Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 222 of 313
Found at i:68380703 original size:23 final size:22
Alignment explanation
Indices: 68380660--68380717 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
68380650 AAAGGGTATC
* *
68380660 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
68380681 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
68380704 TGCATATCATATCT
1 TACAAATCATATCT
68380718 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:68380720 original size:19 final size:20
Alignment explanation
Indices: 68380673--68380743 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 20
68380663 AAATTAAATC
* *
68380673 TCTAAGATTACAAAATCATA
1 TCTAAGATTGCAATATCATA
68380693 TCTTCTAAGATTGC-ATATCATA
1 ---TCTAAGATTGCAATATCATA
68380715 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
*
68380736 TATAAGAT
1 TCTAAGAT
68380744 CATATCTAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
19 11 0.26
21 15 0.35
22 7 0.16
23 10 0.23
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:68407531 original size:15 final size:15
Alignment explanation
Indices: 68407511--68407565 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
68407501 ACTCTCCTCA
*
68407511 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
68407526 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
68407541 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
68407555 TTCTTTT-TCTC
1 TTCTTTTCTCTC
68407566 GATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:68412384 original size:22 final size:22
Alignment explanation
Indices: 68412359--68412400 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
68412349 GTTTTTGAAG
68412359 TTTTAATTTTATTTTTCAATAC
1 TTTTAATTTTATTTTTCAATAC
*
68412381 TTTTATTTTTATTTTTCAAT
1 TTTTAATTTTATTTTTCAAT
68412401 GATTACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTAATTTTATTTTTCAATAC
Found at i:68415311 original size:107 final size:107
Alignment explanation
Indices: 68415125--68415445 Score: 642
Period size: 107 Copynumber: 3.0 Consensus size: 107
68415115 TCTGTCCAAG
68415125 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
1 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
68415190 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
66 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
68415232 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
1 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
68415297 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
66 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
68415339 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
1 AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
68415404 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
66 TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
68415446 TCAACCTCAA
Statistics
Matches: 214, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 214 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (107 bp):
AATTTATCTTCGTTCTAGGGTTCAAATCTTGGGTTCAACTCTTCTAACTCTTTCGTTCATCTTAT
TCAAAATAAAAGTATTGATTACTTTCCCATAATTACAACAAA
Found at i:68417288 original size:20 final size:20
Alignment explanation
Indices: 68417263--68417310 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
68417253 GCTAGGGTAG
68417263 GAAAAATATACTTAAAGGTT
1 GAAAAATATACTTAAAGGTT
68417283 GAAAAATATACTTAAAGGTT
1 GAAAAATATACTTAAAGGTT
68417303 GAAAAATA
1 GAAAAATA
68417311 AAATAAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.54, C:0.04, G:0.15, T:0.27
Consensus pattern (20 bp):
GAAAAATATACTTAAAGGTT
Found at i:68417317 original size:19 final size:20
Alignment explanation
Indices: 68417263--68417317 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
68417253 GCTAGGGTAG
**
68417263 GAAAAATATACTTAAAGGTT
1 GAAAAATATAAATAAAGGTT
**
68417283 GAAAAATATACTTAAAGGTT
1 GAAAAATATAAATAAAGGTT
68417303 GAAAAATA-AAATAAA
1 GAAAAATATAAATAAA
68417318 AAGTTGTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 5 0.15
20 28 0.85
ACGTcount: A:0.58, C:0.04, G:0.13, T:0.25
Consensus pattern (20 bp):
GAAAAATATAAATAAAGGTT
Found at i:68417323 original size:20 final size:20
Alignment explanation
Indices: 68417280--68417323 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
68417270 ATACTTAAAG
* * * *
68417280 GTTGAAAAATATACTTAAAG
1 GTTGAAAAATAAAATAAAAA
68417300 GTTGAAAAATAAAATAAAAA
1 GTTGAAAAATAAAATAAAAA
68417320 GTTG
1 GTTG
68417324 TATTTATACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.02, G:0.16, T:0.27
Consensus pattern (20 bp):
GTTGAAAAATAAAATAAAAA
Found at i:68422762 original size:79 final size:81
Alignment explanation
Indices: 68422659--68422843 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
68422649 GCTACTCGTT
* * * *
68422659 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTTGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
68422722 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
68422739 CAAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTTGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
68422803 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
68422819 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTTGGGACTTAGCCCGGA
68422844 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTTGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:68422843 original size:40 final size:40
Alignment explanation
Indices: 68422640--68422843 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
68422630 CGGAATTTAA
** * *
68422640 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTTGGGACTTAGC
* * * *
68422680 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
*
68422720 CCGGATTTAGTAACTCGCACAAATGCCTTTGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
* * *
68422759 CCGGA-ATTAGTATCTCGCACAAATGCC-TTCGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTTGGGA-CTTAGC
* * *
68422799 CCGGATATGGTCACTTAGCACAAA-GCCTTTGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTTGGGACTTAGC
68422839 CCGGA
1 CCGGA
68422844 CATCATTCAA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 4 0.03
39 30 0.22
40 88 0.65
41 14 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGC
Found at i:68429024 original size:23 final size:23
Alignment explanation
Indices: 68428998--68429070 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
68428988 AGTGCCACAT
* *
68428998 TGATCTGTAGCCGAAGTTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
68429021 TGATATGTAGCCGTAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
*
68429044 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
68429067 TGAT
1 TGAT
68429071 CAATAACACT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:68429170 original size:8 final size:8
Alignment explanation
Indices: 68429157--68429185 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
68429147 ACCCGGGACT
68429157 CACTGTAA
1 CACTGTAA
68429165 CACTGTAA
1 CACTGTAA
68429173 CACTGTAA
1 CACTGTAA
68429181 CACTG
1 CACTG
68429186 GTCTCTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.24
Consensus pattern (8 bp):
CACTGTAA
Found at i:68429330 original size:18 final size:17
Alignment explanation
Indices: 68429304--68429342 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
68429294 ATTTTCCTTC
68429304 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
68429321 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
68429339 CACA
1 CACA
68429343 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:68440883 original size:81 final size:81
Alignment explanation
Indices: 68440771--68441037 Score: 356
Period size: 81 Copynumber: 3.3 Consensus size: 81
68440761 TAAAATAAAA
* * * *
68440771 AAATACCC-CTATAGGGTAAAATGACCAAAATACCCCCATAAGGTAAAATGATCGAAATACCCCA
1 AAATACCCTC-ATAGGGTAAAATGACCGAAATACCCCCATAAGGTAGAATGACCGAAATACCCCC
* *
68440835 ATAAGGTAAAATGACTG
65 ATAGGGTAAAATGATTG
* * * * * *
68440852 AAATACACTCATAGGGTAACATGACTGAAATACCCCCATAGGGTAGAATGAGCGGAATACCCCCA
1 AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAGAATGACCGAAATACCCCCA
* *
68440917 TAGGGTAGACTGATTG
66 TAGGGTAAAATGATTG
* * *
68440933 AAATACCCTCATAGGGTAGAATGACCGAAATACCCCCATACGGTAGACTGACCGAAATACCCCCA
1 AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAGAATGACCGAAATACCCCCA
68440998 TAGGGTAAAATGATTG
66 TAGGGTAAAATGATTG
*
68441014 AAATACCCCCATAGGGTAAAATGA
1 AAATACCCTCATAGGGTAAAATGA
68441038 TTGTTATACC
Statistics
Matches: 160, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 159 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (81 bp):
AAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAGAATGACCGAAATACCCCCA
TAGGGTAAAATGATTG
Found at i:68441047 original size:27 final size:27
Alignment explanation
Indices: 68440771--68441037 Score: 309
Period size: 27 Copynumber: 9.9 Consensus size: 27
68440761 TAAAATAAAA
* *
68440771 AAATACCCCTATAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
* *
68440798 AAATACCCCCATAAGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
68440825 AAATACCCCAATAAGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * *
68440852 AAATACACTCATAGGGTAACATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
68440879 AAATACCCCCATAGGGTAGAATGAGCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * **
68440906 GAATACCCCCATAGGGTAGACTGATTG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
68440933 AAATACCCTCATAGGGTAGAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
68440960 AAATACCCCCATACGGTAGACTGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
**
68440987 AAATACCCCCATAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGACCG
68441014 AAATACCCCCATAGGGTAAAATGA
1 AAATACCCCCATAGGGTAAAATGA
68441038 TTGTTATACC
Statistics
Matches: 205, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 205 1.00
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:68447306 original size:146 final size:146
Alignment explanation
Indices: 68447042--68447333 Score: 489
Period size: 146 Copynumber: 2.0 Consensus size: 146
68447032 CCACATGAGC
68447042 GTGTGGGCCCACTTGGGACGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
1 GTGTGGGCCCACTTGGGACGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
* *
68447107 TATCTGAGTCACTAGAGCTGACTACGGACCTTTCGAGAGGTCCATATCTACACCTAGACCCCAAA
66 TACCTGAGTCACTAGAGCTGACTACGGACCTTTCAAGAGGTCCATATCTACACCTAGACCCCAAA
68447172 ATAGGTAAAATGACAA
131 ATAGGTAAAATGACAA
*
68447188 GTGTGGGCCCACTTGGGCCGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
1 GTGTGGGCCCACTTGGGACGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
* * * *
68447253 TACCTGAGTCGCTCGAGGC-GAC-ACCGGACCTTTCAAGAGGTCGATATTTACACCTAGACCCCA
66 TACCTGAGTCACTAGA-GCTGACTA-CGGACCTTTCAAGAGGTCCATATCTACACCTAGACCCCA
68447316 AAATAGGTAAAATGACAA
129 AAATAGGTAAAATGACAA
68447334 AAATACCCCC
Statistics
Matches: 137, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
145 1 0.01
146 134 0.98
147 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (146 bp):
GTGTGGGCCCACTTGGGACGAGTAATGGGCCTTGGGCCCATTTACACTATTATGACCATTTAGGT
TACCTGAGTCACTAGAGCTGACTACGGACCTTTCAAGAGGTCCATATCTACACCTAGACCCCAAA
ATAGGTAAAATGACAA
Found at i:68447352 original size:27 final size:27
Alignment explanation
Indices: 68447321--68447810 Score: 473
Period size: 27 Copynumber: 18.3 Consensus size: 27
68447311 CCCCAAAATA
**
68447321 GGTAAAATGACAAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
68447348 GGTAAAATGACCAAAATACCCTCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* *
68447375 GGTAAAATGACTGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCCATAG
* **
68447402 GGTAAAATGACTGAAATACGTCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
***
68447429 GGT-AAATGATTAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
68447455 GGTAGAATAACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * **
68447482 GGCAGAATGGTCGAAATA-CCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
68447508 GATAGAATAACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
68447535 GGTAGAATGACCGAAATACCCCCATTG
1 GGTAAAATGACCGAAATACCCCCATAG
* ***
68447562 GGTAGAATGACCGAAATATTACCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
68447589 GGTAAAATGATCGAAATACGCCCAAAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
68447616 GGTAAAATGATCAAAATACTCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * * *
68447643 GGTAGAATAATCGAAATA-CCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* *
68447669 GGTAGAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* * *
68447696 GGTAGAATGACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
* ** * *
68447723 GGTAAAATAACTAAAATAGCCCTATAG
1 GGTAAAATGACCGAAATACCCCCATAG
** * *
68447750 GGTAAAATGACTAAAATACACCAATAG
1 GGTAAAATGACCGAAATACCCCCATAG
*
68447777 GGTAAAATGACTGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCCATAG
68447804 GGTAAAA
1 GGTAAAA
68447811 GGACTGTTAT
Statistics
Matches: 392, Mismatches: 68, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
26 64 0.16
27 328 0.84
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCCATAG
Found at i:68447544 original size:107 final size:107
Alignment explanation
Indices: 68447321--68447810 Score: 502
Period size: 107 Copynumber: 4.6 Consensus size: 107
68447311 CCCCAAAATA
* * * * *
68447321 GGTAAAATGACAAAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCATAAGGTAAAATGA-
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAT
* * ** **
68447385 CTGAAATACCCCCATAAGGTAAAATGACTGAAATACGTCCATAG
66 C-GAAATA-CCCCATAGGGTAAAATAACCAAAATACCCCCATAG
** * * * *
68447429 GGTA-AATGATTAAAATACCCCCATAGGGTAGAATAACCGAAATACCCTCATAGGGCAGAATGGT
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAT
* * *
68447493 CGAAATACCCCATAGGATAGAATAACCGAAATACCCCCATAG
66 CGAAATACCCCATAGGGTAAAATAACCAAAATACCCCCATAG
* * **
68447535 GGTAGAATGACCGAAATACCCCCATTGGGTAGAATGACCGAAATATTAC-CATAGGGTAAAATGA
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATA-CCCTCATAGGGTAAAATGA
* * * *
68447599 TCGAAATACGCCCAAAGGGTAAAATGATCAAAATACTCCCATAG
65 TCGAAATAC-CCCATAGGGTAAAATAACCAAAATACCCCCATAG
* * * * * *
68447643 GGTAGAATAATCGAAATA-CCCTATAGGGTAGAATGACCGAAATACCCTCATAGGGTAGAATGAC
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAT
* * * *
68447707 CAAAATACCCCTATAGGGTAAAATAACTAAAATAGCCCTATAG
66 CGAAATACCCC-ATAGGGTAAAATAACCAAAATACCCCCATAG
* * * * * * *
68447750 GGTAAAATGACTAAAATACACCAATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAA
1 GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAA
68447811 GGACTGTTAT
Statistics
Matches: 315, Mismatches: 60, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
106 36 0.11
107 194 0.62
108 85 0.27
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (107 bp):
GGTAGAATGACCAAAATACCCCCATAGGGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAT
CGAAATACCCCATAGGGTAAAATAACCAAAATACCCCCATAG
Found at i:68449796 original size:25 final size:26
Alignment explanation
Indices: 68449763--68449815 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 26
68449753 AAAAGGAATG
68449763 CATTAAAAAAATCAATTTTTATGTGA
1 CATTAAAAAAATCAATTTTTATGTGA
***
68449789 CATT-AAAAAATTGTTTTTTATGTGA
1 CATTAAAAAAATCAATTTTTATGTGA
68449814 CA
1 CA
68449816 ATTTTTTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (26 bp):
CATTAAAAAAATCAATTTTTATGTGA
Found at i:68449952 original size:7 final size:6
Alignment explanation
Indices: 68449914--68449944 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
68449904 ATATTCTAAA
68449914 TATTTT TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT TATTTT T
68449945 TTAATTTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:68456925 original size:33 final size:33
Alignment explanation
Indices: 68456888--68456954 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
68456878 TACATTTGAG
*
68456888 GCCAATTTGACTAAGTGACGAACGGAACTACAA
1 GCCAATTTGACTAAGTGACGAACAGAACTACAA
*
68456921 GCCAATTTGACTAAGTGTCGAACAGAACTACAA
1 GCCAATTTGACTAAGTGACGAACAGAACTACAA
68456954 G
1 G
68456955 AGAACATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (33 bp):
GCCAATTTGACTAAGTGACGAACAGAACTACAA
Found at i:68458297 original size:14 final size:14
Alignment explanation
Indices: 68458278--68458306 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
68458268 ACCTTGTGGA
68458278 CTCTCTTGATTTGC
1 CTCTCTTGATTTGC
68458292 CTCTCTTGATTTGC
1 CTCTCTTGATTTGC
68458306 C
1 C
68458307 ATGTAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.31, G:0.14, T:0.48
Consensus pattern (14 bp):
CTCTCTTGATTTGC
Found at i:68464832 original size:28 final size:28
Alignment explanation
Indices: 68464770--68464833 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
68464760 AAAATTCAAT
68464770 GGCCATATTGCAACGATCAGATTCCAAC
1 GGCCATATTGCAACGATCAGATTCCAAC
* * * *
68464798 AGTCATATTGTAACGATCAGATTCTAAC
1 GGCCATATTGCAACGATCAGATTCCAAC
68464826 GGCCATAT
1 GGCCATAT
68464834 CATTGGGAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (28 bp):
GGCCATATTGCAACGATCAGATTCCAAC
Found at i:68485348 original size:12 final size:13
Alignment explanation
Indices: 68485331--68485359 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
68485321 CTCATGCATG
68485331 AATAAATAAA-GC
1 AATAAATAAATGC
68485343 AATAAATAAATGC
1 AATAAATAAATGC
68485356 AATA
1 AATA
68485360 GTTATTCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:68487013 original size:24 final size:23
Alignment explanation
Indices: 68486986--68487042 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
68486976 GTACGATGAG
68486986 AAATAAAAAAAATCTAAAAAAACT
1 AAATAAAAAAAATCT-AAAAAACT
** *
68487010 AAATAACTAAAATCTAAATAACT
1 AAATAAAAAAAATCTAAAAAACT
68487033 AAATAAAAAA
1 AAATAAAAAA
68487043 CTAAAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.72, C:0.09, G:0.00, T:0.19
Consensus pattern (23 bp):
AAATAAAAAAAATCTAAAAAACT
Found at i:68487017 original size:8 final size:8
Alignment explanation
Indices: 68487006--68487038 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
68486996 AATCTAAAAA
68487006 AACTAAAT
1 AACTAAAT
68487014 AACTAAA-
1 AACTAAAT
*
68487021 ATCTAAAT
1 AACTAAAT
68487029 AACTAAAT
1 AACTAAAT
68487037 AA
1 AA
68487039 AAAACTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 6 0.27
8 16 0.73
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (8 bp):
AACTAAAT
Found at i:68487036 original size:23 final size:24
Alignment explanation
Indices: 68486994--68487068 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 24
68486984 AGAAATAAAA
68486994 AAAATCTAAAAAAACTAAATAACT
1 AAAATCTAAAAAAACTAAATAACT
* *
68487018 AAAATCTAAATAACTAAATAAAAAACT
1 AAAATCTAAA-AA--AACTAAATAACT
*
68487045 AAAAT-T-AAAACACT-AATAACT
1 AAAATCTAAAAAAACTAAATAACT
68487066 AAA
1 AAA
68487069 TAAAATCGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
21 9 0.21
22 2 0.05
24 12 0.28
25 4 0.09
26 1 0.02
27 15 0.35
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (24 bp):
AAAATCTAAAAAAACTAAATAACT
Found at i:68495057 original size:3 final size:3
Alignment explanation
Indices: 68495044--68495073 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
68495034 TAGCTATGAA
*
68495044 AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
68495074 TTTTCATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:68495678 original size:16 final size:16
Alignment explanation
Indices: 68495637--68495675 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
68495627 TTATTTGTTT
68495637 ATTAAAT-TAAT--TA
1 ATTAAATATAATAATA
68495650 ATTAAATATAATAATA
1 ATTAAATATAATAATA
68495666 ATTAAA-ATAA
1 ATTAAATATAA
68495676 ATATCTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.30
14 4 0.17
15 4 0.17
16 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATTAAATATAATAATA
Found at i:68495799 original size:14 final size:17
Alignment explanation
Indices: 68495780--68495817 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
68495770 ATTTATTTCT
68495780 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
68495794 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
68495811 TAATATA
1 TAATATA
68495818 CTTTATAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:68495835 original size:11 final size:11
Alignment explanation
Indices: 68495797--68495835 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
68495787 ATATTTATAA
68495797 TATAATTAATT
1 TATAATTAATT
*
68495808 TAATAATATACTT
1 T-ATAAT-TAATT
68495821 TATAATTAATT
1 TATAATTAATT
68495832 TATA
1 TATA
68495836 TATTTATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 10 0.42
13 5 0.21
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TATAATTAATT
Found at i:68497261 original size:6 final size:6
Alignment explanation
Indices: 68497250--68497291 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
68497240 GGTTAGTTTA
**
68497250 ATTTTT ATTTTT ATTTTT -CCTTT ATTTTT ATTTTAT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTT-T ATTTTT
68497292 CTCTTTCCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 3 0.10
6 21 0.70
7 6 0.20
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:68497278 original size:24 final size:25
Alignment explanation
Indices: 68497250--68497297 Score: 82
Period size: 23 Copynumber: 2.0 Consensus size: 25
68497240 GGTTAGTTTA
68497250 ATTTTTATTTT-TATTTTTC-CTTT
1 ATTTTTATTTTATATTTTTCTCTTT
68497273 ATTTTTATTTTATATTTTTCTCTTT
1 ATTTTTATTTTATATTTTTCTCTTT
68497298 CCCAAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 11 0.48
24 8 0.35
25 4 0.17
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (25 bp):
ATTTTTATTTTATATTTTTCTCTTT
Found at i:68498685 original size:18 final size:20
Alignment explanation
Indices: 68498646--68498685 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
68498636 ATAGACTATC
68498646 TTTTAATTATCGGTTATATA
1 TTTTAATTATCGGTTATATA
*
68498666 TTTTAATTCT-GGTT-TATA
1 TTTTAATTATCGGTTATATA
68498684 TT
1 TT
68498686 GAGAGTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 4 0.21
20 9 0.47
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (20 bp):
TTTTAATTATCGGTTATATA
Found at i:68501989 original size:87 final size:87
Alignment explanation
Indices: 68501843--68502444 Score: 866
Period size: 87 Copynumber: 6.9 Consensus size: 87
68501833 ACTTCAATCT
* *
68501843 GCTCCACTGCAACCGATGGAGGCAAGGCCTT-GTTTTCGATCTACTTTGCTGTTAATGCAGGAAG
1 GCTCCACTGCAACCGATGGAGGCAAGG-CTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
* *
68501907 ACAAGATCTGCTATCTTTAATCA
65 GCAAGATCTGCTATCTTTAACCA
* * * *
68501930 GCTCCACTACATCCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCACTATTAATGCAGGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
* *
68501995 CAAGATCTGCTATCTTCAACCG
66 CAAGATCTGCTATCTTTAACCA
* * * *
68502017 GCTCTATTGAAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAATG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
*
68502082 AAAGATCTGCTATCTTTAACCA
66 CAAGATCTGCTATCTTTAACCA
** * ** *
68502104 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTTTATTTGCTTCATTGTTAATGTAGGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
68502169 CAAGATCTGCTATCTTTAACCA
66 CAAGATCTGCTATCTTTAACCA
* *
68502191 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCACTGTTAATGCAAGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
* *
68502256 CAAGATCTACTATCTTTGACCA
66 CAAGATCTGCTATCTTTAACCA
* * *
68502278 GCTCCACTGCAACTGATGGAGGCAAGGCTTCGTTTTCGATCTACTTTGCTGTTAATGCAGGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
*
68502343 CAAGATCTACT-TCTTTAACCA
66 CAAGATCTGCTATCTTTAACCA
* * * * *
68502364 GCTCCACTACAACCGATGGAGGCAAGACTTTGTTTTTGATCTGCTTCGCTGTCAATGCAGGAAGG
1 GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
*
68502429 CAAGATCTGTTATCTT
66 CAAGATCTGCTATCTT
68502445 CACTGATTTG
Statistics
Matches: 457, Mismatches: 56, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
86 78 0.17
87 379 0.83
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (87 bp):
GCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
CAAGATCTGCTATCTTTAACCA
Found at i:68502303 original size:44 final size:44
Alignment explanation
Indices: 68502166--68502303 Score: 113
Period size: 44 Copynumber: 3.2 Consensus size: 44
68502156 TAATGTAGGA
* * *
68502166 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
1 AGGCAAGATCTACTATCTTTGACCAGCTCCACTGCAACTGATGG
* * * * * * * * *
68502210 AGGCAAG-GCTTCGT-T-TTCGATCTGCTTCACTGTTAA-TGCAAGA
1 AGGCAAGATCTAC-TATCTTTGACCAGCTCCACTG-CAACTG-ATGG
68502253 AGGCAAGATCTACTATCTTTGACCAGCTCCACTGCAACTGATGG
1 AGGCAAGATCTACTATCTTTGACCAGCTCCACTGCAACTGATGG
68502297 AGGCAAG
1 AGGCAAG
68502304 GCTTCGTTTT
Statistics
Matches: 67, Mismatches: 20, Indels: 14
0.66 0.20 0.14
Matches are distributed among these distances:
42 13 0.19
43 16 0.24
44 23 0.34
45 15 0.22
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (44 bp):
AGGCAAGATCTACTATCTTTGACCAGCTCCACTGCAACTGATGG
Found at i:68503686 original size:7 final size:7
Alignment explanation
Indices: 68503676--68503729 Score: 85
Period size: 7 Copynumber: 8.0 Consensus size: 7
68503666 TTTTACTTTT
68503676 TCATTTC
1 TCATTTC
68503683 TCATTTC
1 TCATTTC
68503690 TCATTTC
1 TCATTTC
68503697 TCATTTC
1 TCATTTC
*
68503704 CCATTTC
1 TCATTTC
68503711 TCATTT-
1 TCATTTC
68503717 TCATTT-
1 TCATTTC
68503723 TCATTTC
1 TCATTTC
68503730 ATTTTTTTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
6 12 0.27
7 32 0.73
ACGTcount: A:0.15, C:0.28, G:0.00, T:0.57
Consensus pattern (7 bp):
TCATTTC
Found at i:68504716 original size:41 final size:41
Alignment explanation
Indices: 68504636--68504713 Score: 131
Period size: 40 Copynumber: 1.9 Consensus size: 41
68504626 TCATTTTCAT
68504636 TTTGACTTTGATTTTTGATTTTTCTTTTTCTTCTTTTTGAC
1 TTTGACTTTGATTTTTGATTTTTCTTTTTCTTCTTTTTGAC
* *
68504677 TTTGATTTTGA-TTTTGATTTTTGTTTTTCTTCTTTTT
1 TTTGACTTTGATTTTTGATTTTTCTTTTTCTTCTTTTT
68504714 TGAATTGGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
40 25 0.71
41 10 0.29
ACGTcount: A:0.09, C:0.09, G:0.10, T:0.72
Consensus pattern (41 bp):
TTTGACTTTGATTTTTGATTTTTCTTTTTCTTCTTTTTGAC
Found at i:68514038 original size:6 final size:6
Alignment explanation
Indices: 68514029--68514162 Score: 169
Period size: 6 Copynumber: 21.8 Consensus size: 6
68514019 TTTAATTTGA
* * *
68514029 ATTTTT ATTTTT ATTTTT ACTTTT ATTTTT ATTTTT ATTTTC ATTTTC
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
* * * * *
68514077 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
68514125 ATTTTT ATTTTT ATTTTTTT ATTTTT ATTTTAT ATTTT
1 ATTTTT ATTTTT A--TTTTT ATTTTT ATTTT-T ATTTT
68514163 AAAATTTTCT
Statistics
Matches: 121, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
6 109 0.90
7 6 0.05
8 6 0.05
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:68515344 original size:29 final size:29
Alignment explanation
Indices: 68515086--68515343 Score: 196
Period size: 29 Copynumber: 8.9 Consensus size: 29
68515076 TCATCGATCA
* **
68515086 ATGAAAAGGGATAGTTTTGACCATCAACT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* *
68515115 ATGAAAAGGGATGGTGATGACCATCATAC-
1 ATGAAAAGGGATGGTTACGACCATCA-ACT
* * * *
68515144 ATTGAAAA-GGATAGTTTCGACTATCGACT
1 A-TGAAAAGGGATGGTTACGACCATCAACT
* ** * *
68515173 ATGAAAAGGGATAGTTTTGACTATTAACT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* * * * * *
68515202 ATGAAAATGGATAGTTTCGACTATCGATT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* * *
68515231 ATAAAAAGGAATGGTCACGACCATCAACT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* * *
68515260 ATGGAAAGGGATGGTGACGACCATCAATT
1 ATGAAAAGGGATGGTTACGACCATCAACT
* * * **
68515289 AATGGAAAGGGATGGTGACAACCATCGGCT
1 -ATGAAAAGGGATGGTTACGACCATCAACT
68515319 ATGAAAAGGGATGGTTACGACCATC
1 ATGAAAAGGGATGGTTACGACCATC
68515344 GTTAGTACAC
Statistics
Matches: 186, Mismatches: 38, Indels: 10
0.79 0.16 0.04
Matches are distributed among these distances:
28 8 0.04
29 145 0.78
30 33 0.18
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTACGACCATCAACT
Found at i:68528751 original size:120 final size:120
Alignment explanation
Indices: 68528597--68529084 Score: 851
Period size: 120 Copynumber: 4.1 Consensus size: 120
68528587 TTCAAATTTT
68528597 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
* *
68528662 TAATATTAAGAATTTTATTAAATTATATATTTTTATTGAATTATATTTAAAAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
*
68528717 ATTAATTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC---TAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
*
68528779 TAATATTAAGAATTTTATTAAATTATATATTTTTACTAAATTATATTTTTAATAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATA--TTTAATAATA
*
68528836 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
68528901 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
*
68528956 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATACAAGAATATT
1 ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
*
68529021 TAATATTAACAATTTTATTAAATTATATA-TTTT-TTAAATTATATTTAATAATA
66 TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
*
68529074 ATTATGTTAAA
1 ATTATTTTAAA
68529085 ATATGATTAA
Statistics
Matches: 353, Mismatches: 10, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
117 53 0.15
118 30 0.08
119 64 0.18
120 152 0.43
122 54 0.15
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
ATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATT
TAATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATA
Found at i:68528812 original size:18 final size:17
Alignment explanation
Indices: 68528791--68528828 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
68528781 ATATTAAGAA
*
68528791 TTTTATTAAATTATATAT
1 TTTTACTAAATTATAT-T
68528809 TTTTACTAAATTATATT
1 TTTTACTAAATTATATT
68528826 TTT
1 TTT
68528829 AATAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTACTAAATTATATT
Found at i:68529059 original size:16 final size:17
Alignment explanation
Indices: 68529032--68529064 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
68529022 AATATTAACA
68529032 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
68529049 ATTTT-TTAAATTATAT
1 ATTTTATTAAATTATAT
68529065 TTAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:68529305 original size:45 final size:44
Alignment explanation
Indices: 68529222--68529317 Score: 149
Period size: 45 Copynumber: 2.2 Consensus size: 44
68529212 ATTACAACAT
*
68529222 CATTCCATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
*
68529266 CATTACATTCAACCAAACA-ATTGAATTACTATTACGCCTCTATTC
1 CATTACATTCAACCAAACACA-AGAA-TACTATTACGCCTCTATTC
68529311 CATTACA
1 CATTACA
68529318 GCTCTATTCC
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.44
45 26 0.54
ACGTcount: A:0.36, C:0.29, G:0.04, T:0.30
Consensus pattern (44 bp):
CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
Found at i:68529322 original size:16 final size:16
Alignment explanation
Indices: 68529303--68529431 Score: 231
Period size: 16 Copynumber: 8.1 Consensus size: 16
68529293 ACTATTACGC
68529303 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
*
68529319 CTCTATTCCATTACAC
1 CTCTATTCCATTACAG
68529335 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
*
68529351 CTCTATTCCATTACAC
1 CTCTATTCCATTACAG
68529367 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
*
68529383 CTCTATTCCATTACAC
1 CTCTATTCCATTACAG
68529399 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
68529415 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
68529431 C
1 C
68529432 GAACCAAACG
Statistics
Matches: 107, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 107 1.00
ACGTcount: A:0.25, C:0.34, G:0.04, T:0.37
Consensus pattern (16 bp):
CTCTATTCCATTACAG
Found at i:68529338 original size:32 final size:32
Alignment explanation
Indices: 68529296--68529429 Score: 259
Period size: 32 Copynumber: 4.2 Consensus size: 32
68529286 TTGAATTACT
*
68529296 ATTACGCCTCTATTCCATTACAGCTCTATTCC
1 ATTACACCTCTATTCCATTACAGCTCTATTCC
68529328 ATTACACCTCTATTCCATTACAGCTCTATTCC
1 ATTACACCTCTATTCCATTACAGCTCTATTCC
68529360 ATTACACCTCTATTCCATTACAGCTCTATTCC
1 ATTACACCTCTATTCCATTACAGCTCTATTCC
68529392 ATTACACCTCTATTCCATTACAGCTCTATTCC
1 ATTACACCTCTATTCCATTACAGCTCTATTCC
68529424 ATTACA
1 ATTACA
68529430 GCGAACCAAA
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 101 1.00
ACGTcount: A:0.25, C:0.34, G:0.04, T:0.37
Consensus pattern (32 bp):
ATTACACCTCTATTCCATTACAGCTCTATTCC
Found at i:68534033 original size:50 final size:50
Alignment explanation
Indices: 68533923--68534373 Score: 530
Period size: 50 Copynumber: 8.8 Consensus size: 50
68533913 ATTTGGCTAA
*
68533923 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGAT---G
* * **
68533979 AGAGGTCCCATGTAAGACCATATTTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
68534029 AGAGGTCCCATGTAAGACCATGTCTGGGACATGG-AGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGAGATG
** * *
68534079 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
68534129 AGAACATCTCATGTAAGACCATGTCTGGGACATGG-AGTTGGCACCGAGATG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGAGATG
** * *
68534180 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
68534230 AGAACATCTCATGTAAGACCATGTCTGGGACATGG-AGTTGGCACCGAGATG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGAGATG
** * *
68534281 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
68534331 AGAACATCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
68534374 TGTTATGATC
Statistics
Matches: 339, Mismatches: 47, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
50 177 0.52
51 118 0.35
53 5 0.01
55 2 0.01
56 37 0.11
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:68534373 original size:101 final size:101
Alignment explanation
Indices: 68533931--68534365 Score: 694
Period size: 101 Copynumber: 4.3 Consensus size: 101
68533921 AAAGAGATCC
**
68533931 CATGTAAGACCATGTCTGGGACATGGCA-TTGGCATCCTTGAGATCACGAGAGGTCCCATGTAAG
1 CATGTAAGACCATGTCTGGGACATGG-AGTTGGCA-CC--GAGAT---GAGAGGTCCCCCGTAAG
* * ** * * ** *
68533995 ACCATATTTGGGACATGGTGTTGGCACCGAGATGAG-AGGTCC
59 ACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACATCT
68534037 CATGTAAGACCATGTCTGGGACATGGAGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGT
1 CATGTAAGACCATGTCTGGGACATGGAGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGT
68534102 CTGGGACATGGCATGGGCACCGATATGAGAACATCT
66 CTGGGACATGGCATGGGCACCGATATGAGAACATCT
68534138 CATGTAAGACCATGTCTGGGACATGGAGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGT
1 CATGTAAGACCATGTCTGGGACATGGAGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGT
68534203 CTGGGACATGGCATGGGCACCGATATGAGAACATCT
66 CTGGGACATGGCATGGGCACCGATATGAGAACATCT
68534239 CATGTAAGACCATGTCTGGGACATGGAGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGT
1 CATGTAAGACCATGTCTGGGACATGGAGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGT
68534304 CTGGGACATGGCATGGGCACCGATATGAGAACATCT
66 CTGGGACATGGCATGGGCACCGATATGAGAACATCT
68534340 CATGTAAGACCATGTCTGGGACATGG
1 CATGTAAGACCATGTCTGGGACATGG
68534366 CTTTGGCATG
Statistics
Matches: 316, Mismatches: 11, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
100 45 0.14
101 231 0.73
103 5 0.02
105 3 0.01
106 32 0.10
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (101 bp):
CATGTAAGACCATGTCTGGGACATGGAGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCATGT
CTGGGACATGGCATGGGCACCGATATGAGAACATCT
Found at i:68535722 original size:12 final size:12
Alignment explanation
Indices: 68535705--68535734 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
68535695 CCTCACACGC
68535705 CCGTGTGCTAGG
1 CCGTGTGCTAGG
68535717 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
68535729 CTGTGT
1 CCGTGT
68535735 AACTGTCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:68536624 original size:21 final size:21
Alignment explanation
Indices: 68536595--68536654 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
68536585 CAAACACGCC
*
68536595 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
*
68536616 AACAAAAGCTCATAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
*
68536637 AACAGAAGCTCAAAAGAG
1 AACAGAAGCTCATAAGAG
68536655 TCGATCCACC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.50, C:0.18, G:0.20, T:0.12
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:68539532 original size:2 final size:2
Alignment explanation
Indices: 68539525--68539554 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
68539515 CAAACATAGA
68539525 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
68539555 GTTTAGGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:68540752 original size:14 final size:14
Alignment explanation
Indices: 68540729--68540763 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
68540719 TGGACATGGT
*
68540729 TAATGTCATGCCAG
1 TAATGCCATGCCAG
*
68540743 TAATGCCATGCTAG
1 TAATGCCATGCCAG
68540757 TAATGCC
1 TAATGCC
68540764 TTGTACATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (14 bp):
TAATGCCATGCCAG
Found at i:68540956 original size:8 final size:8
Alignment explanation
Indices: 68540943--68540970 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
68540933 TCTATACTCT
68540943 AAATCGAC
1 AAATCGAC
68540951 AAATCGAC
1 AAATCGAC
68540959 AAATCGAC
1 AAATCGAC
68540967 AAAT
1 AAAT
68540971 AGGGGTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.54, C:0.21, G:0.11, T:0.14
Consensus pattern (8 bp):
AAATCGAC
Found at i:68544752 original size:13 final size:13
Alignment explanation
Indices: 68544712--68544776 Score: 70
Period size: 13 Copynumber: 5.5 Consensus size: 13
68544702 CGATTTTTCT
68544712 TAAATATTATCAC
1 TAAATATTATCAC
*
68544725 TACATA--ATC-C
1 TAAATATTATCAC
68544735 TAAATATTATCAC
1 TAAATATTATCAC
*
68544748 TAAATA--AT-TC
1 TAAATATTATCAC
68544758 TAAATATTATCAC
1 TAAATATTATCAC
68544771 TAAATA
1 TAAATA
68544777 ATTCAAAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
10 13 0.31
11 5 0.12
12 5 0.12
13 19 0.45
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:68544779 original size:23 final size:23
Alignment explanation
Indices: 68544712--68544785 Score: 121
Period size: 23 Copynumber: 3.2 Consensus size: 23
68544702 CGATTTTTCT
* *
68544712 TAAATATTATCACTACATAATCC
1 TAAATATTATCACTAAATAATTC
68544735 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
68544758 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
*
68544781 AAAAT
1 TAAAT
68544786 TTAAAAATCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTC
Found at i:68545637 original size:30 final size:30
Alignment explanation
Indices: 68545576--68545637 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
68545566 TTTAACGGTC
* *
68545576 ATATTACAACGGTTAGATTCCAATGTTCAT
1 ATATTACAACAGTTAGATTCCAATGTCCAT
*
68545606 ATATTGCAACAGTTAGATTCCAATAG-CCAT
1 ATATTACAACAGTTAGATTCCAAT-GTCCAT
68545636 AT
1 AT
68545638 TGCAATGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (30 bp):
ATATTACAACAGTTAGATTCCAATGTCCAT
Found at i:68546092 original size:10 final size:10
Alignment explanation
Indices: 68546079--68546105 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
68546069 TAAAAAATAA
68546079 AAATAAACAC
1 AAATAAACAC
68546089 AAATAAACAC
1 AAATAAACAC
68546099 AAATAAA
1 AAATAAA
68546106 TAATAATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.11
Consensus pattern (10 bp):
AAATAAACAC
Found at i:68546770 original size:19 final size:18
Alignment explanation
Indices: 68546746--68546781 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
68546736 TAATAAATTA
*
68546746 TTTAATATTAAAATTTTAT
1 TTTAATAAT-AAATTTTAT
68546765 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
68546782 ACATTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:68547864 original size:2 final size:2
Alignment explanation
Indices: 68547859--68547894 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
68547849 CTATTTCCAA
68547859 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
68547895 TTTAATTCGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:68561066 original size:22 final size:22
Alignment explanation
Indices: 68561040--68561083 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
68561030 GAAAATAATC
*
68561040 AAAATTAATCAAAATTTGACAT
1 AAAATTAATCAAAATTTAACAT
*
68561062 AAAATTAATTAAAATTTAACAT
1 AAAATTAATCAAAATTTAACAT
68561084 GTTCATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAATTAATCAAAATTTAACAT
Found at i:68563530 original size:43 final size:43
Alignment explanation
Indices: 68563476--68563563 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
68563466 GTTAATTATG
68563476 AACTCGTATATAATCACATATTTATAACAAGCATCTTTATGCT
1 AACTCGTATATAATCACATATTTATAACAAGCATCTTTATGCT
* *
68563519 AACTCGTATATAATCACATATTTATAACGAGCATTTTTATGCT
1 AACTCGTATATAATCACATATTTATAACAAGCATCTTTATGCT
68563562 AA
1 AA
68563564 GTTCACTACT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.38
Consensus pattern (43 bp):
AACTCGTATATAATCACATATTTATAACAAGCATCTTTATGCT
Found at i:68565493 original size:76 final size:76
Alignment explanation
Indices: 68565402--68565648 Score: 234
Period size: 76 Copynumber: 3.3 Consensus size: 76
68565392 AACACATTAG
* * * * * **
68565402 TTTCTCTAAATTGAATTACTACGACAAATTATGCAAAATATGTTAAGAATTGAGACATCACGTAA
1 TTTCTTTAAACTGAATCACTACAACAAACTATGCAAAATATGTTAAGAATTGAGACATCACACAA
68565467 ATACAATATTT
66 ATACAATATTT
* * * *
68565478 TTTCTTTAAACTGAATCACTATAACAAACTATGTAAAATATGTTATGAATTGAGACATGACACAA
1 TTTCTTTAAACTGAATCACTACAACAAACTATGCAAAATATGTTAAGAATTGAGACATCACACAA
*
68565543 ATTCAATATTT
66 ATACAATATTT
** * * * * *
68565554 TCTTCTTTTAAGTTGAATCACTATAACAAACTATGC--AA-ATGTTATGAACTGAGACATGAGAC
1 T-TTC-TTTAAACTGAATCACTACAACAAACTATGCAAAATATGTTAAGAATTGAGACATCACAC
* *
68565616 AAATATACTA-TT
64 AAATACAATATTT
*
68565628 TTTCTTCAAA-TCGAATCACTA
1 TTTCTTTAAACT-GAATCACTA
68565649 TATGAAACTC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
71 1 0.01
72 13 0.09
73 3 0.02
74 3 0.02
75 29 0.20
76 67 0.46
77 3 0.02
78 27 0.18
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (76 bp):
TTTCTTTAAACTGAATCACTACAACAAACTATGCAAAATATGTTAAGAATTGAGACATCACACAA
ATACAATATTT
Found at i:68566188 original size:2 final size:2
Alignment explanation
Indices: 68566181--68566205 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
68566171 GTTTGGGTAT
68566181 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
68566206 TAATTCTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68570356 original size:53 final size:48
Alignment explanation
Indices: 68570240--68570356 Score: 135
Period size: 48 Copynumber: 2.3 Consensus size: 48
68570230 GATTTCTTGC
* *
68570240 AATTTGTTTAGTATAGGGTTACTTACCATTCTAAGATTTTTATTTTTT
1 AATTTGTTTAGTATAGGCTTACTTACCATTCTAAGATTTTTATTTTGT
* * *
68570288 AATTTGTGTAGTATAGGCTTACTTACCATTTTAAGGTTTCCTTATAGTGTTGT
1 AATTTGTTTAGTATAGGCTTACTTACCATTCTAAGATTT--TTAT--T-TTGT
*
68570341 AATTTGTTTAATATAG
1 AATTTGTTTAGTATAG
68570357 ATTATGGATA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
48 35 0.61
50 4 0.07
52 1 0.02
53 17 0.30
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (48 bp):
AATTTGTTTAGTATAGGCTTACTTACCATTCTAAGATTTTTATTTTGT
Found at i:68570697 original size:31 final size:31
Alignment explanation
Indices: 68570658--68570728 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
68570648 AAAATTTACA
* **
68570658 ATTT-AGTCATTAAATTATTTGAAAGTTTTC
1 ATTTAAGTCATTAAACTATTCAAAAGTTTTC
* *
68570688 ATTTAAGTCATTGAACTATTCAAAAGTTTTT
1 ATTTAAGTCATTAAACTATTCAAAAGTTTTC
68570719 ATTTAAGTCA
1 ATTTAAGTCA
68570729 CTGGATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.35, C:0.08, G:0.10, T:0.46
Consensus pattern (31 bp):
ATTTAAGTCATTAAACTATTCAAAAGTTTTC
Found at i:68572713 original size:31 final size:31
Alignment explanation
Indices: 68572678--68572742 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
68572668 TACAAATTTA
* *
68572678 TCATTGAATTGTTTGAAAGTTTTCATTTAAG
1 TCATTGAATTATTTAAAAGTTTTCATTTAAG
*
68572709 TCATTGAATTATTTAAAAGTTTTTATTTAAG
1 TCATTGAATTATTTAAAAGTTTTCATTTAAG
68572740 TCA
1 TCA
68572743 CTAGGTTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (31 bp):
TCATTGAATTATTTAAAAGTTTTCATTTAAG
Found at i:68573405 original size:43 final size:42
Alignment explanation
Indices: 68573340--68573537 Score: 279
Period size: 43 Copynumber: 4.6 Consensus size: 42
68573330 CGCTGTTGTC
* *
68573340 AACGCCGCTATAGATCATGACCTTTAGCGGCGTTTTTCCCACA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTT-CCACA
* * *
68573383 AACGCCGCTATAGATCAGGACCTTTAGTGGCGCTTTTACACA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCACA
* * *
68573425 AACGCCGCTATAGCTCAGGACCTTTAGCGGCGCTTTTCCCAAA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTT-CCACA
* *
68573468 AATGTCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCACA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGC-TTTTCCACA
68573511 AACGCCGCTATAGATCAAGACCTTTAG
1 AACGCCGCTATAGATCAAGACCTTTAG
68573538 TATTAAGTAT
Statistics
Matches: 138, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
42 39 0.28
43 95 0.69
44 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (42 bp):
AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCACA
Found at i:68573483 original size:85 final size:86
Alignment explanation
Indices: 68573340--68573537 Score: 299
Period size: 85 Copynumber: 2.3 Consensus size: 86
68573330 CGCTGTTGTC
* * * *
68573340 AACGCCGCTATAGATCATGACCTTTAGCGGCGTTTTTCCCACAAACGCCGCTATAGATCAGGACC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGATCAAGACC
*
68573405 TTTAGTGGCGC-TTTTACACA
66 TTTAGCGGCGCTTTTTACACA
* * * *
68573425 AACGCCGCTATAGCTCAGGACCTTTAGCGGCGCTTTTCCCAAAAATGTCGCTATAGATCAAGACC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGATCAAGACC
*
68573490 TTTAGCGGCGCTTTTTCCACA
66 TTTAGCGGCGCTTTTTACACA
68573511 AACGCCGCTATAGATCAAGACCTTTAG
1 AACGCCGCTATAGATCAAGACCTTTAG
68573538 TATTAAGTAT
Statistics
Matches: 101, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 68 0.67
86 33 0.33
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (86 bp):
AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCAAAAACGCCGCTATAGATCAAGACC
TTTAGCGGCGCTTTTTACACA
Found at i:68574064 original size:29 final size:29
Alignment explanation
Indices: 68574022--68574078 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
68574012 ACTTTTAGCG
68574022 GCGCTTTGAAAAGCGCCGCAACAGAAGCT
1 GCGCTTTGAAAAGCGCCGCAACAGAAGCT
*
68574051 GCGCTTTGAAAAGCGCTGCAACAGAAGC
1 GCGCTTTGAAAAGCGCCGCAACAGAAGC
68574079 CGCTAATGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.28, T:0.14
Consensus pattern (29 bp):
GCGCTTTGAAAAGCGCCGCAACAGAAGCT
Found at i:68574176 original size:43 final size:43
Alignment explanation
Indices: 68574128--68574222 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 43
68574118 GCGCTTCCCT
* *
68574128 ACAAACGCCGCGAAAG-ACCATGATCTTTAGGGGCACTTTTTCC
1 ACAAACGCCGCGAAAGAACC-TGATCTTTAGCGGCACTTTTACC
* * *
68574171 ACAAACGCCGCTAAAGAACCTTATCTTTAGCGGCGCTTTTACC
1 ACAAACGCCGCGAAAGAACCTGATCTTTAGCGGCACTTTTACC
*
68574214 AAAAACGCC
1 ACAAACGCC
68574223 ACTAAAAGCC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 42 0.93
44 3 0.07
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (43 bp):
ACAAACGCCGCGAAAGAACCTGATCTTTAGCGGCACTTTTACC
Found at i:68574607 original size:21 final size:21
Alignment explanation
Indices: 68574581--68574693 Score: 118
Period size: 21 Copynumber: 5.4 Consensus size: 21
68574571 TTTGACGCTT
68574581 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
**
68574602 CTCTGCTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
68574623 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
68574644 CTGTACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
68574665 CTCTACTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
68574686 ATCTGCTT
1 CTCTGCTT
68574694 TAAGCTGCTG
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 80 1.00
ACGTcount: A:0.05, C:0.42, G:0.17, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:68574754 original size:66 final size:66
Alignment explanation
Indices: 68574670--68574829 Score: 207
Period size: 66 Copynumber: 2.4 Consensus size: 66
68574660 GCCGCCTCTA
* *
68574670 CTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTTGTTGAACCT
1 CTTCTCTCGCTGCTGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTTT-TTGAACCT
68574733 CAG
64 CAG
* *
68574736 CTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTCA
1 CTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTCA
68574801 G
66 G
* * * * *
68574802 CTCCTCTCGATGTTGCCTCCGCTTTAAG
1 CTTCTCTCGCTGCTGCATCTGCTTTAAG
68574830 TTGTGTAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
65 1 0.01
66 76 0.93
67 5 0.06
ACGTcount: A:0.13, C:0.28, G:0.19, T:0.40
Consensus pattern (66 bp):
CTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTCA
G
Found at i:68580258 original size:16 final size:16
Alignment explanation
Indices: 68580237--68580459 Score: 99
Period size: 16 Copynumber: 13.9 Consensus size: 16
68580227 ATAATTAAGC
68580237 TATGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
*
68580253 TATGTAAGTTATTTAT
1 TATGTAAGTTATGTAT
* *
68580269 TATGAAAATTA---AT
1 TATGTAAGTTATGTAT
*
68580282 TAAT-TAAGTTGTGTAT
1 T-ATGTAAGTTATGTAT
* * *
68580298 TATGAAAATTATG--C
1 TATGTAAGTTATGTAT
68580312 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
68580330 CATATAAGTTATGTAT
1 TATGTAAGTTATGTAT
68580346 TATGTAAGTTATGTAAGT
1 TATGTAAGTTATGT-A-T
* *
68580364 TAT-TTA-TTATGCAAAT
1 TATGTAAGTTATG--TAT
*
68580380 TAAGTAAGTTATGTAATT
1 TATGTAAGTTATGT-A-T
* ** *
68580398 TACGAATAA-TTA-AAAA
1 TATG--TAAGTTATGTAT
* *
68580414 AATGTAAGTTATGTAAG
1 TATGTAAGTTATGT-AT
68580431 T-TGTAAGTTATGTAT
1 TATGTAAGTTATGTAT
68580446 TATGTAAGTTATGT
1 TATGTAAGTTATGT
68580460 GAGTTATTTA
Statistics
Matches: 151, Mismatches: 33, Indels: 46
0.66 0.14 0.20
Matches are distributed among these distances:
13 7 0.05
14 16 0.11
15 7 0.05
16 80 0.53
17 10 0.07
18 25 0.17
19 3 0.02
20 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (16 bp):
TATGTAAGTTATGTAT
Found at i:68580279 original size:25 final size:25
Alignment explanation
Indices: 68580251--68580394 Score: 96
Period size: 25 Copynumber: 5.7 Consensus size: 25
68580241 TAAGTTATGT
*
68580251 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATGTATTATGAAA
* *
68580276 ATTAATTAATTAAGTTGTGTATTATGAAA
1 ATT-A-T--GTAAGTTATGTATTATGAAA
* * *
68580305 ATTATGCTATG-TAAG--TTATGTAA
1 ATTATG-TAAGTTATGTATTATGAAA
* * * *
68580328 GTCATATAAGTTATGTATTATGTAA
1 ATTATGTAAGTTATGTATTATGAAA
* * *
68580353 GTTATGTAAGTTATTTATTATGCAA
1 ATTATGTAAGTTATGTATTATGAAA
*
68580378 ATTAAGTAAGTTATGTA
1 ATTATGTAAGTTATGTA
68580395 ATTTACGAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 16
0.72 0.16 0.13
Matches are distributed among these distances:
22 3 0.03
23 13 0.14
25 48 0.53
26 4 0.04
27 2 0.02
28 1 0.01
29 20 0.22
ACGTcount: A:0.38, C:0.02, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATGTATTATGAAA
Found at i:68580324 original size:9 final size:9
Alignment explanation
Indices: 68580312--68580969 Score: 188
Period size: 9 Copynumber: 74.7 Consensus size: 9
68580302 AAAATTATGC
68580312 TATGTAAGT
1 TATGTAAGT
68580321 TATGTAAGT
1 TATGTAAGT
* *
68580330 CATATAAGT
1 TATGTAAGT
68580339 TATGT-A-T
1 TATGTAAGT
68580346 TATGTAAGT
1 TATGTAAGT
68580355 TATGTAAGT
1 TATGTAAGT
*
68580364 TAT-TTA-T
1 TATGTAAGT
* *
68580371 TATGCAAAT
1 TATGTAAGT
*
68580380 TAAGTAAGT
1 TATGTAAGT
*
68580389 TATGTAATT
1 TATGTAAGT
*
68580398 TACG-AA-T
1 TATGTAAGT
* **
68580405 AAT-TAAAAA
1 TATGT-AAGT
*
68580414 AATGTAAGT
1 TATGTAAGT
68580423 TATGTAAG-
1 TATGTAAGT
68580431 T-TGTAAGT
1 TATGTAAGT
68580439 TATGT-A-T
1 TATGTAAGT
68580446 TATGTAAGT
1 TATGTAAGT
*
68580455 TATGTGAGT
1 TATGTAAGT
*
68580464 TAT-TTA-T
1 TATGTAAGT
* *
68580471 TATGCAAAT
1 TATGTAAGT
*
68580480 TAAGTAAGT
1 TATGTAAGT
*
68580489 TATGTAATT
1 TATGTAAGT
*
68580498 TACG-AA-T
1 TATGTAAGT
* **
68580505 AAT-TAAAAA
1 TATGT-AAGT
*
68580514 AATGTAAGT
1 TATGTAAGT
68580523 TATGTAAG-
1 TATGTAAGT
68580531 T-TGTAAGT
1 TATGTAAGT
68580539 TATGTAAGT
1 TATGTAAGT
*
68580548 TATGTATA-A
1 TATGTA-AGT
68580557 TAT-TAA-T
1 TATGTAAGT
** *
68580564 TAACTAATT
1 TATGTAAGT
*
68580573 TATGTAATT
1 TATGTAAGT
*
68580582 TATGTATA-A
1 TATGTA-AGT
68580591 TAT-TAA-T
1 TATGTAAGT
68580598 TAAT-TAAGT
1 T-ATGTAAGT
*
68580607 TATGTAATT
1 TATGTAAGT
*
68580616 TATGTATAATAT
1 TATG--TAA-GT
68580628 TAATGTAAGT
1 T-ATGTAAGT
*
68580638 TATGTATA-A
1 TATGTA-AGT
*
68580647 TATGTATAATAT
1 TATG--TAA-GT
68580659 TAATGTAAGT
1 T-ATGTAAGT
68580669 TATGTAAG-
1 TATGTAAGT
68580677 T-TGTAAGT
1 TATGTAAGT
68580685 TATGTAAGT
1 TATGTAAGT
*
68580694 TATGTATA-A
1 TATGTA-AGT
68580703 TAT-TAA-T
1 TATGTAAGT
** *
68580710 TAACTAATT
1 TATGTAAGT
*
68580719 TATGTAATT
1 TATGTAAGT
*
68580728 TATGTATA-A
1 TATGTA-AGT
68580737 TAT-TAA-T
1 TATGTAAGT
68580744 TAAT-TAAGT
1 T-ATGTAAGT
*
68580753 TATGTAATT
1 TATGTAAGT
*
68580762 TATGTATAATAT
1 TATG--TAA-GT
68580774 TAATGTAAGT
1 T-ATGTAAGT
*
68580784 TATGTATA-A
1 TATGTA-AGT
*
68580793 TATGTATAATAT
1 TATG--TAA-GT
68580805 TAATGTAAGT
1 T-ATGTAAGT
68580815 TATGTAAG-
1 TATGTAAGT
68580823 T-TGTAAGT
1 TATGTAAGT
68580831 TATGTAAGT
1 TATGTAAGT
*
68580840 TATGTATA-A
1 TATGTA-AGT
68580849 TAT-TAA-T
1 TATGTAAGT
** *
68580856 TAACTAATT
1 TATGTAAGT
*
68580865 TATGTAATT
1 TATGTAAGT
*
68580874 TATGTATA-A
1 TATGTA-AGT
68580883 TAT-TAA-T
1 TATGTAAGT
68580890 TAAT-TAAGT
1 T-ATGTAAGT
*
68580899 TATGTAATT
1 TATGTAAGT
*
68580908 TATGTATAATAT
1 TATG--TAA-GT
68580920 TAATGTAAGT
1 T-ATGTAAGT
*
68580930 TATGTATA-A
1 TATGTA-AGT
68580939 TAT-TAA-T
1 TATGTAAGT
*
68580946 TATTTAAGT
1 TATGTAAGT
*
68580955 TATGTAATT
1 TATGTAAGT
68580964 TATGTA
1 TATGTA
68580970 TAATACTAAT
Statistics
Matches: 502, Mismatches: 75, Indels: 144
0.70 0.10 0.20
Matches are distributed among these distances:
7 67 0.13
8 73 0.15
9 288 0.57
10 23 0.05
11 28 0.06
12 8 0.02
13 15 0.03
ACGTcount: A:0.40, C:0.01, G:0.13, T:0.46
Consensus pattern (9 bp):
TATGTAAGT
Found at i:68580351 original size:34 final size:33
Alignment explanation
Indices: 68580312--68580495 Score: 119
Period size: 34 Copynumber: 5.5 Consensus size: 33
68580302 AAAATTATGC
*
68580312 TATGTAAGTTATGTAAGTCATATAAGTTATGTAT
1 TATGTAAGTTATGTAAGTCATATAA-TTATGAAT
* *
68580346 TATGTAAGTTATGTAAGTTAT-TTATTATGCAAAT
1 TATGTAAGTTATGTAAGTCATATAATTATG--AAT
* * * *
68580380 TAAGTAAGTTATGTAATTTACGA-ATAATTA-AAAA
1 TATGTAAGTTATGTAA-GT-C-ATATAATTATGAAT
* * *
68580414 AATGTAAGTTATGTAAGT--TGTAAGTTATGTAT
1 TATGTAAGTTATGTAAGTCATATAA-TTATGAAT
* * *
68580446 TATGTAAGTTATGTGAGTTAT-TTATTATGCAAAT
1 TATGTAAGTTATGTAAGTCATATAATTATG--AAT
*
68580480 TAAGTAAGTTATGTAA
1 TATGTAAGTTATGTAA
68580496 TTTACGAATA
Statistics
Matches: 115, Mismatches: 22, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
30 3 0.03
31 3 0.03
32 27 0.23
33 5 0.04
34 70 0.61
35 1 0.01
37 6 0.05
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (33 bp):
TATGTAAGTTATGTAAGTCATATAATTATGAAT
Found at i:68580443 original size:25 final size:24
Alignment explanation
Indices: 68580312--68580553 Score: 86
Period size: 25 Copynumber: 9.6 Consensus size: 24
68580302 AAAATTATGC
*
68580312 TATGTAAGTTATGTAAGTCATATAAGT
1 TATGTAA-TTATGTAAGT--TGTAAGT
68580339 TATGT-ATTATGTAAGTTATGTAAGT
1 TATGTAATTATGTAAG-T-TGTAAGT
* * *
68580364 TAT-TTATTATGCAAATTAAGTAAGT
1 TATGTAATTATGTAAGTT--GTAAGT
* * **
68580389 TATGTAATTTACGAATAA-TT-AAAAA
1 TATGTAA-TTATG--TAAGTTGTAAGT
*
68580414 AATGTAAGTTATGTAAGTTGTAAGT
1 TATGTAA-TTATGTAAGTTGTAAGT
*
68580439 TATGT-ATTATGTAAGTTATGTGAGT
1 TATGTAATTATGTAAG-T-TGTAAGT
* * *
68580464 TAT-TTATTATGCAAATTAAGTAAGT
1 TATGTAATTATGTAAGTT--GTAAGT
* * **
68580489 TATGTAATTTACGAATAA-TT-AAAAA
1 TATGTAA-TTATG--TAAGTTGTAAGT
*
68580514 AATGTAAGTTATGTAAGTTGTAAGT
1 TATGTAA-TTATGTAAGTTGTAAGT
68580539 TATGTAAGTTATGTA
1 TATGTAA-TTATGTA
68580554 TAATATTAAT
Statistics
Matches: 161, Mismatches: 33, Indels: 44
0.68 0.14 0.18
Matches are distributed among these distances:
23 17 0.11
24 10 0.06
25 107 0.66
26 6 0.04
27 13 0.08
28 4 0.02
29 4 0.02
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (24 bp):
TATGTAATTATGTAAGTTGTAAGT
Found at i:68580476 original size:100 final size:100
Alignment explanation
Indices: 68580313--68580553 Score: 428
Period size: 100 Copynumber: 2.4 Consensus size: 100
68580303 AAATTATGCT
*
68580313 ATGTAAGTTATGTAAGTCATATAAGTTATGTATTATGTAAGTTATGTAAGTTATTTATTATGCAA
1 ATGTAAGTTATGTAAGT--TGTAAGTTATGTATTATGTAAGTTATGTAAGTTATTTATTATGCAA
68580378 ATTAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
64 ATTAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
*
68580415 ATGTAAGTTATGTAAGTTGTAAGTTATGTATTATGTAAGTTATGTGAGTTATTTATTATGCAAAT
1 ATGTAAGTTATGTAAGTTGTAAGTTATGTATTATGTAAGTTATGTAAGTTATTTATTATGCAAAT
68580480 TAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
66 TAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
68580515 ATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTA
1 ATGTAAGTTATGTAAGTTGTAAGTTATGT-A-TTATGTA
68580554 TAATATTAAT
Statistics
Matches: 135, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
100 110 0.81
101 1 0.01
102 24 0.18
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (100 bp):
ATGTAAGTTATGTAAGTTGTAAGTTATGTATTATGTAAGTTATGTAAGTTATTTATTATGCAAAT
TAAGTAAGTTATGTAATTTACGAATAATTAAAAAA
Found at i:68580537 original size:16 final size:16
Alignment explanation
Indices: 68580516--68580548 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68580506 ATTAAAAAAA
68580516 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
68580532 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
68580548 T
1 T
68580549 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:68580576 original size:34 final size:34
Alignment explanation
Indices: 68580533--68580821 Score: 186
Period size: 34 Copynumber: 8.4 Consensus size: 34
68580523 TATGTAAGTT
*
68580533 GTAAGTTATGTAAGTTATGTATAATATTAATTAA
1 GTAAGTTATGTAATTTATGTATAATATTAATTAA
* *
68580567 CTAATTTATGTAATTTATGTATAATATTAATTAA
1 GTAAGTTATGTAATTTATGTATAATATTAATTAA
*
68580601 TTAAGTTATGTAATTTATGTATAATATTAA-T--
1 GTAAGTTATGTAATTTATGTATAATATTAATTAA
*
68580632 GTAAGTTATGT-ATAATATGTATAATATTAATGTAA
1 GTAAGTTATGTAAT-TTATGTATAATATTAAT-TAA
* * * * * *
68580667 GTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAATATTA
1 G-TAAGTTA--TGTAATTTATGT-A-TAATAT-TAAT-TAA
* * ** ** *
68580708 ATTAACTAATTTATGTAATTTATGTATAATATTAATTAA
1 GTAAGTTATGTA-----ATTTATGTATAATATTAATTAA
*
68580747 TTAAGTTATGTAATTTATGTATAATATTAA-T--
1 GTAAGTTATGTAATTTATGTATAATATTAATTAA
*
68580778 GTAAGTTATGT-ATAATATGTATAATATTAA-T--
1 GTAAGTTATGTAAT-TTATGTATAATATTAATTAA
68580809 GTAAGTTATGTAA
1 GTAAGTTATGTAA
68580822 GTTGTAAGTT
Statistics
Matches: 199, Mismatches: 37, Indels: 40
0.72 0.13 0.14
Matches are distributed among these distances:
30 4 0.02
31 62 0.31
32 1 0.01
33 3 0.02
34 77 0.39
35 1 0.01
36 5 0.03
38 9 0.05
39 9 0.05
40 10 0.05
41 10 0.05
42 1 0.01
43 7 0.04
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (34 bp):
GTAAGTTATGTAATTTATGTATAATATTAATTAA
Found at i:68580591 original size:84 final size:86
Alignment explanation
Indices: 68580432--68580649 Score: 228
Period size: 84 Copynumber: 2.5 Consensus size: 86
68580422 TTATGTAAGT
* * * ** *
68580432 TGTAAGTTATGT-ATTATGTAAGTTATGTGAGTTATTTATTATGCAAATTAAGTAAGTTATGTAA
1 TGTAAGTTATGTAATTATGTAAGTTATGTAAGTTATGTATAATATAAATTAACTAAGTTATGTAA
68580496 TTTACGAATAAT-TAAAAAAA
66 TTTACGAATAATATAAAAAAA
* * *
68580516 TGTAAGTTATGTAAGT-TGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAATTTATGTAA
1 TGTAAGTTATGTAATTATGTAAGTTATGTAAGTTATGTATAATATAAATTAACTAAGTTATGTAA
* * * **
68580580 TTTATGTATAATATTAATTAA
66 TTTACGAATAATATAAAAAAA
*
68580601 T-TAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATAATAT
1 TGTAAGTTATGTAA-TTATG--TAA-GTT-ATGTAAGTTATGTATAATAT
68580650 GTATAATATT
Statistics
Matches: 110, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
84 74 0.67
85 9 0.08
86 2 0.02
88 3 0.03
89 2 0.02
90 20 0.18
ACGTcount: A:0.39, C:0.01, G:0.14, T:0.45
Consensus pattern (86 bp):
TGTAAGTTATGTAATTATGTAAGTTATGTAAGTTATGTATAATATAAATTAACTAAGTTATGTAA
TTTACGAATAATATAAAAAAA
Found at i:68580640 original size:22 final size:22
Alignment explanation
Indices: 68580608--68580649 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
68580598 TAATTAAGTT
*
68580608 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
68580630 ATGTAAGTTATGTATAATAT
1 ATGTAAGTTATGTATAATAT
68580650 GTATAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:68580683 original size:16 final size:16
Alignment explanation
Indices: 68580662--68580694 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68580652 ATAATATTAA
68580662 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
68580678 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
68580694 T
1 T
68580695 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:68580685 original size:47 final size:47
Alignment explanation
Indices: 68580631--68580855 Score: 155
Period size: 47 Copynumber: 4.7 Consensus size: 47
68580621 ATAATATTAA
68580631 TGTAAGTTATGTATAATATGTATAATATTAATGTAAGTTATGTAAGT
1 TGTAAGTTATGTATAATATGTATAATATTAATGTAAGTTATGTAAGT
* * * *
68580678 TGTAAGTTATGTA-AGTTATGTATAATATTAAT-TAACTAAT-TTA--
1 TGTAAGTTATGTATA-ATATGTATAATATTAATGTAAGTTATGTAAGT
* * *
68580721 TGTAATTTATGTATAATAT-TAATTAATTAAGTT-ATGTAATTTATGTATAAT
1 TGTAAGTTATGTATAATATGT-A-TAA-T-A-TTAATGTAAGTTATGTA-AGT
* *
68580772 AT-TAA-TGTAAGTTATGTATAATATGTATAATATTAATGTAAGTTATGTAAGT
1 -TGTAAGT-TATG-TAT-AAT---ATGTATAATATTAATGTAAGTTATGTAAGT
*
68580824 TGTAAGTTATGTA-AGTTATGTATAATATTAAT
1 TGTAAGTTATGTATA-ATATGTATAATATTAAT
68580856 TAACTAATTT
Statistics
Matches: 138, Mismatches: 16, Indels: 48
0.68 0.08 0.24
Matches are distributed among these distances:
42 1 0.01
43 16 0.12
44 4 0.03
45 3 0.02
46 10 0.07
47 52 0.38
48 1 0.01
49 1 0.01
50 2 0.01
51 9 0.07
52 14 0.10
53 17 0.12
54 1 0.01
55 3 0.02
56 3 0.02
57 1 0.01
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (47 bp):
TGTAAGTTATGTATAATATGTATAATATTAATGTAAGTTATGTAAGT
Found at i:68580685 original size:146 final size:146
Alignment explanation
Indices: 68580514--68580941 Score: 856
Period size: 146 Copynumber: 2.9 Consensus size: 146
68580504 TAATTAAAAA
68580514 AATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAATTTATGTA
1 AATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAATTTATGTA
68580579 ATTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
66 ATTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
68580644 TAATATGTATAATATT
131 TAATATGTATAATATT
68580660 AATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAATTTATGTA
1 AATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAATTTATGTA
68580725 ATTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
66 ATTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
68580790 TAATATGTATAATATT
131 TAATATGTATAATATT
68580806 AATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAATTTATGTA
1 AATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAATTTATGTA
68580871 ATTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
66 ATTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
68580936 TAATAT
131 TAATAT
68580942 TAATTATTTA
Statistics
Matches: 282, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 282 1.00
ACGTcount: A:0.40, C:0.01, G:0.12, T:0.47
Consensus pattern (146 bp):
AATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATGTATAATATTAATTAACTAATTTATGTA
ATTTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTA
TAATATGTATAATATT
Found at i:68580786 original size:22 final size:22
Alignment explanation
Indices: 68580754--68580795 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
68580744 TAATTAAGTT
*
68580754 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
68580776 ATGTAAGTTATGTATAATAT
1 ATGTAAGTTATGTATAATAT
68580796 GTATAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:68580829 original size:16 final size:16
Alignment explanation
Indices: 68580808--68580840 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68580798 ATAATATTAA
68580808 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
68580824 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
68580840 T
1 T
68580841 ATGTATAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:68580868 original size:34 final size:34
Alignment explanation
Indices: 68580826--68580923 Score: 169
Period size: 34 Copynumber: 2.9 Consensus size: 34
68580816 ATGTAAGTTG
*
68580826 TAAGTTATGTAAGTTATGTATAATATTAATTAAC
1 TAAGTTATGTAATTTATGTATAATATTAATTAAC
* *
68580860 TAATTTATGTAATTTATGTATAATATTAATTAAT
1 TAAGTTATGTAATTTATGTATAATATTAATTAAC
68580894 TAAGTTATGTAATTTATGTATAATATTAAT
1 TAAGTTATGTAATTTATGTATAATATTAAT
68580924 GTAAGTTATG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 60 1.00
ACGTcount: A:0.41, C:0.01, G:0.09, T:0.49
Consensus pattern (34 bp):
TAAGTTATGTAATTTATGTATAATATTAATTAAC
Found at i:68580932 original size:22 final size:22
Alignment explanation
Indices: 68580900--68580945 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
68580890 TAATTAAGTT
*
68580900 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
68580922 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
68580944 AT
1 AT
68580946 TATTTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:68581003 original size:51 final size:52
Alignment explanation
Indices: 68580873--68580990 Score: 159
Period size: 56 Copynumber: 2.2 Consensus size: 52
68580863 TTTATGTAAT
* *
68580873 TTATGTATAATATTAATTAATTAAGTTATGTAATTTATGTATAATATTAATGTAA
1 TTATGTATAATATT-ATTATTTAAGTTATGTAATTTATGTATAATACTAA-GT-A
68580928 GTTATGTATAATATTAATTATTTAAGTTATGTAATTTATGTATAATACTAA-T-
1 -TTATGTATAATATT-ATTATTTAAGTTATGTAATTTATGTATAATACTAAGTA
68580980 TTATGTATAAT
1 TTATGTATAAT
68580991 TTTGTAGCTT
Statistics
Matches: 60, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
51 11 0.18
54 1 0.02
56 48 0.80
ACGTcount: A:0.40, C:0.01, G:0.09, T:0.50
Consensus pattern (52 bp):
TTATGTATAATATTATTATTTAAGTTATGTAATTTATGTATAATACTAAGTA
Found at i:68582531 original size:11 final size:11
Alignment explanation
Indices: 68582517--68582553 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
68582507 TTGATACTAC
*
68582517 ATTATAATGAA
1 ATTATAATCAA
68582528 ATTATAATCAA
1 ATTATAATCAA
68582539 ATTATAATCAA
1 ATTATAATCAA
68582550 ATTA
1 ATTA
68582554 GAAAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (11 bp):
ATTATAATCAA
Found at i:68583885 original size:8 final size:10
Alignment explanation
Indices: 68583862--68583898 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
68583852 ATTAATAACT
68583862 ATATATATCC
1 ATATATATCC
*
68583872 ATATATATTC
1 ATATATATCC
68583882 ATATATATCC
1 ATATATATCC
68583892 ATATATA
1 ATATATA
68583899 AGTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATCC
Found at i:68584569 original size:10 final size:10
Alignment explanation
Indices: 68584554--68584590 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
68584544 ATAACTATAT
68584554 ATATATATCC
1 ATATATATCC
*
68584564 ATATATATTC
1 ATATATATCC
68584574 ATATATATCC
1 ATATATATCC
68584584 ATATATA
1 ATATATA
68584591 AGTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATCC
Found at i:68585359 original size:17 final size:17
Alignment explanation
Indices: 68585337--68585369 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68585327 CAAAAAAAAT
*
68585337 GCCGCTAAAGACCATGC
1 GCCGCTAAAGAACATGC
68585354 GCCGCTAAAGAACATG
1 GCCGCTAAAGAACATG
68585370 TTCTTTAGCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.30, G:0.24, T:0.12
Consensus pattern (17 bp):
GCCGCTAAAGAACATGC
Found at i:68585412 original size:42 final size:42
Alignment explanation
Indices: 68585353--68585465 Score: 199
Period size: 42 Copynumber: 2.7 Consensus size: 42
68585343 AAAGACCATG
68585353 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAA
*
68585395 CGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAA
* *
68585437 CGCCGCTAAAGAACATGATGTTTAGCGGC
1 CGCCGCTAAAGAACATGTTCTTTAGCGGC
68585466 ATTTTTTACA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAA
Found at i:68585835 original size:21 final size:20
Alignment explanation
Indices: 68585785--68585835 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
68585775 TTTTTGGCCT
*
68585785 GCTCTGCTTCTCTCGCTGCA
1 GCTCTGCTTCCCTCGCTGCA
* *
68585805 GCTTTCGCTTCCCTCGCTGCC
1 GCTCT-GCTTCCCTCGCTGCA
68585826 GCCTCTGCTT
1 G-CTCTGCTT
68585836 TAAGTTGTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 4 0.16
21 18 0.72
22 3 0.12
ACGTcount: A:0.02, C:0.43, G:0.20, T:0.35
Consensus pattern (20 bp):
GCTCTGCTTCCCTCGCTGCA
Found at i:68591373 original size:25 final size:25
Alignment explanation
Indices: 68591342--68591446 Score: 106
Period size: 25 Copynumber: 4.2 Consensus size: 25
68591332 TAATATATAT
*
68591342 TTATGTATTAAGTAAATTATGTAGG
1 TTATGTATTAAGTAAATTATGTAAG
*
68591367 TTATGTACGTGT-A-TAAGTTATGTAAG
1 TTATGTA--T-TAAGTAAATTATGTAAG
* *
68591393 TTTTGTATTAAGTAAACTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
* * *
68591418 TTGTGTATTATGTAACTTATGTAAG
1 TTATGTATTAAGTAAATTATGTAAG
68591443 TTAT
1 TTAT
68591447 CAAAGTATTG
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.02
24 2 0.03
25 42 0.65
26 17 0.26
27 2 0.03
28 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.19, T:0.46
Consensus pattern (25 bp):
TTATGTATTAAGTAAATTATGTAAG
Found at i:68591392 original size:9 final size:9
Alignment explanation
Indices: 68591353--68591603 Score: 150
Period size: 9 Copynumber: 28.8 Consensus size: 9
68591343 TATGTATTAA
*
68591353 GTAAATTAT
1 GTAAGTTAT
*
68591362 GTAGGTTAT
1 GTAAGTTAT
*
68591371 GTACGTGTA-
1 GTAAGT-TAT
68591380 -TAAGTTAT
1 GTAAGTTAT
*
68591388 GTAAGTTTT
1 GTAAGTTAT
*
68591397 GT-A-TTAA
1 GTAAGTTAT
**
68591404 GTAAACTAT
1 GTAAGTTAT
*
68591413 GTAAGTTGT
1 GTAAGTTAT
68591422 GT-A-TTAT
1 GTAAGTTAT
*
68591429 GTAACTTAT
1 GTAAGTTAT
68591438 GTAAGTTAT
1 GTAAGTTAT
**
68591447 CAAAG-TATT
1 GTAAGTTA-T
*
68591456 GTATGTTAT
1 GTAAGTTAT
68591465 GTAAG-T-T
1 GTAAGTTAT
68591472 GTAAGTTAT
1 GTAAGTTAT
*
68591481 -TATGTATTAT
1 GTAAG--TTAT
* * *
68591491 ATAACTTCT
1 GTAAGTTAT
68591500 GTAAGTTAT
1 GTAAGTTAT
68591509 GTAAGTTAT
1 GTAAGTTAT
*
68591518 GTAAGTTGT
1 GTAAGTTAT
*
68591527 GTAAGCTAT
1 GTAAGTTAT
* *
68591536 TTTAGTTAT
1 GTAAGTTAT
68591545 GTAAGCTT-T
1 GTAAG-TTAT
68591554 GT-A-TTAT
1 GTAAGTTAT
68591561 GTAAGTTAT
1 GTAAGTTAT
* *
68591570 GTAGGTTAA
1 GTAAGTTAT
*
68591579 GTAAGTTGT
1 GTAAGTTAT
*
68591588 GTAAATTAT
1 GTAAGTTAT
68591597 GTAAGTT
1 GTAAGTT
68591604 CTTGTACATA
Statistics
Matches: 181, Mismatches: 43, Indels: 36
0.70 0.17 0.14
Matches are distributed among these distances:
6 2 0.01
7 20 0.11
8 17 0.09
9 130 0.72
10 10 0.06
11 2 0.01
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:68591806 original size:53 final size:53
Alignment explanation
Indices: 68591748--68591883 Score: 193
Period size: 53 Copynumber: 2.6 Consensus size: 53
68591738 TTTATAGCGG
68591748 GTAATGTATTCAAGTAACATATTTAAGTAAAAAATTTAACCAAATTTTAGTAA
1 GTAATGTATTCAAGTAACATATTTAAGTAAAAAATTTAACCAAATTTTAGTAA
* * * *
68591801 TTAATGTA-ACTGAGTAACATATTTAAGTAAAAAATTTAACGAAATTTTAGTAA
1 GTAATGTATTC-AAGTAACATATTTAAGTAAAAAATTTAACCAAATTTTAGTAA
* **
68591854 GTAATGTATTTAAGTAATTTATTTAAGTAA
1 GTAATGTATTCAAGTAACATATTTAAGTAA
68591884 TATATTCAAG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
52 1 0.01
53 70 0.99
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (53 bp):
GTAATGTATTCAAGTAACATATTTAAGTAAAAAATTTAACCAAATTTTAGTAA
Found at i:68591869 original size:13 final size:13
Alignment explanation
Indices: 68591851--68591902 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
68591841 GAAATTTTAG
*
68591851 TAAGTAATGTATT
1 TAAGTAATATATT
*
68591864 TAAGTAATTTATT
1 TAAGTAATATATT
68591877 TAAGTAATATATT
1 TAAGTAATATATT
*
68591890 CAAGTAATATATT
1 TAAGTAATATATT
68591903 AAGAGTAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.46
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:68592039 original size:52 final size:52
Alignment explanation
Indices: 68591983--68592138 Score: 179
Period size: 52 Copynumber: 3.1 Consensus size: 52
68591973 TATATATTTA
68591983 AGTAATGTAATATATAAATTTTGAAAAATTATATTCGAACAATATATGTATT
1 AGTAATGTAATATATAAATTTTGAAAAATTATATTCGAACAATATATGTATT
* *
68592035 AGTAATAAGTTAA-AT-TAAA--TTGTAAAA--ATATT--AACATATATAT-T-TA
1 AGTAAT--G-TAATATATAAATTTTGAAAAATTATATTCGAACA-ATATATGTATT
*
68592081 AGTAATGTAATATATAAATTTTAAAAAATTATATTCGAACAATATATGTATT
1 AGTAATGTAATATATAAATTTTGAAAAATTATATTCGAACAATATATGTATT
68592133 AGTAAT
1 AGTAAT
68592139 AAGTTAAATT
Statistics
Matches: 85, Mismatches: 5, Indels: 28
0.72 0.04 0.24
Matches are distributed among these distances:
43 3 0.04
44 3 0.04
45 4 0.05
46 7 0.08
47 11 0.13
48 6 0.07
49 10 0.12
50 6 0.07
51 12 0.14
52 13 0.15
53 4 0.05
54 3 0.04
55 3 0.04
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.40
Consensus pattern (52 bp):
AGTAATGTAATATATAAATTTTGAAAAATTATATTCGAACAATATATGTATT
Found at i:68592041 original size:98 final size:97
Alignment explanation
Indices: 68591954--68592175 Score: 336
Period size: 98 Copynumber: 2.2 Consensus size: 97
68591944 TTGTAAGACA
*
68591954 TCTAAAATATACTTAAAAATATATATTTAAGTAATGTAATATATAAATTTTGAAAAATTATATTC
1 TCTAAAA-ATA-TT-AAAATATATATTTAAGTAATGTAATATATAAATTTTAAAAAATTATATTC
*
68592019 GAACAATATATGTATTAGTAATAAGTTAAATTAAAT
63 GAACAATATATGTATTAGTAAT-AGTTAAATGAAAT
* *
68592055 TGTAAAAATATTAACATATATATTTAAGTAATGTAATATATAAATTTTAAAAAATTATATTCGAA
1 TCTAAAAATATTAAAATATATATTTAAGTAATGTAATATATAAATTTTAAAAAATTATATTCGAA
*
68592120 CAATATATGTATTAGTAATAAGTTAAATTAAAT
66 CAATATATGTATTAGTAAT-AGTTAAATGAAAT
* *
68592153 TGTAAAAATATTAACATATATAT
1 TCTAAAAATATTAAAATATATAT
68592176 ATTTTTTAAT
Statistics
Matches: 118, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
98 107 0.91
99 2 0.02
100 3 0.03
101 6 0.05
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.40
Consensus pattern (97 bp):
TCTAAAAATATTAAAATATATATTTAAGTAATGTAATATATAAATTTTAAAAAATTATATTCGAA
CAATATATGTATTAGTAATAGTTAAATGAAAT
Found at i:68592075 original size:46 final size:46
Alignment explanation
Indices: 68592024--68592178 Score: 165
Period size: 46 Copynumber: 3.2 Consensus size: 46
68592014 TATTCGAACA
*
68592024 ATATATGTATTAGTAATAAGTTAAATTAAATTGTAAAAATATTAAC
1 ATATATATATTAGTAATAAGTTAAATTAAATTGTAAAAATATTAAC
*
68592070 ATATATAT-TTAAGTAAT--G-TAATATATAAATTTTAAAAAATTATATTCGAAC
1 ATATATATATT-AGTAATAAGTTAA-AT-TAAATTGT--AAAA--ATATT--AAC
*
68592121 AATATATGTATTAGTAATAAGTTAAATTAAATTGTAAAAATATTAAC
1 -ATATATATATTAGTAATAAGTTAAATTAAATTGTAAAAATATTAAC
68592168 ATATATATATT
1 ATATATATATT
68592179 TTTTAATATT
Statistics
Matches: 90, Mismatches: 5, Indels: 28
0.73 0.04 0.23
Matches are distributed among these distances:
43 3 0.03
44 3 0.03
45 9 0.10
46 23 0.26
47 7 0.08
49 10 0.11
51 7 0.08
52 13 0.14
53 9 0.10
54 3 0.03
55 3 0.03
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.41
Consensus pattern (46 bp):
ATATATATATTAGTAATAAGTTAAATTAAATTGTAAAAATATTAAC
Found at i:68592160 original size:52 final size:53
Alignment explanation
Indices: 68591997--68592165 Score: 189
Period size: 53 Copynumber: 3.3 Consensus size: 53
68591987 ATGTAATATA
* *
68591997 TAAATTTTGAAAAATTATATTCGAACAATATATGTATTAGTAATAAGTTAAAT
1 TAAATTGTAAAAAATTATATTCGAACAATATATGTATTAGTAATAAGTTAAAT
*
68592050 TAAATTGT--AAAA--ATATT--AACATATATAT-T-TAAGTAAT--G-TAATAT
1 TAAATTGTAAAAAATTATATTCGAACA-ATATATGTATTAGTAATAAGTTAA-AT
*
68592094 ATAAATTTTAAAAAATTATATTCGAACAATATATGTATTAGTAATAAGTTAAAT
1 -TAAATTGTAAAAAATTATATTCGAACAATATATGTATTAGTAATAAGTTAAAT
68592148 TAAATTGTAAAAATATTA
1 TAAATTGTAAAAA-ATTA
68592166 ACATATATAT
Statistics
Matches: 96, Mismatches: 5, Indels: 29
0.74 0.04 0.22
Matches are distributed among these distances:
43 3 0.03
44 3 0.03
45 7 0.07
46 7 0.07
47 9 0.09
48 6 0.06
49 10 0.10
50 6 0.06
51 9 0.09
52 7 0.07
53 19 0.20
54 7 0.07
55 3 0.03
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.40
Consensus pattern (53 bp):
TAAATTGTAAAAAATTATATTCGAACAATATATGTATTAGTAATAAGTTAAAT
Found at i:68592606 original size:7 final size:7
Alignment explanation
Indices: 68592581--68592645 Score: 78
Period size: 7 Copynumber: 9.3 Consensus size: 7
68592571 CACTTCATTC
68592581 AACAGAA
1 AACAGAA
*
68592588 AATAGCAA
1 AACAG-AA
68592596 AACAGAA
1 AACAGAA
*
68592603 AACAAAA
1 AACAGAA
*
68592610 AATAGAA
1 AACAGAA
68592617 AACAGAA
1 AACAGAA
68592624 AACAGAA
1 AACAGAA
*
68592631 AA-AAAA
1 AACAGAA
68592637 AACAGAA
1 AACAGAA
68592644 AA
1 AA
68592646 TAAAGAAACA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
6 5 0.10
7 37 0.77
8 6 0.12
ACGTcount: A:0.75, C:0.11, G:0.11, T:0.03
Consensus pattern (7 bp):
AACAGAA
Found at i:68592610 original size:21 final size:21
Alignment explanation
Indices: 68592581--68592645 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
68592571 CACTTCATTC
68592581 AACAGAAAATAGCAAAACAGAA
1 AACAGAAAATAG-AAAACAGAA
*
68592603 AACAAAAAATAGAAAACAGAA
1 AACAGAAAATAGAAAACAGAA
*
68592624 AACAGAAAA-AAAAAACAGAA
1 AACAGAAAATAGAAAACAGAA
68592644 AA
1 AA
68592646 TAAAGAAACA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 12 0.30
21 17 0.43
22 11 0.28
ACGTcount: A:0.75, C:0.11, G:0.11, T:0.03
Consensus pattern (21 bp):
AACAGAAAATAGAAAACAGAA
Found at i:68592616 original size:14 final size:14
Alignment explanation
Indices: 68592594--68592660 Score: 82
Period size: 14 Copynumber: 4.8 Consensus size: 14
68592584 AGAAAATAGC
68592594 AAAACAGAAAACAA
1 AAAACAGAAAACAA
* *
68592608 AAAATAGAAAACAG
1 AAAACAGAAAACAA
68592622 AAAACAGAAAA-AA
1 AAAACAGAAAACAA
*
68592635 AAAACAGAAAATAA
1 AAAACAGAAAACAA
*
68592649 AGAAACATAAAA
1 A-AAACAGAAAA
68592661 ATGGTACAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
13 12 0.26
14 25 0.54
15 9 0.20
ACGTcount: A:0.78, C:0.09, G:0.09, T:0.04
Consensus pattern (14 bp):
AAAACAGAAAACAA
Found at i:68592654 original size:28 final size:27
Alignment explanation
Indices: 68592581--68592661 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 27
68592571 CACTTCATTC
*
68592581 AACAGAAAATAGCAAAACAGAAAACAAAA
1 AACAGAAAATA-AAAAACAGAAAA-AAAA
* * *
68592610 AATAGAAAACAGAAAACAGAAAAAAAA
1 AACAGAAAATAAAAAACAGAAAAAAAA
*
68592637 AACAGAAAATAAAGAAACATAAAAA
1 AACAGAAAATAAA-AAACAGAAAAA
68592662 TGGTACAGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 14 0.32
28 21 0.48
29 9 0.20
ACGTcount: A:0.75, C:0.10, G:0.10, T:0.05
Consensus pattern (27 bp):
AACAGAAAATAAAAAACAGAAAAAAAA
Found at i:68592691 original size:18 final size:19
Alignment explanation
Indices: 68592649--68592692 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
68592639 CAGAAAATAA
*
68592649 AGAAACATAAAAATGGTAC
1 AGAAACATAAAAATGCTAC
* *
68592668 AGAAACAT-AACATGCTAG
1 AGAAACATAAAAATGCTAC
68592686 AGAAACA
1 AGAAACA
68592693 GAAATTTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.57, C:0.14, G:0.16, T:0.14
Consensus pattern (19 bp):
AGAAACATAAAAATGCTAC
Found at i:68593461 original size:10 final size:10
Alignment explanation
Indices: 68593446--68593470 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
68593436 TTCGACATGG
68593446 TTTTGAACAA
1 TTTTGAACAA
68593456 TTTTGAACAA
1 TTTTGAACAA
68593466 TTTTG
1 TTTTG
68593471 CAATTTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.48
Consensus pattern (10 bp):
TTTTGAACAA
Found at i:68594310 original size:199 final size:198
Alignment explanation
Indices: 68593969--68594381 Score: 603
Period size: 199 Copynumber: 2.1 Consensus size: 198
68593959 TAATTAACCC
** *
68593969 ATTTGCGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTTGTTTCCCGATCAGT
1 ATTTGCGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTCATTCCCCGATCAGT
* ** * * * * *
68594034 TAACTCTAAGTCATTGCATTTTAGAGAAAACGGCGTCGTCTCCATAAAAATTAAAACATTTTTGC
66 AAACTAAAACTCATGGCATTTTAGACAAAACGGCATCGTCTCCATAAAAATTAAAACAATTTTGC
* *
68594099 GGCGTTTACTAAAAGCGCCACTAAAAAGTAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTC
131 GGCGTGTACTAAAAACGCCACTAAAAA-TAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTC
68594164 TGT-A
195 T-TAA
* * *
68594168 CTTTGCGGCGTTTATATACTAGCGCCACTAGTAATATGATCAAACGCTGTCATTCCCCGATTAGT
1 ATTTGCGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTCATTCCCCGATCAGT
* *
68594233 AAACTAAAACTCATGGCGTTTTAGACAAAACGGCATCGTCTCCATAAAAATTAAAATAATTTTGC
66 AAACTAAAACTCATGGCATTTTAGACAAAACGGCATCGTCTCCATAAAAATTAAAACAATTTTGC
* * *
68594298 GGCGTGTACTAAAAACGCCACTAAAGATAAATAAGAAAACGGAGCCGTTTTCGTAAACAATTTCT
131 GGCGTGTACTAAAAACGCCACTAAAAATAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTCT
68594363 TAA
196 TAA
*
68594366 AATTGCGGCGTTTATA
1 ATTTGCGGCGTTTATA
68594382 CATAAACGCC
Statistics
Matches: 190, Mismatches: 23, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
197 1 0.01
198 51 0.27
199 138 0.73
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (198 bp):
ATTTGCGGCGTTTATATACCAGCGCCACTAGTAATATGATCAAACGCTGTCATTCCCCGATCAGT
AAACTAAAACTCATGGCATTTTAGACAAAACGGCATCGTCTCCATAAAAATTAAAACAATTTTGC
GGCGTGTACTAAAAACGCCACTAAAAATAAATAAGAAAACGAAGCCGTTTTCCTAAACAATTTCT
TAA
Found at i:68594857 original size:47 final size:47
Alignment explanation
Indices: 68594769--68594860 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 47
68594759 GTTAATTTCG
* **
68594769 GTAATATTTAAAAAAATTAGATAAAATTATCAATCTCAGTTTTTTAA
1 GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTTAA
* * * *
68594816 GTAATATTTATAAAAATTAGGTAAAAATAAAAATTTTAGTTTTTT
1 GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTT
68594861 TATTTCTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (47 bp):
GTAATATTTAAAAAAATTAGATAAAAATAAAAATCTCAGTTTTTTAA
Found at i:68594876 original size:18 final size:19
Alignment explanation
Indices: 68594848--68594896 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
68594838 AAAAATAAAA
68594848 ATTTTAGTTTTTTTA-TTTC
1 ATTTTA-TTTTTTTATTTTC
*
68594867 TTTTTA-TTTTTTATTTTC
1 ATTTTATTTTTTTATTTTC
68594885 ATTTTATTTTTT
1 ATTTTATTTTTT
68594897 GTAATTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 7 0.27
18 9 0.35
19 10 0.38
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (19 bp):
ATTTTATTTTTTTATTTTC
Found at i:68594878 original size:17 final size:18
Alignment explanation
Indices: 68594856--68594896 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
68594846 AAATTTTAGT
*
68594856 TTTTTTA-TTTCTTTTTA
1 TTTTTTATTTTCATTTTA
68594873 TTTTTTATTTTCATTTTA
1 TTTTTTATTTTCATTTTA
68594891 TTTTTT
1 TTTTTT
68594897 GTAATTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTATTTTCATTTTA
Found at i:68594962 original size:16 final size:14
Alignment explanation
Indices: 68594933--68594959 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
68594923 TTTACAATTC
68594933 CAAATTATTATATT
1 CAAATTATTATATT
68594947 CAAATTATTATAT
1 CAAATTATTATAT
68594960 ATTGCATATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
CAAATTATTATATT
Found at i:68595150 original size:95 final size:96
Alignment explanation
Indices: 68595030--68595217 Score: 240
Period size: 95 Copynumber: 2.0 Consensus size: 96
68595020 TATAAAGAAC
* * * * *
68595030 TTATTTAATATGTTAATAAATAAATACTAATTAATCCAAATCTT-AATCCCTAACCCGA-CTCCA
1 TTATTTAATATATAAATAAATAAATACTAATTAATCCAAACCTTAAAT-CATAACCCAATCT-CA
68595093 AACCCATAA-CCCTAACCCCTAACCCCTAAACT
64 AACCCATAACCCCTAACCCCTAACCCCTAAACT
* *
68595125 TTATTTAATATATAAAATAAA-AAATACTAATTAATCTAAACCTTAAATCATAACCCAATCTCTA
1 TTATTTAATATAT-AAATAAATAAATACTAATTAATCCAAACCTTAAATCATAACCCAATCTCAA
* *
68595189 ACCCCTAACCCCTAACCCTTAACCCCTAA
65 ACCCATAACCCCTAACCCCTAACCCCTAA
68595218 CCCTTAACCC
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
95 50 0.62
96 30 0.38
ACGTcount: A:0.42, C:0.28, G:0.01, T:0.29
Consensus pattern (96 bp):
TTATTTAATATATAAATAAATAAATACTAATTAATCCAAACCTTAAATCATAACCCAATCTCAAA
CCCATAACCCCTAACCCCTAACCCCTAAACT
Found at i:68595198 original size:7 final size:7
Alignment explanation
Indices: 68595186--68595280 Score: 84
Period size: 7 Copynumber: 13.6 Consensus size: 7
68595176 AACCCAATCT
68595186 CTAACCC
1 CTAACCC
68595193 CTAACCC
1 CTAACCC
68595200 CTAACCC
1 CTAACCC
*
68595207 TTAACCC
1 CTAACCC
68595214 CTAACCC
1 CTAACCC
*
68595221 TTAACCC
1 CTAACCC
* *
68595228 TTAACCT
1 CTAACCC
*
68595235 TTAA-CC
1 CTAACCC
68595241 CTAAACCC
1 CT-AACCC
* *
68595249 TTAGCCC
1 CTAACCC
* * *
68595256 ATGACCT
1 CTAACCC
68595263 CTAACCC
1 CTAACCC
68595270 CTAACCC
1 CTAACCC
68595277 CTAA
1 CTAA
68595281 AACTTATTTA
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
6 2 0.03
7 66 0.93
8 3 0.04
ACGTcount: A:0.29, C:0.46, G:0.02, T:0.22
Consensus pattern (7 bp):
CTAACCC
Found at i:68595205 original size:14 final size:14
Alignment explanation
Indices: 68595186--68595276 Score: 96
Period size: 14 Copynumber: 6.5 Consensus size: 14
68595176 AACCCAATCT
*
68595186 CTAACCCCTAACCC
1 CTAACCCTTAACCC
68595200 CTAACCCTTAACCC
1 CTAACCCTTAACCC
68595214 CTAACCCTTAACCC
1 CTAACCCTTAACCC
* *
68595228 TTAACCTTTAA-CC
1 CTAACCCTTAACCC
*
68595241 CTAAACCCTTAGCCC
1 CT-AACCCTTAACCC
* *
68595256 ATGA-CCTCTAACCC
1 CTAACCCT-TAACCC
68595270 CTAACCC
1 CTAACCC
68595277 CTAAAACTTA
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
13 6 0.10
14 51 0.82
15 5 0.08
ACGTcount: A:0.29, C:0.47, G:0.02, T:0.22
Consensus pattern (14 bp):
CTAACCCTTAACCC
Found at i:68595213 original size:21 final size:21
Alignment explanation
Indices: 68595187--68595280 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
68595177 ACCCAATCTC
68595187 TAACCCCTAACCCCTAACCCT
1 TAACCCCTAACCCCTAACCCT
*
68595208 TAACCCCTAACCCTTAACCCT
1 TAACCCCTAACCCCTAACCCT
**
68595229 TAACCTTTAA-CCCTAAACCCT
1 TAACCCCTAACCCCT-AACCCT
* * * * *
68595250 TAGCCCATGACCTCTAACCCC
1 TAACCCCTAACCCCTAACCCT
68595271 TAACCCCTAA
1 TAACCCCTAA
68595281 AACTTATTTA
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
20 3 0.05
21 52 0.90
22 3 0.05
ACGTcount: A:0.30, C:0.46, G:0.02, T:0.22
Consensus pattern (21 bp):
TAACCCCTAACCCCTAACCCT
Found at i:68595396 original size:12 final size:12
Alignment explanation
Indices: 68595379--68595417 Score: 60
Period size: 12 Copynumber: 3.1 Consensus size: 12
68595369 CTCTTAACAT
68595379 CTAACCCCTAAC
1 CTAACCCCTAAC
68595391 CTAACCCCTAACC
1 CTAACCCCTAA-C
68595404 CATAACCCCTAAC
1 C-TAACCCCTAAC
68595417 C
1 C
68595418 CCTAATCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 11 0.44
13 4 0.16
14 10 0.40
ACGTcount: A:0.33, C:0.51, G:0.00, T:0.15
Consensus pattern (12 bp):
CTAACCCCTAAC
Done.