches: 39, Indels: 20
0.70 0.20 0.10
Matches are distributed among these distances:
16 7 0.05
17 3 0.02
18 80 0.58
19 7 0.05
20 11 0.08
21 12 0.09
22 19 0.14
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.35
Consensus pattern (18 bp):
TTACATAACTTACATAAT
Found at i:7674223 original size:78 final size:74
Alignment explanation
Indices: 7674020--7674285 Score: 336
Period size: 74 Copynumber: 3.5 Consensus size: 74
7674010 CATCAACAAC
* ** * * ** *
7674020 TTACATAACTTACATAATACATAAATATATATATCTTATATTACATAAATTACATAAGAT-AAAC
1 TTACATAACTTACATAATACAT-AA-ATATATATCATATCGTACATAATTTACATAA-TTCGGAT
7674084 AACTTACATAAT
63 AACTTACATAAT
* * * * *
7674096 TTACATAACTTACGTAACACATAAGTATACATTATATCGTACATAATTTACATAATTCGGATAAC
1 TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
7674161 TTACATAAT
66 TTACATAAT
7674170 TTACATAACTTACATATATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGA
1 TTACATAACTTAC----ATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGA
*
7674235 TAACTTACACAAT
62 TAACTTACATAAT
7674248 TTACATAACTTACATAATACATAAATATATATCATATC
1 TTACATAACTTACATAATACATAAATATATATCATATC
7674286 ATAACTTACA
Statistics
Matches: 166, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
73 1 0.01
74 75 0.45
75 2 0.01
76 20 0.12
78 68 0.41
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (74 bp):
TTACATAACTTACATAATACATAAATATATATCATATCGTACATAATTTACATAATTCGGATAAC
TTACATAAT
Found at i:7676036 original size:12 final size:12
Alignment explanation
Indices: 7676019--7676044 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7676009 AAGATCGAGG
7676019 GATGAATCTGAT
1 GATGAATCTGAT
7676031 GATGAATCTGAT
1 GATGAATCTGAT
7676043 GA
1 GA
7676045 AGAGGATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (12 bp):
GATGAATCTGAT
Found at i:7678151 original size:143 final size:143
Alignment explanation
Indices: 7677962--7678247 Score: 554
Period size: 143 Copynumber: 2.0 Consensus size: 143
7677952 ACACTGACCT
7677962 TTGTGCATTACGACCTGGATATCTCCCTGTACAGAGCTTCAATACTGATGCCGTTTATTTCTATA
1 TTGTGCATTACGACCTGGATATCTCCCTGTACAGAGCTTCAATACTGATGCCGTTTATTTCTATA
7678027 GAAACTAGACTCAAAGAGGAATCTATACATATATGACATGGCTCCTAATTATCTCTGGTTAATTC
66 GAAACTAGACTCAAAGAGGAATCTATACATATATGACATGGCTCCTAATTATCTCTGGTTAATTC
7678092 ATAATAAATTTAC
131 ATAATAAATTTAC
7678105 TTGTGCATTACGACCTGGATATCTCCCTGTACAGAGCTTCAATACTGATGCCGTTTATTTCTATA
1 TTGTGCATTACGACCTGGATATCTCCCTGTACAGAGCTTCAATACTGATGCCGTTTATTTCTATA
* *
7678170 GAAACTAGACTCAAAGAGGAATCTATACATATATGGCATGTCTCCTAATTATCTCTGGTTAATTC
66 GAAACTAGACTCAAAGAGGAATCTATACATATATGACATGGCTCCTAATTATCTCTGGTTAATTC
7678235 ATAATAAATTTAC
131 ATAATAAATTTAC
7678248 AAAGTCGGAA
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 141 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (143 bp):
TTGTGCATTACGACCTGGATATCTCCCTGTACAGAGCTTCAATACTGATGCCGTTTATTTCTATA
GAAACTAGACTCAAAGAGGAATCTATACATATATGACATGGCTCCTAATTATCTCTGGTTAATTC
ATAATAAATTTAC
Found at i:7678308 original size:57 final size:57
Alignment explanation
Indices: 7678235--7678348 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
7678225 TGGTTAATTC
7678235 ATAATAAATTTACAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCG
1 ATAATAAATTTACAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCG
*
7678292 ATAATAAATTTACAAAGTCGGAACAGGGAACCCCGAAACCGTTCTGGCCCTGTCTCG
1 ATAATAAATTTACAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCG
7678349 CAAGAACCTG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (57 bp):
ATAATAAATTTACAAAGTCGGAACAGGGAACCCAGAAACCGTTCTGGCCCTGTCTCG
Found at i:7680309 original size:27 final size:27
Alignment explanation
Indices: 7680279--7680454 Score: 210
Period size: 27 Copynumber: 6.5 Consensus size: 27
7680269 ATATCGAGTC
* * * *
7680279 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
7680306 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7680333 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7680361 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7680388 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7680415 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7680442 CGCACACTTAGTG
1 CGCACACTTAGTG
7680455 TTGTACAATT
Statistics
Matches: 131, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7680418 original size:82 final size:81
Alignment explanation
Indices: 7680300--7680454 Score: 240
Period size: 82 Copynumber: 1.9 Consensus size: 81
7680290 TGCTATATAA
*
7680300 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7680365 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7680382 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7680446 CACTTAGTG
65 CACTTAGTG
7680455 TTGTACAATT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.78
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7682716 original size:29 final size:29
Alignment explanation
Indices: 7682653--7682720 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
7682643 TAATCACCCA
* *
7682653 CGCACACTCAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTACCATGCACTTTAAACT
* **
7682682 CACACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTACCATGCACTTT-AAACT
7682711 CGCACACTTA
1 CGCACACTTA
7682721 CCTTTTTCCG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTACCATGCACTTTAAACT
Found at i:7682862 original size:29 final size:30
Alignment explanation
Indices: 7682823--7682901 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
7682813 CTTAATAATC
7682823 AACCGCGCACACTTAGTGCCATGTAC-TGTA
1 AACC-CGCACACTTAGTGCCATGTACATGTA
* *
7682853 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATGTA
7682882 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
7682902 ATCTCATGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 32 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATGTA
Found at i:7691663 original size:27 final size:27
Alignment explanation
Indices: 7691633--7691808 Score: 210
Period size: 27 Copynumber: 6.5 Consensus size: 27
7691623 ATATCGAGTC
* * * *
7691633 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
7691660 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7691687 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
7691715 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
7691742 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
7691769 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
7691796 CGCACACTTAGTG
1 CGCACACTTAGTG
7691809 TTGTACAATT
Statistics
Matches: 131, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 107 0.82
28 24 0.18
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:7691772 original size:82 final size:81
Alignment explanation
Indices: 7691654--7691808 Score: 240
Period size: 82 Copynumber: 1.9 Consensus size: 81
7691644 TGCTATATAA
*
7691654 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
7691719 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
7691736 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
7691800 CACTTAGTG
65 CACTTAGTG
7691809 TTGTACAATT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.78
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:7693196 original size:37 final size:37
Alignment explanation
Indices: 7693155--7693228 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
7693145 TAATACAACA
*
7693155 TGTTGGTGACATGTTTCCACCCATAGCATGGCCGGCC
1 TGTTGGAGACATGTTTCCACCCATAGCATGGCCGGCC
7693192 TGTTGGAGACATGTTTCCACCCATAGCATGGCCGGCC
1 TGTTGGAGACATGTTTCCACCCATAGCATGGCCGGCC
7693229 ACTACATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.18, C:0.30, G:0.27, T:0.26
Consensus pattern (37 bp):
TGTTGGAGACATGTTTCCACCCATAGCATGGCCGGCC
Found at i:7694051 original size:29 final size:29
Alignment explanation
Indices: 7693988--7694055 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
7693978 TAATCACCCA
* *
7693988 CGCACACTCAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTACCATGCACTTTAAACT
* **
7694017 CACACACTTAGTACCATGCA-TTTCAAGTT
1 CGCACACTTAGTACCATGCACTTT-AAACT
7694046 CGCACACTTA
1 CGCACACTTA
7694056 CCTTTTTCCG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTACCATGCACTTTAAACT
Found at i:7694197 original size:29 final size:30
Alignment explanation
Indices: 7694158--7694236 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
7694148 CTTAATAATC
7694158 AACCGCGCACACTTAGTGCCATGTAC-TGTA
1 AACC-CGCACACTTAGTGCCATGTACATGTA
* *
7694188 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATGTA
7694217 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
7694237 ATCTCATGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 32 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATGTA
Found at i:7694688 original size:100 final size:100
Alignment explanation
Indices: 7694574--7694860 Score: 338
Period size: 100 Copynumber: 3.0 Consensus size: 100
7694564 TTGCAAGATA
7694574 CCTATATATATATATAAATTTAATAATTCCATTTTTTTTTACAATCATCCTTGTTCAAGACATCC
1 CCTATATATATATATAAATTTAATAATTCCATTTTTTTTTACAATCATCCTTGTTCAAGACATCC
7694639 AAGTCTCAACTAATGTTCATATTATATCTCAAAGC
66 AAGTCTCAACTAATGTTCATATTATATCTCAAAGC
* * *
7694674 CCTATATATATATATAAATTTAATAATTCCA-TTTTTTTT----T-A--CTTGATTAAATAAAT-
1 CCTATATATATATATAAATTTAATAATTCCATTTTTTTTTACAATCATCCTTG-TTCAAGACATC
* * * ** **
7694730 -AAGT-T-TAGTAAT-TTAAT-TTACCT-TGCAAGATA
65 CAAGTCTCAACTAATGTTCATATTATATCT-CAA-AGC
7694762 CC--TATATATATATAAATTTAATAATTCCATTTTTTTTTACAATCATCCTTGTTCAAGACATCC
1 CCTATATATATATATAAATTTAATAATTCCATTTTTTTTTACAATCATCCTTGTTCAAGACATCC
7694825 AAGTCTCAACTAATGTTCATATTATATCTCAAAGC
66 AAGTCTCAACTAATGTTCATATTATATCTCAAAGC
7694860 C
1 C
7694861 AAATGTATTA
Statistics
Matches: 149, Mismatches: 20, Indels: 38
0.72 0.10 0.18
Matches are distributed among these distances:
86 28 0.19
87 15 0.10
88 7 0.05
89 5 0.03
90 1 0.01
91 5 0.03
92 5 0.03
93 14 0.09
94 5 0.03
95 5 0.03
96 1 0.01
97 5 0.03
98 6 0.04
99 15 0.10
100 32 0.21
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (100 bp):
CCTATATATATATATAAATTTAATAATTCCATTTTTTTTTACAATCATCCTTGTTCAAGACATCC
AAGTCTCAACTAATGTTCATATTATATCTCAAAGC
Found at i:7704577 original size:43 final size:43
Alignment explanation
Indices: 7704462--7704595 Score: 151
Period size: 43 Copynumber: 3.1 Consensus size: 43
7704452 GTGGGAAAGG
* * ***
7704462 CGCCGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCCACAAA
1 CGCCGCTAAAAGCCATCACTTTTAGCGGCGCTTTTTTAACAAA
* * *
7704505 TGCCACTAAAAGCCATCACTTTTGGCGGCGCTTTTTTAACAAA
1 CGCCGCTAAAAGCCATCACTTTTAGCGGCGCTTTTTTAACAAA
* * * *
7704548 CGCCGCTGAAAGGCATCACTTTTAGCGGCGTTTTTTTCAATAAA
1 CGCCGCTAAAAGCCATCACTTTTAGCGGCGCTTTTTT-AACAAA
7704592 CGCC
1 CGCC
7704596 ACAAATTTTT
Statistics
Matches: 75, Mismatches: 15, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
43 66 0.88
44 9 0.12
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (43 bp):
CGCCGCTAAAAGCCATCACTTTTAGCGGCGCTTTTTTAACAAA
Found at i:7708285 original size:21 final size:19
Alignment explanation
Indices: 7708259--7708439 Score: 79
Period size: 20 Copynumber: 9.1 Consensus size: 19
7708249 TAAAACATAC
7708259 GAGGAAGTACAAAAAATTAT
1 GAGGAA-TACAAAAAATTAT
7708279 GATGGAATA-AAAAAA--AT
1 GA-GGAATACAAAAAATTAT
* *
7708296 GAGGAAGTACTAAATATTCTAT
1 GAGGAA-TAC-AAAAAAT-TAT
* *
7708318 GA-AAATAACAAAAAATTAC
1 GAGGAAT-ACAAAAAATTAT
*
7708337 AAGGGAATACCAAAAAA-TAT
1 GA-GGAATA-CAAAAAATTAT
****
7708357 GAGGAAATACCAAAAAAACCC
1 GAGG-AATA-CAAAAAATTAT
* *
7708378 GAAGAAATACCAAAAATTAT
1 G-AGGAATACAAAAAATTAT
7708398 GAGGGAATACTAAAAAA-TAT
1 GA-GGAATAC-AAAAAATTAT
7708418 -ATGGAAGTACAAAAAATTAT
1 GA-GGAA-TACAAAAAATTAT
7708438 GA
1 GA
7708440 AAGGATGCCA
Statistics
Matches: 120, Mismatches: 22, Indels: 37
0.67 0.12 0.21
Matches are distributed among these distances:
16 4 0.03
17 6 0.05
19 27 0.22
20 48 0.40
21 29 0.24
22 6 0.05
ACGTcount: A:0.57, C:0.09, G:0.15, T:0.19
Consensus pattern (19 bp):
GAGGAATACAAAAAATTAT
Found at i:7708365 original size:20 final size:20
Alignment explanation
Indices: 7708342--7708439 Score: 85
Period size: 20 Copynumber: 4.8 Consensus size: 20
7708332 ATTACAAGGG
7708342 AATACCAAAAAATATGAGGA
1 AATACCAAAAAATATGAGGA
* *
7708362 AATACCAAAAAA-ACCCGAAGA
1 AATACCAAAAAATA--TGAGGA
* *
7708383 AATACCAAAAATTATGAGGG
1 AATACCAAAAAATATGAGGA
*
7708403 AATACTAAAAAATAT-ATGGA
1 AATACCAAAAAATATGA-GGA
*
7708423 AGTA-CAAAAAATTATGA
1 AATACCAAAAAA-TATGA
7708440 AAGGATGCCA
Statistics
Matches: 61, Mismatches: 11, Indels: 11
0.73 0.13 0.13
Matches are distributed among these distances:
19 8 0.13
20 36 0.59
21 16 0.26
22 1 0.02
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.17
Consensus pattern (20 bp):
AATACCAAAAAATATGAGGA
Found at i:7708525 original size:16 final size:16
Alignment explanation
Indices: 7708504--7708561 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 16
7708494 TCATCTTAGT
7708504 ATTTTTCATTTATTTA
1 ATTTTTCATTTATTTA
7708520 ATTTTTCCTATTT-TATTA
1 ATTTTT-C-ATTTAT-TTA
*
7708538 TTTTTTTCATTTATTTA
1 -ATTTTTCATTTATTTA
7708555 ATTTTTC
1 ATTTTTC
7708562 CTATTTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
16 12 0.34
17 9 0.26
18 9 0.26
19 5 0.14
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (16 bp):
ATTTTTCATTTATTTA
Found at i:7708571 original size:17 final size:18
Alignment explanation
Indices: 7708511--7708572 Score: 76
Period size: 17 Copynumber: 3.6 Consensus size: 18
7708501 AGTATTTTTC
7708511 ATTTATTTAATTTTTCCT
1 ATTTATTTAATTTTTCCT
* *
7708529 ATTT-TATTATTTTTTTC-
1 ATTTAT-TTAATTTTTCCT
7708546 ATTTATTTAATTTTTCCT
1 ATTTATTTAATTTTTCCT
7708564 ATTT-TTTAA
1 ATTTATTTAA
7708573 AATTATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
17 19 0.51
18 18 0.49
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTATTTAATTTTTCCT
Found at i:7708781 original size:20 final size:20
Alignment explanation
Indices: 7708756--7709156 Score: 131
Period size: 20 Copynumber: 20.0 Consensus size: 20
7708746 TATCAAGAAT
7708756 TATGAGGAAGTACCAAAAAA
1 TATGAGGAAGTACCAAAAAA
*
7708776 TATGA-GAAGGTA-TAAAAAA
1 TATGAGGAA-GTACCAAAAAA
*
7708795 TATGAGGAAATACCAAAAAA
1 TATGAGGAAGTACCAAAAAA
*
7708815 TCA-GAGGAA--A-TAAAAAA
1 T-ATGAGGAAGTACCAAAAAA
* ** *
7708832 TATGAGGAAATA-TTAAAAT
1 TATGAGGAAGTACCAAAAAA
* *
7708851 TATGAGAAAATACCAAAAAA
1 TATGAGGAAGTACCAAAAAA
* *
7708871 TCA-GAGGAAATATCAAAAAGA
1 T-ATGAGGAAGTACCAAAAA-A
*
7708892 CAATGA--AA-TACCAAAAAA
1 -TATGAGGAAGTACCAAAAAA
* * **
7708910 TATGAGGATGAATAAAAAAA
1 TATGAGGAAGTACCAAAAAA
* *
7708930 TTATGAGGAAATACCAAAAAC
1 -TATGAGGAAGTACCAAAAAA
*
7708951 TCTGAGGAAGTACCAAAAAAAA
1 TATGAGGAAGTACC--AAAAAA
* **
7708973 TTATGAGGGAAATA-C-AAAGT
1 -TATGA-GGAAGTACCAAAAAA
*
7708993 TATGAAGGAA-TACAAAAAAA
1 TATG-AGGAAGTACCAAAAAA
* * *
7709013 AATGAAG-AGTTACAAAAAAA
1 TATGAGGAAG-TACCAAAAAA
*
7709033 TATAAGAGAA-TACCAAAAAGA
1 TATGAG-GAAGTACCAAAAA-A
* *
7709054 GA-GAGAGAGAGAACTACCATAAAA
1 TATGAG-GA-AG---TACCAAAAAA
* *
7709078 TATGTGAAAGTACCCAAAAAA
1 TATGAGGAAGTA-CCAAAAAA
* * *
7709099 -ATGAGGATGT-TCTAAAAA
1 TATGAGGAAGTACCAAAAAA
* ** *
7709117 TATAAGGAAGTGTCAAAAAT
1 TATGAGGAAGTACCAAAAAA
7709137 TATGAGGGAA-TACCAAAAAA
1 TATGA-GGAAGTACCAAAAAA
7709157 ATATAATGAA
Statistics
Matches: 282, Mismatches: 61, Indels: 76
0.67 0.15 0.18
Matches are distributed among these distances:
16 1 0.00
17 17 0.06
18 11 0.04
19 60 0.21
20 126 0.45
21 33 0.12
22 8 0.03
23 7 0.02
24 9 0.03
25 10 0.04
ACGTcount: A:0.57, C:0.08, G:0.17, T:0.17
Consensus pattern (20 bp):
TATGAGGAAGTACCAAAAAA
Found at i:7708812 original size:19 final size:19
Alignment explanation
Indices: 7708756--7708969 Score: 143
Period size: 20 Copynumber: 11.0 Consensus size: 19
7708746 TATCAAGAAT
*
7708756 TATGAGGAAGTACCAAAAAA
1 TATGAGGAAATACC-AAAAA
* **
7708776 TATGA-GAAGGTATAAAAAA
1 TATGAGGAA-ATACCAAAAA
7708795 TATGAGGAAATACCAAAAA
1 TATGAGGAAATACCAAAAA
7708814 -ATCAGAGGAAATA--AAAAA
1 TAT--GAGGAAATACCAAAAA
** *
7708832 TATGAGGAAATATTAAAAT
1 TATGAGGAAATACCAAAAA
*
7708851 TATGAGAAAATACCAAAAA
1 TATGAGGAAATACCAAAAA
*
7708870 -ATCAGAGGAAATATCAAAAA
1 TAT--GAGGAAATACCAAAAA
* ** *
7708890 GACAATGAAATACCAAAAAA
1 TATGAGGAAATACC-AAAAA
*
7708910 TATGAGGATGAATA-AAAAAA
1 TATGAGGA--AATACCAAAAA
7708930 TTATGAGGAAATACCAAAAA
1 -TATGAGGAAATACCAAAAA
* *
7708950 CTCTGAGGAAGTACCAAAAA
1 -TATGAGGAAATACCAAAAA
7708970 AAATTATGAG
Statistics
Matches: 154, Mismatches: 25, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
17 9 0.06
18 9 0.06
19 53 0.34
20 70 0.45
21 9 0.06
22 4 0.03
ACGTcount: A:0.58, C:0.08, G:0.16, T:0.17
Consensus pattern (19 bp):
TATGAGGAAATACCAAAAA
Found at i:7708837 original size:37 final size:37
Alignment explanation
Indices: 7708756--7708843 Score: 117
Period size: 39 Copynumber: 2.3 Consensus size: 37
7708746 TATCAAGAAT
*
7708756 TATGAGGAAGTACCAAAAAATATGAGAAGGTATAAAAAA
1 TATGAGGAAATACCAAAAAATATGAGAA-G-ATAAAAAA
7708795 TATGAGGAAATACCAAAAAATCA-GAGGAA-ATAAAAAA
1 TATGAGGAAATACCAAAAAAT-ATGA-GAAGATAAAAAA
7708832 TATGAGGAAATA
1 TATGAGGAAATA
7708844 TTAAAATTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
37 20 0.43
39 22 0.48
40 4 0.09
ACGTcount: A:0.58, C:0.06, G:0.19, T:0.17
Consensus pattern (37 bp):
TATGAGGAAATACCAAAAAATATGAGAAGATAAAAAA
Found at i:7708855 original size:56 final size:56
Alignment explanation
Indices: 7708770--7708882 Score: 174
Period size: 56 Copynumber: 2.0 Consensus size: 56
7708760 AGGAAGTACC
* *
7708770 AAAAAATATGAGAAGGTATAAAAAATATGAGGAAATACCAAAAAATCAGAGGAAAT
1 AAAAAATATGAGAAGATATAAAAAATATGAGAAAATACCAAAAAATCAGAGGAAAT
* *
7708826 AAAAAATATGAGGAA-ATATTAAAATTATGAGAAAATACCAAAAAATCAGAGGAAAT
1 AAAAAATATGA-GAAGATATAAAAAATATGAGAAAATACCAAAAAATCAGAGGAAAT
7708882 A
1 A
7708883 TCAAAAAGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 49 0.94
57 3 0.06
ACGTcount: A:0.61, C:0.05, G:0.16, T:0.18
Consensus pattern (56 bp):
AAAAAATATGAGAAGATATAAAAAATATGAGAAAATACCAAAAAATCAGAGGAAAT
Found at i:7708880 original size:39 final size:38
Alignment explanation
Indices: 7708789--7708959 Score: 129
Period size: 39 Copynumber: 4.4 Consensus size: 38
7708779 GAGAAGGTAT
* *
7708789 AAAAAATATGAGGAAATACCAAAAAATCA-GAGGAAAT---
1 AAAAAATATGAGGAAATA--TAAAAATTATGA-GAAATACC
*
7708826 AAAAAATATGAGGAAATATTAAAATTATGAGAAAATACC
1 AAAAAATATGAGGAAATATAAAAATTATGAG-AAATACC
* **
7708865 AAAAAATCA-GAGGAAATATCAAAAA-GACAATGAAATACC
1 AAAAAAT-ATGAGGAAATAT-AAAAATTATGA-GAAATACC
*
7708904 AAAAAATATGAGGATGAATAAAAAAATTATGAGGAAATACC
1 AAAAAATATGAGGA--AATATAAAAATTATGA-GAAATACC
* *
7708945 AAAAACTCTGAGGAA
1 AAAAAATATGAGGAA
7708960 GTACCAAAAA
Statistics
Matches: 108, Mismatches: 14, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
35 7 0.06
36 6 0.06
37 18 0.17
38 1 0.01
39 39 0.36
40 11 0.10
41 26 0.24
ACGTcount: A:0.60, C:0.08, G:0.15, T:0.17
Consensus pattern (38 bp):
AAAAAATATGAGGAAATATAAAAATTATGAGAAATACC
Found at i:7709002 original size:43 final size:42
Alignment explanation
Indices: 7708896--7709015 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
7708886 AAAAGACAAT
* *
7708896 GAAATACCAAAAAATATGAGG-ATGA-ATAAAAAAATTATGAG
1 GAAATACCAAAAACTATGAGGAAT-ACAAAAAAAAATTATGAG
* *
7708937 GAAATACCAAAAACTCTGAGGAAGTACCAAAAAAAATTATGAGG
1 GAAATACCAAAAACTATGAGGAA-TACAAAAAAAAATTATGA-G
**
7708981 GAAATA-C-AAAGTTATGAAGGAATACAAAAAAAAAT
1 GAAATACCAAAAACTATG-AGGAATACAAAAAAAAAT
7709016 GAAGAGTTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
41 19 0.29
42 20 0.30
43 20 0.30
44 7 0.11
ACGTcount: A:0.57, C:0.08, G:0.17, T:0.17
Consensus pattern (42 bp):
GAAATACCAAAAACTATGAGGAATACAAAAAAAAATTATGAG
Found at i:7709006 original size:18 final size:19
Alignment explanation
Indices: 7708973--7709008 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7708963 CCAAAAAAAA
*
7708973 TTATGAGGGAAATACAAAG
1 TTATGAAGGAAATACAAAG
7708992 TTATGAAGG-AATACAAA
1 TTATGAAGGAAATACAAA
7709009 AAAAAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (19 bp):
TTATGAAGGAAATACAAAG
Found at i:7710675 original size:38 final size:38
Alignment explanation
Indices: 7710633--7710706 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 38
7710623 TGTAATAGAA
7710633 CAATTCAACACTAGAAGTCA-ACATGCTTAACATGTATT
1 CAATTCAACACTAGAAGT-AGACATGCTTAACATGTATT
* *
7710671 CAATTCAACACTAGCAGTAGATATGCTTAACATGTA
1 CAATTCAACACTAGAAGTAGACATGCTTAACATGTA
7710707 CTTAGTAGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.28
Consensus pattern (38 bp):
CAATTCAACACTAGAAGTAGACATGCTTAACATGTATT
Found at i:7712318 original size:15 final size:17
Alignment explanation
Indices: 7712298--7712356 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 17
7712288 TATAGTCTCT
7712298 TATAGTGTT-ACAA-TC
1 TATAGTGTTCACAATTC
*
7712313 TATAGTTTTCACAATTC
1 TATAGTGTTCACAATTC
* *
7712330 TATAGT-TTCA-AAGTA
1 TATAGTGTTCACAATTC
7712345 TATAGT-TTCACA
1 TATAGTGTTCACA
7712357 TATAAACAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
15 21 0.55
16 9 0.24
17 8 0.21
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (17 bp):
TATAGTGTTCACAATTC
Found at i:7712333 original size:17 final size:15
Alignment explanation
Indices: 7712298--7712337 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
7712288 TATAGTCTCT
*
7712298 TATAGTGTTACAATC
1 TATAGTTTTACAATC
7712313 TATAGTTTTCACAATTC
1 TATAGTTTT-ACAA-TC
7712330 TATAGTTT
1 TATAGTTT
7712338 CAAAGTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 4 0.18
17 10 0.45
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (15 bp):
TATAGTTTTACAATC
Found at i:7713799 original size:43 final size:43
Alignment explanation
Indices: 7713654--7713810 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
7713644 TGTGATTTCG
* ** *
7713654 TGTAAGACCACGTCTGGGAC-GTTGGCATCGAATTTTTTTTTACG
1 TGTAAGACCACGTCTGGGACAG-TGGCATC-AATATTTGATTACA
* * * * * * *
7713698 TGTAAGACCATGCCTGGGATATTGGCATC-GTATCTGATTTCA
1 TGTAAGACCACGTCTGGGACAGTGGCATCAATATTTGATTACA
* * *
7713740 TGCAATACC-CTGTCTGGGACAGTGGCATCAATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCAATATTTGATTACA
*
7713783 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACAGTGGCAT
7713811 TGTATATGTT
Statistics
Matches: 85, Mismatches: 24, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
42 28 0.33
43 32 0.38
44 25 0.29
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCAATATTTGATTACA
Found at i:7714987 original size:52 final size:52
Alignment explanation
Indices: 7714907--7715027 Score: 156
Period size: 52 Copynumber: 2.3 Consensus size: 52
7714897 TTAACAAAGT
*
7714907 CATGCATTATGTAACTCTCATGTAAGTT-AAGTTTGCATCA-TAAATTATGA
1 CATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTATGA
* * *
7714957 CATGCATTATGTAAAACTCCCATGTCAGTTAAAGTTTGCATCATTAAATTAAGT
1 CATGCATTATGT--AACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTATGA
* *
7715011 CATGTATTAAGTAACTC
1 CATGCATTATGTAACTC
7715028 AATTTGTTCA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
50 12 0.20
52 19 0.31
53 12 0.20
54 18 0.30
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTATGA
Found at i:7719274 original size:39 final size:39
Alignment explanation
Indices: 7719222--7719307 Score: 145
Period size: 39 Copynumber: 2.2 Consensus size: 39
7719212 TTTAGTTATT
* *
7719222 TTAGTTTGTGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
7719261 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
*
7719300 TTAATATG
1 TTAGTATG
7719308 TGTTCTGCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (39 bp):
TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
Found at i:7719444 original size:52 final size:51
Alignment explanation
Indices: 7719315--7719446 Score: 185
Period size: 50 Copynumber: 2.6 Consensus size: 51
7719305 ATGTGTTCTG
* * *
7719315 CATTTAATAAAGTCATGCATTATGTAACTCTCATGTAAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCAT
* * *
7719366 CA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTT-AAGTTTGCAT
*
7719417 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
7719447 ATTTGTTCAT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
50 32 0.46
51 14 0.20
52 24 0.34
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCAT
Found at i:7722820 original size:22 final size:23
Alignment explanation
Indices: 7722790--7722835 Score: 85
Period size: 22 Copynumber: 2.0 Consensus size: 23
7722780 TGGGGGTGTA
7722790 TGGTCGACTAGGGTGTTTTTTGG
1 TGGTCGACTAGGGTGTTTTTTGG
7722813 TGGT-GACTAGGGTGTTTTTTGG
1 TGGTCGACTAGGGTGTTTTTTGG
7722835 T
1 T
7722836 AAAGGTGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 19 0.83
23 4 0.17
ACGTcount: A:0.09, C:0.07, G:0.39, T:0.46
Consensus pattern (23 bp):
TGGTCGACTAGGGTGTTTTTTGG
Found at i:7724481 original size:16 final size:16
Alignment explanation
Indices: 7724431--7724483 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
7724421 GGAAATTGGG
7724431 AAAGAAAAAGGAAAAA
1 AAAGAAAAAGGAAAAA
* **
7724447 AAGGAAAAAGGGGAAA
1 AAAGAAAAAGGAAAAA
7724463 AAAG-AAAAGGAAAACA
1 AAAGAAAAAGGAAAA-A
7724479 AAAGA
1 AAAGA
7724484 CGACAATGAC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 8 0.28
16 21 0.72
ACGTcount: A:0.74, C:0.02, G:0.25, T:0.00
Consensus pattern (16 bp):
AAAGAAAAAGGAAAAA
Found at i:7726055 original size:27 final size:27
Alignment explanation
Indices: 7726017--7726073 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
7726007 ACTGTGATAT
7726017 TAAAGATCAAGATTTTACTAACCTTAG
1 TAAAGATCAAGATTTTACTAACCTTAG
* *
7726044 TAAAGATTAAGATTTTACTAACTTTAG
1 TAAAGATCAAGATTTTACTAACCTTAG
7726071 TAA
1 TAA
7726074 GCGTCAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (27 bp):
TAAAGATCAAGATTTTACTAACCTTAG
Found at i:7727715 original size:14 final size:14
Alignment explanation
Indices: 7727694--7727734 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7727684 CTTATCTAAT
7727694 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTGA
* **
7727708 TTTGCAAGTTGCAA
1 TGTGCAAGTTGTGA
7727722 TGTGCAAGTTGTG
1 TGTGCAAGTTGTG
7727735 CAAGTTGCAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.22, C:0.10, G:0.32, T:0.37
Consensus pattern (14 bp):
TGTGCAAGTTGTGA
Found at i:7732276 original size:14 final size:14
Alignment explanation
Indices: 7732255--7732298 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
7732245 CTTACCTAAT
**
7732255 TGTGCAAGTTGTGA
1 TGTGCAAGTTGCAA
*
7732269 TTTGCAAGTTGCAA
1 TGTGCAAGTTGCAA
7732283 TGTGCAAGTTGCAA
1 TGTGCAAGTTGCAA
7732297 TG
1 TG
7732299 AGGCCTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.25, C:0.11, G:0.30, T:0.34
Consensus pattern (14 bp):
TGTGCAAGTTGCAA
Found at i:7743522 original size:42 final size:42
Alignment explanation
Indices: 7743471--7743554 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
7743461 CAACAATTTA
*
7743471 AAAAGATTTATGTAATTTTTGTATTAATCATTAGCATTTTGT
1 AAAACATTTATGTAATTTTTGTATTAATCATTAGCATTTTGT
7743513 AAAACATTTATGTAATTTTTGTATTAATCATTAGCATTTTGT
1 AAAACATTTATGTAATTTTTGTATTAATCATTAGCATTTTGT
7743555 GTTTGTTTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (42 bp):
AAAACATTTATGTAATTTTTGTATTAATCATTAGCATTTTGT
Found at i:7743551 original size:21 final size:21
Alignment explanation
Indices: 7743485--7743552 Score: 70
Period size: 20 Copynumber: 3.2 Consensus size: 21
7743475 GATTTATGTA
7743485 ATTTTTGTATTAATCATTAGC
1 ATTTTTGTATTAATCATTAGC
* *
7743506 A-TTTTGTA--AAACATTTATGTA
1 ATTTTTGTATTAATCA-TTA-G-C
7743527 ATTTTTGTATTAATCATTAGC
1 ATTTTTGTATTAATCATTAGC
7743548 ATTTT
1 ATTTT
7743553 GTGTTTGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
18 4 0.11
19 3 0.08
20 8 0.22
21 7 0.19
22 8 0.22
23 3 0.08
24 4 0.11
ACGTcount: A:0.31, C:0.07, G:0.09, T:0.53
Consensus pattern (21 bp):
ATTTTTGTATTAATCATTAGC
Found at i:7744575 original size:52 final size:52
Alignment explanation
Indices: 7744513--7744616 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
7744503 AAGATTAATA
*
7744513 TGTCGATTATCAATTCCAATTGTGGAGATGTTTTGTCTTGGGTATCAGAGCG
1 TGTCGATTATCAATTCCAATTGTGGAGATGTTTTGTCTTAGGTATCAGAGCG
7744565 TGTCGATTATCAATTCCAATTGTGGAGATGTTTTGTCTTAGGTATCAGAGCG
1 TGTCGATTATCAATTCCAATTGTGGAGATGTTTTGTCTTAGGTATCAGAGCG
7744617 GATGACTCTC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.38
Consensus pattern (52 bp):
TGTCGATTATCAATTCCAATTGTGGAGATGTTTTGTCTTAGGTATCAGAGCG
Found at i:7745226 original size:10 final size:10
Alignment explanation
Indices: 7745211--7745241 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
7745201 AAATATCTAG
7745211 ATTTCTCTTC
1 ATTTCTCTTC
7745221 ATTTCTCTTC
1 ATTTCTCTTC
7745231 ATTTCTCTTC
1 ATTTCTCTTC
7745241 A
1 A
7745242 ATTCCAGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.13, C:0.29, G:0.00, T:0.58
Consensus pattern (10 bp):
ATTTCTCTTC
Found at i:7747483 original size:23 final size:23
Alignment explanation
Indices: 7747457--7747501 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7747447 TGGGTATGTG
*
7747457 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
7747480 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
7747502 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:7764563 original size:12 final size:11
Alignment explanation
Indices: 7764530--7764563 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
7764520 ATTTAATGGG
7764530 AAAAATAATTT
1 AAAAATAATTT
*
7764541 AAAATTAATTT
1 AAAAATAATTT
7764552 AATAAATAATTT
1 AA-AAATAATTT
7764564 TCATTTTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAAAATAATTT
Found at i:7768709 original size:31 final size:31
Alignment explanation
Indices: 7768671--7768734 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
7768661 TCCCGGTAGC
7768671 TTGATAAAGCTTATGCTAGCAATAATTTAAG
1 TTGATAAAGCTTATGCTAGCAATAATTTAAG
7768702 TTGATAAAGCTTATGCTAGCAATAATTTAAG
1 TTGATAAAGCTTATGCTAGCAATAATTTAAG
7768733 TT
1 TT
7768735 AAGGTTCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (31 bp):
TTGATAAAGCTTATGCTAGCAATAATTTAAG
Found at i:7784590 original size:26 final size:23
Alignment explanation
Indices: 7784561--7784621 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 23
7784551 AAAAACTTTT
7784561 TTTTATATTTTTTATTAATTTATATA
1 TTTTA-ATTTTTTA--AATTTATATA
*
7784587 TTTTAAATTTTTTAATTTTATATA
1 TTTT-AATTTTTTAAATTTATATA
7784611 TATTTAATTTT
1 T-TTTAATTTT
7784622 ATAATAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
24 16 0.50
25 3 0.09
26 12 0.38
27 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTTAATTTTTTAAATTTATATA
Found at i:7784606 original size:24 final size:24
Alignment explanation
Indices: 7784570--7784626 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
7784560 TTTTTATATT
7784570 TTTTATTAA-TTTATATAT-TTTAAA
1 TTTT-TTAATTTTATATATATTT-AA
7784594 TTTTTTAATTTTATATATATTTAA
1 TTTTTTAATTTTATATATATTTAA
*
7784618 TTTTATAAT
1 TTTTTTAAT
7784627 AATATAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 4 0.13
24 23 0.77
25 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTTTTAATTTTATATATATTTAA
Found at i:7784632 original size:24 final size:25
Alignment explanation
Indices: 7784561--7784632 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
7784551 AAAAACTTTT
* *
7784561 TTTTATATTTTTTATTAATTTATATA
1 TTTTA-ATTTTTTAATAATATATATA
**
7784587 TTTTAAATTTTTTAATTTTATATATA
1 TTTT-AATTTTTTAATAATATATATA
*
7784613 -TTTAATTTTATAATAATATA
1 TTTTAATTTTTTAATAATATA
7784633 AATAACCTCA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
24 14 0.37
25 3 0.08
26 20 0.53
27 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTAATTTTTTAATAATATATATA
Found at i:7784674 original size:27 final size:28
Alignment explanation
Indices: 7784615--7784674 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
7784605 TATATATATT
* *
7784615 TAATTTTATAATAATATAAATAACCTCA
1 TAATTTTATAATAATATAAAAAACATCA
7784643 T-ATTTTATAATAA-ATAAAAAACAT-A
1 TAATTTTATAATAATATAAAAAACATCA
7784668 TGAATTT
1 T-AATTT
7784675 ACTAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 9 0.32
27 16 0.57
28 1 0.04
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (28 bp):
TAATTTTATAATAATATAAAAAACATCA
Found at i:7784675 original size:26 final size:26
Alignment explanation
Indices: 7784619--7784685 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
7784609 TATATTTAAT
* * *
7784619 TTTATAATAATATAAATAACCTCATAT
1 TTTATAATAA-ATAAAAAACATCATAA
7784646 TTTATAATAAATAAAAAACAT-ATGAA
1 TTTATAATAAATAAAAAACATCAT-AA
*
7784672 TTTACTAAAAAATA
1 TTTA-TAATAAATA
7784686 CATCTTGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 14 0.41
27 18 0.53
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (26 bp):
TTTATAATAAATAAAAAACATCATAA
Found at i:7784832 original size:17 final size:17
Alignment explanation
Indices: 7784810--7784843 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7784800 TGCTTGTCAA
7784810 ATAACATGCTAAGAGGT
1 ATAACATGCTAAGAGGT
7784827 ATAACATGCTAAGAGGT
1 ATAACATGCTAAGAGGT
7784844 TGGCATGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
ATAACATGCTAAGAGGT
Found at i:7791262 original size:24 final size:24
Alignment explanation
Indices: 7791230--7791280 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
7791220 GTGAGTTTTA
7791230 AATTCTGACCTAAATTAATCTGCC
1 AATTCTGACCTAAATTAATCTGCC
7791254 AATTCTGACCTAAATTAATCTGCC
1 AATTCTGACCTAAATTAATCTGCC
7791278 AAT
1 AAT
7791281 GTTTTTCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (24 bp):
AATTCTGACCTAAATTAATCTGCC
Found at i:7792749 original size:12 final size:12
Alignment explanation
Indices: 7792732--7792759 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7792722 TTGGTTATTG
7792732 CTGTAGCAGCTT
1 CTGTAGCAGCTT
7792744 CTGTAGCAGCTT
1 CTGTAGCAGCTT
7792756 CTGT
1 CTGT
7792760 TTTTTGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.25, G:0.25, T:0.36
Consensus pattern (12 bp):
CTGTAGCAGCTT
Found at i:7794863 original size:16 final size:16
Alignment explanation
Indices: 7794842--7794883 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7794832 ATATTAAATT
*
7794842 ATATATTTTAATTATA
1 ATATATTTTAATAATA
7794858 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
7794873 AT-TATGTTTAA
1 ATATAT-TTTAA
7794884 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:7794868 original size:15 final size:15
Alignment explanation
Indices: 7794832--7794874 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
7794822 GAGTAAATTC
*
7794832 ATATTAAATTAT-AT
1 ATATTTAATTATAAT
7794846 AT-TTTAATTATAAT
1 ATATTTAATTATAAT
*
7794860 ATATTTAATAATAAT
1 ATATTTAATTATAAT
7794875 TATGTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.32
14 6 0.24
15 11 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATTTAATTATAAT
Found at i:7795011 original size:18 final size:17
Alignment explanation
Indices: 7794983--7795017 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7794973 ATTATTAAGA
*
7794983 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7795000 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7795018 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7795015 original size:154 final size:156
Alignment explanation
Indices: 7794833--7795130 Score: 546
Period size: 154 Copynumber: 1.9 Consensus size: 156
7794823 AGTAAATTCA
*
7794833 TATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
7794898 TTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
66 TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
7794961 AAATTTATGCTAATTATTAAGAATTT
131 AAATTTATGCTAATTATTAAGAATTT
7794987 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
1 TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
*
7795052 TTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAATCATTTACCAAAA
66 TTTATTATTGATAAT-ATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAA
*
7795117 CAAATTTCTGCTAA
130 CAAATTTATGCTAA
7795131 GGGTATTCTA
Statistics
Matches: 138, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
154 76 0.55
155 2 0.01
157 60 0.43
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (156 bp):
TATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAATATGATTAAATTA
TTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAACAATAATAATTTACCAAAAC
AAATTTATGCTAATTATTAAGAATTT
Found at i:7795271 original size:16 final size:16
Alignment explanation
Indices: 7795250--7795288 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7795240 TTGATTTGCT
*
7795250 ATTACACAGCTTTTCC
1 ATTACACAGCTATTCC
**
7795266 ATTACACCTCTATTCC
1 ATTACACAGCTATTCC
7795282 ATTACAC
1 ATTACAC
7795289 CTCTAATCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.33, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACAGCTATTCC
Found at i:7795289 original size:16 final size:16
Alignment explanation
Indices: 7795263--7795319 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
7795253 ACACAGCTTT
* *
7795263 TCCATTACACCTCTAT
1 TCCAATACACCTCTAA
*
7795279 TCCATTACACCTCTAA
1 TCCAATACACCTCTAA
7795295 TCCAATACACCTCTAA
1 TCCAATACACCTCTAA
7795311 TCCAATACA
1 TCCAATACA
7795320 GCGAACCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.33, C:0.37, G:0.00, T:0.30
Consensus pattern (16 bp):
TCCAATACACCTCTAA
Found at i:7809411 original size:30 final size:30
Alignment explanation
Indices: 7809377--7809436 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
7809367 TCCCGAGCCC
7809377 AGGGGCAAAAGTGTAAATATGCAAAAGTTT
1 AGGGGCAAAAGTGTAAATATGCAAAAGTTT
* * * *
7809407 AGGGGCAAAATTGTAATTTTGCCAAAGTTT
1 AGGGGCAAAAGTGTAAATATGCAAAAGTTT
7809437 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
AGGGGCAAAAGTGTAAATATGCAAAAGTTT
Found at i:7812493 original size:35 final size:35
Alignment explanation
Indices: 7812447--7812518 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
7812437 TTCACAAGGT
*
7812447 TTCAAACATCTCATAAAGTATAATT-TATATGCCTG
1 TTCAAACATCTCATAAAATATAATTAT-TATGCCTG
*
7812482 TTCAAATATCTCATAAAATATAATTATTATGCCTG
1 TTCAAACATCTCATAAAATATAATTATTATGCCTG
7812517 TT
1 TT
7812519 TTTTTTTCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 33 0.97
36 1 0.03
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (35 bp):
TTCAAACATCTCATAAAATATAATTATTATGCCTG
Found at i:7812628 original size:78 final size:78
Alignment explanation
Indices: 7812540--7812702 Score: 301
Period size: 78 Copynumber: 2.1 Consensus size: 78
7812530 ATGAAAATAG
*
7812540 GCTCATTAAGCTTCAATTTCATAACTTGGTCTTCATTTAATTCCATTTATACTATTTTTAGTGAT
1 GCTCATTAAGCTTCAATTTCATAACTTGGTCATCATTTAATTCCATTTATACTATTTTTAGTGAT
7812605 TTTTCAAATTCAT
66 TTTTCAAATTCAT
*
7812618 GCTCATTAAGCTTCAATTTCATAACTTGGTCATCATTTAATTCCGTTTATACTATTTTTAGTGAT
1 GCTCATTAAGCTTCAATTTCATAACTTGGTCATCATTTAATTCCATTTATACTATTTTTAGTGAT
7812683 TTTTCAAATTCAT
66 TTTTCAAATTCAT
7812696 G-TCATTA
1 GCTCATTA
7812703 CTGCAGCAAT
Statistics
Matches: 83, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
77 6 0.07
78 77 0.93
ACGTcount: A:0.27, C:0.17, G:0.09, T:0.48
Consensus pattern (78 bp):
GCTCATTAAGCTTCAATTTCATAACTTGGTCATCATTTAATTCCATTTATACTATTTTTAGTGAT
TTTTCAAATTCAT
Found at i:7813910 original size:30 final size:30
Alignment explanation
Indices: 7813876--7813935 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
7813866 ATTTAATATG
7813876 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
7813906 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
7813936 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:7821412 original size:30 final size:30
Alignment explanation
Indices: 7821378--7821437 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
7821368 ATTTAATATG
7821378 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
7821408 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
7821438 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:7825633 original size:20 final size:20
Alignment explanation
Indices: 7825592--7825636 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7825582 AGCACATGTA
* *
7825592 TTCATAAAATTTCAGAATTT
1 TTCATAAAATTTCACAACTT
7825612 TTCATCAAAATTT-ACAACTT
1 TTCAT-AAAATTTCACAACTT
7825632 TTCAT
1 TTCAT
7825637 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.38, C:0.16, G:0.02, T:0.44
Consensus pattern (20 bp):
TTCATAAAATTTCACAACTT
Found at i:7830235 original size:31 final size:31
Alignment explanation
Indices: 7830199--7830272 Score: 139
Period size: 31 Copynumber: 2.4 Consensus size: 31
7830189 GTGGCGTAGG
*
7830199 ACACGCCCGTGTGGGTAGGCGGTGTGGTCAC
1 ACACGCCCGTGTGGGCAGGCGGTGTGGTCAC
7830230 ACACGCCCGTGTGGGCAGGCGGTGTGGTCAC
1 ACACGCCCGTGTGGGCAGGCGGTGTGGTCAC
7830261 ACACGCCCGTGT
1 ACACGCCCGTGT
7830273 CCCTAACCCA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.14, C:0.30, G:0.39, T:0.18
Consensus pattern (31 bp):
ACACGCCCGTGTGGGCAGGCGGTGTGGTCAC
Found at i:7831354 original size:20 final size:20
Alignment explanation
Indices: 7831326--7831369 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
7831316 TACCAACTTG
*
7831326 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
7831346 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
7831366 CAAC
1 CAAC
7831370 TTAAACATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:7837634 original size:37 final size:37
Alignment explanation
Indices: 7837584--7837662 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
7837574 TTATTACGAA
* *
7837584 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
7837621 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
7837658 GTCTT
1 GTCTT
7837663 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:7837859 original size:47 final size:47
Alignment explanation
Indices: 7837781--7838019 Score: 372
Period size: 47 Copynumber: 5.1 Consensus size: 47
7837771 CCCTTCGGGA
* * * * *
7837781 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
***
7837828 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7837875 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7837922 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
7837969 CTTATCACATATATACACTTTGACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
7838016 CTTA
1 CTTA
7838020 CTATCATTTC
Statistics
Matches: 177, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 2 0.01
47 175 0.99
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:7839973 original size:40 final size:39
Alignment explanation
Indices: 7839889--7840073 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
7839879 TTGAATAATG
* * * *
7839889 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
7839929 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
7839969 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
7840008 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
7840049 -CCGGGCTATGTCTCGAAGGCATTTG
1 TCCGGGCTAAGTC-CGAAGGCATTTG
7840074 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 36 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:7840025 original size:79 final size:82
Alignment explanation
Indices: 7839884--7840073 Score: 221
Period size: 79 Copynumber: 2.4 Consensus size: 82
7839874 GTTATTTGAA
* *
7839884 TAATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
*
7839948 GCATTTGTGCGAGATAC
66 GCAATTGTGCGAGATAC
* * * **
7839965 TAAT-TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAA
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAA
*
7840026 GGCAATTGTGCGAGTTAC
65 GGCAATTGTGCGAGATAC
* * *
7840044 T-ATAACCGGGCTATGTCTCGAAGGCATTTG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTG
7840074 AACGAGTAGC
Statistics
Matches: 94, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.60
80 31 0.33
81 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (82 bp):
TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
GCAATTGTGCGAGATAC
Found at i:7840095 original size:79 final size:79
Alignment explanation
Indices: 7839942--7840106 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
7839932 GGACTAAGAT
* * **
7839942 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
7840007 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
7840021 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCTCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
7840084 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
7840100 CCGAAGG
1 CCGAAGG
7840107 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Done.