Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 221 of 313
Found at i:68050494 original size:39 final size:40
Alignment explanation
Indices: 68050399--68050621 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
68050389 TTGAATGATG
*
68050399 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
68050437 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
68050478 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
68050517 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
68050556 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
68050595 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
68050622 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:68050585 original size:79 final size:81
Alignment explanation
Indices: 68050399--68050621 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
68050389 TTGAATGATG
* * *
68050399 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
68050461 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
68050478 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
68050539 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
68050556 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
68050620 TG
66 TG
68050622 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:68050643 original size:79 final size:79
Alignment explanation
Indices: 68050399--68050654 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
68050389 TTGAATGATG
* * * *
68050399 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
68050460 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
68050478 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
68050542 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
68050556 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
68050619 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
68050636 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68050655 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:68055850 original size:12 final size:12
Alignment explanation
Indices: 68055817--68055856 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
68055807 CAAGCGAGTT
*
68055817 ACACGGCCTAGC
1 ACACGGCCTGGC
*
68055829 ATACGGCCTGGC
1 ACACGGCCTGGC
*
68055841 ACACGGCCTGAC
1 ACACGGCCTGGC
68055853 ACAC
1 ACAC
68055857 TGGCGTGTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (12 bp):
ACACGGCCTGGC
Found at i:68055925 original size:54 final size:54
Alignment explanation
Indices: 68055834--68055939 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 54
68055824 CTAGCATACG
* * *
68055834 GCCTGGCACACGGCCTGACACACTGGCGTGTGTGGCAACTAAGAGAGTTACATA
1 GCCTAGCACACGGCCTGACACACAGGCGTGTGGGGCAACTAAGAGAGTTACATA
* * * *
68055888 GCCTAGCACACGGCTTGGCACACAGGCGTGTGGGGCAACTCAGTGAGTTACA
1 GCCTAGCACACGGCCTGACACACAGGCGTGTGGGGCAACTAAGAGAGTTACA
68055940 CGAGTGACGA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.25, C:0.26, G:0.31, T:0.18
Consensus pattern (54 bp):
GCCTAGCACACGGCCTGACACACAGGCGTGTGGGGCAACTAAGAGAGTTACATA
Found at i:68064433 original size:19 final size:18
Alignment explanation
Indices: 68064402--68064437 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
68064392 TAACTACAAA
68064402 AAAAAATATCAAAAATTC
1 AAAAAATATCAAAAATTC
*
68064420 AAAAAATTTGCAAAAATT
1 AAAAAATAT-CAAAAATT
68064438 TTGAAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.08, G:0.03, T:0.25
Consensus pattern (18 bp):
AAAAAATATCAAAAATTC
Found at i:68070035 original size:18 final size:18
Alignment explanation
Indices: 68069999--68070036 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
68069989 CATTTCAACG
**
68069999 TTGTATGATGACAGTATT
1 TTGTATGATGACAAAATT
68070017 TTGTATGATGACAAAATT
1 TTGTATGATGACAAAATT
68070035 TT
1 TT
68070037 ATCGAAGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (18 bp):
TTGTATGATGACAAAATT
Found at i:68081203 original size:39 final size:39
Alignment explanation
Indices: 68081160--68081378 Score: 325
Period size: 39 Copynumber: 5.6 Consensus size: 39
68081150 CATATTCACT
* * *
68081160 TTTAAGCGTATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
68081199 TTTAAGCATATATCACAATACTCATATAATCACATAAC-
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
68081237 TTTCAAAG-ATATATCACAATACTCATTTAATCACATAGCA
1 TTT--AAGCATATATCACAATACTCATATAATCACATAACA
*
68081277 TTTAAGCATATATCATAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
68081316 TTCAAGCATATATCATAATACTTATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
68081355 TTTAAGCATATATCACAATACTCA
1 TTTAAGCATATATCACAATACTCA
68081379 AAAATATGTT
Statistics
Matches: 163, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
38 6 0.04
39 151 0.93
40 6 0.04
ACGTcount: A:0.44, C:0.20, G:0.04, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:68084508 original size:21 final size:19
Alignment explanation
Indices: 68084484--68084539 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
68084474 CTCTCTCAAC
*
68084484 AAAAAATTTCAAAATAATTTT
1 AAAAAATTTCAAAAT-A-TTA
*
68084505 AAAAAATTTTAAAATATTA
1 AAAAAATTTCAAAATATTA
68084524 ATAAAAATTTCAAAAT
1 A-AAAAATTTCAAAAT
68084540 TTATATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.10
20 14 0.45
21 14 0.45
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAAATTTCAAAATATTA
Found at i:68084512 original size:10 final size:10
Alignment explanation
Indices: 68084484--68084518 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
68084474 CTCTCTCAAC
*
68084484 AAAAAATTTC
1 AAAAAATTTT
68084494 AAAATAATTTT
1 AAAA-AATTTT
68084505 AAAAAATTTT
1 AAAAAATTTT
68084515 AAAA
1 AAAA
68084519 TATTAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:68089961 original size:23 final size:23
Alignment explanation
Indices: 68089934--68089979 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
68089924 CTTTCTTATT
* *
68089934 ATAGTAATTTTCGGGGTATTACA
1 ATAGTAATTTTCGAGATATTACA
68089957 ATAGTAATTTTCGAGATATTACA
1 ATAGTAATTTTCGAGATATTACA
68089980 GCTAGACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (23 bp):
ATAGTAATTTTCGAGATATTACA
Found at i:68092324 original size:196 final size:196
Alignment explanation
Indices: 68091990--68092385 Score: 639
Period size: 196 Copynumber: 2.0 Consensus size: 196
68091980 ATGTTTAATA
* ** *
68091990 TGTCAAAGCAGAAACTTACTATTTCTTCCTTCGCAATATGCCAATACTTTTGTTAAAACAAAGTG
1 TGTCAAAGCAGAAACTCACTATTTCTTCCACCGCAATATGCCAATACTTTTGCTAAAACAAAGTG
* * *
68092055 GAGTAGCTGTCCACTCTAAAAGCCTTTAAAGGTGCTATATTCTTTACTGCCGTTGTGATTTCTTC
66 GAGTAGCTGCCCACACCAAAAGCCTTTAAAGGTGCTATATTCTTTACTGCCGTTGTGATTTCTTC
68092120 AATTCGAAATTCCTCTATTAACGCCCTGTTCATATTTTCGTTAATACAATTGGTAATCCCTGATA
131 AATTCGAAATTCCTCTATTAACGCCCTGTTCATATTTTCGTTAATACAATTGGTAATCCCTGATA
68092185 G
196 G
* *
68092186 TGTCAAAGCAGAAACTCGCTATTTCTTCCACCGCAATATGCCAATATTTTTGCTAAAACAAAGTG
1 TGTCAAAGCAGAAACTCACTATTTCTTCCACCGCAATATGCCAATACTTTTGCTAAAACAAAGTG
* * * *
68092251 GGGTAGTTGCCCACACCAGAAGCCTTTAAAGGTGCTATATTCTTTACTGCCTTTGTGATTTCTTC
66 GAGTAGCTGCCCACACCAAAAGCCTTTAAAGGTGCTATATTCTTTACTGCCGTTGTGATTTCTTC
* * * *
68092316 AATTCGAAATTCTTCTGTTAACGCCCTGTTCATATTTTTGTTAATACAATTGGTAATCCTTGATA
131 AATTCGAAATTCCTCTATTAACGCCCTGTTCATATTTTCGTTAATACAATTGGTAATCCCTGATA
68092381 G
196 G
68092382 TGTC
1 TGTC
68092386 CTCTCATCAT
Statistics
Matches: 183, Mismatches: 17, Indels: 0
0.92 0.09 0.00
Matches are distributed among these distances:
196 183 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (196 bp):
TGTCAAAGCAGAAACTCACTATTTCTTCCACCGCAATATGCCAATACTTTTGCTAAAACAAAGTG
GAGTAGCTGCCCACACCAAAAGCCTTTAAAGGTGCTATATTCTTTACTGCCGTTGTGATTTCTTC
AATTCGAAATTCCTCTATTAACGCCCTGTTCATATTTTCGTTAATACAATTGGTAATCCCTGATA
G
Found at i:68095476 original size:17 final size:18
Alignment explanation
Indices: 68095429--68095477 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
68095419 GGAATAAATA
* *
68095429 TTTCAATGACATAATAAT
1 TTTCAATAACATATTAAT
*
68095447 TTT-AATAATATATTAAT
1 TTTCAATAACATATTAAT
68095464 TTTCAAT-ACATATT
1 TTTCAATAACATATT
68095478 TTAGTCATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 20 0.77
18 6 0.23
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.47
Consensus pattern (18 bp):
TTTCAATAACATATTAAT
Found at i:68097491 original size:28 final size:28
Alignment explanation
Indices: 68097447--68097514 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
68097437 CCTATGCAGT
* *
68097447 AACAGT-ACAGTGTGGGCCTTAGCCCAA
1 AACAGTAACAGTGCGGGCCCTAGCCCAA
*
68097474 AACAGTAACAGTGCGGGCCCTAGCCCAG
1 AACAGTAACAGTGCGGGCCCTAGCCCAA
*
68097502 TACAGTAATCAGT
1 AACAGTAA-CAGT
68097515 ACAGTGCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 6 0.17
28 25 0.71
29 4 0.11
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.18
Consensus pattern (28 bp):
AACAGTAACAGTGCGGGCCCTAGCCCAA
Found at i:68097895 original size:27 final size:26
Alignment explanation
Indices: 68097865--68098088 Score: 198
Period size: 27 Copynumber: 8.3 Consensus size: 26
68097855 TATAATAGTT
*
68097865 ATTTTACCCTATGGGGGTATTTCAATC
1 ATTTTACCCT-TGGGGGTATTTCGATC
68097892 ATTTTACCCTTCGGGGGTATTTCGATC
1 ATTTTACCCTT-GGGGGTATTTCGATC
68097919 ATTTTACCCTTCGGGGGTATTTCGATC
1 ATTTTACCCTT-GGGGGTATTTCGATC
** *
68097946 ATTTTACCCTTCATGGGTATTTCGGTC
1 ATTTTACCCTT-GGGGGTATTTCGATC
* * * *
68097973 ATTTTACCCTTTAGGGGCATTTTGGTC
1 ATTTTACCC-TTGGGGGTATTTCGATC
** * * *
68098000 ATTTTACCCTTCAAGGGTATTTTGGTT
1 ATTTTACCCTT-GGGGGTATTTCGATC
* *
68098027 ATTTTACCTTTTGAGGGTATTTCGATC
1 ATTTTACC-CTTGGGGGTATTTCGATC
* * * *
68098054 ATTTTACCATTCGAGGGTATTTTGGTC
1 ATTTTACCCTT-GGGGGTATTTCGATC
68098081 A-TTTACCC
1 ATTTTACCC
68098089 ACGAATCGCA
Statistics
Matches: 173, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
26 11 0.06
27 158 0.91
28 4 0.02
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (26 bp):
ATTTTACCCTTGGGGGTATTTCGATC
Found at i:68097923 original size:54 final size:54
Alignment explanation
Indices: 68097865--68098088 Score: 279
Period size: 54 Copynumber: 4.2 Consensus size: 54
68097855 TATAATAGTT
* * ** *
68097865 ATTTTACCCTATGGGGGTATTTCAATCATTTTACCCTTCGGGGGTATTTCGATC
1 ATTTTACCCTTTGGGGGTATTTCGATCATTTTACCCTTCAAGGGTATTTCGGTC
* *
68097919 ATTTTACCCTTCGGGGGTATTTCGATCATTTTACCCTTCATGGGTATTTCGGTC
1 ATTTTACCCTTTGGGGGTATTTCGATCATTTTACCCTTCAAGGGTATTTCGGTC
* * * * * *
68097973 ATTTTACCCTTTAGGGGCATTTTGGTCATTTTACCCTTCAAGGGTATTTTGGTT
1 ATTTTACCCTTTGGGGGTATTTCGATCATTTTACCCTTCAAGGGTATTTCGGTC
* * * * *
68098027 ATTTTACCTTTTGAGGGTATTTCGATCATTTTACCATTCGAGGGTATTTTGGTC
1 ATTTTACCCTTTGGGGGTATTTCGATCATTTTACCCTTCAAGGGTATTTCGGTC
68098081 A-TTTACCC
1 ATTTTACCC
68098089 ACGAATCGCA
Statistics
Matches: 146, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
53 6 0.04
54 140 0.96
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (54 bp):
ATTTTACCCTTTGGGGGTATTTCGATCATTTTACCCTTCAAGGGTATTTCGGTC
Found at i:68097975 original size:81 final size:81
Alignment explanation
Indices: 68097879--68098088 Score: 253
Period size: 81 Copynumber: 2.6 Consensus size: 81
68097869 TACCCTATGG
* * * **
68097879 GGGTATTTCAATCATTTTACCCTTCGGGGGTATTTCGATCATTTTACCCTTCGGGGGTATTTCGA
1 GGGTATTTCGATCATTTTACCCTTCGGGGGTATTTTGGTCATTTTACCCTTCAAGGGTATTTCGA
68097944 TCATTTTACC-CTTCA
66 TCATTTTACCTCTTCA
* ** * *
68097959 TGGGTATTTCGGTCATTTTACCCTTTAGGGGCATTTTGGTCATTTTACCCTTCAAGGGTATTTTG
1 -GGGTATTTCGATCATTTTACCCTTCGGGGGTATTTTGGTCATTTTACCCTTCAAGGGTATTTCG
* * * *
68098024 GTTATTTTACCTTTTGA
65 ATCATTTTACCTCTTCA
* *
68098041 GGGTATTTCGATCATTTTACCATTCGAGGGTATTTTGGTCA-TTTACCC
1 GGGTATTTCGATCATTTTACCCTTCGGGGGTATTTTGGTCATTTTACCC
68098089 ACGAATCGCA
Statistics
Matches: 108, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
80 7 0.06
81 98 0.91
82 3 0.03
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (81 bp):
GGGTATTTCGATCATTTTACCCTTCGGGGGTATTTTGGTCATTTTACCCTTCAAGGGTATTTCGA
TCATTTTACCTCTTCA
Found at i:68102648 original size:25 final size:25
Alignment explanation
Indices: 68102618--68102678 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
68102608 TTTTGTCAAA
68102618 AATTTAATTAATAT-AAAATATTA-AT
1 AATTTAATTAAT-TGAAAA-ATTAGAT
*
68102643 AATTTAATAAATTGAAAAATTAGAT
1 AATTTAATTAATTGAAAAATTAGAT
*
68102668 AATTAAATTAA
1 AATTTAATTAA
68102679 AATTTAGGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.39
Consensus pattern (25 bp):
AATTTAATTAATTGAAAAATTAGAT
Found at i:68103254 original size:16 final size:15
Alignment explanation
Indices: 68103228--68103274 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
68103218 TAAATAAAGC
*
68103228 TAATAATAATTAATA
1 TAATTATAATTAATA
*
68103243 TATATTATAATTGATA
1 TA-ATTATAATTAATA
68103259 TAATTATATATTAATA
1 TAATTATA-ATTAATA
68103275 ATTATCATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (15 bp):
TAATTATAATTAATA
Found at i:68110287 original size:18 final size:19
Alignment explanation
Indices: 68110261--68110297 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
68110251 AATTCTAGAA
68110261 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
68110279 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
68110298 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:68114446 original size:13 final size:13
Alignment explanation
Indices: 68114428--68114461 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
68114418 TATGGCAATT
68114428 GTGTTTATTTAGA
1 GTGTTTATTTAGA
68114441 GTGTTTATTTAGA
1 GTGTTTATTTAGA
*
68114454 ATGTTTAT
1 GTGTTTAT
68114462 ATATGAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.56
Consensus pattern (13 bp):
GTGTTTATTTAGA
Found at i:68116964 original size:76 final size:76
Alignment explanation
Indices: 68116833--68117029 Score: 227
Period size: 76 Copynumber: 2.6 Consensus size: 76
68116823 AAATGAGTGA
* ** * *
68116833 TTGATATCGTTGGTTTATCCGACTATTAATGGGCGCAAATCTTTGTTCGTATATCCAACTAGTAT
1 TTGATATCATTGGTTTATCCGACTAGCAATGGGCGCAAATCATTGTTCGTATATCCAACTAGTAC
*
68116898 TGGGCACACAT
66 TAGGCACACAT
* * * *
68116909 TTGATATCATCT-GTTTATCCGACTAGCATTGCGCGCAAATCATTG-TCGGTTTATCCCACTAGT
1 TTGATATCAT-TGGTTTATCCGACTAGCAATGGGCGCAAATCATTGTTC-GTATATCCAACTAGT
*
68116972 GCTAGGCACACAT
64 ACTAGGCACACAT
* ** *
68116985 TTGATATCATTGGTTTATTCGACTAGCGCTGGGCGCAAAACATTG
1 TTGATATCATTGGTTTATCCGACTAGCAATGGGCGCAAATCATTG
68117030 CTATGATTTA
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
75 3 0.03
76 98 0.96
77 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (76 bp):
TTGATATCATTGGTTTATCCGACTAGCAATGGGCGCAAATCATTGTTCGTATATCCAACTAGTAC
TAGGCACACAT
Found at i:68120767 original size:40 final size:40
Alignment explanation
Indices: 68120723--68120835 Score: 108
Period size: 36 Copynumber: 2.9 Consensus size: 40
68120713 AGCACGGTGA
*
68120723 TAGGCACACATTTGATATCGTCAGTTTATCCAACTAGCGT
1 TAGGCACACATTTGATATCGTCAGTTTATCCAACTAGCGC
* * * *
68120763 TAGGCGCA-A-CTCAT-T-GTCAGTTTATCCAACTAGTGC
1 TAGGCACACATTTGATATCGTCAGTTTATCCAACTAGCGC
* * * * *
68120799 TAAGCACACATTTGATACCTTCAATTTATCCGACTAG
1 TAGGCACACATTTGATATCGTCAGTTTATCCAACTAG
68120836 TGCTGGGTGC
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
36 25 0.45
37 2 0.04
38 6 0.11
39 1 0.02
40 22 0.39
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (40 bp):
TAGGCACACATTTGATATCGTCAGTTTATCCAACTAGCGC
Found at i:68120838 original size:40 final size:40
Alignment explanation
Indices: 68120783--68120911 Score: 115
Period size: 40 Copynumber: 3.3 Consensus size: 40
68120773 TCATTGTCAG
* *
68120783 TTTATCCAACTAGTGCTAAGCACACATTTGATACCTTCAA
1 TTTATCCGACTAGTGCTAAGCACACATTTGATACCTTCGA
** ** * * *
68120823 TTTATCCGACTAGTGCTGGGTGCA-A-CTCAT---TGTCGG
1 TTTATCCGACTAGTGCTAAGCACACATTTGATACCT-TCGA
**
68120859 TTTATCTTACTAGTGCTAAGCACACATTTGATACCTTCGA
1 TTTATCCGACTAGTGCTAAGCACACATTTGATACCTTCGA
68120899 TTTATCCGACTAG
1 TTTATCCGACTAG
68120912 AGTTGGGCGC
Statistics
Matches: 63, Mismatches: 20, Indels: 12
0.66 0.21 0.13
Matches are distributed among these distances:
35 1 0.02
36 20 0.32
37 1 0.02
38 6 0.10
39 1 0.02
40 33 0.52
41 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (40 bp):
TTTATCCGACTAGTGCTAAGCACACATTTGATACCTTCGA
Found at i:68120852 original size:76 final size:76
Alignment explanation
Indices: 68120726--68120911 Score: 264
Period size: 76 Copynumber: 2.4 Consensus size: 76
68120716 ACGGTGATAG
* * * * *
68120726 GCACACATTTGATATCGTCAGTTTATCCAACTAGCGTTAGGCGCAACTCATTGTCAGTTTATCCA
1 GCACACATTTGATACCTTCAATTTATCCGACTAGCGCTAGGCGCAACTCATTGTCAGTTTATCCA
68120791 ACTAGTGCTAA
66 ACTAGTGCTAA
* * * * **
68120802 GCACACATTTGATACCTTCAATTTATCCGACTAGTGCTGGGTGCAACTCATTGTCGGTTTATCTT
1 GCACACATTTGATACCTTCAATTTATCCGACTAGCGCTAGGCGCAACTCATTGTCAGTTTATCCA
68120867 ACTAGTGCTAA
66 ACTAGTGCTAA
*
68120878 GCACACATTTGATACCTTCGATTTATCCGACTAG
1 GCACACATTTGATACCTTCAATTTATCCGACTAG
68120912 AGTTGGGCGC
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
76 98 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (76 bp):
GCACACATTTGATACCTTCAATTTATCCGACTAGCGCTAGGCGCAACTCATTGTCAGTTTATCCA
ACTAGTGCTAA
Found at i:68123596 original size:14 final size:14
Alignment explanation
Indices: 68123577--68123608 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
68123567 ACAATTTTGA
*
68123577 TTCTCAATTTCTTG
1 TTCTCAATTGCTTG
68123591 TTCTCAATTGCTTG
1 TTCTCAATTGCTTG
68123605 TTCT
1 TTCT
68123609 TAATGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.12, C:0.22, G:0.09, T:0.56
Consensus pattern (14 bp):
TTCTCAATTGCTTG
Found at i:68123661 original size:28 final size:28
Alignment explanation
Indices: 68123605--68123662 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
68123595 CAATTGCTTG
* **
68123605 TTCTTAATGTTTTATTCTTAATTGTCAA
1 TTCTTAATGTTTTATTCTAAATTCCCAA
* *
68123633 TTCTTGATTTTTTATTCTAAATTCCCAA
1 TTCTTAATGTTTTATTCTAAATTCCCAA
68123661 TT
1 TT
68123663 TTTTTTAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.05, T:0.57
Consensus pattern (28 bp):
TTCTTAATGTTTTATTCTAAATTCCCAA
Found at i:68123857 original size:50 final size:52
Alignment explanation
Indices: 68123776--68123873 Score: 155
Period size: 50 Copynumber: 1.9 Consensus size: 52
68123766 TGACAAATGG
** *
68123776 TAAGAAAATATTATTAAATTATTTAGTTTTAATTAGTTAATTATTATGATGT
1 TAAGAAAATATTATTAAATTATTTAAATTTAAATAGTTAATTATTATGATGT
68123828 TAAGAAAAT-TTATTAAA-TATTTAAATTTAAATAGTTAATTATTATG
1 TAAGAAAATATTATTAAATTATTTAAATTTAAATAGTTAATTATTATG
68123874 CGGTTTAGAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 26 0.60
51 8 0.19
52 9 0.21
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (52 bp):
TAAGAAAATATTATTAAATTATTTAAATTTAAATAGTTAATTATTATGATGT
Found at i:68131262 original size:49 final size:49
Alignment explanation
Indices: 68131103--68131243 Score: 201
Period size: 49 Copynumber: 2.9 Consensus size: 49
68131093 CGAACAACTT
* * * *
68131103 GGGATGACAGAATAATCAAATACTAAAAGCCATCATTCTTGGGCAACCC
1 GGGATGGCAGAATAAACAAATACTAAAAGTCATCATTGTTGGGCAACCC
* * *
68131152 GGGATGGTAGAATAAACAAATACTAAAAATCATCATTGTCGGGCAACCC
1 GGGATGGCAGAATAAACAAATACTAAAAGTCATCATTGTTGGGCAACCC
* *
68131201 GAGATGGCAGAATAAACAAATACTAAAAGTCATCGTTGTTGGG
1 GGGATGGCAGAATAAACAAATACTAAAAGTCATCATTGTTGGG
68131244 TAAATTGGGA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 80 1.00
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (49 bp):
GGGATGGCAGAATAAACAAATACTAAAAGTCATCATTGTTGGGCAACCC
Found at i:68136854 original size:18 final size:18
Alignment explanation
Indices: 68136831--68136867 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
68136821 TTTATATAAC
*
68136831 AATCCCAGAAGGATTTAG
1 AATCCCAGAAGGATATAG
*
68136849 AATCCCTGAAGGATATAG
1 AATCCCAGAAGGATATAG
68136867 A
1 A
68136868 GTTTCCCAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (18 bp):
AATCCCAGAAGGATATAG
Found at i:68141517 original size:15 final size:16
Alignment explanation
Indices: 68141486--68141523 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
68141476 GAATATTACA
*
68141486 TTATTACATCTAATAT
1 TTATTACATCCAATAT
68141502 TTATTA-ATCCAATAT
1 TTATTACATCCAATAT
68141517 TATATTA
1 T-TATTA
68141524 GAGACTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (16 bp):
TTATTACATCCAATAT
Found at i:68143941 original size:19 final size:20
Alignment explanation
Indices: 68143906--68143943 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
68143896 ATAGTGAGAA
*
68143906 TATATTTTCTAAGAATAAAT
1 TATATCTTCTAAGAATAAAT
68143926 TATATCTTCT-AGAATAAA
1 TATATCTTCTAAGAATAAA
68143944 AATTCTACCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (20 bp):
TATATCTTCTAAGAATAAAT
Found at i:68144867 original size:464 final size:464
Alignment explanation
Indices: 68143999--68144907 Score: 1613
Period size: 464 Copynumber: 2.0 Consensus size: 464
68143989 GATGGAATGC
* *
68143999 GCAAGTATACACAGTCACTATTAACTAATAAGTGAGTAAAAAGAGTATAGTCTCCATAGGGACTG
1 GCAAGTATACACAGTCACTATCAACGAATAAGTGAGTAAAAAGAGTATAGTCTCCATAGGGACTG
68144064 TATTGATAAACAACAATTGTAAAATTAATGTTTGACAAGTTGGTTATGAAAATAAAATATTTGAT
66 TATTGATAAACAACAATTGTAAAATTAATGTTTGACAAGTTGGTTATGAAAATAAAATATTTGAT
*
68144129 GGTGATAAATGTCCAAATTAAATTGACAACTAATATGCAAATGAAATAGAATAAAATGCAATGGA
131 GGTGATAAATGTCCAAATTAAATTGACAACTAATATGCAAATGAAATAAAATAAAATGCAATGGA
68144194 ATGTTTAACAACAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACTC
196 ATGTTTAACAACAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACTC
* * *
68144259 TTAATTCGATTCATTCATCATTATGCTTAGCAAACGTTCCGAAAAAATTTCATGGCAACTCGATT
261 TTAATTCAATTCATTCATCATCATGCTTAGCAAACGTTCCGAAAAAATTTCATGGCAACCCGATT
68144324 ATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCATATATTTATCACTTAGAAAAA
326 ATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCATATATTTATCACTTAGAAAAA
68144389 CATGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAATAGGACAGGT
391 CATGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAATAGGACAGGT
68144454 CAAGAATAT
456 CAAGAATAT
* *
68144463 GCAAGTATACACAGTCACTATCAAGGAATAAGTGAGTAAAAGGAGTATAGTCTCCATAGGGACTG
1 GCAAGTATACACAGTCACTATCAACGAATAAGTGAGTAAAAAGAGTATAGTCTCCATAGGGACTG
* *
68144528 TATTGATAAACAACAGTTGTAAAATTAATGTTTTACAAGTTGGTTATGAAAATAAAATATTTGAT
66 TATTGATAAACAACAATTGTAAAATTAATGTTTGACAAGTTGGTTATGAAAATAAAATATTTGAT
*
68144593 GGTGATAAATGTCCTAATTAAATTGACAACTAATATGCAAAT-AAGATAAAATAAAATGCAATGG
131 GGTGATAAATGTCCAAATTAAATTGACAACTAATATGCAAATGAA-ATAAAATAAAATGCAATGG
* * *
68144657 AATGTTTAGCAGCAATTGACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACT
195 AATGTTTAACAACAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACT
* * **
68144722 CTTAATTCAATTCATTCATCATCATGCTTAGCGAACGTTTCGAAAATTTTTCATGGCAACCCGAT
260 CTTAATTCAATTCATTCATCATCATGCTTAGCAAACGTTCCGAAAAAATTTCATGGCAACCCGAT
*
68144787 TATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCTTATATTTATCACTTAGAAAA
325 TATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCATATATTTATCACTTAGAAAA
**
68144852 ATGTGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAA
390 ACATGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAA
68144908 CATGGACAAG
Statistics
Matches: 423, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
463 2 0.00
464 421 1.00
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (464 bp):
GCAAGTATACACAGTCACTATCAACGAATAAGTGAGTAAAAAGAGTATAGTCTCCATAGGGACTG
TATTGATAAACAACAATTGTAAAATTAATGTTTGACAAGTTGGTTATGAAAATAAAATATTTGAT
GGTGATAAATGTCCAAATTAAATTGACAACTAATATGCAAATGAAATAAAATAAAATGCAATGGA
ATGTTTAACAACAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACTC
TTAATTCAATTCATTCATCATCATGCTTAGCAAACGTTCCGAAAAAATTTCATGGCAACCCGATT
ATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCATATATTTATCACTTAGAAAAA
CATGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAATAGGACAGGT
CAAGAATAT
Found at i:68159399 original size:19 final size:19
Alignment explanation
Indices: 68159358--68159399 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
68159348 TTATTAAAAC
*
68159358 TTAATTAACCATAATTTAT
1 TTAATTAACCATAATTTAA
*
68159377 TTAATTAAACCTTAA-TTAA
1 TTAATT-AACCATAATTTAA
68159396 TTAA
1 TTAA
68159400 AAGTTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (19 bp):
TTAATTAACCATAATTTAA
Found at i:68163062 original size:75 final size:76
Alignment explanation
Indices: 68162900--68163071 Score: 240
Period size: 75 Copynumber: 2.3 Consensus size: 76
68162890 CTTACTTTTC
* * ***
68162900 ATTAATAAGGGAATAATCCTATATTCTTTTAGAAAGAATATAATTCCTTTTTTTCTAACTTTTTG
1 ATTAATAAGGGAATAATCCTAAATTCTTTTAGAAAGAATATAATTCC-TATTTTCTAACTTTCCA
* *
68162965 TTTGCCTTCTTT
65 TTTGCATTCTCT
*
68162977 ATTAATAAGGGAATAATCCTAAATTCTTTTGGGAAAGAATATAATT-C-ATTTTCTAACTTTCCA
1 ATTAATAAGGGAATAATCCTAAATTCTTTT-AGAAAGAATATAATTCCTATTTTCTAACTTTCCA
68163040 TTTGCATTCTCT
65 TTTGCATTCTCT
68163052 ATTAATAAGGGAATAATCCT
1 ATTAATAAGGGAATAATCCT
68163072 GGTTTTCCTT
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
75 42 0.49
77 30 0.35
78 14 0.16
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (76 bp):
ATTAATAAGGGAATAATCCTAAATTCTTTTAGAAAGAATATAATTCCTATTTTCTAACTTTCCAT
TTGCATTCTCT
Found at i:68168011 original size:27 final size:27
Alignment explanation
Indices: 68167981--68168034 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
68167971 TGTTTAGGTA
68167981 AATAAACTTTAGGATTCTGATTTATTT
1 AATAAACTTTAGGATTCTGATTTATTT
68168008 AATAAACTTTAGGATTCTGATTTATTT
1 AATAAACTTTAGGATTCTGATTTATTT
68168035 CAGATTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.48
Consensus pattern (27 bp):
AATAAACTTTAGGATTCTGATTTATTT
Found at i:68180915 original size:19 final size:20
Alignment explanation
Indices: 68180891--68180930 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
68180881 GAAAATATTC
*
68180891 TGAATTAGCTTTTTG-AAAT
1 TGAATTAGCTGTTTGCAAAT
*
68180910 TGAATTTGCTGTTTGCAAAT
1 TGAATTAGCTGTTTGCAAAT
68180930 T
1 T
68180931 ACTTCATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.47
Consensus pattern (20 bp):
TGAATTAGCTGTTTGCAAAT
Found at i:68192697 original size:15 final size:14
Alignment explanation
Indices: 68192677--68192710 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
68192667 GATAAGTGAA
68192677 ATGAAAGTGATGGTT
1 ATGAAAG-GATGGTT
68192692 ATGAAAAGGATGGTT
1 ATG-AAAGGATGGTT
68192707 ATGA
1 ATGA
68192711 GGTGTGAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.06
15 13 0.72
16 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.29
Consensus pattern (14 bp):
ATGAAAGGATGGTT
Found at i:68194644 original size:21 final size:21
Alignment explanation
Indices: 68194620--68194660 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
68194610 CTCACGCAAA
68194620 TTCTC-CTCCTCCTCTTTTTTC
1 TTCTCTCTCCTCCT-TTTTTTC
*
68194641 TTCTCTCTCCTTCTTTTTTT
1 TTCTCTCTCCTCCTTTTTTT
68194661 GGGTAGATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (21 bp):
TTCTCTCTCCTCCTTTTTTTC
Found at i:68197218 original size:20 final size:20
Alignment explanation
Indices: 68197193--68197233 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
68197183 GACTTATATC
68197193 TCATATAGCATCATCAAACA
1 TCATATAGCATCATCAAACA
68197213 TCATATAGCATCATCAAACA
1 TCATATAGCATCATCAAACA
68197233 T
1 T
68197234 TCTTACTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.24, G:0.05, T:0.27
Consensus pattern (20 bp):
TCATATAGCATCATCAAACA
Found at i:68201995 original size:94 final size:94
Alignment explanation
Indices: 68201872--68202154 Score: 277
Period size: 104 Copynumber: 2.9 Consensus size: 94
68201862 AAGTGATGCT
*
68201872 TGGTAGGAAATACTGATTTTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCTAG
1 TGGTAGGCAATACTGA-TTTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCTAG
*
68201937 GGTTTAATTGCAATCAATCAGGT-TTTCA-A
65 GGTTTAATTGCAATCAATCA-CTATTTCATA
* * * *
68201966 -GGATAGGCAATACTGATTTCAGGTTAATTCAC-ACCTATATGACTTCCTAGGATTGTCAATCCT
1 TGG-TAGGCAATACTGATTT-GGGTTAATTC-CTACCTAAATAACTTCCTAGGGTTGTCAATCCT
* * ** * *
68202029 AGGGTTTACGTTCTTCCTTCCCTAACCACTAATTTGATA
63 AGGGTTTA--AT-TGCAAT--C-AATCACT-ATTTCATA
*
68202068 CTTGGTAGGCAATACTAATCTTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCT
1 --TGGTAGGCAATACTGAT-TTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCT
*
68202133 AGGGTTTAATTGCACTCAATCA
63 AGGGTTTAATTGCAATCAATCA
68202155 AATCTAACCA
Statistics
Matches: 150, Mismatches: 22, Indels: 30
0.74 0.11 0.15
Matches are distributed among these distances:
93 5 0.03
94 57 0.38
95 1 0.01
96 1 0.01
97 3 0.02
98 4 0.03
99 3 0.02
100 4 0.03
101 7 0.05
102 2 0.01
103 1 0.01
104 58 0.39
105 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (94 bp):
TGGTAGGCAATACTGATTTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCTAGG
GTTTAATTGCAATCAATCACTATTTCATA
Found at i:68202686 original size:20 final size:21
Alignment explanation
Indices: 68202639--68202686 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
68202629 ACCAGAAGTT
*
68202639 ATGTTGCAACATAGGCCTACG
1 ATGTTGCAACATAGGCATACG
* *
68202660 GTGTTGCAACATAGG-ATCCG
1 ATGTTGCAACATAGGCATACG
68202680 ATGTTGC
1 ATGTTGC
68202687 GATATAGTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (21 bp):
ATGTTGCAACATAGGCATACG
Found at i:68205588 original size:20 final size:20
Alignment explanation
Indices: 68205563--68205601 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
68205553 TATCATGATC
68205563 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TACTTACTTG
68205583 TTTACTTACTTACTTACTT
1 TTTACTTACTTACTTACTT
68205602 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.18, C:0.23, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTACTTACTTG
Found at i:68205868 original size:50 final size:50
Alignment explanation
Indices: 68205795--68205938 Score: 164
Period size: 50 Copynumber: 2.9 Consensus size: 50
68205785 TCCTGTACTA
* * * * * **
68205795 CCAATGCCATATCTCATATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATATCGGTG
* * * * *
68205845 CCCATGCCATGT-TCTAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAACGCCATGTCTC-AAACATGGTCTTACGTGGGACCTCTCATATCGGTG
68205895 CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATA
1 CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATA
68205939 ATCTCAATAA
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.03
50 74 0.95
51 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATATCGGTG
Found at i:68209151 original size:50 final size:49
Alignment explanation
Indices: 68209073--68209203 Score: 163
Period size: 50 Copynumber: 2.6 Consensus size: 49
68209063 ATGTCATATC
* * ** * *
68209073 CTAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTT
1 CTAGACATGGTCTTACGTGGGACCTCTCATATCGGTGCCAACGCCATG-T
* *
68209123 CTAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATGT
1 CTAGACATGGTCTTACGTGGGACCTCTCATATCGGTGCCAACGCCATGT
*
68209172 CTCAAACATGGTCTTACGTGGGACCTCTCATA
1 CT-AGACATGGTCTTACGTGGGACCTCTCATA
68209204 ATCTCAATAA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
49 3 0.04
50 66 0.96
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.29
Consensus pattern (49 bp):
CTAGACATGGTCTTACGTGGGACCTCTCATATCGGTGCCAACGCCATGT
Found at i:68213416 original size:20 final size:20
Alignment explanation
Indices: 68213391--68213429 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
68213381 TATCATGATC
68213391 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TACTTACTTG
68213411 TTTACTTACTTACTTACTT
1 TTTACTTACTTACTTACTT
68213430 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.18, C:0.23, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTACTTACTTG
Found at i:68213696 original size:50 final size:50
Alignment explanation
Indices: 68213623--68213766 Score: 164
Period size: 50 Copynumber: 2.9 Consensus size: 50
68213613 TCCTGTACTA
* * * * * **
68213623 CCAATGCCATATCTCATATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATATCGGTG
* * * * *
68213673 CCCATGCCATGT-TCTAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAACGCCATGTCTC-AAACATGGTCTTACGTGGGACCTCTCATATCGGTG
68213723 CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATA
1 CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATA
68213767 ATCTCAATAA
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.03
50 74 0.95
51 2 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATATCGGTG
Found at i:68218034 original size:40 final size:40
Alignment explanation
Indices: 68217990--68218176 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
68217980 GCTCCTCGTT
* *
68217990 CAAATGCCTTCGAAACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATT-TAGT-ATCTCGCA
* * *
68218030 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTATCTCGCA
* *
68218070 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTATCTCGCA
* *
68218110 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTATCTCGCA
* *
68218150 CAAATGCCTTCGGATCTTAGTCCGGAT
1 CAAATGCCTTCGGAACTTAGCCCGGAT
68218177 ATTGTAACAC
Statistics
Matches: 133, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 130 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGAACTTAGCCCGGATTTAGTATCTCGCA
Found at i:68219637 original size:79 final size:78
Alignment explanation
Indices: 68219535--68219757 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
68219525 GCTCCTCGTT
* *
68219535 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
68219600 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
68219615 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
68219679 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
68219693 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
68219756 GA
63 GA
68219758 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:68219652 original size:39 final size:40
Alignment explanation
Indices: 68219535--68219757 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
68219525 GCTCCTCGTT
* *
68219535 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
68219575 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
68219615 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
68219654 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
68219693 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
68219734 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68219758 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:68227556 original size:40 final size:40
Alignment explanation
Indices: 68227512--68227773 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
68227502 GCTCCTCGTT
* *
68227512 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
68227552 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68227592 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68227631 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
68227670 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
68227709 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
68227750 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68227774 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:68235586 original size:79 final size:82
Alignment explanation
Indices: 68235475--68235659 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
68235465 GCTACTCGTT
* *
68235475 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
68235538 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
68235555 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
68235618 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
68235635 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68235660 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:68235659 original size:40 final size:40
Alignment explanation
Indices: 68235456--68235659 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
68235446 CGGAATTTAA
** *
68235456 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68235496 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
68235536 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68235575 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
68235615 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68235655 CCGGA
1 CCGGA
68235660 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:68250022 original size:527 final size:526
Alignment explanation
Indices: 68249030--68250087 Score: 1845
Period size: 527 Copynumber: 2.0 Consensus size: 526
68249020 ATTTGAGGTT
* * *
68249030 TACCTTCAGATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTTAATGGTCAATCTGAGC
1 TACCTTCAAATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTCAATGGTCAATCTAAGC
*
68249095 TAGTACTCCAAGTACTCGAAGACATGTTGTGTTTTTGCATAACTGAATTTGAGGGAAGCTGGGAA
66 TAGTACTCCAAGTACTCGAAGACATCTTGTGTTTTTGCATAACTGAATTTGAGGGAAGCTGGGAA
*
68249160 ATATTTTTACCGTGGTTAAATTTGCATTCAATAATAGCTATCAATCGAGCATCAAAATGGCACCT
131 ATATTTTTACCGTGGTGAAATTTGCATTCAATAATAGCTATCAATCGAGCATCAAAATGGCACCT
68249225 TACAAATATTTATATGGTCGTAAATGTCAAACTCATCTATGTTCGTTAGAATTGAGTGAAAGAAA
196 TACAAATATTTATATGGTCGTAAATGTCAAACTCATCTATGTTCGTTAGAATTGAGTGAAAGAAA
68249290 AATAGCAAGAAGAGACTTGATGCGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCCTTAA
261 AATAGCAAGAAGAGACTTGATGCGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCCTTAA
*
68249355 AAGTTGCATCTAGTAGACAAAAATCTTACACTGACCTAAAAATAAAGGGTATCGAGTTTAAAATT
326 AAGTTGCATCTAGTAGACAAAAATCTTACACTGACCTAAAAATAAAGAGTATCGAGTTTAAAATT
*
68249420 GGTGATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTCGGTAGAAAAAGGAA
391 GGTGATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTCGGTACAAAAAGGAA
*
68249485 GCACGGTCCAAGGTTCATTAGACCGTATGAAAGTCTC-AAAGCAATTGGGCCTACAGCATACCGT
456 GCACGGTCCAAGGTTCATTAGACAGTATGAAAGTCTCAAAAG-AATTGGGCCTACAGCATACCGT
68249549 TTAGCCC
520 TTAGCCC
68249556 TACCTTCAAATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTCAATGGTCAATCTAAG-
1 TACCTTCAAATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTCAATGGTCAATCTAAGC
* *
68249620 TGAGTACTCCAAGTACTCGAAGACATCTTGTGTTTTTGCGTAATTGAATTTGAGGGAAGCTGGG-
66 T-AGTACTCCAAGTACTCGAAGACATCTTGTGTTTTTGCATAACTGAATTTGAGGGAAGCTGGGA
* *
68249684 AATGATTTTTACCGATGGTGAAATTTGCATTCAATAATAGCTATCAATCTAGCATCAAAATGGTG
130 AAT-ATTTTTACCG-TGGTGAAATTTGCATTCAATAATAGCTATCAATCGAGCATCAAAATGG-C
* * * *
68249749 A-CTTACGAATATTTATATGGTCGTAAATTTCAAACTCCTCTATGTTGGTTAGAATTGAGTGAAA
192 ACCTTACAAATATTTATATGGTCGTAAATGTCAAACTCATCTATGTTCGTTAGAATTGAGTGAAA
* *
68249813 GAAAAATAGCAAGAATAGACTTGATGTGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCC
257 GAAAAATAGCAAGAAGAGACTTGATGCGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCC
*
68249878 TTAAAAGTTGCATCTAGTAGACAAAAATCTTACGCTGACCTAAAAATAAAGAGTATCGAGTTTAA
322 TTAAAAGTTGCATCTAGTAGACAAAAATCTTACACTGACCTAAAAATAAAGAGTATCGAGTTTAA
* *
68249943 AATTGGTGATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTTGGTACAAAAG
387 AATTGGTGATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTCGGTACAAAAA
*
68250008 GGAAGCACGGTCCAAGGTTCATTAGACAGTATGAAAGTCTCAAAAGAATTGGGCCTATAGCATAC
452 GGAAGCACGGTCCAAGGTTCATTAGACAGTATGAAAGTCTCAAAAGAATTGGGCCTACAGCATAC
68250073 CGTTTAGCCC
517 CGTTTAGCCC
68250083 TACCT
1 TACCT
68250088 CCAGAGTTGG
Statistics
Matches: 505, Mismatches: 22, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
525 4 0.01
526 130 0.26
527 366 0.72
528 5 0.01
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (526 bp):
TACCTTCAAATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTCAATGGTCAATCTAAGC
TAGTACTCCAAGTACTCGAAGACATCTTGTGTTTTTGCATAACTGAATTTGAGGGAAGCTGGGAA
ATATTTTTACCGTGGTGAAATTTGCATTCAATAATAGCTATCAATCGAGCATCAAAATGGCACCT
TACAAATATTTATATGGTCGTAAATGTCAAACTCATCTATGTTCGTTAGAATTGAGTGAAAGAAA
AATAGCAAGAAGAGACTTGATGCGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCCTTAA
AAGTTGCATCTAGTAGACAAAAATCTTACACTGACCTAAAAATAAAGAGTATCGAGTTTAAAATT
GGTGATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTCGGTACAAAAAGGAA
GCACGGTCCAAGGTTCATTAGACAGTATGAAAGTCTCAAAAGAATTGGGCCTACAGCATACCGTT
TAGCCC
Found at i:68251486 original size:30 final size:30
Alignment explanation
Indices: 68251422--68251493 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
68251412 AGAATGTCAC
* * *
68251422 CTTGTGTGAGCAACTCTATCATGACGTCAG
1 CTTGTGTGAGCAACCCTATCATGACATCAA
68251452 CTTGTGTGAGCAACCCTGAT-AT-ACTATCAA
1 CTTGTGTGAGCAACCCT-ATCATGAC-ATCAA
68251482 CTTGTGTGAGCA
1 CTTGTGTGAGCA
68251494 TCTTATTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 2 0.05
30 33 0.89
31 2 0.05
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (30 bp):
CTTGTGTGAGCAACCCTATCATGACATCAA
Found at i:68253643 original size:39 final size:39
Alignment explanation
Indices: 68253584--68253696 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
68253574 TTTTAATTGT
* *
68253584 TGTGATATATACGAATATTGTGATATATGCTTAAATATTA
1 TGTGAT-TATATGAGTATTGTGATATATGCTTAAATATTA
*
68253624 TGTGATTATATGAGTATTGTGATATATGCTTAAATTTTA
1 TGTGATTATATGAGTATTGTGATATATGCTTAAATATTA
* *
68253663 TGTGATTATATGTGTAATGTGATATATGCTTAAA
1 TGTGATTATATGAGTATTGTGATATATGCTTAAA
68253697 AGTGAATATG
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 62 0.91
40 6 0.09
ACGTcount: A:0.34, C:0.04, G:0.18, T:0.45
Consensus pattern (39 bp):
TGTGATTATATGAGTATTGTGATATATGCTTAAATATTA
Found at i:68256493 original size:10 final size:10
Alignment explanation
Indices: 68256478--68256509 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
68256468 GTGAGTGTTT
68256478 TTTATATTTA
1 TTTATATTTA
68256488 TTTATATTTA
1 TTTATATTTA
68256498 TTT-TATTT-
1 TTTATATTTA
68256506 TTTA
1 TTTA
68256510 AAAAGGGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 3 0.14
9 5 0.24
10 13 0.62
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTATATTTA
Found at i:68260371 original size:22 final size:22
Alignment explanation
Indices: 68260346--68260388 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
68260336 AACTTAATTC
*
68260346 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
68260368 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
68260389 AGGAGCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:68275272 original size:29 final size:27
Alignment explanation
Indices: 68275234--68275292 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
68275224 ACTTATCTAC
* *
68275234 TTTTCTTAAATTGATACTTTTAATTTTTT
1 TTTTCCTAAATTGATA--TCTAATTTTTT
*
68275263 TTTTCCTAAATTGTTATCTAATTTTTT
1 TTTTCCTAAATTGATATCTAATTTTTT
68275290 TTT
1 TTT
68275293 CTTTCATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 13 0.48
29 14 0.52
ACGTcount: A:0.22, C:0.08, G:0.03, T:0.66
Consensus pattern (27 bp):
TTTTCCTAAATTGATATCTAATTTTTT
Found at i:68276828 original size:258 final size:258
Alignment explanation
Indices: 68276361--68277663 Score: 2435
Period size: 258 Copynumber: 5.0 Consensus size: 258
68276351 CTTTTAAAAT
* * * *
68276361 AATTTTAGGTCTGTGAATTTTGAGAAAAACAAGTTCGGGAGTCGGTTATGCACGAAGAAGAGTTA
1 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
* *
68276426 GCACCCTCGTGACGCCCAAAATTGGTACCGAATTGATTATTTAATATCTTAATGTCAAAATTTTA
66 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTG---A-TT-A-ATCTTAATGTCAAAATTTTG
*
68276491 AAAAGGTTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTAT
125 AAAAGTTTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTAT
68276556 TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAG
190 TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAG
68276621 TTTG
255 TTTG
68276625 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
1 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
68276690 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
66 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
68276755 TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTATTTCAAA
131 TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTATTTCAAA
68276820 GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAGTTTG
196 GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAGTTTG
68276883 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
1 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
68276948 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
66 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
68277013 TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTATTTCAAA
131 TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTATTTCAAA
68277078 GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAGTTTG
196 GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAGTTTG
68277141 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
1 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
68277206 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
66 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
68277271 TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTATTTCAAA
131 TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTATTTCAAA
68277336 GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAGTTTG
196 GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAGTTTG
* *
68277399 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTTGGGAGTCGGTTACGCACGAGGAAGAGTTA
1 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
68277464 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
66 GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
* *
68277529 TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGGATGATAAAGCTCATTTATTTCAAA
131 TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTATTTCAAA
*
68277594 GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAATTTG
196 GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAGTTTG
*
68277657 ACTTTTA
1 AATTTTA
68277664 AAACCTATAC
Statistics
Matches: 1026, Mismatches: 13, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
258 927 0.90
259 1 0.00
260 2 0.00
261 1 0.00
264 95 0.09
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (258 bp):
AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGAGAGTCGGTTACGCACGAGGAAGAGTTA
GCACCCTCGTGACGCCCAAAATTGGTACTGAATTGATTAATCTTAATGTCAAAATTTTGAAAAGT
TTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTATTTCAAA
GAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAGTTTG
Found at i:68277953 original size:78 final size:78
Alignment explanation
Indices: 68277824--68277978 Score: 274
Period size: 78 Copynumber: 2.0 Consensus size: 78
68277814 AAAACAATAT
* * *
68277824 GTCATATTCAATGCGTTAGGATATAACGTATTGAATTCCCGAGAGTGAGCTTTTTATTCGTGTGT
1 GTCATATTCAATGCGTTAGGACATAACGCATCGAATTCCCGAGAGTGAGCTTTTTATTCGTGTGT
*
68277889 TAATTAATAAGGA
66 TAATTAAAAAGGA
68277902 GTCATATTCAATGCGTTAGGACATAACGCATCGAATTCCCGAGAGTGAGCTTTTTATTCGTGTGT
1 GTCATATTCAATGCGTTAGGACATAACGCATCGAATTCCCGAGAGTGAGCTTTTTATTCGTGTGT
68277967 TAATTAAAAAGG
66 TAATTAAAAAGG
68277979 TTATTCGGTT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.35
Consensus pattern (78 bp):
GTCATATTCAATGCGTTAGGACATAACGCATCGAATTCCCGAGAGTGAGCTTTTTATTCGTGTGT
TAATTAAAAAGGA
Found at i:68279324 original size:100 final size:100
Alignment explanation
Indices: 68279202--68279834 Score: 845
Period size: 100 Copynumber: 6.3 Consensus size: 100
68279192 TAACTCGTAA
* * * * * *
68279202 CTTTAAT-TTGTTTAACTGCAATGTCGGGGAAGTAAGATTCGCAGTTGTAGCTTCAATCTGTTCC
1 CTTTAATCTT-TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * * * * *
68279266 ACTACACCGCTAGGGAAGTGAGATTTGCAGTTGTGG
65 ACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * *
68279302 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCGAGATTCACCGATGTGACTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
*
68279367 CTGCACCGCCAGGAAAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * * **
68279402 CTTTTATATTTTTAACTGCAATGTCGGGTAAGCAAGATTCATTGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
68279467 CTGCACCGCCAGGGAAATAAGATTCGCTGTTCTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* *
68279502 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * *
68279567 CTGTATCGCCTGGGGAGTAAGATTTGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
*
68279602 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* ** * * *
68279667 GTGCATTGCCTGGGGAGTAAGATTCGCTGTGGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
** *
68279702 CTTTAATCTTTTTAACTGCAATGTTTGGGAAGCAAGATTCACCGATGTGGCTTTAACCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* ** *
68279767 CTACACTACCAGGGAAGTAAGATTCGCTGTGGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
*
68279802 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
68279835 CTTTAACCTG
Statistics
Matches: 472, Mismatches: 60, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
100 470 1.00
101 2 0.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.33
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
Found at i:68279558 original size:200 final size:199
Alignment explanation
Indices: 68279202--68279958 Score: 929
Period size: 200 Copynumber: 3.9 Consensus size: 199
68279192 TAACTCGTAA
* * * * *
68279202 CTTTAAT-TTGTTTAACTGCAATGTCGGGGAAGTAAGATTCGCAGTTGTAGCTTCAATCTGTTCC
1 CTTTAATCTT-TTTAACTGCAATGTCGGGGAAGCAAGATTCAC-GATGTGGCTTTAATCTGTTCC
* * * * * *
68279266 ACTACACCGCTAGGGAAGTGAGATTTGCAGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGAGG
64 ACTACACCGCCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGAGG
* * *
68279331 AAGCGAGATTCACCGATGTGACTTTAATCTGTTCCACTGCACCGCCAGGAAAGTAAGATTCGCTG
129 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTG
68279396 TTGTAG
194 TTGTAG
* * * *
68279402 CTTTTATATTTTTAACTGCAATGTCGGGTAAGCAAGATTCATTGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA-CGATGTGGCTTTAATCTGTTCCA
* * **
68279467 CTGCACCGCCAGGGAAATAAGATTCGCTGTTCTAGCTTTAATCTTTTTAACTGCAATGTCGAGGA
65 CTACACCGCCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGA
* * * * * *
68279532 AGCAAGATTCACCGATGTGGCTTTAATCTGCTCCACTGTATCGCCTGGGGAGTAAGATTTGCTGT
130 AGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGT
68279597 TGTAG
195 TGTAG
*
68279602 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA-CGATGTGGCTTTAATCTGTTCCA
* * ** * * *
68279667 GTGCATTGCCTGGGGAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTTTG-GG
65 CTACACCGCCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATG-TCGAGG
* * **
68279731 AAGCAAGATTCACCGATGTGGCTTTAACCTGTTCCACTACACTACCAGGGAAGTAAGATTCGCTG
129 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTG
*
68279796 TGGTAG
194 TTGTAG
* *
68279802 CTTTAATCTTTTTAACTGCAATGTC---G-AG---G----A--A---GCCTTTAACCTGTTCCAC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACGATGTGGCTTTAATCTGTTCCAC
** *
68279851 TACACTACCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAA
66 TACACCGCCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAA
68279916 GCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGC
131 GCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGC
68279959 TTGAGAAGTG
Statistics
Matches: 488, Mismatches: 65, Indels: 25
0.84 0.11 0.04
Matches are distributed among these distances:
182 2 0.00
183 109 0.22
186 1 0.00
189 1 0.00
193 1 0.00
196 2 0.00
197 1 0.00
200 367 0.75
201 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (199 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACGATGTGGCTTTAATCTGTTCCAC
TACACCGCCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAA
GCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTT
GTAG
Found at i:68279891 original size:83 final size:83
Alignment explanation
Indices: 68279752--68279917 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
68279742 ACCGATGTGG
68279752 CTTTAACCTGTTCCACTACACTACCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAA
1 CTTTAACCTGTTCCACTACACTACCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAA
68279817 CTGCAATGTCGAGGAAGC
66 CTGCAATGTCGAGGAAGC
68279835 CTTTAACCTGTTCCACTACACTACCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAA
1 CTTTAACCTGTTCCACTACACTACCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAA
*
68279900 CTGCAATGTCGGGGAAGC
66 CTGCAATGTCGAGGAAGC
68279918 AAGATTCACC
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (83 bp):
CTTTAACCTGTTCCACTACACTACCAGGGAAGTAAGATTCGCTGTGGTAGCTTTAATCTTTTTAA
CTGCAATGTCGAGGAAGC
Found at i:68281281 original size:7 final size:7
Alignment explanation
Indices: 68281269--68281310 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
68281259 TTAGCCTCTC
68281269 CATTTTT
1 CATTTTT
68281276 CATTTTT
1 CATTTTT
68281283 CATTTTT
1 CATTTTT
*
68281290 TA-TTTT
1 CATTTTT
68281296 CATTTTT
1 CATTTTT
68281303 CCATTTTT
1 -CATTTTT
68281311 TTTGTTTCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
6 5 0.16
7 19 0.61
8 7 0.23
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:68281295 original size:13 final size:14
Alignment explanation
Indices: 68281269--68281310 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
68281259 TTAGCCTCTC
68281269 CATTTTTCATTTTT
1 CATTTTTCATTTTT
*
68281283 CATTTTTTA-TTTT
1 CATTTTTCATTTTT
68281296 CATTTTTCCATTTTT
1 CATTTTT-CATTTTT
68281311 TTTGTTTCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 11 0.46
14 9 0.38
15 4 0.17
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:68281297 original size:20 final size:21
Alignment explanation
Indices: 68281272--68281311 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
68281262 GCCTCTCCAT
68281272 TTTTCATTTTT-CATTTTTTA
1 TTTTCATTTTTCCATTTTTTA
68281292 TTTTCATTTTTCCATTTTTT
1 TTTTCATTTTTCCATTTTTT
68281312 TTGTTTCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTCATTTTTCCATTTTTTA
Found at i:68289523 original size:30 final size:31
Alignment explanation
Indices: 68289484--68289543 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
68289474 AGAGGTGAGA
*
68289484 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
68289515 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
68289544 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:68294027 original size:11 final size:10
Alignment explanation
Indices: 68294005--68294042 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
68293995 AAAAAATGAG
*
68294005 AGAAAAAGAA
1 AGAAAAAAAA
68294015 AGAAGAAAAAA
1 AGAA-AAAAAA
68294026 AG-AAAAAAA
1 AGAAAAAAAA
68294035 AGAAAAAA
1 AGAAAAAA
68294043 GGAAATCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 8 0.32
10 10 0.40
11 7 0.28
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AGAAAAAAAA
Found at i:68294040 original size:15 final size:16
Alignment explanation
Indices: 68294005--68294041 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
68293995 AAAAAATGAG
*
68294005 AGAAAAAGAAAGAAGA
1 AGAAAAAGAAAGAAAA
68294021 A-AAAAAGAAA-AAAA
1 AGAAAAAGAAAGAAAA
68294035 AGAAAAA
1 AGAAAAA
68294042 AGGAAATCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 4 0.21
15 14 0.74
16 1 0.05
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AGAAAAAGAAAGAAAA
Found at i:68294947 original size:6 final size:6
Alignment explanation
Indices: 68294936--68294975 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
68294926 TGAGTAAAAA
*
68294936 AAAATC AAAATC AAAATC AAAATC AAAATC AAAGTC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
68294976 GAAAAAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.68, C:0.15, G:0.03, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:68294981 original size:18 final size:18
Alignment explanation
Indices: 68294942--68294981 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
68294932 AAAAAAAATC
**
68294942 AAAATCAAAATCAAAATC
1 AAAATCAAAATCAAAAGA
*
68294960 AAAATCAAAGTCAAAAGA
1 AAAATCAAAATCAAAAGA
68294978 AAAA
1 AAAA
68294982 AAGAGAAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.70, C:0.12, G:0.05, T:0.12
Consensus pattern (18 bp):
AAAATCAAAATCAAAAGA
Found at i:68295892 original size:7 final size:7
Alignment explanation
Indices: 68295880--68295933 Score: 85
Period size: 7 Copynumber: 8.0 Consensus size: 7
68295870 TCTGAGTCAA
68295880 AAAAATG
1 AAAAATG
68295887 AAAAATG
1 AAAAATG
*
68295894 -AGAATG
1 AAAAATG
68295900 AAAAATG
1 AAAAATG
68295907 AAAAATG
1 AAAAATG
68295914 -AAAATG
1 AAAAATG
68295920 AAAAATG
1 AAAAATG
68295927 AAAAATG
1 AAAAATG
68295934 GAGAGGCTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 11 0.26
7 32 0.74
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:68295901 original size:13 final size:14
Alignment explanation
Indices: 68295880--68295933 Score: 85
Period size: 13 Copynumber: 4.0 Consensus size: 14
68295870 TCTGAGTCAA
68295880 AAAAATGAAAAATG
1 AAAAATGAAAAATG
*
68295894 -AGAATGAAAAATG
1 AAAAATGAAAAATG
68295907 AAAAATG-AAAATG
1 AAAAATGAAAAATG
68295920 AAAAATGAAAAATG
1 AAAAATGAAAAATG
68295934 GAGAGGCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
13 25 0.69
14 11 0.31
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:68295903 original size:20 final size:20
Alignment explanation
Indices: 68295880--68295933 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
68295870 TCTGAGTCAA
*
68295880 AAAAATGAAAAATGAGAATG
1 AAAAATGAAAAATGAAAATG
68295900 AAAAATGAAAAATGAAAATG
1 AAAAATGAAAAATGAAAATG
68295920 AAAAATGAAAAATG
1 AAAAATGAAAAATG
68295934 GAGAGGCTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (20 bp):
AAAAATGAAAAATGAAAATG
Found at i:68297403 original size:43 final size:44
Alignment explanation
Indices: 68297317--68297411 Score: 108
Period size: 43 Copynumber: 2.2 Consensus size: 44
68297307 AAGCAGTGGC
68297317 GGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGT
1 GGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGT
* * *
68297361 AGG-GCAGACTGAAGAAGA-AA-TCTTATCTCCCT-AAGATTACAGT
1 -GGAGCAGACTG-AGAAAACAAGTCTTATCCCCCTGAAG-TCACAGT
68297404 GGAGCAGA
1 GGAGCAGA
68297412 TGGAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
42 5 0.11
43 22 0.50
44 10 0.23
45 7 0.16
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (44 bp):
GGAGCAGACTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGT
Found at i:68297550 original size:141 final size:142
Alignment explanation
Indices: 68297376--68297690 Score: 499
Period size: 142 Copynumber: 2.2 Consensus size: 142
68297366 AGACTGAAGA
* *
68297376 AGAAATCTTATCTCCCTAAGATTACAGTGGAGCAGATGGAATCTAGTAATCCTACCTCCCTGAGA
1 AGAAATCTTATCTCCCTAAGATTACAGTGGAGCAAATGGAAGCTAGTAATCCTACCTCCCTGAGA
* *
68297441 TTACAGTGGAGCGGA-TAAAATAAAAGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCAT
66 TTACAGTGGAGCGGATTAAAATAAAAGATCTTACCTCTCTGAGGTTACAGTAGAGTAGATCACAT
*
68297505 TAGATTGAAGCC-
131 CAGATTGAA-CCT
* * * *
68297517 AGAAATCTTATCTCCCTTAGATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 AGAAATCTTATCTCCCTAAGATTACAGTGGAGCAAATGGAAGCTAGTAATCCTACCTCCCTGAGA
* *
68297582 TTACAGTGGAGTGGATTAAAATAAAGGATCTTACCTCTCTGAGGTTACAGTAGAGTAGATCACAT
66 TTACAGTGGAGCGGATTAAAATAAAAGATCTTACCTCTCTGAGGTTACAGTAGAGTAGATCACAT
68297647 CAGATTGAACCT
131 CAGATTGAACCT
*
68297659 AGAAATCTTATCTCCCTGAGATTACAGTGGAG
1 AGAAATCTTATCTCCCTAAGATTACAGTGGAG
68297691 TGGATTAAAA
Statistics
Matches: 159, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
141 75 0.47
142 84 0.53
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (142 bp):
AGAAATCTTATCTCCCTAAGATTACAGTGGAGCAAATGGAAGCTAGTAATCCTACCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAAGATCTTACCTCTCTGAGGTTACAGTAGAGTAGATCACAT
CAGATTGAACCT
Found at i:68297573 original size:44 final size:44
Alignment explanation
Indices: 68297508--68297592 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
68297498 ATCGCATTAG
* *
68297508 ATTGAAGCCAGAAATCTTATCTCCCTTAGATTACAGCGGAGCAA
1 ATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAA
* * *
68297552 ATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 ATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAG
68297593 TGGATTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (44 bp):
ATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAA
Found at i:68297624 original size:44 final size:44
Alignment explanation
Indices: 68297576--68297735 Score: 149
Period size: 44 Copynumber: 3.4 Consensus size: 44
68297566 TCCTATCTCC
*
68297576 CTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTACCTCT
1 CTGAGATTACAGTAGAGTGGATTAAAATAAAGGATCTTACCTCT
* * * * * *
68297620 CTGAGGTTACAGTAGAGTAGATCACATCAGATTGAACCTAGAAATCTTATCTCC
1 CTGAGATTACAGTAGAGTGGATTA-A--A-A-T-AA---AG-GATCTTACCTCT
*
68297674 CTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTACCTCT
1 CTGAGATTACAGTAGAGTGGATTAAAATAAAGGATCTTACCTCT
*
68297718 CTGAGGTTACAGTAGAGT
1 CTGAGATTACAGTAGAGT
68297736 AGATCACATC
Statistics
Matches: 90, Mismatches: 16, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
44 45 0.50
45 3 0.03
47 1 0.01
48 3 0.03
49 2 0.02
50 3 0.03
51 1 0.01
53 3 0.03
54 29 0.32
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (44 bp):
CTGAGATTACAGTAGAGTGGATTAAAATAAAGGATCTTACCTCT
Found at i:68297721 original size:98 final size:98
Alignment explanation
Indices: 68297552--68297782 Score: 435
Period size: 98 Copynumber: 2.4 Consensus size: 98
68297542 AGCGGAGCAA
* * *
68297552 ATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTACC
1 ATTGAACCTAGAAATCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTACC
68297617 TCTCTGAGGTTACAGTAGAGTAGATCACATCAG
66 TCTCTGAGGTTACAGTAGAGTAGATCACATCAG
68297650 ATTGAACCTAGAAATCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTACC
1 ATTGAACCTAGAAATCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTACC
68297715 TCTCTGAGGTTACAGTAGAGTAGATCACATCAG
66 TCTCTGAGGTTACAGTAGAGTAGATCACATCAG
68297748 ATTGAACCTAGAAATCTTATCTCCCTGAGATTACA
1 ATTGAACCTAGAAATCTTATCTCCCTGAGATTACA
68297783 ACGGAGCAGA
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 130 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (98 bp):
ATTGAACCTAGAAATCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTTACC
TCTCTGAGGTTACAGTAGAGTAGATCACATCAG
Found at i:68297879 original size:240 final size:239
Alignment explanation
Indices: 68297408--68297889 Score: 741
Period size: 240 Copynumber: 2.0 Consensus size: 239
68297398 TACAGTGGAG
* *
68297408 CAGATGGAATCTAGTAATCCTACCTCCCTGAGATTACAGTGGAGCGGATAAAATAAAAGATCTTA
1 CAGATGGAACCTAGAAATCCTACCTCCCTGAGATTACAGTGGAGCGGATAAAATAAAAGATCTTA
* * * *
68297473 TCTCTCTGAGGTTACAGTAGAGTAGATCGCATTAGATTGAAGCCAGAAATCTTATCTCCCTTAGA
66 CCTCTCTGAGGTTACAGTAGAGTAGATCACATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGA
* * *
68297538 TTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAA
131 TTACAACGGAGCAAATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAA
* * *
68297603 TAAAGGATCTTACCTCTCTGAGGTTACAGTAGAGTAGATCACAT
196 TAAAAGATCTTACCTCTCTAAAGTTACAGTAGAGTAGATCACAT
* * * * *
68297647 CAGATTGAACCTAGAAATCTTATCTCCCTGAGATTACAGTGGAGTGGATTAAAATAAAGGATCTT
1 CAGATGGAACCTAGAAATCCTACCTCCCTGAGATTACAGTGGAGCGGA-TAAAATAAAAGATCTT
68297712 ACCTCTCTGAGGTTACAGTAGAGTAGATCACATCAGATTGAA-CCTAGAAATCTTATCTCCCTGA
65 ACCTCTCTGAGGTTACAGTAGAGTAGATCACATCAGATTGAAGCC-AGAAATCTTATCTCCCTGA
* *
68297776 GATTACAACGGAGCAGATGGAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGCGGATTAA
129 GATTACAACGGAGCAAATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAA
* * *
68297841 AATAAAAGATTTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCAT
194 AATAAAAGATCTTACCTCTCTAAAGTTACAGTAGAGTAGATCACAT
68297887 CAG
1 CAG
68297890 GTCTTATCCC
Statistics
Matches: 219, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
239 44 0.20
240 175 0.80
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (239 bp):
CAGATGGAACCTAGAAATCCTACCTCCCTGAGATTACAGTGGAGCGGATAAAATAAAAGATCTTA
CCTCTCTGAGGTTACAGTAGAGTAGATCACATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGA
TTACAACGGAGCAAATGGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAA
TAAAAGATCTTACCTCTCTAAAGTTACAGTAGAGTAGATCACAT
Found at i:68298037 original size:50 final size:50
Alignment explanation
Indices: 68297983--68298142 Score: 160
Period size: 50 Copynumber: 3.2 Consensus size: 50
68297973 GCCACAATGA
* *
68297983 CGAATCTTGCTTCCTCGACATTGCAGTTAAAAAGATTAAAGCTATAACAG
1 CGAATCTTACTTCCTCGACATTGCAGTTAAAAAGATTAAAGCTACAACAG
* ** *** * * * *
68298033 CGAATCTTACTT-CTCAAGCGGTGCAGCGGAACAGATTAAAGCCACATCGG
1 CGAATCTTACTTCCTCGA-CATTGCAGTTAAAAAGATTAAAGCTACAACAG
* * * *
68298083 TGAATCTTTCTTCCCCGACATTGCAGTTCAAAAGATTAAAGCTACAACAG
1 CGAATCTTACTTCCTCGACATTGCAGTTAAAAAGATTAAAGCTACAACAG
68298133 CGAATCTTAC
1 CGAATCTTAC
68298143 CTCCCAGGCG
Statistics
Matches: 81, Mismatches: 27, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
49 4 0.05
50 74 0.91
51 3 0.04
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (50 bp):
CGAATCTTACTTCCTCGACATTGCAGTTAAAAAGATTAAAGCTACAACAG
Found at i:68298109 original size:100 final size:100
Alignment explanation
Indices: 68297947--68298214 Score: 365
Period size: 100 Copynumber: 2.7 Consensus size: 100
68297937 TCTTATCTCC
* * * ** *
68297947 CAAGCGATGTAGTGGAACAGAATAAAGCCACAATGACGAATCTTGCTTCCTCGACATTGCAGTTA
1 CAAGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTA
*
68298012 AAAAGATTAAAGCTATAACAGCGAATCTTACTTCT
66 AAAAGATTAAAGCTACAACAGCGAATCTTACTTCT
* * * * *
68298047 CAAGCGGTGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGACATTGCAGTTC
1 CAAGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTA
* *
68298112 AAAAGATTAAAGCTACAACAGCGAATCTTACCTCC
66 AAAAGATTAAAGCTACAACAGCGAATCTTACTTCT
* * **
68298147 CAGGCGATGCAGTGGAGCAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAGATT
1 CAAGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAG-TT
68298212 AAA
65 AAA
68298215 GCCACAGCGG
Statistics
Matches: 146, Mismatches: 21, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 142 0.97
101 4 0.03
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (100 bp):
CAAGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTA
AAAAGATTAAAGCTACAACAGCGAATCTTACTTCT
Found at i:68298158 original size:50 final size:50
Alignment explanation
Indices: 68298004--68298579 Score: 149
Period size: 50 Copynumber: 11.8 Consensus size: 50
68297994 TCCTCGACAT
* * * *
68298004 TGCAGTTAAAAAGATTAAAGCTATAACAGCGAATCTTACTTCTCAAGCGG
1 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGA
*** * * * * * * * *
68298054 TGCAGCGGAACAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGAC-A
1 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGA
* *
68298103 TTGCAGTTCAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCGA
1 -TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGA
** ** * *** * *
68298154 TGCAGTGGAGCAGATTAAAGCCACATTGGTGAATCTTGCTTCCC---CGA
1 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGA
** * * * * * **
68298201 --CA-TT--GCAGATTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGA
1 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGA
* ** * * * * * * *
68298246 TGCTGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGAC-A
1 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGA
* * * * * * *
68298295 TTGCAGTTAAAAAGACTAAAGCCACAGC-GACGAGTATTACTTCCCTGGCAA
1 -TGCAGTTAAAAAGATTAAAGCTACAACAG-CGAATCTTACTTCCCAGGCGA
* * * * * * *
68298346 TGCAGTGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCC-GAC-A
1 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTAC-TTCCCAGGCGA
* * * * *
68298395 TTGCAGTTAAAAGGATTAAAG-TCACAA-TGACGAATCTCACTCTCTCA-GCCA
1 -TGCAGTTAAAAAGATTAAAGCT-ACAACAG-CGAATCTTACT-TCCCAGGCGA
* * * * * *
68298446 -GC-G-----CAGATTAAAGCCATAACAGTGAATCTTGCTTCTCC-GAC-A
1 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTC-CCAGGCGA
* * * *
68298488 TTGCAGTTAAAAAGATTAAAGCTACCACAGCGAATCTTACTTCTCAAGCGG
1 -TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGA
** * * * **
68298539 TGCAGTGGAACAGATTGAAGCCACAATGGCGAATCTTACTT
1 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTT
68298580 TCCAAAAGTT
Statistics
Matches: 379, Mismatches: 112, Indels: 70
0.68 0.20 0.12
Matches are distributed among these distances:
42 33 0.09
43 21 0.06
44 4 0.01
45 6 0.02
47 4 0.01
48 2 0.01
49 8 0.02
50 292 0.77
51 9 0.02
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (50 bp):
TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATCTTACTTCCCAGGCGA
Found at i:68298227 original size:42 final size:42
Alignment explanation
Indices: 68298163--68298305 Score: 137
Period size: 42 Copynumber: 3.2 Consensus size: 42
68298153 ATGCAGTGGA
**
68298163 GCAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATT
1 GCAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATT
* * * *
68298205 GCAGATTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGC-TGT
1 GCAGATTAAAGCCACAACGGTGAATCTTGCTTCC---CCGA--CAT-T
68298252 GGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATT
1 -G--CAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATT
68298297 GCAG-TTAAA
1 GCAGATTAAA
68298306 AAGACTAAAG
Statistics
Matches: 82, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
41 5 0.06
42 33 0.40
44 1 0.01
45 5 0.06
46 2 0.02
47 5 0.06
48 1 0.01
50 30 0.37
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (42 bp):
GCAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATT
Found at i:68298277 original size:92 final size:92
Alignment explanation
Indices: 68298144--68298405 Score: 310
Period size: 100 Copynumber: 2.8 Consensus size: 92
68298134 GAATCTTACC
* * **
68298144 TCCCAGGCGATGCAGTGGAGCAGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACATTGCAG
1 TCCCTGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAG
** *
68298209 ATTAAAGCCACAGCGGTGAATCCTACT
66 ATTAAAGCCACAGCGACGAATACTACT
* *
68298236 TCCTTGGCGATGCTGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAG
1 TCCCTGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGC--
* * *
68298301 TTAAAAAGACTAAAGCCACAGCGACGAGTATTACT
64 ------AGATTAAAGCCACAGCGACGAATACTACT
* * *
68298336 TCCCTGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATTGCAG
1 TCCCTGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAG
68298401 -TTAAA
66 ATTAAA
68298406 AGGATTAAAG
Statistics
Matches: 144, Mismatches: 18, Indels: 17
0.80 0.10 0.09
Matches are distributed among these distances:
91 4 0.03
92 59 0.41
100 81 0.56
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (92 bp):
TCCCTGGCGATGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAG
ATTAAAGCCACAGCGACGAATACTACT
Found at i:68298351 original size:192 final size:191
Alignment explanation
Indices: 68298060--68298405 Score: 523
Period size: 192 Copynumber: 1.8 Consensus size: 191
68298050 GCGGTGCAGC
* * * *
68298060 GGAACAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGACATTGCAGTTCAAAAGATTAAAGC
1 GGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGACTAAAGC
* * * * * **
68298125 TACAACAGCGAATCTTACCTCCCAGGCGATGCAGTGGAGCAGATTAAAGCCACATTGGTGAATCT
66 CACAACAGCGAATATTACCTCCCAGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAATCT
68298190 TGCTTCCCCGACATTGCAGATTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGCTGT
131 TGCTTCCCCGACATTGCAG-TTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGCTGT
68298252 GGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGACTAAAGC
1 GGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGACTAAAGC
* * * *
68298317 CACAGC-GACGAGTATTACTTCCCTGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAATC
66 CACAACAG-CGAATATTACCTCCCAGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAATC
*
68298381 TTGCTTTCCCGACATTGCAGTTAAA
130 TTGCTTCCCCGACATTGCAGTTAAA
68298406 AGGATTAAAG
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
191 6 0.04
192 131 0.96
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (191 bp):
GGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGACTAAAGC
CACAACAGCGAATATTACCTCCCAGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAATCT
TGCTTCCCCGACATTGCAGTTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGCTGT
Found at i:68298384 original size:100 final size:98
Alignment explanation
Indices: 68298207--68298575 Score: 338
Period size: 100 Copynumber: 3.8 Consensus size: 98
68298197 CCGACATTGC
* ** ** * *
68298207 AGATTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGCTGTGGAACAGATTAAAGCCACAA
1 AGATTAAAGCCACAACGACGAATATTACTTCCCTGGC-ATGCAGT-GAACAGATTAAAGCCACAA
68298272 CGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
64 CGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * *
68298307 AGACTAAAGCCACAGCGACGAGTATTACTTCCCTGGCAATGCAGTGAAACAGATTAAAGCCACAA
1 AGATTAAAGCCACAACGACGAATATTACTTCCCTGGC-ATGCAGTG-AACAGATTAAAGCCACAA
*
68298372 CGGTGAATCTTGCTTTCCCGACATTGCAGTTAAAA
64 CGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * * * * *
68298407 GGATTAAAGTCACAATGACGAATCTCAC-TCTCT--CA-GCCAGCG--CAGATTAAAGCCATAAC
1 AGATTAAAGCCACAACGACGAATATTACTTCCCTGGCATG-CAGTGAACAGATTAAAGCCACAAC
* *
68298466 AGTGAATCTTGCTTCTCCGACATTGCAGTTAAAA
65 GGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * * * ** * *
68298500 AGATTAAAGCTACCAC-AGCGAATCTTACTTCTCAAGCGGTGCAGTGGAACAGATTGAAGCCACA
1 AGATTAAAGCCACAACGA-CGAATATTACTTCCCTGGC-ATGCAGT-GAACAGATTAAAGCCACA
* *
68298564 ATGGCGAATCTT
63 ACGGTGAATCTT
68298576 ACTTTCCAAA
Statistics
Matches: 220, Mismatches: 38, Indels: 22
0.79 0.14 0.08
Matches are distributed among these distances:
92 1 0.00
93 67 0.30
94 4 0.02
95 1 0.00
96 6 0.03
97 4 0.02
98 2 0.01
99 5 0.02
100 130 0.59
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (98 bp):
AGATTAAAGCCACAACGACGAATATTACTTCCCTGGCATGCAGTGAACAGATTAAAGCCACAACG
GTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
Found at i:68300280 original size:21 final size:21
Alignment explanation
Indices: 68300239--68300280 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
68300229 TTTTCTCAAA
* *
68300239 TCGAGTCGAGTGAGATGGAAT
1 TCGAGTCGAATGAGATCGAAT
68300260 TCGAGTCGAATCGA-ATCGAAT
1 TCGAGTCGAAT-GAGATCGAAT
68300281 ATATTTGTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (21 bp):
TCGAGTCGAATGAGATCGAAT
Found at i:68303289 original size:9 final size:8
Alignment explanation
Indices: 68303274--68303298 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
68303264 CCAATTTTTT
68303274 TAAAAAAA
1 TAAAAAAA
68303282 TAAAAAAA
1 TAAAAAAA
68303290 TAAAAAAA
1 TAAAAAAA
68303298 T
1 T
68303299 TATTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:68303306 original size:30 final size:31
Alignment explanation
Indices: 68303266--68303328 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
68303256 AATAAACACC
*
68303266 AATTTTTTTAAAAA-AATAAAAAAATAAAAA
1 AATTATTTTAAAAATAATAAAAAAATAAAAA
* **
68303296 AATTATTTTAAAAATATTTTAAAAATAAAAA
1 AATTATTTTAAAAATAATAAAAAAATAAAAA
68303327 AA
1 AA
68303329 ATAAAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 13 0.46
31 15 0.54
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (31 bp):
AATTATTTTAAAAATAATAAAAAAATAAAAA
Found at i:68303310 original size:12 final size:12
Alignment explanation
Indices: 68303293--68303321 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
68303283 AAAAAAATAA
68303293 AAAAATTATTTT
1 AAAAATTATTTT
68303305 AAAAA-TATTTT
1 AAAAATTATTTT
68303316 AAAAAT
1 AAAAAT
68303322 AAAAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AAAAATTATTTT
Found at i:68309951 original size:58 final size:59
Alignment explanation
Indices: 68309875--68309993 Score: 154
Period size: 58 Copynumber: 2.0 Consensus size: 59
68309865 TTGAAATTAG
* * * *
68309875 TTAAACTCCATAAAACCTTCGAGTTTACAGC-GAAATATCA-AAACTGCTTAATATACAC
1 TTAAACTACATAAAACCTTCGAGTTAACAGCAGAAA-ATCAGAAACTGCTTAAAACACAC
*
68309933 TTAAACTACA-AAGAACCTTCGAGTTAACAGCAGAAAATCAGATACTGCTTAAAACACAC
1 TTAAACTACATAA-AACCTTCGAGTTAACAGCAGAAAATCAGAAACTGCTTAAAACACAC
68309992 TT
1 TT
68309994 GATTCTGTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
57 2 0.04
58 30 0.57
59 21 0.40
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.25
Consensus pattern (59 bp):
TTAAACTACATAAAACCTTCGAGTTAACAGCAGAAAATCAGAAACTGCTTAAAACACAC
Found at i:68313267 original size:13 final size:13
Alignment explanation
Indices: 68313249--68313298 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
68313239 CTTAAACTAA
68313249 ACTTTTCAAAAGT
1 ACTTTTCAAAAGT
* *
68313262 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGT
*
68313275 ACTTTTTAAAAGT
1 ACTTTTCAAAAGT
68313288 ACTTTTCAAAA
1 ACTTTTCAAAA
68313299 AGCAATGCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
12 3 0.10
13 22 0.76
14 4 0.14
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (13 bp):
ACTTTTCAAAAGT
Found at i:68322206 original size:18 final size:18
Alignment explanation
Indices: 68322180--68322225 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
68322170 TAATGCTTAA
*
68322180 AAAAACACTTCTGGCTCC
1 AAAAGCACTTCTGGCTCC
68322198 AAAAGCACTTCTGGCTCC
1 AAAAGCACTTCTGGCTCC
68322216 AAAAGCACTT
1 AAAAGCACTT
68322226 TTGGAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.22
Consensus pattern (18 bp):
AAAAGCACTTCTGGCTCC
Found at i:68325742 original size:51 final size:51
Alignment explanation
Indices: 68325677--68325794 Score: 173
Period size: 51 Copynumber: 2.3 Consensus size: 51
68325667 TATTAGCAAG
* *
68325677 GAGTTCGCCAGTGTTTTGGTGGAGTTGATGATTATCAGAAGGATCGGTAAA
1 GAGTTCGCTAGTGTTTTGGTGGAGTTGATGACTATCAGAAGGATCGGTAAA
* * * * *
68325728 GAGTTTGCTGGTGTTTTGGTGGAGTTGATGACTGTTAGAAGGATCGGTAAG
1 GAGTTCGCTAGTGTTTTGGTGGAGTTGATGACTATCAGAAGGATCGGTAAA
68325779 GAGTTCGCTAGTGTTT
1 GAGTTCGCTAGTGTTT
68325795 GGGCGAACTA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.21, C:0.08, G:0.36, T:0.35
Consensus pattern (51 bp):
GAGTTCGCTAGTGTTTTGGTGGAGTTGATGACTATCAGAAGGATCGGTAAA
Found at i:68325938 original size:27 final size:27
Alignment explanation
Indices: 68325875--68325938 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 27
68325865 TGGTTTGGTG
* *
68325875 AGTTGGGGTTCGCCAGTGTGTTTAGCA
1 AGTTGGGGTTCGCCAGTCTATTTAGCA
* ** * *
68325902 AGCTAAGGTTCTCCAGTCTATTTAGCT
1 AGTTGGGGTTCGCCAGTCTATTTAGCA
68325929 AGTTGGGGTT
1 AGTTGGGGTT
68325939 TGCTAGTTGT
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.17, C:0.16, G:0.31, T:0.36
Consensus pattern (27 bp):
AGTTGGGGTTCGCCAGTCTATTTAGCA
Found at i:68327854 original size:27 final size:27
Alignment explanation
Indices: 68327804--68327857 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
68327794 ACATAAGGTC
*
68327804 ATAACAGTCATTTCATCTCTTAGGGGT
1 ATAACAGTCATTTCATCCCTTAGGGGT
*
68327831 ATAACAGTCATTTTA-CCCTATAGGGGT
1 ATAACAGTCATTTCATCCCT-TAGGGGT
68327858 TGTCAAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
ATAACAGTCATTTCATCCCTTAGGGGT
Found at i:68329255 original size:18 final size:18
Alignment explanation
Indices: 68329229--68329274 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
68329219 GTATAACAAT
*
68329229 ATAAAAATGACAAGGATA
1 ATAATAATGACAAGGATA
* *
68329247 ATAATAATGGCAATGATA
1 ATAATAATGACAAGGATA
68329265 ATAATAATGA
1 ATAATAATGA
68329275 TAATAATAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.15, T:0.24
Consensus pattern (18 bp):
ATAATAATGACAAGGATA
Found at i:68329273 original size:12 final size:12
Alignment explanation
Indices: 68329258--68329283 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68329248 TAATAATGGC
68329258 AATGATAATAAT
1 AATGATAATAAT
68329270 AATGATAATAAT
1 AATGATAATAAT
68329282 AA
1 AA
68329284 CCAAAAGGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATGATAATAAT
Found at i:68329982 original size:21 final size:22
Alignment explanation
Indices: 68329956--68330000 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
68329946 ATAGAAAATC
*
68329956 AAAAAACTGG-AGAAAGAAAGAA
1 AAAAAAC-GGAAGAAAAAAAGAA
68329978 AAAAAACGGAAGAAAAAAAGAA
1 AAAAAACGGAAGAAAAAAAGAA
68330000 A
1 A
68330001 GATTGAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.73, C:0.04, G:0.20, T:0.02
Consensus pattern (22 bp):
AAAAAACGGAAGAAAAAAAGAA
Found at i:68330512 original size:27 final size:27
Alignment explanation
Indices: 68330466--68330671 Score: 288
Period size: 27 Copynumber: 7.7 Consensus size: 27
68330456 TTTTTTGGTT
* * *
68330466 ATTTTACCCTAT-GGGCTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGATC
**
68330492 ATTTTACTATATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
68330519 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
** * * *
68330546 ATTTTACCCTATAAGGGTATTACGGTT
1 ATTTTACCCTATGGGGGTATTTCGATC
*
68330573 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGATC
*
68330600 ATTTTACCCTATGGGGGTATTTCGACC
1 ATTTTACCCTATGGGGGTATTTCGATC
*
68330627 ATTTTACTCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
68330654 ATTTTACCCTATGGGGGT
1 ATTTTACCCTATGGGGGT
68330672 CTCGGTGCAG
Statistics
Matches: 158, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
26 10 0.06
27 148 0.94
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCGATC
Found at i:68332462 original size:47 final size:47
Alignment explanation
Indices: 68332399--68332492 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
68332389 TTTCTGAGAG
68332399 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
1 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
68332446 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
1 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
68332493 ACACATAAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.19
Consensus pattern (47 bp):
CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
Found at i:68334415 original size:13 final size:13
Alignment explanation
Indices: 68334397--68334441 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
68334387 TCTGATACTC
68334397 TGTTTTCAAGATA
1 TGTTTTCAAGATA
68334410 TGTTTTCAAGATA
1 TGTTTTCAAGATA
* *
68334423 TGTTTTTAAGCTA
1 TGTTTTCAAGATA
68334436 TGTTTT
1 TGTTTT
68334442 ATGCATACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.53
Consensus pattern (13 bp):
TGTTTTCAAGATA
Found at i:68334927 original size:21 final size:21
Alignment explanation
Indices: 68334901--68334944 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
68334891 AGACTAAGCC
68334901 AAGTTTTTAAGTATGATTTTA
1 AAGTTTTTAAGTATGATTTTA
68334922 AAGTTTTTAAGTATGATTTTA
1 AAGTTTTTAAGTATGATTTTA
68334943 AA
1 AA
68334945 CAAGTACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (21 bp):
AAGTTTTTAAGTATGATTTTA
Found at i:68354466 original size:5 final size:5
Alignment explanation
Indices: 68354458--68354482 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
68354448 AGATTACATT
68354458 AAATC AAATC AAATC AAATC AAATC
1 AAATC AAATC AAATC AAATC AAATC
68354483 TTTACAAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATC
Found at i:68358495 original size:15 final size:15
Alignment explanation
Indices: 68358475--68358505 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
68358465 GTTATGTAAG
68358475 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
68358490 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
68358505 T
1 T
68358506 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:68366075 original size:47 final size:47
Alignment explanation
Indices: 68364885--68366037 Score: 2099
Period size: 47 Copynumber: 24.3 Consensus size: 47
68364875 CAGCCAAGAG
*
68364885 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
68364932 AGTGTATGTATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAA
1 AGTGTA--TATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
68364981 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
68365032 AGTGTATGTATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAA
1 AGTGTA--TATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
68365081 AGTGTATGTATATATGTAATAAGGTCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365132 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365179 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365226 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365273 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365320 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365367 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365414 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365461 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365508 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365555 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365602 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365649 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365696 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365743 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365790 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365837 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68365884 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
68365931 AGTGTATATATGTAATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
**
68365978 AGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
68366025 AGTGTATATATGT
1 AGTGTATATATGT
68366038 GACAGGGCCG
Statistics
Matches: 1081, Mismatches: 13, Indels: 24
0.97 0.01 0.02
Matches are distributed among these distances:
47 908 0.84
49 84 0.08
51 81 0.07
53 8 0.01
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:68366265 original size:37 final size:37
Alignment explanation
Indices: 68366209--68366287 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
68366199 CCGAGCTCTA
* * *
68366209 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
68366246 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
68366283 AAGAC
1 AAGAC
68366288 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:68373606 original size:23 final size:22
Alignment explanation
Indices: 68373574--68373616 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
68373564 NNNNNNNNNN
*
68373574 TAAGATTACAAAATCATATCTTC
1 TAAGAGTAC-AAATCATATCTTC
*
68373597 TAAGAGTACATATCATATCT
1 TAAGAGTACAAATCATATCT
68373617 AAGATTGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (22 bp):
TAAGAGTACAAATCATATCTTC
Found at i:68373619 original size:19 final size:20
Alignment explanation
Indices: 68373595--68373642 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
68373585 AATCATATCT
*
68373595 TCTAAGA-GTACATATCATA
1 TCTAAGATGCACATATCATA
*
68373614 TCTAAGATTGCATATATCATA
1 TCTAAGA-TGCACATATCATA
68373635 TCTAAGAT
1 TCTAAGAT
68373643 CATATCTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 1 0.04
21 17 0.68
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
TCTAAGATGCACATATCATA
Found at i:68373662 original size:14 final size:12
Alignment explanation
Indices: 68373629--68373654 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68373619 GATTGCATAT
68373629 ATCATATCTAAG
1 ATCATATCTAAG
68373641 ATCATATCTAAG
1 ATCATATCTAAG
68373653 AT
1 AT
68373655 TGCATATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCATATCTAAG
Found at i:68374502 original size:44 final size:44
Alignment explanation
Indices: 68374439--68374646 Score: 251
Period size: 44 Copynumber: 4.7 Consensus size: 44
68374429 ATCTGCTATT
*
68374439 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
* * *
68374483 TTCAACCTATTCCACTGCTGACAAGGGAGATAGGA-CCTACAATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATC
* ** * *
68374527 TTCAATCTATTCCACTGCTTCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
68374571 TTTAACCTATTCCACTGCTGACCAGGGAGATAAGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
68374615 TAT-AACCTATTCCACTGCTGACCCGAGAGATA
1 T-TCAACCTATTCCACTGCTGACCAGGGAGATA
68374647 AGGCTGGGGT
Statistics
Matches: 139, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.01
44 135 0.97
45 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:68374768 original size:88 final size:88
Alignment explanation
Indices: 68374646--68375053 Score: 728
Period size: 88 Copynumber: 4.6 Consensus size: 88
68374636 CCCGAGAGAT
* * * *
68374646 AAGGCTGGGGT-TATTGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCC
1 AAGGCTGGTGTCT-TTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACC
*
68374710 TGCTCCGCTGCAACCCAGGGAGGC
65 TGCTCTGCTGCAACCCAGGGAGGC
68374734 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
68374799 GCTCTGCTGCAACCCAGGGAGGC
66 GCTCTGCTGCAACCCAGGGAGGC
68374822 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
68374887 GCTCTGCTGCAACCCAGGGAGGC
66 GCTCTGCTGCAACCCAGGGAGGC
68374910 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
68374975 GCTCTGCTGCAACCCAGGGAGGC
66 GCTCTGCTGCAACCCAGGGAGGC
***
68374998 AAGGCTGGTGTCTTTGATCTGCTTCGCTATTGGTGCAGGAAGGCAAGATCTGCTAT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTAT
68375054 CTTCGATCTA
Statistics
Matches: 311, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
88 310 1.00
89 1 0.00
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.28
Consensus pattern (88 bp):
AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCT
GCTCTGCTGCAACCCAGGGAGGC
Found at i:68374778 original size:44 final size:43
Alignment explanation
Indices: 68374646--68375044 Score: 205
Period size: 44 Copynumber: 9.1 Consensus size: 43
68374636 CCCGAGAGAT
* *
68374646 AAGGCTGGGGT-TATTGATCTGCTTCGCTGTCGGTGCAAGAAGGC
1 AAGGCTGGTGTCT-TTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
* * * * * * **** *
68374690 AAGATCTGCTAT-TTTTAGCCTGCTCCGCTGCAACCCAGGGAGGC
1 AAG-GCTGGTGTCTTTGA-TCTGCTTCGCTGCGGTGCAGGAAGGC
68374734 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
* * * * * * **** *
68374778 AAGATCTGCTATTTTTAACCTGC-TCTGCTGCAACCCAGGGAGGC
1 AAG-GCTGGTGTCTTTGATCTGCTTC-GCTGCGGTGCAGGAAGGC
68374822 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
* * * * * * **** *
68374866 AAGATCTGCTATTTTTAACCTGC-TCTGCTGCAACCCAGGGAGGC
1 AAG-GCTGGTGTCTTTGATCTGCTTC-GCTGCGGTGCAGGAAGGC
68374910 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
* * * * * * **** *
68374954 AAGATCTGCTATTTTTAACCTGC-TCTGCTGCAACCCAGGGAGGC
1 AAG-GCTGGTGTCTTTGATCTGCTTC-GCTGCGGTGCAGGAAGGC
**
68374998 AAGGCTGGTGTCTTTGATCTGCTTCGCTATTGGTGCAGGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCT-GCGGTGCAGGAAGGC
68375042 AAG
1 AAG
68375045 ATCTGCTATC
Statistics
Matches: 247, Mismatches: 92, Indels: 32
0.67 0.25 0.09
Matches are distributed among these distances:
43 65 0.26
44 116 0.47
45 66 0.27
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (43 bp):
AAGGCTGGTGTCTTTGATCTGCTTCGCTGCGGTGCAGGAAGGC
Found at i:68375091 original size:44 final size:43
Alignment explanation
Indices: 68375036--68375321 Score: 231
Period size: 44 Copynumber: 6.5 Consensus size: 43
68375026 ATTGGTGCAG
* *
68375036 GAAGGCAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-CGCCAATATAT
* *
68375080 GAAGACAAGATCTGCTTTCTTCGATCTACTT-CGCCACTAGTAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCCGCCAATA-TAT
* * *
68375123 GGGAAGACAAGATCCGC-ATCTTCGATCCACTTCCTACCAATATA-
1 --GAAGACAAGATCTGCTATCTTCGATCTACTTCC-GCCAATATAT
* * * *
68375167 GAAAGACATGACCTGCTATCTTCGACCTACTTCACGCCAATACAT
1 G-AAGACAAGATCTGCTATCTTCGATCTACTTC-CGCCAATATAT
* * * * **
68375212 GAAGAAAAGATCTGTTTTCTTTGATCTACTT-CGCCACAGTATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCCGCCA-A-TATAT
* * *
68375256 GAAGAAAAGATCTGC-ATCTTCGATCTACTTCACTACCAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTC-C-GCCAATATAT
* * *
68375300 GAAGATAGGATCTGTTATCTTC
1 GAAGACAAGATCTGCTATCTTC
68375322 ACTGATCTGC
Statistics
Matches: 193, Mismatches: 34, Indels: 29
0.75 0.13 0.11
Matches are distributed among these distances:
42 13 0.07
43 27 0.14
44 118 0.61
45 27 0.14
46 8 0.04
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCCGCCAATATAT
Found at i:68375319 original size:132 final size:132
Alignment explanation
Indices: 68375044--68375321 Score: 432
Period size: 132 Copynumber: 2.1 Consensus size: 132
68375034 AGGAAGGCAA
* *
68375044 GATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTAC
1 GATCTGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTAC
*
68375109 TTCGCCACTAGTATGGGAAGACAAGATCCGCATCTTCGATCCACTTCCTACCAATATAGAAAGAC
66 TTCGCCACTAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTCCTACCAATATAGAAAGAC
*
68375174 AT
131 AG
* * *
68375176 GACCTGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGTTTTCTTTGATCTAC
1 GATCTGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTAC
* * *
68375241 TTCGCCAC-AGTATGGGAAGAAAAGATCTGCATCTTCGATCTACTTCACTACCAATATAGGAAGA
66 TTCGCCACTAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTC-CTACCAATATAGAAAGA
*
68375305 TAG
130 CAG
*
68375308 GATCTGTTATCTTC
1 GATCTGCTATCTTC
68375322 ACTGATCTGC
Statistics
Matches: 132, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 35 0.27
132 97 0.73
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (132 bp):
GATCTGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTAC
TTCGCCACTAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTCCTACCAATATAGAAAGAC
AG
Found at i:68380167 original size:17 final size:17
Alignment explanation
Indices: 68380145--68380188 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
68380135 TAGGAAATAA
68380145 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
68380162 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
68380179 -ATATGTATAT
1 AAAATGTATAT
68380189 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:68380221 original size:60 final size:58
Alignment explanation
Indices: 68380114--68380228 Score: 133
Period size: 60 Copynumber: 1.9 Consensus size: 58
68380104 TATAAAAGTA
* * *
68380114 TATATATATGCATATAAAAGTTAGGAAATAAAAAATGTATATGTATATAAAATGTAAATG
1 TATATATATGCATATAAAAGTTAGCAAATAAAAAA--TAAATATATATAAAATGTAAATG
* *
68380174 TATATATATGTATATAAAAGTTATGCAAATAGAATAAA-AAATATATATAATATGT
1 TATATATATGCATATAAAAGTTA-GCAAATA-AA-AAATAAATATATATAAAATGT
68380229 GCATGTGTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
60 36 0.77
61 6 0.13
62 2 0.04
63 3 0.06
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (58 bp):
TATATATATGCATATAAAAGTTAGCAAATAAAAAATAAATATATATAAAATGTAAATG
Found at i:68380316 original size:3 final size:3
Alignment explanation
Indices: 68380308--68380361 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
68380298 GTATATATAG
*
68380308 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
68380356 TAA TAA
1 TAA TAA
68380362 CTTAATAACA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Done.