Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 223 of 313
Found at i:68595416 original size:21 final size:21
Alignment explanation
Indices: 68595390--68595429 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
68595380 TAACCCCTAA
68595390 CCTAACCCCTAACCCATAACC
1 CCTAACCCCTAACCCATAACC
*
68595411 CCTAACCCCTAATCCATAA
1 CCTAACCCCTAACCCATAA
68595430 ACCTTAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.17
Consensus pattern (21 bp):
CCTAACCCCTAACCCATAACC
Found at i:68595418 original size:14 final size:13
Alignment explanation
Indices: 68595379--68595418 Score: 64
Period size: 14 Copynumber: 3.1 Consensus size: 13
68595369 CTCTTAACAT
68595379 CTAACCCCTAA-C
1 CTAACCCCTAACC
68595391 CTAACCCCTAACC
1 CTAACCCCTAACC
68595404 CATAACCCCTAACC
1 C-TAACCCCTAACC
68595418 C
1 C
68595419 CTAATCCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 11 0.42
13 2 0.08
14 13 0.50
ACGTcount: A:0.33, C:0.53, G:0.00, T:0.15
Consensus pattern (13 bp):
CTAACCCCTAACC
Found at i:68595937 original size:114 final size:113
Alignment explanation
Indices: 68595811--68596028 Score: 246
Period size: 114 Copynumber: 1.9 Consensus size: 113
68595801 GCTTTACCGA
* * *
68595811 AAACGCCGCTAA-TACTATTC-TTTAGCAGCGTTTTACCATAAACGCCACTAAT-TCTAATATAC
1 AAACGCCACTAATTA-TATTCTTTTA-CAGCGTTTTACAAAAAACGCCACTAATAT-TAATATAC
*
68595873 ATCAAAACCAAACACTGCGTTTTGGTTAAGGCAT-TTTGCGGCGCTTCCAAAT
63 ATCAAAACCAAACACTGCGTTTTCGTTAA-G-ATATTTGCGGCGCTTCCAAAT
* * ** * *
68595925 AAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAAAAACGCCACTAATATTAATCTACCTC
1 AAACGCCACTAATTATATTCTTTTACAGCGTTTTACAAAAAACGCCACTAATATTAATATACATC
* **
68595990 AAGACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCG
66 AAAACCAAACACTGCGTTTTCGTTAAGATATTTGCGGCG
68596029 TTTTATCGTA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
112 2 0.02
113 10 0.11
114 68 0.78
115 7 0.08
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (113 bp):
AAACGCCACTAATTATATTCTTTTACAGCGTTTTACAAAAAACGCCACTAATATTAATATACATC
AAAACCAAACACTGCGTTTTCGTTAAGATATTTGCGGCGCTTCCAAAT
Found at i:68596145 original size:75 final size:74
Alignment explanation
Indices: 68595964--68596201 Score: 277
Period size: 75 Copynumber: 3.2 Consensus size: 74
68595954 GTTTTTTAAA
* * * *
68595964 AAACGCCACTAATAT-TAATCTACCTCAAGACCAAACGGTGCGTTTTCGTTAAGATA-TTTGCGG
1 AAACGCCACTAAT-TCTAATATACCTCAA-ACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGG
** * ***
68596027 CGTTTTATCGT
64 CGCATAAAAAT
68596038 AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
1 AAACGCCACTAATTCTAATATACCTC-AAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
68596103 GCATAAAAAT
65 GCATAAAAAT
*
68596113 AAACGCCAC-AATGTCTAATATACAATTC-AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
1 AAACGCCACTAAT-TCTAATATAC--CTCAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
**
68596176 GCGCATCCAAAT
63 GCGCATAAAAAT
68596188 AAACGCCACTAATT
1 AAACGCCACTAATT
68596202 ATGTTCTTTT
Statistics
Matches: 144, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
73 1 0.01
74 50 0.35
75 88 0.61
76 3 0.02
77 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (74 bp):
AAACGCCACTAATTCTAATATACCTCAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCG
CATAAAAAT
Found at i:68596315 original size:263 final size:263
Alignment explanation
Indices: 68595848--68596576 Score: 1259
Period size: 263 Copynumber: 2.8 Consensus size: 263
68595838 GCGTTTTACC
* *
68595848 ATAAACGCCACTAAT-TCTAATATAC-A-TCAAAACCAAACACTGCGTTTTGGTTAAGGCATTTT
1 ATAAACGCCAC-AATGTCTAATATACAATTC--AACCAAACGCTGCGTTTTGGTTAAGGTATTTT
*
68595910 GCGGCGCTTCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAAAAACGCCACTA
63 GCGGCGCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAAAAACGCCACTA
68595975 ATATTAATCTACCTCAAGACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCGTTTTATCGTAA
128 ATATTAATCTACCTCAAGACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCGTTTTATCGTAA
68596040 ACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGC
193 ACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGC
68596105 ATAAAA
258 ATAAAA
68596111 ATAAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
1 ATAAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
68596176 GCGCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAAAAACGCCACTAATA
66 GCGCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAAAAACGCCACTAATA
* *
68596241 TTAATCTACCTCAAGACCAAATGGTGCGTTTCCGTTAAGATATTTGCGGCGTTTTATCGTAAACG
131 TTAATCTACCTCAAGACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCGTTTTATCGTAAACG
68596306 CCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCATA
196 CCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCATA
68596371 AAA
261 AAA
68596374 ATAAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
1 ATAAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
** *
68596439 GCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGTGTTTTTCT-AAAAACGCCACTAAT
66 GCGCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTT-TAAAAAACGCCACTAAT
* * * * * *
68596503 ACTAATCTACCTCAAGACGAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTTACCGAAAAC
130 ATTAATCTACCTCAAGACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCGTTTTATCGTAAAC
*
68596568 GCCGCTAAT
195 GCCACTAAT
68596577 ACTATTCTTT
Statistics
Matches: 445, Mismatches: 17, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
262 3 0.01
263 438 0.98
264 2 0.00
265 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.31
Consensus pattern (263 bp):
ATAAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
GCGCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAAAAACGCCACTAATA
TTAATCTACCTCAAGACCAAACGGTGCGTTTTCGTTAAGATATTTGCGGCGTTTTATCGTAAACG
CCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGCATA
AAA
Found at i:68596342 original size:188 final size:188
Alignment explanation
Indices: 68596038--68596384 Score: 477
Period size: 188 Copynumber: 1.8 Consensus size: 188
68596028 GTTTTATCGT
** *
68596038 AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
1 AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTCCGTTAAGATATTTTGCGGC
*
68596103 GCATAAAAATAAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGT
66 GCATAAAAATAAACGCCACAATGTCTAATATAC-ACTCAACCAAACGCTGCGTTTTGGTTAAGGT
**
68596168 ATTTTGCGGCGCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAA
130 ATTTTGCGGCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAA
* * * *
68596227 AAACGCCACTAATAT-TAATCTACCTCAAGACCAAATGGTGCGTTTCCGTTAAGATA-TTTGCGG
1 AAACGCCACTAAT-TCTAATATACCTCAAAACCAAACGCTGCGTTTCCGTTAAGATATTTTGCGG
** * ***
68596290 CGTTTTATCGTAAACGCCACTAAT-TCTAATATAC-CTCAAAACCAAACGCTGCGTTTTGGTTAA
65 CGCATAAAAATAAACGCCAC-AATGTCTAATATACACTC--AACCAAACGCTGCGTTTTGGTTAA
68596353 GGTATTTTGCGGCGCATAAAAATAAACGCCAC
127 GGTATTTTGCGGCGCATAAAAATAAACGCCAC
68596385 AATGTCTAAT
Statistics
Matches: 138, Mismatches: 16, Indels: 9
0.85 0.10 0.06
Matches are distributed among these distances:
186 2 0.01
188 85 0.62
189 50 0.36
190 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (188 bp):
AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTCCGTTAAGATATTTTGCGGC
GCATAAAAATAAACGCCACAATGTCTAATATACACTCAACCAAACGCTGCGTTTTGGTTAAGGTA
TTTTGCGGCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTAAA
Found at i:68596408 original size:75 final size:74
Alignment explanation
Indices: 68596227--68596464 Score: 277
Period size: 75 Copynumber: 3.2 Consensus size: 74
68596217 GTTTTTTAAA
* * * ** *
68596227 AAACGCCACTAATAT-TAATCTACCTCAAGACCAAATGGTGCGTTTCCGTTAAGATA-TTTGCGG
1 AAACGCCACTAAT-TCTAATATACCTCAA-ACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGG
** * ***
68596290 CGTTTTATCGT
64 CGCATAAAAAT
68596301 AAACGCCACTAATTCTAATATACCTCAAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
1 AAACGCCACTAATTCTAATATACCTC-AAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
68596366 GCATAAAAAT
65 GCATAAAAAT
*
68596376 AAACGCCAC-AATGTCTAATATACAATTC-AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
1 AAACGCCACTAAT-TCTAATATAC--CTCAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
68596439 GCGCATAAAAAT
63 GCGCATAAAAAT
68596451 AAACGCCACTAATT
1 AAACGCCACTAATT
68596465 ATGTTCTTTT
Statistics
Matches: 144, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
73 1 0.01
74 48 0.33
75 90 0.62
76 3 0.02
77 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29
Consensus pattern (74 bp):
AAACGCCACTAATTCTAATATACCTCAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCG
CATAAAAAT
Found at i:68596548 original size:114 final size:114
Alignment explanation
Indices: 68596376--68596954 Score: 484
Period size: 114 Copynumber: 5.1 Consensus size: 114
68596366 GCATAAAAAT
* *
68596376 AAACGCCAC-AATGTCTAATATACAATTC-AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
1 AAACGCCACTAAT-ACTAATATAC-ACTCAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
* *
68596439 GCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGTGTTTTTCTAA
64 GCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTATAA
* * * ** *
68596490 AAACGCCACTAATACTAATCTAC-CTCAAGACGAAACGGTGCGTTTTCATTAAGATA-TTTGCGG
1 AAACGCCACTAATACTAATATACACTCAA-ACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGG
* *** * * *
68596553 CGCTTTACCGA-AAACGCCGCTAA-TACTATTCTTTTGCGGCG-TTTTATAGA
65 CGC-ATAAAAATAAACGCCACTAATTA-TGTTCTTTTACGGCGTTTTTATA-A
* *
68596603 AAACGCCAC-AATGTCTAATATACAATTC-AACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
1 AAACGCCACTAAT-ACTAATATAC-ACTCAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCG
** *
68596666 GCGCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAA
64 GCGCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTATAA
* * ** * ** *
68596717 AAACGCCACTAATATTAATCTAC-CTCAAGATAAAACGGTGCGTTTTCCTTAAGATA-TTTGCGG
1 AAACGCCACTAATACTAATATACACTCAA-ACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGG
* ***** * * **
68596780 CGCTTTTTGTTAAACGCCGCTAA-TACTATTCTTTCGCGGCGTTTTTTATAAA
65 CGCATAAAAATAAACGCCACTAATTA-TGTTCTTTTACGGCG-TTTTTAT-AA
* * * ** * *
68596832 AAACGCCACGAATTCTAATATACAATTGAACC-AACACTGCGTTTTGGTTAAGGTGTTTTGCGGC
1 AAACGCCACTAATACTAATATACACTCAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
* * * * *
68596896 GC-TTACAATAAACGCCACTAATTATGTTCTTTTACAGCGTTTTTTTAG
66 GCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTATAA
68596944 AAACGCCACTA
1 AAACGCCACTA
68596955 GTTCTTCAGG
Statistics
Matches: 362, Mismatches: 81, Indels: 46
0.74 0.17 0.09
Matches are distributed among these distances:
112 28 0.08
113 119 0.33
114 163 0.45
115 50 0.14
116 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (114 bp):
AAACGCCACTAATACTAATATACACTCAAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
GCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTATAA
Found at i:68596606 original size:113 final size:112
Alignment explanation
Indices: 68596451--68596850 Score: 373
Period size: 113 Copynumber: 3.5 Consensus size: 112
68596441 GCATAAAAAT
* * * * *
68596451 AAACGCCACTAATTA-TGTTCTTTTACGGTGTTTTTCTAAAAACGCCACTAATACTAATCTACCT
1 AAACGCCGCTAA-TACTATTCTTTTGCGGCGTTTTTATAAAAACGCCACTAATACTAATCTACCT
*
68596515 CAAGACGAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTTACCGA
65 CAAGACAAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTT-CCGA
* *
68596564 AAACGCCGCTAATACTATTCTTTTGCGGCG-TTTTATAGAAAACGCCAC-AATGTCTAATATACA
1 AAACGCCGCTAATACTATTCTTTTGCGGCGTTTTTATA-AAAACGCCACTAAT-ACTAATCTAC-
* * * ** * * *
68596627 ATTC-A-ACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGCGC-ATCCAAA
63 -CTCAAGACAAAACGGTGCGTTTTCATTAAGATA-TTTGCGGCGCTTTCC-GA
* * * * *
68596677 TAAACGCCACTAATTA-TGTTCTTTTACGGCGTTTTTTTAAAAACGCCACTAATATTAATCTACC
1 -AAACGCCGCTAA-TACTATTCTTTTGCGGCGTTTTTATAAAAACGCCACTAATACTAATCTACC
* * ** *
68596741 TCAAGATAAAACGGTGCGTTTTCCTTAAGATATTTGCGGCGCTTTTTGTT
64 TCAAGACAAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTTCCG-A
* * *
68596791 AAACGCCGCTAATACTATTCTTTCGCGGCGTTTTTTATAAAAAACGCCACGAATTCTAAT
1 AAACGCCGCTAATACTATTCTTTTGCGGCG-TTTTTAT-AAAAACGCCACTAATACTAAT
68596851 ATACAATTGA
Statistics
Matches: 227, Mismatches: 42, Indels: 34
0.75 0.14 0.11
Matches are distributed among these distances:
112 17 0.07
113 99 0.44
114 80 0.35
115 31 0.14
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (112 bp):
AAACGCCGCTAATACTATTCTTTTGCGGCGTTTTTATAAAAACGCCACTAATACTAATCTACCTC
AAGACAAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTTCCGA
Found at i:68596755 original size:227 final size:228
Alignment explanation
Indices: 68596376--68596954 Score: 925
Period size: 227 Copynumber: 2.5 Consensus size: 228
68596366 GCATAAAAAT
68596376 AAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
1 AAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
* * *
68596441 GCATAAAAATAAACGCCACTAATTATGTTCTTTTACGGTGTTTTTCTAAAAACGCCACTAATACT
66 GCATACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAAAACGCCACTAATACT
*
68596506 AATCTACCTCAAGACGAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTTACCG-AAAACGC
131 AATCTACCTCAAGACAAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTT-CCGTAAAACGC
* *
68596570 CGCTAATACTATTCTTTTGCGGCG-TTTTATAGA
195 CGCTAATACTATTCTTTCGCGGCGTTTTTATAAA
68596603 AAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
1 AAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
* *
68596668 GCATCCAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAAAACGCCACTAATATT
66 GCATACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAAAACGCCACTAATACT
* * ** *
68596733 AATCTACCTCAAGATAAAACGGTGCGTTTTCCTTAAGATATTTGCGGCGCTTTTTGTTAAACGCC
131 AATCTACCTCAAGACAAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTTCCGTAAAACGCC
68596798 GCTAATACTATTCTTTCGCGGCGTTTTTTATAAA
196 GCTAATACTATTCTTTCGCGGCG-TTTTTATAAA
* * *
68596832 AAACGCCACGAAT-TCTAATATACAATTGAACC-AACACTGCGTTTTGGTTAAGGTGTTTTGCGG
1 AAACGCCAC-AATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGG
* * *
68596895 CGCTTAC-AATAAACGCCACTAATTATGTTCTTTTACAGCGTTTTTTTAGAAACGCCACTA
65 CGCATACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAAAACGCCACTA
68596955 GTTCTTCAGG
Statistics
Matches: 328, Mismatches: 20, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
226 1 0.00
227 255 0.78
228 34 0.10
229 35 0.11
230 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (228 bp):
AAACGCCACAATGTCTAATATACAATTCAACCAAACGCTGCGTTTTGGTTAAGGTATTTTGCGGC
GCATACAAATAAACGCCACTAATTATGTTCTTTTACGGCGTTTTTTTAAAAACGCCACTAATACT
AATCTACCTCAAGACAAAACGGTGCGTTTTCATTAAGATATTTGCGGCGCTTTCCGTAAAACGCC
GCTAATACTATTCTTTCGCGGCGTTTTTATAAA
Found at i:68598985 original size:41 final size:41
Alignment explanation
Indices: 68598940--68599178 Score: 182
Period size: 41 Copynumber: 5.8 Consensus size: 41
68598930 AAAGCCAGAG
* *
68598940 CATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACTAA
1 CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCAA
** * * * *
68598981 CATTAGCGATGCTTAGAAAAAAACGCCGCTAAAG--GCCAGA
1 CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCA-A
* * * * *
68599021 GAATTAGTGGCGCTCAGATAAAAACGCCACTAAAAATACGAG
1 -CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCAA
* * * *
68599063 CATTAGCAGCGCTTAGAGAAAAACGCCACTAAAG--GCCAGA
1 CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCA-A
* * * *
68599103 GCATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGAT-CGGAC
1 -CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATAC-CAA
* * *
68599145 CATTAGCGGCGCTAAAATAAAAACGCCGCTAAAG
1 CATTAGCGGCGCTCAGATAAAAACGCCACTAAAG
68599179 GTTTAAAAAT
Statistics
Matches: 151, Mismatches: 38, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
39 4 0.03
40 1 0.01
41 142 0.94
42 1 0.01
43 3 0.02
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.16
Consensus pattern (41 bp):
CATTAGCGGCGCTCAGATAAAAACGCCACTAAAGATACCAA
Found at i:68599021 original size:82 final size:82
Alignment explanation
Indices: 68598918--68599179 Score: 368
Period size: 82 Copynumber: 3.2 Consensus size: 82
68598908 ACTTACCTAT
* *
68598918 AAAACGCCGCTAAAAGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACTAACA
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
*
68598983 TTAGCGATGCTTAGAAA
66 TTAGCGACGCTTAGAAA
* * *
68599000 AAAACGCCGCTAAAGGCCAGAGAATTAGTGGCGCTCAGATAAAAACGCCACTAAAAATACGAGCA
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
*
68599065 TTAGC-AGCGCTTAGAGA
66 TTAGCGA-CGCTTAGAAA
* * *
68599082 AAAACGCCACTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGAT-CGGACC
1 AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATAC-GAAC
* *
68599146 ATTAGCGGCGC-TAAAATA
65 ATTAGCGACGCTTAGAA-A
68599164 AAAACGCCGCTAAAGG
1 AAAACGCCGCTAAAGG
68599180 TTTAAAAATC
Statistics
Matches: 160, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
81 5 0.03
82 155 0.97
ACGTcount: A:0.40, C:0.23, G:0.22, T:0.15
Consensus pattern (82 bp):
AAAACGCCGCTAAAGGCCAGAGCATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATACGAACA
TTAGCGACGCTTAGAAA
Found at i:68599786 original size:19 final size:19
Alignment explanation
Indices: 68599764--68599801 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
68599754 AGTGCTAAGT
68599764 GTAACAACTCGATGATTGC
1 GTAACAACTCGATGATTGC
68599783 GTAACAACTCGATGATTGC
1 GTAACAACTCGATGATTGC
68599802 ATTTACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (19 bp):
GTAACAACTCGATGATTGC
Found at i:68604753 original size:15 final size:15
Alignment explanation
Indices: 68604725--68604761 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
68604715 TACTAGTGCC
* *
68604725 CCACCCCCTTCAAGA
1 CCACCACCTCCAAGA
68604740 CCACCACCTCCAAGA
1 CCACCACCTCCAAGA
68604755 CCACCAC
1 CCACCAC
68604762 GAGTTTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.30, C:0.57, G:0.05, T:0.08
Consensus pattern (15 bp):
CCACCACCTCCAAGA
Found at i:68611578 original size:52 final size:52
Alignment explanation
Indices: 68611500--68611606 Score: 214
Period size: 52 Copynumber: 2.1 Consensus size: 52
68611490 CAGCTCGAGG
68611500 AATCATCCCTGTTTGGAAAGAATGATTATTATTATATATAGCATTGGAAAAC
1 AATCATCCCTGTTTGGAAAGAATGATTATTATTATATATAGCATTGGAAAAC
68611552 AATCATCCCTGTTTGGAAAGAATGATTATTATTATATATAGCATTGGAAAAC
1 AATCATCCCTGTTTGGAAAGAATGATTATTATTATATATAGCATTGGAAAAC
68611604 AAT
1 AAT
68611607 AACCCCCGCC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (52 bp):
AATCATCCCTGTTTGGAAAGAATGATTATTATTATATATAGCATTGGAAAAC
Found at i:68613421 original size:341 final size:341
Alignment explanation
Indices: 68612580--68613596 Score: 1962
Period size: 342 Copynumber: 3.0 Consensus size: 341
68612570 TTATATATTA
* *
68612580 AAAACAAAAATTTAGTTTATATATATATGTCAGGGCATTTTTATAAATATTTCAAAACGAAATAT
1 AAAACAAAAATTTAGTTTATATATATATGTTAGGGCATTTTTATAAATATTTCAAAACGAAATAG
68612645 ATTTACTTTAAATCTAATCCCGATTTAGCCTAATTATTTTTATAATTTCACTCGAATTAATTCGA
66 ATTTACTTTAAATCTAATCCCGATTTAGCCTAATTATTTTTATAATTTCACTCGAATTAATTCGA
68612710 CTTAAATTCGTTTTTTCAAAACAAAAAAAAATCTGACCATAATAAATTGGGTGGAATCAAAACCT
131 CTTAAATTCGTTTTTTCAAAACAAAAAAAAATCTGACCATAATAAATTGGGTGGAATCAAAACCT
68612775 ATCGGATTTAAATTTTTTTCGCGAACCCTAAAATAGAAGAGAGTGAAACTAATTCACGATTGCGG
196 ATCGGATTTAAATTTTTTTCGCGAACCCTAAAATAGAAGAGAGTGAAACTAATTCACGATTGCGG
68612840 GTTTATTCTGCTGGTTAATTTCAATCAATTTCTCGGGCAAATTACCAATAAAAGCCCATTTATTT
261 GTTTATTCTGCTGGTTAATTTCAATCAATTTCTCGGGCAAATTACCAATAAAAGCCCATTTATTT
68612905 TCAAAATTTAGTTTTG
326 TCAAAATTTAGTTTTG
68612921 AAAACAAAAATTTAGTTTATATATATATGTTAGGGCATTTTTATAAATATTTCAAAACGAAATAG
1 AAAACAAAAATTTAGTTTATATATATATGTTAGGGCATTTTTATAAATATTTCAAAACGAAATAG
68612986 ATTTACTTTAAATCTAATCCCGATTTAGCCTAATTATTTTTATAATTTCACTCGAATTAATTCGA
66 ATTTACTTTAAATCTAATCCCGATTTAGCCTAATTATTTTTATAATTTCACTCGAATTAATTCGA
68613051 CTTAAATTCGTTTTTTCAAAACAAAAAAAAATCTGACCATAATAAATTGGGTGGAATCAAAACCT
131 CTTAAATTCGTTTTTTCAAAACAAAAAAAAATCTGACCATAATAAATTGGGTGGAATCAAAACCT
*
68613116 ATCGGATTTAAATTTTTTTTCGCGAACCCTAAAATAGAAGAGAGTGAAACTAATTCATGATTGCG
196 ATCGGATTTAAA-TTTTTTTCGCGAACCCTAAAATAGAAGAGAGTGAAACTAATTCACGATTGCG
68613181 GGTTTATTCTGCTGGTTAATTTCAATCAATTTCTCGGGCAAATTACCAATAAAAGCCCATTTATT
260 GGTTTATTCTGCTGGTTAATTTCAATCAATTTCTCGGGCAAATTACCAATAAAAGCCCATTTATT
68613246 TTCAAAATTTAGTTTTG
325 TTCAAAATTTAGTTTTG
68613263 AAAACAAAAATTTAGTTTATATATATATGTTAGGGCATTTTTATAAATATTTCAAAACGAAATAG
1 AAAACAAAAATTTAGTTTATATATATATGTTAGGGCATTTTTATAAATATTTCAAAACGAAATAG
68613328 ATTTACTTTAAATCTAATCCCGATTTAGCCTAATTATTTTTATAATTTCACTCGAATTAATTCGA
66 ATTTACTTTAAATCTAATCCCGATTTAGCCTAATTATTTTTATAATTTCACTCGAATTAATTCGA
* *
68613393 CTTAAATTCATTTTTTCAAAATAAAAAAAAAATCTGACCATAATAAATTGGGTGGAATCAAAACC
131 CTTAAATTCGTTTTTTCAAAA-CAAAAAAAAATCTGACCATAATAAATTGGGTGGAATCAAAACC
68613458 TATCGGATTTAAATTTTTTTCGCGAACCCTAAAATAGAAGAGAGTGAAACTAATTCACGATTGCG
195 TATCGGATTTAAATTTTTTTCGCGAACCCTAAAATAGAAGAGAGTGAAACTAATTCACGATTGCG
*
68613523 GGTTTATTCTGCTGGTTAATTTCAATCAATTTCTCGGGCAAATTACCAATAAAAGCCCCTTTATT
260 GGTTTATTCTGCTGGTTAATTTCAATCAATTTCTCGGGCAAATTACCAATAAAAGCCCATTTATT
68613588 TTCAAAATT
325 TTCAAAATT
68613597 ACCGAAATGG
Statistics
Matches: 667, Mismatches: 7, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
341 205 0.31
342 407 0.61
343 55 0.08
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (341 bp):
AAAACAAAAATTTAGTTTATATATATATGTTAGGGCATTTTTATAAATATTTCAAAACGAAATAG
ATTTACTTTAAATCTAATCCCGATTTAGCCTAATTATTTTTATAATTTCACTCGAATTAATTCGA
CTTAAATTCGTTTTTTCAAAACAAAAAAAAATCTGACCATAATAAATTGGGTGGAATCAAAACCT
ATCGGATTTAAATTTTTTTCGCGAACCCTAAAATAGAAGAGAGTGAAACTAATTCACGATTGCGG
GTTTATTCTGCTGGTTAATTTCAATCAATTTCTCGGGCAAATTACCAATAAAAGCCCATTTATTT
TCAAAATTTAGTTTTG
Found at i:68614310 original size:24 final size:21
Alignment explanation
Indices: 68614263--68614312 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 21
68614253 CTACTAATGT
*
68614263 GTTCACACAACAATTAAAAGG
1 GTTCACACAAAAATTAAAAGG
*
68614284 GTTCACACTAAAACATTAAAGATG
1 GTTCACAC-AAAA-ATTAAA-AGG
68614308 GTTCA
1 GTTCA
68614313 TGAATTCGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
22 3 0.12
23 6 0.25
24 7 0.29
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (21 bp):
GTTCACACAAAAATTAAAAGG
Found at i:68615805 original size:83 final size:83
Alignment explanation
Indices: 68615710--68615873 Score: 294
Period size: 83 Copynumber: 2.0 Consensus size: 83
68615700 GTGTTTAGGG
*
68615710 TTTTAAGAGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTGAATTAATTATAAAATTTT
1 TTTTAAGAGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT-AAATTTT
68615775 AAAAAAATTAGATTAGGAT
65 AAAAAAATTAGATTAGGAT
*
68615794 TTTTAAG-GAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAATTTTA
1 TTTTAAGAGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTA
68615858 AAAAAATTAGATTAGG
66 AAAAAATTAGATTAGG
68615874 GTTTAGTGTT
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
82 24 0.31
83 47 0.60
84 7 0.09
ACGTcount: A:0.45, C:0.02, G:0.17, T:0.36
Consensus pattern (83 bp):
TTTTAAGAGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTA
AAAAAATTAGATTAGGAT
Found at i:68615835 original size:179 final size:186
Alignment explanation
Indices: 68615512--68615940 Score: 568
Period size: 179 Copynumber: 2.3 Consensus size: 186
68615502 GGTTTTAGAT
* * * *
68615512 TTTAAGGTTTTAAGGAAAAATTAAATAAATAAGGGTTTAGGGTTTCTTAATTAAATTAATTATAA
1 TTTAGGGTTTTAAGGAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAA
* *
68615577 ATTTTTAAAAAATAGATTAGGGTTTAGTGTTGATGGTTTTTAAGAAAAAAATCAAATAAATTAGG
66 AATTTTAAAAAATAGATTA-GGATTAG-G-TGA--GTTTTTAAGAAAAAAATCAAATAAATTAGG
* *
68615642 GTTTAGGATTACTTGAGTAAATTAATTATAAATTTTTAAAAATTTAGATTAGGATTTAGTG
126 GTTTAGGATTACTTGAGTAAATTAATTATAAATTTTAAAAAAATTAGATTAGGATTTAGTG
* * *
68615703 TTTAGGGTTTTAAGAGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTGAATTAATTATA
1 TTTAGGGTTTTAAG-GAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATA
*
68615768 AAATTTT-AAAAA-A-ATTA-GATTA-G-GA-TTTTTAAG-GAAAAATCAAATAAATTAGGGTTT
65 AAATTTTAAAAAATAGATTAGGATTAGGTGAGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTT
* * *
68615825 GGGGTTACTTGAGTAAATTAATTATAAATTTTAAAAAAATTAGATTAGGGTTTAGTG
130 AGGATTACTTGAGTAAATTAATTATAAATTTTAAAAAAATTAGATTAGGATTTAGTG
* * * *
68615882 TTTATGGTTTTTAAGTAAAAATTAAATAAATTAGGGTTTAGAGTTACTTAATTAAATTA
1 TTTA-GGGTTTTAAGGAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTA
68615941 TTTGTTAATT
Statistics
Matches: 214, Mismatches: 22, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
179 117 0.55
180 17 0.08
183 2 0.01
185 1 0.00
187 4 0.02
189 4 0.02
190 1 0.00
191 18 0.08
192 50 0.23
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (186 bp):
TTTAGGGTTTTAAGGAAAAATTAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAA
AATTTTAAAAAATAGATTAGGATTAGGTGAGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTA
GGATTACTTGAGTAAATTAATTATAAATTTTAAAAAAATTAGATTAGGATTTAGTG
Found at i:68615957 original size:96 final size:95
Alignment explanation
Indices: 68615498--68615957 Score: 522
Period size: 96 Copynumber: 4.9 Consensus size: 95
68615488 GGTTAGGGTT
* * * *
68615498 TTAGGGTTTTAGAT-TTTAAGG-TTTTAAGGAAAAATTAAATAAATAAGGGTTTAGGGTTTCTTA
1 TTAGGG-TTTAG-TGTTT-AGGTTTTTAAGGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTG
* *
68615561 ATTAAATTAATTATAAATTTTTAAAAAA-TAGA
63 AGTAAATTAATTATAAATTTTAAAAAAATTAGA
* * *
68615593 TTAGGGTTTAGTGTTGATGGTTTTTAAGAAAAAAATCAAATAAATTAGGGTTTAGGATTACTTGA
1 TTAGGGTTTAGTGTTTA-GGTTTTTAAG-GAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGA
* *
68615658 GTAAATTAATTATAAATTTTTAAAAATTTAGA
64 GTAAATTAATTATAAATTTTAAAAAAATTAGA
* *
68615690 TTAGGATTTAGTGTTTAGGGTTTTAAGAGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAG
1 TTAGGGTTTAGTGTTTAGGTTTTTAAG-GAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAG
*
68615755 TGAATTAATTATAAAATTTTAAAAAAATTAG-
65 TAAATTAATTAT-AAATTTTAAAAAAATTAGA
*
68615786 --A----TTAG-G---A--TTTTTAAGGAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGT
1 TTAGGGTTTAGTGTTTAGGTTTTTAAGGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGT
68615839 AAATTAATTATAAATTTTAAAAAAATTAGA
66 AAATTAATTATAAATTTTAAAAAAATTAGA
* * * * *
68615869 TTAGGGTTTAGTGTTTATGGTTTTTAAGTAAAAATTAAATAAATTAGGGTTTAGAGTTACTTAAT
1 TTAGGGTTTAGTGTTTA-GGTTTTTAAGGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAG
* * *
68615934 TAAATTATTTGTTAA-TTTAAAAAA
65 TAAATTAATTATAAATTTTAAAAAA
68615958 GCTTTCACAT
Statistics
Matches: 316, Mismatches: 29, Indels: 40
0.82 0.08 0.10
Matches are distributed among these distances:
82 18 0.06
83 47 0.15
84 7 0.02
85 1 0.00
86 1 0.00
89 5 0.02
90 5 0.02
93 3 0.01
94 10 0.03
95 22 0.07
96 162 0.51
97 35 0.11
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.40
Consensus pattern (95 bp):
TTAGGGTTTAGTGTTTAGGTTTTTAAGGAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGT
AAATTAATTATAAATTTTAAAAAAATTAGA
Found at i:68616208 original size:126 final size:124
Alignment explanation
Indices: 68615967--68616229 Score: 402
Period size: 126 Copynumber: 2.1 Consensus size: 124
68615957 AGCTTTCACA
* * *
68615967 TGGAAGCTCTTTTGCTACAATAGTTCTTGAAAAAATAATTTTGAGAAGATGTTTCTGCAAATAGT
1 TGGACGCTCTTTTGCCACAATAGTTCTTGAAAAAATAATTTTGAGAAGATATTTCTGCAAATAGT
* * * *
68616032 GTCAAAAACGCTTTAAGCAGGATGTATTGTCAGGAAAAATACTGAAAGAAGCTCCCACG
66 GTCAAAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAATACTGAAAGAAGCTCCCACG
*
68616091 TGGACGCTCTTTTGCCACAGTAGTT-TCTGAAAAAATAATTTTGAGAAGATATTTCTGAGCAAAT
1 TGGACGCTCTTTTGCCACAATAGTTCT-TGAAAAAATAATTTTGAGAAGATATTTCT--GCAAAT
* *
68616155 AGTGTCAAAAATGCTTCAAGCAGGATGCAATGTCAGCAAAAGTACTGAAAGAAGCTCCCACG
63 AGTGTCAAAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAATACTGAAAGAAGCTCCCACG
68616217 TGGACGCTCTTTT
1 TGGACGCTCTTTT
68616230 ACGTCAGTAG
Statistics
Matches: 126, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
123 1 0.01
124 50 0.40
126 75 0.60
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (124 bp):
TGGACGCTCTTTTGCCACAATAGTTCTTGAAAAAATAATTTTGAGAAGATATTTCTGCAAATAGT
GTCAAAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAATACTGAAAGAAGCTCCCACG
Found at i:68629219 original size:15 final size:15
Alignment explanation
Indices: 68629201--68629237 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
68629191 AAATAATTAA
*
68629201 TTTTAATATTTATAT
1 TTTTAATATTTAAAT
*
68629216 TTTTAAAATTTAAAT
1 TTTTAATATTTAAAT
68629231 TTTTAAT
1 TTTTAAT
68629238 CTTGATTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTAATATTTAAAT
Found at i:68632578 original size:40 final size:40
Alignment explanation
Indices: 68632523--68632609 Score: 156
Period size: 40 Copynumber: 2.2 Consensus size: 40
68632513 CTAAGTGCCT
68632523 AACCAATATGCCATCATTTGACACCACAAATCATACACTA
1 AACCAATATGCCATCATTTGACACCACAAATCATACACTA
*
68632563 AACCAATATGCCATCATTTGGCACCACAAATCATACACTA
1 AACCAATATGCCATCATTTGACACCACAAATCATACACTA
*
68632603 AATCAAT
1 AACCAAT
68632610 CCAATTTCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.43, C:0.29, G:0.06, T:0.23
Consensus pattern (40 bp):
AACCAATATGCCATCATTTGACACCACAAATCATACACTA
Found at i:68642741 original size:13 final size:13
Alignment explanation
Indices: 68642723--68642747 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68642713 GATCGAGTCC
68642723 ATAAATATTATTA
1 ATAAATATTATTA
68642736 ATAAATATTATT
1 ATAAATATTATT
68642748 GATTTAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAAATATTATTA
Found at i:68651154 original size:13 final size:13
Alignment explanation
Indices: 68651138--68651162 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68651128 TTTCTATTCA
68651138 TAACATATTTTCT
1 TAACATATTTTCT
68651151 TAACATATTTTC
1 TAACATATTTTC
68651163 AATTTATTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (13 bp):
TAACATATTTTCT
Found at i:68651982 original size:94 final size:95
Alignment explanation
Indices: 68651818--68652009 Score: 289
Period size: 94 Copynumber: 2.0 Consensus size: 95
68651808 ATATCAACTC
* * * **
68651818 TGTAAATATTCCTATTTTATATTTACGAACTTGGTTTACGGTTTATGGAAATGGGGTTCTAAAAT
1 TGTAAATATTCCTATTTTATACTTACGAACTTGGTTTACAGTTTACGGAAATGAAGTTCTAAAAT
*
68651883 CATATTTTTCAACACCACT-AAAATCGAGT
66 AATATTTTTCAACACCACTGAAAATCGAGT
* *
68651912 TGTAAATATTCCTATTTTATACTTAC-AGACTTGGTTTACAGTTTACGGAAATGAAGTTTTGAAA
1 TGTAAATATTCCTATTTTATACTTACGA-ACTTGGTTTACAGTTTACGGAAATGAAGTTCTAAAA
68651976 TAATATTTTTCAACACCACTGAAAATCGAGT
65 TAATATTTTTCAACACCACTGAAAATCGAGT
68652007 TGT
1 TGT
68652010 TACAAATCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
93 1 0.01
94 74 0.84
95 13 0.15
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.39
Consensus pattern (95 bp):
TGTAAATATTCCTATTTTATACTTACGAACTTGGTTTACAGTTTACGGAAATGAAGTTCTAAAAT
AATATTTTTCAACACCACTGAAAATCGAGT
Found at i:68652532 original size:17 final size:17
Alignment explanation
Indices: 68652503--68652535 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
68652493 TTAAATTGTA
68652503 GTTTGAAAAAACAAAAC
1 GTTTGAAAAAACAAAAC
68652520 GTTT-AAAAGAACAAAA
1 GTTTGAAAA-AACAAAA
68652536 AAAATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.61, C:0.09, G:0.12, T:0.18
Consensus pattern (17 bp):
GTTTGAAAAAACAAAAC
Found at i:68654522 original size:32 final size:32
Alignment explanation
Indices: 68654486--68654546 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
68654476 TCTTTTTACC
* *
68654486 ATTTTAGAATAATCATGAATGTAGTTTACTAT
1 ATTTTAGAATAACCATAAATGTAGTTTACTAT
* *
68654518 ATTTTAGAGTGACCATAAATGTAGTTTAC
1 ATTTTAGAATAACCATAAATGTAGTTTAC
68654547 CCTAATTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (32 bp):
ATTTTAGAATAACCATAAATGTAGTTTACTAT
Found at i:68659076 original size:22 final size:21
Alignment explanation
Indices: 68659048--68659111 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
68659038 AGAGAATATT
*
68659048 TACTATTCATGCTAGAGAATC
1 TACTATTCATGCCAGAGAATC
*
68659069 ATACTATTTC-TGCCAGAGATTTC
1 -TACTA-TTCATGCCAGAGA-ATC
*
68659092 TACTGTTCATGCCAGAGAAT
1 TACTATTCATGCCAGAGAAT
68659112 ATTTCCTGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
21 4 0.11
22 26 0.74
23 5 0.14
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (21 bp):
TACTATTCATGCCAGAGAATC
Found at i:68662994 original size:15 final size:15
Alignment explanation
Indices: 68662974--68663009 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
68662964 ATGTTGTATG
68662974 TAATTCGTCTATTTA
1 TAATTCGTCTATTTA
*
68662989 TAATTCGTCTATTTG
1 TAATTCGTCTATTTA
68663004 TAATTC
1 TAATTC
68663010 ATCTGTTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.25, C:0.14, G:0.08, T:0.53
Consensus pattern (15 bp):
TAATTCGTCTATTTA
Found at i:68666350 original size:9 final size:9
Alignment explanation
Indices: 68666334--68666605 Score: 94
Period size: 9 Copynumber: 29.0 Consensus size: 9
68666324 CGGTCCAATT
68666334 TAATTTTTA
1 TAATTTTTA
*
68666343 TGATTTTTA
1 TAATTTTTA
68666352 TAATTTTTA
1 TAATTTTTA
* *
68666361 TAAGTCTATA
1 TAA-TTTTTA
*
68666371 TCAATTTTAA
1 T-AATTTTTA
*
68666381 TATTTTTTTA
1 TA-ATTTTTA
68666391 TAAATTTTTA
1 T-AATTTTTA
*
68666401 CAATTTTTA
1 TAATTTTTA
*
68666410 TTATTTTTAA
1 TAATTTTT-A
* * *
68666420 GAACTTTAA
1 TAATTTTTA
*
68666429 TACTTTTT-
1 TAATTTTTA
*
68666437 TAAAATTTTA
1 T-AATTTTTA
*
68666447 -AATATTTAAAA
1 TAAT-TTT--TA
* *
68666458 TAAGTTTAA
1 TAATTTTTA
68666467 TTAA-TTTTA
1 -TAATTTTTA
68666476 TAAATTTTTTA
1 T-AA-TTTTTA
68666487 TAATTTTT-
1 TAATTTTTA
*
68666495 TAATATTTA
1 TAATTTTTA
*
68666504 TAAGTTTTCA
1 TAA-TTTTTA
68666514 TAATTTTTTTA
1 TAA--TTTTTA
*
68666525 TAATTTTAA
1 TAATTTTTA
*
68666534 TAAGTTTATA
1 TAA-TTTTTA
*
68666544 TCAATTTATA
1 T-AATTTTTA
* *
68666554 TTAGTTTTA
1 TAATTTTTA
68666563 -ATATTTTT-
1 TA-ATTTTTA
68666571 TAA-TTTT-
1 TAATTTTTA
68666578 TAATATTTT-
1 TAAT-TTTTA
68666587 TAATATTTTA
1 TAAT-TTTTA
*
68666597 TGATTTTTA
1 TAATTTTTA
68666606 ATCATTATTT
Statistics
Matches: 197, Mismatches: 41, Indels: 50
0.68 0.14 0.17
Matches are distributed among these distances:
7 7 0.04
8 12 0.06
9 100 0.51
10 53 0.27
11 23 0.12
12 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.60
Consensus pattern (9 bp):
TAATTTTTA
Found at i:68666485 original size:11 final size:10
Alignment explanation
Indices: 68666471--68666531 Score: 56
Period size: 11 Copynumber: 6.2 Consensus size: 10
68666461 GTTTAATTAA
68666471 TTTTATAAATT
1 TTTTAT-AATT
68666482 TTTTATAA-T
1 TTTTATAATT
68666491 TTTT-TAA-T
1 TTTTATAATT
* *
68666499 ATTTATAAGT
1 TTTTATAATT
*
68666509 TTTCATAATTT
1 TTTTATAA-TT
68666520 TTTTATAATT
1 TTTTATAATT
68666530 TT
1 TT
68666532 AATAAGTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
8 7 0.17
9 8 0.19
10 13 0.31
11 14 0.33
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:68666542 original size:38 final size:37
Alignment explanation
Indices: 68666387--68666543 Score: 103
Period size: 38 Copynumber: 4.2 Consensus size: 37
68666377 TTAATATTTT
* * *
68666387 TTTATAAATTTT-TACAA-TTTTTATTATTTTTAAGAAC
1 TTTAT-AATTTTATA-AATTTTTTATAATTTTTAATAAG
* * * *
68666424 TTTAATACTTTTTTAAA-ATTTTA-AATATTTAAAATAAG
1 TTT-ATAATTTTATAAATTTTTTATAAT-TTT-TAATAAG
68666462 TTTAATTAATTTTATAAATTTTTTATAATTTTTTAAT-A-
1 TTT-A-TAATTTTATAAATTTTTTATAA-TTTTTAATAAG
*
68666500 TTTATAAGTTTTCATAATTTTTTTATAA-TTTTAATAAG
1 TTTATAA-TTTT-ATAAATTTTTTATAATTTTTAATAAG
68666538 TTTATA
1 TTTATA
68666544 TCAATTTATA
Statistics
Matches: 97, Mismatches: 11, Indels: 23
0.74 0.08 0.18
Matches are distributed among these distances:
36 12 0.12
37 24 0.25
38 36 0.37
39 11 0.11
40 8 0.08
41 5 0.05
42 1 0.01
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (37 bp):
TTTATAATTTTATAAATTTTTTATAATTTTTAATAAG
Found at i:68666580 original size:17 final size:17
Alignment explanation
Indices: 68666558--68666607 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
68666548 TTTATATTAG
68666558 TTTTAATATTTTTTAAT-
1 TTTTAATA-TTTTTAATA
68666575 TTTTAATATTTTTAATA
1 TTTTAATATTTTTAATA
68666592 TTTT-ATGATTTTTAAT
1 TTTTAAT-ATTTTTAAT
68666608 CATTATTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.32
17 21 0.68
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTTAATATTTTTAATA
Found at i:68666587 original size:26 final size:27
Alignment explanation
Indices: 68666558--68666616 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
68666548 TTTATATTAG
*
68666558 TTTTAATATTTTTTAATTTTTAAT-AT
1 TTTTAATATTTTATAATTTTTAATCAT
*
68666584 TTTTAATATTTTATGATTTTTAATCAT
1 TTTTAATATTTTATAATTTTTAATCAT
68666611 TATTTA
1 T-TTTA
68666617 TGGAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 22 0.76
27 3 0.10
28 4 0.14
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (27 bp):
TTTTAATATTTTATAATTTTTAATCAT
Found at i:68667411 original size:202 final size:201
Alignment explanation
Indices: 68667088--68667622 Score: 720
Period size: 201 Copynumber: 2.7 Consensus size: 201
68667078 AATGTTGAAA
* * * * * *
68667088 ATTTTTAACTCTATAAACAGGCAGGCTTAAGAGACTGAAAAGTGTAAGAAAAAAATTAGTAAAAA
1 ATTTTTAACTCTATAAACAAGCAGTCTTAAGAGACTGATAAGTATGAGAAAATAATTAGTAAAAA
* * * * * *
68667153 -AACTGTGGTTGTTATTATTTTGCAACTATCACTTGCTTATAATACGTAACTATAAAAACTTACT
66 GTAC-CTGG-AGTTGTTATTTTACAACTATCACTTGCTTATAATACATAACTATAAAAACTTACT
* *
68667217 AAATC-TTTTTCATTTATCATTTAATAGAAAATATATACTCCACTTAATACATTGGATTATTATT
129 AAATCGTTTTT-ATTTATCATTTAATAAAAAATATATACTCCACTTAATACATTGGAGTATTATT
68667281 TGATACACAC
193 TGAT-CACAC
** *
68667291 ATTTTTAACTCTATAAACAAATAGTCTTAAGAGACTGATAAGTATGAGAAAATAATTACTAAAAA
1 ATTTTTAACTCTATAAACAAGCAGTCTTAAGAGACTGATAAGTATGAGAAAATAATTAGTAAAAA
* *
68667356 GTACCTGGAGTTGTTATTTTACAACGATCACTTGTTTATAATACATAACTATAAAAACTTACTAA
66 GTACCTGGAGTTGTTATTTTACAACTATCACTTGCTTATAATACATAACTATAAAAACTTACTAA
*
68667421 ATCGTTTTTATTTATCATTTAATAAAAAATATATACTCCACTTAATACATTTGAGTATTATTTGA
131 ATCGTTTTTATTTATCATTTAATAAAAAATATATACTCCACTTAATACATTGGAGTATTATTTGA
*
68667486 TTACAC
196 TCACAC
*
68667492 ATTTTTAACTCTATAAACAAGCGGAT-TTAAGAGACTGATAAGTATGAGAAAATAATTAGTAAAA
1 ATTTTTAACTCTATAAACAAGCAG-TCTTAAGAGACTGATAAGTATGAGAAAATAATTAGTAAAA
** * * * * *
68667556 AGTATTTGGGGTTGTTATTTCACAA-TAGTCACTTACTTATAATTCATAACTATAAATACTTA-T
65 AGTACCTGGAGTTGTTATTTTACAACTA-TCACTTGCTTATAATACATAACTATAAAAACTTACT
68667619 AAAT
129 AAAT
68667623 TGAAGTAGGG
Statistics
Matches: 294, Mismatches: 34, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
200 6 0.02
201 113 0.38
202 109 0.37
203 64 0.22
204 2 0.01
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.37
Consensus pattern (201 bp):
ATTTTTAACTCTATAAACAAGCAGTCTTAAGAGACTGATAAGTATGAGAAAATAATTAGTAAAAA
GTACCTGGAGTTGTTATTTTACAACTATCACTTGCTTATAATACATAACTATAAAAACTTACTAA
ATCGTTTTTATTTATCATTTAATAAAAAATATATACTCCACTTAATACATTGGAGTATTATTTGA
TCACAC
Found at i:68667708 original size:19 final size:20
Alignment explanation
Indices: 68667686--68667724 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
68667676 AGCACACAAC
*
68667686 ACATA-CTGGCGCACGAAGT
1 ACATATCTGGCACACGAAGT
68667705 ACATATCTGGCACACGAAGT
1 ACATATCTGGCACACGAAGT
68667725 GCATCCTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.18
Consensus pattern (20 bp):
ACATATCTGGCACACGAAGT
Found at i:68674383 original size:3 final size:3
Alignment explanation
Indices: 68674375--68674411 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
68674365 ATTTCAATTA
68674375 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
68674412 GAAGGAAACG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:68675105 original size:22 final size:22
Alignment explanation
Indices: 68675068--68675151 Score: 77
Period size: 22 Copynumber: 3.9 Consensus size: 22
68675058 CTTTGCTTAT
*
68675068 TTGAATCGATT-GTTTTGTTGA
1 TTGAATCGATTCTTTTTGTTGA
* *
68675089 TTGACTCGATTCTTTTTGTTGT
1 TTGAATCGATTCTTTTTGTTGA
* *
68675111 TTGAATCGA-T-TGTTTATT-A
1 TTGAATCGATTCTTTTTGTTGA
68675130 TTTGAATCGATTCTTTGTTGTT
1 -TTGAATCGATTCTTT-TTGTT
68675152 TAACTCGATT
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
20 15 0.31
21 12 0.24
22 18 0.37
23 4 0.08
ACGTcount: A:0.17, C:0.08, G:0.19, T:0.56
Consensus pattern (22 bp):
TTGAATCGATTCTTTTTGTTGA
Found at i:68675119 original size:43 final size:43
Alignment explanation
Indices: 68675050--68675151 Score: 122
Period size: 42 Copynumber: 2.4 Consensus size: 43
68675040 ATTTGTTTTA
* * *
68675050 AATCGATTCTTTG--CTTATTTGAATCGATTGTTTTGTTGA-TTG
1 AATCGATTCTTTGTTGTTGTTTGAATCGATTG-TTTATT-ATTTG
*
68675092 ACTCGATTCTTT-TTGTTGTTTGAATCGATTGTTTATTATTTG
1 AATCGATTCTTTGTTGTTGTTTGAATCGATTGTTTATTATTTG
68675134 AATCGATTCTTTGTTGTT
1 AATCGATTCTTTGTTGTT
68675152 TAACTCGATT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 30 0.59
43 20 0.39
ACGTcount: A:0.18, C:0.10, G:0.18, T:0.55
Consensus pattern (43 bp):
AATCGATTCTTTGTTGTTGTTTGAATCGATTGTTTATTATTTG
Found at i:68675159 original size:20 final size:20
Alignment explanation
Indices: 68675050--68675162 Score: 111
Period size: 20 Copynumber: 5.5 Consensus size: 20
68675040 ATTTGTTTTA
*
68675050 AATCGATTCTTTGCTTATTTG
1 AATCGATTCTTTG-TTGTTTG
* *
68675071 AATCGATTGTTTTGTTGATTG
1 AATCGATT-CTTTGTTGTTTG
*
68675092 ACTCGATTCTTTTTGTTGTTTG
1 AATCGATTC--TTTGTTGTTTG
* * *
68675114 AATCGATTGTTTATTATTTG
1 AATCGATTCTTTGTTGTTTG
68675134 AATCGATTCTTTGTTGTTT-
1 AATCGATTCTTTGTTGTTTG
68675153 AACTCGATTC
1 AA-TCGATTC
68675163 AAACGCCAAC
Statistics
Matches: 75, Mismatches: 13, Indels: 9
0.77 0.13 0.09
Matches are distributed among these distances:
19 2 0.03
20 32 0.43
21 20 0.27
22 21 0.28
ACGTcount: A:0.19, C:0.12, G:0.17, T:0.53
Consensus pattern (20 bp):
AATCGATTCTTTGTTGTTTG
Found at i:68675269 original size:21 final size:20
Alignment explanation
Indices: 68675244--68675300 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
68675234 GTTTCTTTTG
68675244 AATCGATTTTTTGTTATCTTA
1 AATCGATTTTTTGTTAT-TTA
* ** *
68675265 AATCGATCTTTACTTATTTG
1 AATCGATTTTTTGTTATTTA
68675285 AATCGATTGTTTTGTT
1 AATCGATT-TTTTGTT
68675301 GATTGACTCA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
20 9 0.32
21 19 0.68
ACGTcount: A:0.23, C:0.11, G:0.12, T:0.54
Consensus pattern (20 bp):
AATCGATTTTTTGTTATTTA
Found at i:68675328 original size:22 final size:22
Alignment explanation
Indices: 68675294--68675339 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
68675284 GAATCGATTG
* *
68675294 TTTTGTTGATTGACTCAATTCT
1 TTTTATTGATTGAATCAATTCT
* *
68675316 TTTTATTGTTTGAATCGATTCT
1 TTTTATTGATTGAATCAATTCT
68675338 TT
1 TT
68675340 GTTGTTTAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.17, C:0.11, G:0.13, T:0.59
Consensus pattern (22 bp):
TTTTATTGATTGAATCAATTCT
Found at i:68675346 original size:20 final size:20
Alignment explanation
Indices: 68675240--68675356 Score: 76
Period size: 20 Copynumber: 5.7 Consensus size: 20
68675230 TGTTGTTTCT
* *
68675240 TTTGAATCGATTTTTTGTTA
1 TTTGAATCGATTCTTTGTTG
* * *
68675260 TCTTAAATCGA-TCTTTACTTA
1 T-TTGAATCGATTCTTT-GTTG
*
68675281 TTTGAATCGATTGTTTTGTTG
1 TTTGAATCGATT-CTTTGTTG
* * * *
68675302 ATTGACTCAATTCTTTTTATTG
1 TTTGAATCGATTC--TTTGTTG
68675324 TTTGAATCGATTCTTTGTTG
1 TTTGAATCGATTCTTTGTTG
68675344 TTT-AACTCGATTC
1 TTTGAA-TCGATTC
68675357 AAAGGTCAAC
Statistics
Matches: 74, Mismatches: 16, Indels: 14
0.71 0.15 0.13
Matches are distributed among these distances:
19 2 0.03
20 29 0.39
21 24 0.32
22 19 0.26
ACGTcount: A:0.21, C:0.12, G:0.14, T:0.54
Consensus pattern (20 bp):
TTTGAATCGATTCTTTGTTG
Found at i:68676604 original size:7 final size:7
Alignment explanation
Indices: 68676592--68676618 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
68676582 GTTGAAGGGA
68676592 AAATGGT
1 AAATGGT
68676599 AAATGGT
1 AAATGGT
68676606 AAATGGT
1 AAATGGT
68676613 AAATGG
1 AAATGG
68676619 GTTAAGAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.30, T:0.26
Consensus pattern (7 bp):
AAATGGT
Found at i:68681359 original size:17 final size:18
Alignment explanation
Indices: 68681345--68681428 Score: 71
Period size: 19 Copynumber: 4.4 Consensus size: 18
68681335 ATAATCTTCG
68681345 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
68681363 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
*
68681382 TATGATATAGGCAATCTTAGA
1 -AGGATAT--GCAATCTTAGA
* * *
68681403 TATGATATGTAATCTTACA
1 -AGGATATGCAATCTTAGA
68681422 A-GATATG
1 AGGATATG
68681429 ATTTTGTAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.10
18 1 0.02
19 34 0.57
21 19 0.32
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.35
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:68681397 original size:21 final size:19
Alignment explanation
Indices: 68681347--68681419 Score: 119
Period size: 19 Copynumber: 3.7 Consensus size: 19
68681337 AATCTTCGAG
68681347 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
68681366 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
68681385 GATATAGGCAATCTTAGATAT
1 GATAT--GCAATCTTAGATAT
*
68681406 GATATGTAATCTTA
1 GATATGCAATCTTA
68681420 CAAGATATGA
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 32 0.63
21 19 0.37
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:68681447 original size:22 final size:22
Alignment explanation
Indices: 68681360--68681442 Score: 70
Period size: 21 Copynumber: 3.9 Consensus size: 22
68681350 ATGCAATCTT
*
68681360 AGATATGATATGCAATCTT---
1 AGATATGATATGTAATCTTACA
*
68681379 AGATATGATATAGGCAATCTT---
1 AGATATGATAT--GTAATCTTACA
68681400 AGATATGATATGTAATCTTACA
1 AGATATGATATGTAATCTTACA
*
68681422 AGATATGATTTTGTAATCTTA
1 AGATATGA-TATGTAATCTTA
68681443 GAGATTTAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
19 18 0.32
21 19 0.34
22 8 0.14
23 11 0.20
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTACA
Found at i:68681643 original size:18 final size:21
Alignment explanation
Indices: 68681619--68681657 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
68681609 TGGCTTACTG
*
68681619 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
68681638 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
68681658 TTGAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:68682072 original size:4 final size:4
Alignment explanation
Indices: 68682045--68682086 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
68682035 AATTATTTCT
* *
68682045 TTTA TTT- TTTA ATTA GTT- TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
68682087 AAACAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
3 5 0.15
4 28 0.85
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:68682086 original size:12 final size:11
Alignment explanation
Indices: 68682045--68682085 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
68682035 AATTATTTCT
68682045 TTTATTTTTTA
1 TTTATTTTTTA
* *
68682056 ATTAGTTTTTA
1 TTTATTTTTTA
68682067 TTTATTTATTTA
1 TTTATTT-TTTA
68682079 TTTATTT
1 TTTATTT
68682086 AAAACAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTATTTTTTA
Found at i:68684950 original size:15 final size:15
Alignment explanation
Indices: 68684926--68684957 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
68684916 TATGCATGCA
*
68684926 AAATATAAAAGACAT
1 AAATACAAAAGACAT
68684941 AAATACAAAAGACAT
1 AAATACAAAAGACAT
68684956 AA
1 AA
68684958 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:68702986 original size:21 final size:22
Alignment explanation
Indices: 68702962--68703002 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
68702952 TAAAAAAAAA
*
68702962 TATAATTTTTA-AATATTTTTT
1 TATAAATTTTATAATATTTTTT
*
68702983 TATAAATTTTATATTATTTT
1 TATAAATTTTATAATATTTT
68703003 ATCACGTGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (22 bp):
TATAAATTTTATAATATTTTTT
Found at i:68704206 original size:23 final size:24
Alignment explanation
Indices: 68704165--68704209 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
68704155 TTTAATACAG
68704165 TATTTTTATTTTCAGAAATTTAGT
1 TATTTTTATTTTCAGAAATTTAGT
*
68704189 TATTTTTATTTTTA-AAATTTA
1 TATTTTTATTTTCAGAAATTTA
68704210 AAAATTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (24 bp):
TATTTTTATTTTCAGAAATTTAGT
Found at i:68704216 original size:23 final size:24
Alignment explanation
Indices: 68704166--68704216 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
68704156 TTAATACAGT
***
68704166 ATTTTTATTTTCAGAAATTTAGTT
1 ATTTTTATTTTCAGAAATTTAAAA
*
68704190 ATTTTTATTTTTA-AAATTTAAAA
1 ATTTTTATTTTCAGAAATTTAAAA
68704213 ATTT
1 ATTT
68704217 AATTATAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (24 bp):
ATTTTTATTTTCAGAAATTTAAAA
Found at i:68709893 original size:21 final size:22
Alignment explanation
Indices: 68709854--68709894 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
68709844 TCATAAAAAA
* *
68709854 TTTAAAATTATTAACAATATAT
1 TTTAAAAGTATTAAAAATATAT
68709876 TTTAAAAGTA-TAAAAATAT
1 TTTAAAAGTATTAAAAATAT
68709895 TAAACTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (22 bp):
TTTAAAAGTATTAAAAATATAT
Found at i:68709917 original size:9 final size:9
Alignment explanation
Indices: 68709879--68710002 Score: 58
Period size: 9 Copynumber: 13.4 Consensus size: 9
68709869 AATATATTTT
*
68709879 AAAAGTATA
1 AAAATTATA
*
68709888 AAAA-TATT
1 AAAATTATA
*
68709896 AAACTTATA
1 AAAATTATA
68709905 AAAATTATAAA
1 AAAATTAT--A
68709916 AAAATTCATAA
1 AAAATT-AT-A
* *
68709927 AAAATAAGA
1 AAAATTATA
68709936 AAAATCTA-A
1 AAAAT-TATA
*
68709945 TAAATTATAA
1 AAAATTAT-A
68709955 AAATATTATA
1 AAA-ATTATA
* *
68709965 ATAACTA-A
1 AAAATTATA
*
68709973 AACATT-TA
1 AAAATTATA
*
68709981 AAAGTTATA
1 AAAATTATA
*
68709990 AAAGTTATA
1 AAAATTATA
68709999 AAAA
1 AAAA
68710003 AAATTCATAA
Statistics
Matches: 88, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
8 17 0.19
9 42 0.48
10 8 0.09
11 19 0.22
12 2 0.02
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (9 bp):
AAAATTATA
Found at i:68709926 original size:21 final size:21
Alignment explanation
Indices: 68709902--68709965 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
68709892 TATTAAACTT
68709902 ATAAAAATTATAAAAAAATTC
1 ATAAAAATTATAAAAAAATTC
68709923 ATAAAAA--ATAAGAAAAA-TC
1 ATAAAAATTATAA-AAAAATTC
*
68709942 -TAATAAATTATAAAAATATT-
1 ATAA-AAATTATAAAAAAATTC
68709962 ATAA
1 ATAA
68709966 TAACTAAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
18 3 0.08
19 9 0.25
20 9 0.25
21 15 0.42
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (21 bp):
ATAAAAATTATAAAAAAATTC
Found at i:68709966 original size:21 final size:19
Alignment explanation
Indices: 68709879--68710002 Score: 57
Period size: 17 Copynumber: 6.7 Consensus size: 19
68709869 AATATATTTT
* *
68709879 AAAAGTATAAAAA-TAT-T
1 AAAATTATAAAAATTATAA
*
68709896 AAACTTATAAAAATTATAAA
1 AAAATTATAAAAATTAT-AA
*
68709916 AAAATTCATAAAAAATA-AGA
1 AAAATT-ATAAAAATTATA-A
*
68709936 AAAATCTA-ATAAATTATAA
1 AAAAT-TATAAAAATTATAA
* *
68709955 AAATATTATAATAA--CTAA
1 AAA-ATTATAAAAATTATAA
* *
68709973 AACATT-TAAAAGTTAT-A
1 AAAATTATAAAAATTATAA
*
68709990 AAAGTTATAAAAA
1 AAAATTATAAAAA
68710003 AAATTCATAA
Statistics
Matches: 78, Mismatches: 17, Indels: 23
0.66 0.14 0.19
Matches are distributed among these distances:
16 4 0.05
17 19 0.24
18 14 0.18
19 13 0.17
20 18 0.23
21 10 0.13
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (19 bp):
AAAATTATAAAAATTATAA
Found at i:68723775 original size:7 final size:7
Alignment explanation
Indices: 68723765--68723791 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
68723755 CATTCTTAAC
68723765 CCATTTA
1 CCATTTA
68723772 CCATTTA
1 CCATTTA
68723779 CCATTTA
1 CCATTTA
68723786 CCATTT
1 CCATTT
68723792 TCCCTTCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.44
Consensus pattern (7 bp):
CCATTTA
Found at i:68725101 original size:21 final size:21
Alignment explanation
Indices: 68725027--68725143 Score: 89
Period size: 21 Copynumber: 5.6 Consensus size: 21
68725017 GTTGACCTTT
68725027 GAATCGAGTT-AAACAAC-AAA
1 GAATCGA-TTCAAACAACAAAA
*
68725047 GAATCGATTCAAACAATAAAAA
1 GAATCGATTCAAACAA-CAAAA
* * *
68725069 GAATTGAGTCAATCAACAAAA
1 GAATCGATTCAAACAACAAAA
* * **
68725090 CAATCGATTCAAATAAGTAAA
1 GAATCGATTCAAACAACAAAA
* *
68725111 G-ATCGATTTAAGATAACAAAA
1 GAATCGATTCAA-ACAACAAAA
68725132 -AATCGATTCAAA
1 GAATCGATTCAAA
68725144 AGAAACAACA
Statistics
Matches: 75, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
19 2 0.03
20 23 0.31
21 34 0.45
22 16 0.21
ACGTcount: A:0.54, C:0.14, G:0.12, T:0.21
Consensus pattern (21 bp):
GAATCGATTCAAACAACAAAA
Found at i:68725246 original size:20 final size:20
Alignment explanation
Indices: 68725221--68725333 Score: 111
Period size: 20 Copynumber: 5.5 Consensus size: 20
68725211 GTTGGCGTTT
68725221 GAATCGAGTT-AAACAACAAA
1 GAATCGA-TTCAAACAACAAA
* *
68725241 GAATCGATTCAAATAATAAA
1 GAATCGATTCAAACAACAAA
*
68725261 CAATCGATTCAAACAACAAAAA
1 GAATCGATTCAAACAAC--AAA
* *
68725283 GAATCGAGTCAATCAACAAAA
1 GAATCGATTCAAACAAC-AAA
* *
68725304 CAATCGATTCAAATAAGCAAA
1 GAATCGATTCAAACAA-CAAA
68725325 GAATCGATT
1 GAATCGATT
68725334 TAAAACAAAT
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
19 2 0.03
20 29 0.38
21 27 0.36
22 18 0.24
ACGTcount: A:0.53, C:0.17, G:0.12, T:0.19
Consensus pattern (20 bp):
GAATCGATTCAAACAACAAA
Found at i:68725306 original size:43 final size:43
Alignment explanation
Indices: 68725232--68725316 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
68725222 AATCGAGTTA
* *
68725232 AACAACAAAGAATCGATTCAAATAATAAACAATCGATTCAAAC
1 AACAACAAAGAATCGAGTCAAATAAAAAACAATCGATTCAAAC
68725275 AACAA-AAAGAATCGAGTC-AATCAACAAAACAATCGATTCAAA
1 AACAACAAAGAATCGAGTCAAAT-AA-AAAACAATCGATTCAAA
68725317 TAAGCAAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
41 3 0.08
42 14 0.37
43 21 0.55
ACGTcount: A:0.56, C:0.19, G:0.08, T:0.16
Consensus pattern (43 bp):
AACAACAAAGAATCGAGTCAAATAAAAAACAATCGATTCAAAC
Found at i:68725308 original size:21 final size:22
Alignment explanation
Indices: 68725232--68725316 Score: 86
Period size: 22 Copynumber: 4.0 Consensus size: 22
68725222 AATCGAGTTA
*
68725232 AACAACAAAGAATCGATTCAAA-
1 AACAA-AAACAATCGATTCAAAC
* *
68725254 TA-ATAAACAATCGATTCAAAC
1 AACAAAAACAATCGATTCAAAC
* * *
68725275 AACAAAAAGAATCGAGTCAATC
1 AACAAAAACAATCGATTCAAAC
68725297 AAC-AAAACAATCGATTCAAA
1 AACAAAAACAATCGATTCAAA
68725317 TAAGCAAAGA
Statistics
Matches: 50, Mismatches: 11, Indels: 5
0.76 0.17 0.08
Matches are distributed among these distances:
20 15 0.30
21 16 0.32
22 19 0.38
ACGTcount: A:0.56, C:0.19, G:0.08, T:0.16
Consensus pattern (22 bp):
AACAAAAACAATCGATTCAAAC
Found at i:68725324 original size:22 final size:21
Alignment explanation
Indices: 68725242--68725333 Score: 91
Period size: 21 Copynumber: 4.4 Consensus size: 21
68725232 AACAACAAAG
*
68725242 AATCGATTCAAATAA-TAAAC
1 AATCGATTCAAATAACAAAAC
* *
68725262 AATCGATTCAAACAACAAAAAG
1 AATCGATTCAAATAAC-AAAAC
*
68725284 AATCGAGTC-AATCAACAAAAC
1 AATCGATTCAAAT-AACAAAAC
*
68725305 AATCGATTCAAATAAGC-AAAG
1 AATCGATTCAAATAA-CAAAAC
68725326 AATCGATT
1 AATCGATT
68725334 TAAAACAAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
20 14 0.24
21 27 0.46
22 18 0.31
ACGTcount: A:0.53, C:0.17, G:0.10, T:0.20
Consensus pattern (21 bp):
AATCGATTCAAATAACAAAAC
Found at i:68725326 original size:42 final size:40
Alignment explanation
Indices: 68725222--68725331 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 40
68725212 TTGGCGTTTG
* *
68725222 AATCGAGTT-AAACAACAAAGAATCGATTCAAATAATAAAC
1 AATCGA-TTCAAACAACAAAGAATCGAGTCAAATAAAAAAC
68725262 AATCGATTCAAACAACAAAAAGAATCGAGTC-AATCAACAAAAC
1 AATCGATTCAAACAAC--AAAGAATCGAGTCAAAT-AA-AAAAC
*
68725305 AATCGATTCAAATAAGCAAAGAATCGA
1 AATCGATTCAAACAA-CAAAGAATCGA
68725332 TTTAAAACAA
Statistics
Matches: 61, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
39 2 0.03
40 13 0.21
41 3 0.05
42 24 0.39
43 18 0.30
44 1 0.02
ACGTcount: A:0.55, C:0.17, G:0.11, T:0.17
Consensus pattern (40 bp):
AATCGATTCAAACAACAAAGAATCGAGTCAAATAAAAAAC
Found at i:68725980 original size:3 final size:3
Alignment explanation
Indices: 68725972--68726008 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
68725962 CGTTTCCTTC
68725972 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
68726009 TAATTGAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:68732684 original size:20 final size:19
Alignment explanation
Indices: 68732659--68732697 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
68732649 GTCAGGATGC
*
68732659 ACTTCGTGTGCCAGATATGT
1 ACTTCGTGCGCCAG-TATGT
68732679 ACTTCGTGCGCCAGTATGT
1 ACTTCGTGCGCCAGTATGT
68732698 GTTGTGTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.33
Consensus pattern (19 bp):
ACTTCGTGCGCCAGTATGT
Found at i:68733192 original size:202 final size:201
Alignment explanation
Indices: 68732761--68733295 Score: 720
Period size: 201 Copynumber: 2.7 Consensus size: 201
68732751 CCCTACTTCA
* * * * * * *
68732761 ATTTA-TAAGTATTTATAGTTATGAATTATAAGTAAGTGA-CTATTGTGAAATAACAACCCCAAA
1 ATTTAGTAAGTTTTTATAGTTATGTATTATAAGCAAGTGATC-GTTGTAAAATAACAACACCAAG
*
68732824 TACTTTTTACTAATTATTTTCTCATACTTATCAGTCTCTTAA-ATCCGCTTGTTTATAGAGTTAA
65 TACTTTTTACTAATTATTTTCTCATACTTATCAGTCTCTTAAGA-CTGCTTGTTTATAGAGTTAA
* *
68732888 AAATGTGTAATCAAATAATACTCAAATGTATTAAGTGGAGTATATATTTTTTATTAAATGATAAA
129 AAATGTGTAATCAAATAATAATCAAATGTATTAAGTGGAGTATATATTTTCTATTAAATGATAAA
68732953 TAAAAACG
194 TAAAAACG
* * *
68732961 ATTTAGTAAGTTTTTATAGTTATGTATTATAAACAAGTGATCGTTGTAAAATAACAACTCCAGGT
1 ATTTAGTAAGTTTTTATAGTTATGTATTATAAGCAAGTGATCGTTGTAAAATAACAACACCAAGT
* **
68733026 ACTTTTTAGTAATTATTTTCTCATACTTATCAGTCTCTTAAGACTATTTGTTTATAGAGTTAAAA
66 ACTTTTTACTAATTATTTTCTCATACTTATCAGTCTCTTAAGACTGCTTGTTTATAGAGTTAAAA
* *
68733091 ATGTGTGTATCAAATAATAATCCAATGTATTAAGTGGAGTATATATTTTCTATTAAATGATAAAT
131 ATGTGT-AATCAAATAATAATCAAATGTATTAAGTGGAGTATATATTTTCTATTAAATGATAAAT
68733156 GAAAAA-G
195 -AAAAACG
* * * *
68733163 ATTTAGTAAGTTTTTATAGTTACGTATTATAAGCAAGTGATAGTTGCAAAATAATAACAACCACA
1 ATTTAGTAAGTTTTTATAGTTATGTATTATAAGCAAGTGATCGTTGTAAAATAACAAC-ACCA-A
* * * * * * *
68733228 GT-TTTTTTACTAATTTTTTTCTTACACTTTTCAGTCTCTTAAGCCTGCCTGTTTATAGAGTTAA
64 GTACTTTTTACTAATTATTTTCTCATACTTATCAGTCTCTTAAGACTGCTTGTTTATAGAGTTAA
68733292 AAAT
129 AAAT
68733296 TTTCAACATT
Statistics
Matches: 294, Mismatches: 34, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
200 5 0.02
201 113 0.38
202 110 0.37
203 64 0.22
204 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.41
Consensus pattern (201 bp):
ATTTAGTAAGTTTTTATAGTTATGTATTATAAGCAAGTGATCGTTGTAAAATAACAACACCAAGT
ACTTTTTACTAATTATTTTCTCATACTTATCAGTCTCTTAAGACTGCTTGTTTATAGAGTTAAAA
ATGTGTAATCAAATAATAATCAAATGTATTAAGTGGAGTATATATTTTCTATTAAATGATAAATA
AAAACG
Found at i:68733726 original size:141 final size:143
Alignment explanation
Indices: 68733433--68735183 Score: 836
Period size: 143 Copynumber: 12.1 Consensus size: 143
68733423 NNNNNNNNNN
* * * * * * * **
68733433 CAATATTTATAAAT-AAATT-TAAAGCAATCAGAAGACACGATAACTTTTCTATGCATCACATTC
1 CAATATTTAAAAATGAAATTAAAAAG-AATCATAAAACACGAGAAGTTTGCTATGCATCACATGG
* * * * * * *
68733496 TAAATTTCCATTTTAACCTGTTAAAAATCTATA-TTGTATCTTTGATTCTGTAACTGACTTTGTC
65 TAAATTTCCATTTTAACCTCTTAAAAATTTATACTT-TATATTTAATTCTGTAACGGACTTAGCC
* * *
68733560 TCGAAATTCAAATTT
129 TCAAAATTCGAGTTT
* * * *
68733575 TAATATTTAAAAACGAAATT-AAAA-AATCATAAAACACTAGAAGTTTGCTATGCATCACACGGT
1 CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGGT
* * * * *
68733638 AATTTTCCATTTTAAACTCTTAAAAGTTTATACTTTATATTTAATT-TCGTAACGGAGTTCGCCT
66 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCT-GTAACGGACTTAGCCT
68733702 CAAAATTCGAGTTT
130 CAAAATTCGAGTTT
* * * * *
68733716 CAATAGTTAAAAATGAAATTAAAAAGAATCATAAGATACAAGAAGTTTCCTATGCATCACATGGT
1 CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGGT
* * * * ** *
68733781 AAATTTCCATTTTAACCTTTTAAAAATGTATACTTTATATTTGATTCTGTATCCAACTTAGTCTC
66 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCTGTAACGGACTTAGCCTC
* * *
68733846 GAAATGCGAATTT
131 AAAATTCGAGTTT
* * *
68733859 TAATA-TTAAAAATGAAATTAAAAA-AATCATAAATCACGAGAAGTGTGCTATGCATCACATGGT
1 CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGGT
* * * * * *
68733922 AAATTTCCTTTTTAACCTCTTAAAAATTTATATTTTATCTATAATTCTGTAACGGACTTTGCCTT
66 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCTGTAACGGACTTAGCCTC
*
68733987 AAAATTTGAGTTT
131 AAAATTCGAGTTT
* * *
68734000 CAATATTTAAAAATGAAGTTAAAAAGAATCATAAGACACGAGCAA-TTCT-CTATGCATCACATT
1 CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAG-AAGTT-TGCTATGCATCACATG
* * * * * ****
68734063 GTAAATTTCTATTTTAACCTCTTAAAAATTTACACTATATCTTAAGAAGAAGAATAAGACCCGAG
64 GTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTA-ATTCTG--T-A-A--CG-G
* * * * *
68734128 AAGTTTGCCATGCATCACATGGT-AAATTT
121 -ACTTAGCC-T-CA--AAAT--TCGAGTTT
* * * * **** **** *
68734157 CCAT-TTTAACCTTTTAA-GAATTTATACTTTATC-TATAATTTTGTAATGAAATTTGC----CA
1 CAATATTTAA-----AAATGAAATTAAAAAGAATCATA-AAACACG--A-GAAGTTTGCTATGCA
** * * * * ** * * * *** *
68734215 AAAAAT--TCGAGTTTCAATATTTAAAAATGAAAGTAAAAAGATTCATAACACGGA-ATTTTTAT
57 TCACATGGT-AAATTTCCAT-TTT-AACCT----CTTAAAA-ATTTAT-AC-TTTATA-TTTAAT
* *** * * ** ** *
68734277 TTTG-ATTTGA--TAACCGACTTTACCTCGAAATTT
111 TCTGTAACGGACTTAGCC-TC-AAAATTCG-AGTTT
* * * * *
68734310 GAAT-TTTAATATTTAATAATTAAATTTAAAAA-AAACATAAAACACAAGAAGTTTGCAATGCAT
1 CAATATTT---A---AA-AATGAAA-TTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCAT
* * * * * *
68734373 CACAT-ATAAATTTCCATTTTAACCTCTTAAAATTTTATACTTTATCTTTGATTCTATAACCGAC
58 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCTGTAACGGAC
** * *
68734437 ATT-GCCTTGAAATTTGAATTT
123 -TTAGCCTCAAAATTCGAGTTT
* *
68734458 TAATATTTAAAAAATGAAATTAAAAA-AATCATAAAACATGAGAAGTTTGCTATGCATCACATGG
1 CAATATTT-AAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGG
* * * * * * ** * *
68734522 TAAATTTTCATTTTAAACTCTTAAATATTTAAACTTTTTCTTTAATTCCATAACAGACTT-CCCT
65 TAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCTGTAACGGACTTAGCC-
*
68734586 TCAAAATTCAAGTTT
129 TCAAAATTCGAGTTT
* * * * * * * **
68734601 TAATATTAAAAAATTAAATTAAAAAGAATCAT-AAACACGAGAACTTCGCTATTCATCAAATTAT
1 CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGGT
* * * * * * *
68734665 AAATTTCCATTTTAACCTCTTAAAAATATATTCTTTAAGTTTTTCTTTGATTTTTTAACCGACTT
66 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTT-A-----TATTTAATTCTGTAACGGACTT
* * * *
68734730 CGCCTCGACATTTGAGTTT
125 AGCCTCAAAATTCGAGTTT
* * * ** * * * *
68734749 AAATATTTAAAAATGAAATTAAAAAGATTTATATTACATGAGAAGTTTTCCATGCATTACATGGT
1 CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGGT
* * * * * * * * *
68734814 AAATTTCCATCTTAACCACTTAAAAGTTTATACTTTATCTTTAATTCTATACCGGAGTTCGGCTC
66 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCTGTAACGGACTTAGCCTC
* *
68734879 AAAATTCAAATTT
131 AAAATTCGAGTTT
* * * * * * * **
68734892 CAATATTTATAAAT-AAATTTAAAACAATTAGAAGACACGAGAACTTTGCTATGCATCACATTTT
1 CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGGT
* * * * * ** *
68734956 AAATTTCCATTTTAACCTGTTAAAAATTTATACTGTATCTTTGATTATGTAATTGACTTTGCCTC
66 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCTGTAACGGACTTAGCCTC
* *
68735021 AAAATTTGAATTT
131 AAAATTCGAGTTT
* * * * *
68735034 TAATATTTAAAAATGAAATTAAAAAAAATCATAAAACACTAGAAGATTGCTATGCATCACACGGT
1 CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGGT
* * * * *
68735099 AAATTTCTATTTTAAACTCTTAAAAATTTATACTATATCTTTAATT-TCGTAACGGAGTTCA-CC
66 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCT-GTAACGGACTT-AGCC
*
68735162 TCAAAATTTGAGTTT
129 TCAAAATTCGAGTTT
68735177 CAA-ATTT
1 CAATATTT
68735184 TCATTTTAAC
Statistics
Matches: 1196, Mismatches: 328, Indels: 170
0.71 0.19 0.10
Matches are distributed among these distances:
140 1 0.00
141 204 0.17
142 284 0.24
143 398 0.33
144 8 0.01
146 1 0.00
147 2 0.00
148 73 0.06
149 64 0.05
150 6 0.01
151 9 0.01
152 8 0.01
153 19 0.02
154 3 0.00
155 8 0.01
156 18 0.02
157 27 0.02
158 10 0.01
159 11 0.01
160 15 0.01
161 2 0.00
162 5 0.00
163 4 0.00
164 5 0.00
165 4 0.00
166 4 0.00
167 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (143 bp):
CAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAAGTTTGCTATGCATCACATGGT
AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTAATTCTGTAACGGACTTAGCCTC
AAAATTCGAGTTT
Found at i:68734000 original size:284 final size:284
Alignment explanation
Indices: 68733480--68735179 Score: 866
Period size: 284 Copynumber: 5.8 Consensus size: 284
68733470 CGATAACTTT
* * *
68733480 TCTATGCATCACATTCTAAATTTCCATTTTAACCTGTTAAAAATCTATATTGTATCTTTGATTCT
1 TCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATCTATATTGTATATTTGATTCT
** * *
68733545 GTAACTGACTTTGTCTCGAAATTCAAATTTTAATATTTAAAAACGAAATTAAAAAATCATAAAAC
66 GTAACCAACTTAGTCTCGAAATGCAAATTTTAATATTTAAAAACGAAATTAAAAAATCATAAAAC
* * * *
68733610 ACTAGAAGTTTGCTATGCATCACACGGTAATTTTCCATTTTAAACTCTTAAAAGTTTATACTTTA
131 ACGAGAAGTGTGCTATGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTA
* *
68733675 TATTTAATTTCGTAACGGAGTTCGCCTCAAAATTCGAGTTTCAATAGTTAAAAATGAAATTAAAA
196 TATATAATTTCGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATAGTTAAAAATGAAATTAAAA
*
68733740 AGAATCATAAGATACAAG-AAGTT-
261 AGAATCATAAGACACAAGCAA-TTC
* * *
68733763 TCCTATGCATCACATGGTAAATTTCCATTTTAACCTTTTAAAAATGTATACTT-TATATTTGATT
1 T-CTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATCTATA-TTGTATATTTGATT
* * *
68733827 CTGTATCCAACTTAGTCTCGAAATGCGAATTTTAATA-TTAAAAATGAAATTAAAAAAATCATAA
64 CTGTAACCAACTTAGTCTCGAAATGCAAATTTTAATATTTAAAAACGAAATT-AAAAAATCATAA
* * * * *
68733891 ATCACGAGAAGTGTGCTATGCATCACATGGTAAATTTCCTTTTTAACCTCTTAAAAATTTATATT
128 AACACGAGAAGTGTGCTATGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACT
* * * * * *
68733956 TTATCTATAA-TTCTGTAACGGACTTTGCCTTAAAATTTGAGTTTCAATATTTAAAAATGAAGTT
193 TTATATATAATTTC-GTAACGGACTTCGCCTCAAAATTCGAGTTTCAATAGTTAAAAATGAAATT
*
68734020 AAAAAGAATCATAAGACACGAGCAATTC
257 AAAAAGAATCATAAGACACAAGCAATTC
* * * * * * * ***
68734048 TCTATGCATCACATTGTAAATTTCTATTTTAACCTCTTAAAAATTTACACTATATCTTAAGAAGA
1 TCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATCTATATTGTATATT-TGATTC
* * * * * ** ***
68734113 AGAATAAGACCCGAGAAGTTTGCCATGCATC-ACATGGTAAATTTCCAT-TTT---AAC-CTTTT
65 TG--T-A-A-CC---AACTTAG---T-C-TCGAAAT-GCAAATTTTAATATTTAAAAACGAAATT
* * * **** * * * * * * *** * * *
68734172 AAGAATTTATACTTTATCTATAATTTTG-TAATGAAATTTGCCAAAAAATTCGAGTTTCAATATT
116 AAAAAATCATAAAACA-CGAGAAGTGTGCT-ATG-CA--T--C-ACACGGT-AAATTTCCAT-TT
* * * * * * * * **
68734236 TAAAAATGAAAGTAAAAAGATTCATAACACGGAATTTTTATTTTGATTT-GATAACCGACTTTAC
171 T-AAACT----CTTAAAA-ATT--T-ATAC----TTTATA-TATAATTTCG-TAACGGACTTCGC
* * * * * * * * *
68734300 CTCGAAATTTGAATTTTAATATTTAATAATTAAATTTAAAAA-AAACATAAAACACAAG-AAGTT
221 CTCAAAATTCGAGTTTCAATAGTTAAAAATGAAA-TTAAAAAGAATCATAAGACACAAGCAA-TT
68734363 -
284 C
* * * * *
68734363 TGCAATGCATCACA-TATAAATTTCCATTTTAACCTCTTAAAATTTTATACTT-TATCTTTGATT
1 T-CTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATCTATA-TTGTATATTTGATT
* * * * *** *
68734426 CTATAACCGACATT-GCCTTGAAATTTGAATTTTAATATTTAAAAAATGAAATTAAAAAAATCAT
64 CTGTAACCAAC-TTAGTCTCGAAATGCAAATTTTAATATTT-AAAAACGAAATT-AAAAAATCAT
* * * * * *
68734490 AAAACATGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAAACTCTTAAATATTTAAA
126 AAAACACGAGAAGTGTGCTATGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTTATA
* * * * * * * * *
68734555 CTTTTTCTTTAATTCCATAACAGACTTC-CCTTCAAAATTCAAGTTTTAATA-TTAAAAAATTAA
191 CTTTATATATAATTTCGTAACGGACTTCGCC-TCAAAATTCGAGTTTCAATAGTT-AAAAATGAA
*
68734618 ATTAAAAAGAATCATAA-ACACGAG-AACTTC
254 ATTAAAAAGAATCATAAGACACAAGCAA-TTC
* * * * * * * *
68734648 GCTATTCATCAAATTATAAATTTCCATTTTAACCTCTTAAAAATATATTCTTTAAGTTTTTCTTT
1 TCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATCTA-T-ATT--G--TATATTT
* * * * * * *** * * *
68734713 GATTTTTTAACCGACTTCGCCTCGACATTTGAGTTTAAATATTTAAAAATGAAATTAAAAAGATT
60 GATTCTGTAACCAACTTAGTCTCGAAATGCAAATTTTAATATTTAAAAACGAAATTAAAAA-A-T
* ** * * * * * * * * * *
68734778 TATATTACATGAGAAGTTTTCCATGCATTACATGGTAAATTTCCATCTTAACCACTTAAAAGTTT
123 CATAAAACACGAGAAGTGTGCTATGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTT
* * * * * * * *
68734843 ATACTTTATCTTTAA-TTC-TATACCGGAGTTCGGCTCAAAATTCAAATTTCAATATTTATAAAT
188 ATACTTTATATATAATTTCGTA-A-CGGACTTCGCCTCAAAATTCGAGTTTCAATAGTTAAAAAT
* * * * *
68734906 -AAATTTAAAACAATTAGAAGACACGAG-AACTT-
251 GAAATTAAAAAGAATCATAAGACACAAGCAA-TTC
* * * * * *
68734938 TGCTATGCATCACATTTTAAATTTCCATTTTAACCTGTTAAAAATTTATACTGTATCTTTGATTA
1 T-CTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATCTATATTGTATATTTGATTC
*** * * * *** *
68735003 TGTAATTGACTTTGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAAATCATAA
65 TGTAACCAACTTAGTCTCGAAATGCAAATTTTAATATTTAAAAACGAAATT--AAAAAATCATAA
* *
68735068 AACACTAGAAGAT-TGCTATGCATCACACGGTAAATTTCTATTTTAAACTCTTAAAAATTTATAC
128 AACACGAGAAG-TGTGCTATGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTTATAC
* * * * * *
68735132 TATATCTTTAATTTCGTAACGGAGTTCACCTCAAAATTTGAGTTTCAA
192 TTTATATATAATTTCGTAACGGACTTCGCCTCAAAATTCGAGTTTCAA
68735180 ATTTTCATTT
Statistics
Matches: 1090, Mismatches: 237, Indels: 178
0.72 0.16 0.12
Matches are distributed among these distances:
283 18 0.02
284 305 0.28
285 227 0.21
286 14 0.01
287 9 0.01
288 1 0.00
289 8 0.01
290 39 0.04
291 191 0.18
292 3 0.00
293 19 0.02
294 16 0.01
295 3 0.00
296 1 0.00
297 5 0.00
298 16 0.01
299 4 0.00
300 9 0.01
301 18 0.02
302 11 0.01
303 3 0.00
304 1 0.00
306 5 0.00
307 19 0.02
308 13 0.01
309 2 0.00
310 2 0.00
311 3 0.00
312 1 0.00
314 2 0.00
315 45 0.04
316 68 0.06
317 9 0.01
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (284 bp):
TCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATCTATATTGTATATTTGATTCT
GTAACCAACTTAGTCTCGAAATGCAAATTTTAATATTTAAAAACGAAATTAAAAAATCATAAAAC
ACGAGAAGTGTGCTATGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTA
TATATAATTTCGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATAGTTAAAAATGAAATTAAAA
AGAATCATAAGACACAAGCAATTC
Found at i:68734121 original size:86 final size:86
Alignment explanation
Indices: 68734030--68734190 Score: 218
Period size: 86 Copynumber: 1.9 Consensus size: 86
68734020 AAAAAGAATC
* * *
68734030 ATAAGACACGAGCAA-TTCT-CTATGCATCACATTGTAAATTTCTATTTTAACCTCTTAAAAATT
1 ATAAGACACGAG-AAGTT-TGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATT
68734093 TACACTATATCTTAAGAAGAAGA
64 TACACTATATCTTAAGAAGAAGA
* * *
68734116 ATAAGACCCGAGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTTTTAAGAATTTA
1 ATAAGACACGAGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTA
* *
68734181 TACTTTATCT
66 CACTATATCT
68734191 ATAATTTTGT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
85 3 0.05
86 62 0.95
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (86 bp):
ATAAGACACGAGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTA
CACTATATCTTAAGAAGAAGA
Found at i:68734449 original size:142 final size:141
Alignment explanation
Indices: 68734272--68735140 Score: 791
Period size: 142 Copynumber: 6.1 Consensus size: 141
68734262 ACACGGAATT
* * *
68734272 TTTAT-TTTGATT-TGATAACCGACTTTACCTCGAAATTTGAATTTTAATATTTAATAATTAAAT
1 TTTATCTTTGATTCT-ATAACCGAC-TTGCCTCGAAATTTGAATTTTAATATTTAAAAATGAAA-
* * * *
68734335 TTAAAAAAAACATAAAACACAAGAAGTTTGCAATGCATCACA-TATAAATTTCCATTTTAACCTC
63 TTAAAAAAATCATAAAACACGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTC
68734399 TTAAAATTTTATAC
128 TTAAAATTTTATAC
*
68734413 TTTATCTTTGATTCTATAACCGACATTGCCTTGAAATTTGAATTTTAATATTTAAAAAATGAAAT
1 TTTATCTTTGATTCTATAACCGAC-TTGCCTCGAAATTTGAATTTTAATATTT-AAAAATGAAAT
* * * *
68734478 TAAAAAAATCATAAAACATGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAAACTCT
64 TAAAAAAATCATAAAACACGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCT
*
68734543 T-AAATATTTAAAC
129 TAAAAT-TTTATAC
* * * * * * * * *
68734556 TTTTTCTTTAATTCCATAACAGACTTCCCTTC-AAAATTCAAGTTTTAATATTAAAAAATTAAAT
1 TTTATCTTTGATTCTATAACCGACTTGCC-TCGAAATTTGAA-TTTTAATATTTAAAAATGAAAT
* * * * *
68734620 TAAAAAGAATCAT-AAACACGAGAACTTCGCTATTCATCAAATTATAAATTTCCATTTTAACCTC
64 TAAAAA-AATCATAAAACACGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTC
* *
68734684 TTAAAAATATATTCTTTAAG
128 TT--AAA-AT-TT-TAT-AC
* * * * * *
68734704 TTTTTCTTTGATTTTTTAACCGACTTCGCCTCGACATTTGAGTTTAAATATTTAAAAATGAAATT
1 TTTATCTTTGATTCTATAACCGACTT-GCCTCGAAATTTGAATTTTAATATTTAAAAATGAAATT
* * ** * * * * * * *
68734769 AAAAAGATTTATATTACATGAGAAGTTTTCCATGCATTACATGGTAAATTTCCATCTTAACCACT
65 AAAAA-AATCATAAAACACGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCT
*
68734834 TAAAAGTTTATAC
129 TAAAATTTTATAC
* * * * ** * *
68734847 TTTATCTTTAATTCTAT-ACCGGAGTTCGGCTCAAAATTCAAATTTCAATATTTATAAAT-AAAT
1 TTTATCTTTGATTCTATAACC-GACTT-GCCTCGAAATTTGAATTTTAATATTTAAAAATGAAA-
* * * * * * *
68734910 TTAAAACAATTAGAAGACACGAGAACTTTGCTATGCATCACATTTTAAATTTCCATTTTAACCTG
63 TTAAAAAAATCATAAAACACGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTC
*
68734975 TTAAAAATTTATAC
128 TTAAAATTTTATAC
* * * ** *
68734989 TGTATCTTTGATTATGTAATTGACTTTGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAATT
1 TTTATCTTTGATTCTATAACCGAC-TTGCCTCGAAATTTGAATTTTAATATTTAAAAATGAAATT
* * ** * *
68735054 AAAAAAAATCATAAAACACTAGAAGATTGCTATGCATCACACGGTAAATTTCTATTTTAAACTCT
65 -AAAAAAATCATAAAACACGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCT
*
68735119 TAAAAATTTATAC
129 TAAAATTTTATAC
*
68735132 TATATCTTT
1 TTTATCTTT
68735141 AATTTCGTAA
Statistics
Matches: 582, Mismatches: 123, Indels: 44
0.78 0.16 0.06
Matches are distributed among these distances:
141 5 0.01
142 262 0.45
143 199 0.34
144 2 0.00
145 4 0.01
146 6 0.01
147 4 0.01
148 54 0.09
149 46 0.08
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (141 bp):
TTTATCTTTGATTCTATAACCGACTTGCCTCGAAATTTGAATTTTAATATTTAAAAATGAAATTA
AAAAAATCATAAAACACGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTA
AAATTTTATAC
Found at i:68734857 original size:291 final size:285
Alignment explanation
Indices: 68734311--68735169 Score: 932
Period size: 291 Copynumber: 3.0 Consensus size: 285
68734301 TCGAAATTTG
* * * * *
68734311 AATTTTAATATTTAATAATTAAATTTAAAAAAAACATAAAACACAAGAAGTTTGCAATGCATCAC
1 AATTTTAATATTTAAAAATTAAA-TTAAAAAAATCAT-AAACACGAGAACTTTGCTATGCATCAC
* * *
68734376 A-TATAAATTTCCATTTTAACCTCTT-AAAAT-T-TT-ATACTTTATCTTTGATTCTATAACCGA
64 ATTATAAATTTCCATTTTAACCTCTTAAAAATATATTCTTAGTTTATCTTTGATTATATAACCGA
*
68734436 CATTGCCTTGAAATTTGAATTTTAATATTTAAAAAATGAAATTAAAAAAATCATAAAACATGAGA
129 C-TTGCCTCGAAATTTGAATTTTAATATTT-AAAAATGAAATTAAAAAAATCATAAAACATGAGA
* * *
68734501 AGTTTGCTATGCATCACATGGTAAATTTTCATTTTAAACTCTTAAATATTTAAACTTTTTCTTTA
192 AGTTTGCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAA-ATTTATACTTTATCTTTA
68734566 ATTCCATAACAGACTTC-CCTTCAAAATTCA
256 ATTCCATAACAGACTTCGCC-TCAAAATTCA
* * * * *
68734596 AGTTTTAATATTAAAAAATTAAATTAAAAAGAATCATAAACACGAGAACTTCGCTATTCATCAAA
1 AATTTTAATATTTAAAAATTAAATTAAAAA-AATCATAAACACGAGAACTTTGCTATGCATCACA
* * *
68734661 TTATAAATTTCCATTTTAACCTCTTAAAAATATATTCTTTAAGTTTTTCTTTGATTTTTTAACCG
65 TTATAAATTTCCATTTTAACCTCTTAAAAATATATTC-TT-AGTTTATCTTTGATTATATAACCG
* * * * * **
68734726 ACTTCGCCTCGACATTTGAGTTTAAATATTTAAAAATGAAATTAAAAAGATTTATATTACATGAG
128 ACTT-GCCTCGAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACATGAG
* * * * * *
68734791 AAGTTTTCCATGCATTACATGGTAAATTTCCATCTTAACCACTTAAAAGTTTATACTTTATCTTT
191 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAA-TTTATACTTTATCTTT
* * * * *
68734856 AATTCTATACCGGAGTTCGGCTCAAAATTCA
255 AATTCCATAACAGACTTCGCCTCAAAATTCA
* * * * *
68734887 AATTTCAATATTTATAAA-TAAATTTAAAACAATTAGAAGACACGAGAACTTTGCTATGCATCAC
1 AATTTTAATATTTAAAAATTAAA-TTAAAAAAATCATAA-ACACGAGAACTTTGCTATGCATCAC
* * * * * **
68734951 ATTTTAAATTTCCATTTTAACCTGTTAAAAATTTATAC-T-G--TATCTTTGATTATGTAATTGA
64 ATTATAAATTTCCATTTTAACCTCTTAAAAATATATTCTTAGTTTATCTTTGATTATATAACCGA
*
68735012 CTTTGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAAATCATAAAACACT-AG
129 C-TTGCCTCGAAATTTGAATTTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACA-TGAG
* * * *
68735076 AAGATTGCTATGCATCACACGGTAAATTTCTATTTTAAACTCTTAAAAATTTATACTATATCTTT
191 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAAACTCTT-AAAATTTATACTTTATCTTT
* * * * *
68735141 AATTTCGTAACGGAGTTCACCTCAAAATT
255 AATTCCATAACAGACTTCGCCTCAAAATT
68735170 TGAGTTTCAA
Statistics
Matches: 476, Mismatches: 80, Indels: 36
0.80 0.14 0.06
Matches are distributed among these distances:
284 29 0.06
285 183 0.38
286 17 0.04
287 2 0.00
288 2 0.00
289 1 0.00
290 31 0.07
291 210 0.44
292 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (285 bp):
AATTTTAATATTTAAAAATTAAATTAAAAAAATCATAAACACGAGAACTTTGCTATGCATCACAT
TATAAATTTCCATTTTAACCTCTTAAAAATATATTCTTAGTTTATCTTTGATTATATAACCGACT
TGCCTCGAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACATGAGAAGTT
TGCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAATTTATACTTTATCTTTAATTCC
ATAACAGACTTCGCCTCAAAATTCA
Found at i:68735354 original size:223 final size:222
Alignment explanation
Indices: 68734956--68735407 Score: 638
Period size: 223 Copynumber: 2.0 Consensus size: 222
68734946 ATCACATTTT
* * ** *
68734956 AAATTTCCATTTTAACCTGTTAAAAATTTATACTGTATCTTTGATTATGTAATTGACTTTGCCTC
1 AAATTTCCATTTTAACCTGTTAAAAATGTATACTGTATATTTGATTATGTAACCGACTTAGCCTC
*
68735021 AAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAAATCATAAAACACTAGAAGATTGCTA
66 AAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAAATCATAAAACACAAGAAGATTGCTA
* *
68735086 TGCATCACACGGTAAATTTCTATTTTAAACTCTTAAAAATTTATACTATATCT-TTAATTTCGTA
131 TGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTATATCTATT-ATTCCGTA
*
68735150 ACGGAGTTCACCTCAAAATTTGAGTTTC
195 ACGGACTTCACCTCAAAATTTGAGTTTC
* * * * * *
68735178 AAATTTTCATTTTAACCTTTTAAAAATGTATACTTTTATATTTGATTCTGTACCCGACTTAGTCT
1 AAATTTCCATTTTAACCTGTTAAAAATGTATAC-TGTATATTTGATTATGTAACCGACTTAGCCT
* *
68735243 CGAAATTTGAATTTTAATATTTAAAAATGAAATTTAAAAAAATCATAAAACACAAGAAG-TATGC
65 CAAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAAATCATAAAACACAAGAAGAT-TGC
* * * *
68735307 TATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATACTTTATCTATTATTCCGT
129 TATGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTATATCTATTATTCCGT
** *
68735372 AACGGACTTTGCCTCAATATTTGAGTTTC
194 AACGGACTTCACCTCAAAATTTGAGTTTC
68735401 AATATTT
1 AA-ATTT
68735408 AAAAATGAAG
Statistics
Matches: 202, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
222 31 0.15
223 165 0.82
224 6 0.03
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.40
Consensus pattern (222 bp):
AAATTTCCATTTTAACCTGTTAAAAATGTATACTGTATATTTGATTATGTAACCGACTTAGCCTC
AAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAAATCATAAAACACAAGAAGATTGCTA
TGCATCACACGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTATATCTATTATTCCGTAA
CGGACTTCACCTCAAAATTTGAGTTTC
Found at i:68735410 original size:143 final size:144
Alignment explanation
Indices: 68735178--68735494 Score: 374
Period size: 143 Copynumber: 2.2 Consensus size: 144
68735168 TTTGAGTTTC
* * * * * *
68735178 AAATTTTCATTTTAACCTTTTAAAAATGTATACTTTTATATTTGATTCTGTACCCGACTTAGTCT
1 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTTATATTTGATTCCGTAACCGACTTAGCCT
* * * *
68735243 CGAAATTTGAATTTTAATATTTAAAAATGAAATTTAAAAA-AATCATAAAACACAAGAAGTAT-G
66 CGAAATTTGAATTTCAATATTTAAAAATG-AAGTTAAAAAGAATCATAAAACACAACAACT-TCG
68735306 CTATGCATCACATGGT
129 CTATGCATCACATGGT
* * * *
68735322 AAATTTCCATTTTAACCTCTTAAAATTTTATAC-TTTATCTATT-ATTCCGTAACGGACTTTGCC
1 AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTTATAT-TTGATTCCGTAACCGACTTAGCC
* * * * *
68735385 TC-AATATTTGAGTTTCAATATTTAAAAATGAAGTTAAAAAGAATCATAAGACACGACCACTTCT
65 TCGAA-ATTTGAATTTCAATATTTAAAAATGAAGTTAAAAAGAATCATAAAACACAACAACTTCG
*
68735449 CTATGCATCACATTGT
129 CTATGCATCACATGGT
*
68735465 AAATTTCCATTTTAACGTCTTAAAAATTTA
1 AAATTTCCATTTTAACCTCTTAAAAATTTA
68735495 GAATATCTTA
Statistics
Matches: 147, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
142 12 0.08
143 104 0.71
144 31 0.21
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (144 bp):
AAATTTCCATTTTAACCTCTTAAAAATTTATACTTTTATATTTGATTCCGTAACCGACTTAGCCT
CGAAATTTGAATTTCAATATTTAAAAATGAAGTTAAAAAGAATCATAAAACACAACAACTTCGCT
ATGCATCACATGGT
Found at i:68735581 original size:227 final size:227
Alignment explanation
Indices: 68735297--68735721 Score: 681
Period size: 227 Copynumber: 1.9 Consensus size: 227
68735287 ATAAAACACA
*
68735297 AGAAGTATGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATACTTTATCT
1 AGAAGTATGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAGTTTATACTTTATCT
* * * *
68735362 ATTATTCCGTAACGGACTTTGCCTCAATATTTGAGTTTCAATATTTAAAAAT-GAAGTTAAAAAG
66 ATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAAG-TAAAAAG
* * *
68735426 AATCATAAGACACGACCACTTCTCTATGCATCACATTGTAAATTTCCATTTTAACGTCTTAAAAA
130 AATCATAAGACACGACAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAA
68735491 TTTAGAATATCTTAAGAAGAATAATCAGACCCG
195 TTTAGAATATCTTAAGAAGAATAATCAGACCCG
* *
68735524 AGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTTTTAAAAGTTTATACTTTATCT
1 AGAAGTATGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAGTTTATACTTTATCT
**
68735589 ATAATTCCGTATTGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAAGTAAAAAGA
66 ATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAAGTAAAAAGA
* * * * *
68735654 TTCATAATACACGAGAACTTCGCTATGCATCATATTGTAAATTTCCATTTTAACCTCTTAAAAGT
131 ATCATAAGACACGACAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAAT
68735719 TTA
196 TTA
68735722 TACTTTAACT
Statistics
Matches: 180, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
227 177 0.98
228 3 0.02
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (227 bp):
AGAAGTATGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAGTTTATACTTTATCT
ATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAAGTAAAAAGA
ATCATAAGACACGACAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAAT
TTAGAATATCTTAAGAAGAATAATCAGACCCG
Found at i:68735703 original size:143 final size:141
Alignment explanation
Indices: 68735522--68736158 Score: 731
Period size: 143 Copynumber: 4.5 Consensus size: 141
68735512 TAATCAGACC
* * *
68735522 CGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTTTTAAAAGTTTATACTTTAT
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
* * *** * * * *
68735587 CTATAATTCCGTATTGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAAGTAAAAA
66 CTTTAATTCCATAACCGAC-TTGCCTCAAAATTCGAATTTTAATATTTAAAAATTAAATTAAAAA
* *
68735652 GATTCATAATACA
130 -AATCATAAAACA
* * * * *
68735665 CGAGAACTTCGCTATGCATCATATTGTAAATTTCCATTTTAACCTCTTAAAAGTTTATACTTTAA
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
* * * *
68735730 CTTTGATTCGATAACCGACTTGACCTCAAAATTCAAATTTTAATATTTAATAATTAAATTAAAAA
66 CTTTAATTCCATAACCGACTTG-CCTCAAAATTCGAATTTTAATATTTAAAAATTAAATTAAAAA
68735795 AATCATAAAACA
130 AATCATAAAACA
* * * * *
68735807 CGAGAAGTTTGCAATACATCACA-TATAAATTTTCATTTTAACTTCTTAAAAATTTATACTTTAT
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
* * * * *
68735871 CTTTGA-TCTATAACCGACGTTGCCTCGAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAA
66 CTTTAATTCCATAACCGAC-TTGCCTCAAAATTCGAATTTTAATATTTAAAAATTAAATTAAAAA
68735935 AATCATAAAACA
130 AATCATAAAACA
* * * * * *
68735947 TGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAACCTCTTAAATATTTAAACTTTTT
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
* * * *
68736012 CTTTAATTCCATAACAGACTTCCCTTCAAAATTCGAGTTTTAATA-TTAAAAAGTTAGATTAAAA
66 CTTTAATTCCATAACCGACTTGCC-TCAAAATTCGAATTTTAATATTTAAAAA-TTAAATTAAAA
*
68736076 AGAATCATAACACA
129 A-AATCATAAAACA
* * * * * * *
68736090 CGAGAACTTCGCTATTCATCAAATTATAAATTTCCATTTTAGCCTCTTAAAAATATATACTTTAT
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
68736155 CTTT
66 CTTT
68736159 GAACTTAGCT
Statistics
Matches: 418, Mismatches: 69, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
140 80 0.19
141 96 0.23
142 68 0.16
143 174 0.42
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (141 bp):
CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
CTTTAATTCCATAACCGACTTGCCTCAAAATTCGAATTTTAATATTTAAAAATTAAATTAAAAAA
ATCATAAAACA
Found at i:68736043 original size:282 final size:285
Alignment explanation
Indices: 68735522--68736160 Score: 761
Period size: 282 Copynumber: 2.2 Consensus size: 285
68735512 TAATCAGACC
* * *
68735522 CGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTT-TTAAAAGTTTATACTTTA
1 CGAGAAGTTTGCTATACATCACAT-ATAAATTTCCATTTTAA-CTTCTTAAAAATTTATACTTTA
* * * *** * *
68735586 TCTATAATTCCGTATTGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAAGTAAAA
64 TCTTTGATTCCATAACCGACGTTGCCTCAAAATTCGAATTTCAATATTTAAAAATAAAAGTAAAA
* * * *
68735651 AGATTCATAATACACGAGAACTTCGCTATGCATCATATTGTAAATTTCCATTTTAACCTCTTAAA
129 AGAATCATAAAACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAA
* * * * *
68735716 AGTTTATACTTTAACTTTGATTCGATAACCGACTTGACCTCAAAATTCAAATTTTAATATTTAAT
194 AGTTTAAACTTTAACTTTAATTCCATAACAGACTTGACCTCAAAATTCAAATTTTAATA-TTAAA
68735781 AA-TTAAATTAAAAA-AATCATAAAACA
258 AAGTTAAATTAAAAAGAATCATAAAACA
* *
68735807 CGAGAAGTTTGCAATACATCACATATAAATTTTCATTTTAACTTCTTAAAAATTTATACTTTATC
1 CGAGAAGTTTGCTATACATCACATATAAATTTCCATTTTAACTTCTTAAAAATTTATACTTTATC
* * * * * *
68735872 TTTGA-TCTATAACCGACGTTGCCTCGAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAA-
66 TTTGATTCCATAACCGACGTTGCCTCAAAATTCGAATTTCAATATTTAAAAATAAAAGTAAAAAG
* * * *
68735935 AATCATAAAACATGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAACCTCTTAAATA
131 AATCATAAAACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAA-A
** * * *
68736000 -TTTAAACTTTTTCTTTAATTCCATAACAGACTT-CCCTTCAAAATTCGAGTTTTAATATTAAAA
195 GTTTAAACTTTAACTTTAATTCCATAACAGACTTGACC-TCAAAATTCAAATTTTAATATTAAAA
* *
68736063 AGTTAGATTAAAAAGAATCATAACACA
259 AGTTAAATTAAAAAGAATCATAAAACA
* * * * * * *
68736090 CGAGAACTTCGCTATTCATCAAATTATAAATTTCCATTTTAGCCTCTTAAAAATATATACTTTAT
1 CGAGAAGTTTGCTATACATCACA-TATAAATTTCCATTTTAACTTCTTAAAAATTTATACTTTAT
68736155 CTTTGA
65 CTTTGA
68736161 ACTTAGCTAT
Statistics
Matches: 300, Mismatches: 48, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
281 8 0.03
282 111 0.37
283 79 0.26
284 80 0.27
285 22 0.07
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (285 bp):
CGAGAAGTTTGCTATACATCACATATAAATTTCCATTTTAACTTCTTAAAAATTTATACTTTATC
TTTGATTCCATAACCGACGTTGCCTCAAAATTCGAATTTCAATATTTAAAAATAAAAGTAAAAAG
AATCATAAAACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAG
TTTAAACTTTAACTTTAATTCCATAACAGACTTGACCTCAAAATTCAAATTTTAATATTAAAAAG
TTAAATTAAAAAGAATCATAAAACA
Found at i:68736163 original size:66 final size:66
Alignment explanation
Indices: 68736093--68736226 Score: 169
Period size: 66 Copynumber: 2.0 Consensus size: 66
68736083 TAACACACGA
* * * * * *
68736093 GAACTTCGCTATTCATCAAATTATAAATTTCCATTTTAGCCTCTTAAAAATATATACTTTATCTT
1 GAACTTAGCTATGCATCAAATGATAAATTTCCATTTGAACCTCTCAAAAATATATACTTTATCTT
68736158 T
66 T
* * ** *
68736159 GAACTTAGCTATGCATCACATGGTAAATTTCCATTTGAACCTCTCAAAGTTTTATACTTTATCTT
1 GAACTTAGCTATGCATCAAATGATAAATTTCCATTTGAACCTCTCAAAAATATATACTTTATCTT
68736224 T
66 T
68736225 GA
1 GA
68736227 TTTTGTAACC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (66 bp):
GAACTTAGCTATGCATCAAATGATAAATTTCCATTTGAACCTCTCAAAAATATATACTTTATCTT
T
Found at i:68736361 original size:210 final size:209
Alignment explanation
Indices: 68735957--68736371 Score: 498
Period size: 209 Copynumber: 2.0 Consensus size: 209
68735947 TGAGAAGTTT
* * * *
68735957 GCTATGCATCACATGGTAAATTTTCATTTTAACCTCTTAAATATTTAAACTTTTTCTTTAATTCC
1 GCTATGCATCACATGGTAAATTTCCATTTGAACCTCTCAAATATTTAAACTTTATCTTTAATTCC
* * * *
68736022 ATAACAGACTTCCCTTCAAAATTCGAGTTTTAATATTAAAAAGTTAGATTAAAAAGAATCATAAC
66 ATAACAGACTTCCCTACAAAATTCGAGTTTCAATATTAAAAAGTAAAATTAAAAAGAATCATAAC
* * *
68736087 ACACGAGAACTTCGCTATTCATCAAATTATAAATTTCCATTTTAGCCTCTTAAAAATATATACTT
131 ACACAAGAACTTCGCTATACATCAAATTATAAATTTCCATTTTAACCTCTTAAAAATATATACTT
68736152 TATCTTTGAACTTA
196 TATCTTTGAACTTA
* * *
68736166 GCTATGCATCACATGGTAAATTTCCATTTGAACCTCTCAAAGT-TTTATACTTTATCTTTGATTT
1 GCTATGCATCACATGGTAAATTTCCATTTGAACCTCTCAAA-TATTTAAACTTTATCTTTAATTC
** * * *
68736230 TGTAACCGACTTCGCC-ACAAAATTCGTGTTTCAATATTTAGAAA-TGAAAATTAAAAA-ATATC
65 CATAACAGACTTC-CCTACAAAATTCGAGTTTCAATA-TTAAAAAGT-AAAATTAAAAAGA-ATC
* * * * * * * *
68736292 ATAAGACACAAGAACTTCGCTCTACTTCACATTGTAAATTTTCC-TTTTAACCTTTTAAAAGTTT
126 ATAACACACAAGAACTTCGCTATACATCAAATTATAAA-TTTCCATTTTAACCTCTTAAAAATAT
68736356 ATACTTTATCTTTGAA
190 ATACTTTATCTTTGAA
68736372 TCTGTAACCG
Statistics
Matches: 173, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
209 84 0.49
210 84 0.49
211 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (209 bp):
GCTATGCATCACATGGTAAATTTCCATTTGAACCTCTCAAATATTTAAACTTTATCTTTAATTCC
ATAACAGACTTCCCTACAAAATTCGAGTTTCAATATTAAAAAGTAAAATTAAAAAGAATCATAAC
ACACAAGAACTTCGCTATACATCAAATTATAAATTTCCATTTTAACCTCTTAAAAATATATACTT
TATCTTTGAACTTA
Found at i:68736509 original size:143 final size:143
Alignment explanation
Indices: 68736159--68738896 Score: 2047
Period size: 143 Copynumber: 19.2 Consensus size: 143
68736149 CTTTATCTTT
* * * **
68736159 GAACTTAGCTATGCATCACATGGTAAATTTCCATTTGAACCTCTCAAAGTTTTATACTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * *
68736224 TGATTTTGTAACCGACTTCGCCACAAAATTCGTGTTTCAATATTTAGAAATGAAAATTAAAAA-A
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATG-AAATTAAAAAGA
*
68736288 TATCATAAGACACAA
130 -ATCATAAGACACGA
* * * * * *
68736303 GAACTTCGCTCTACTTCACATTGTAAATTTTCC-TTTTAACCTTTTAAAAGTTTATACTTTATCT
1 GAACTTCGCTATGCATCACATGGTAAA-TTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * *
68736367 TTGAATCTGTAACCGACTTCGCCACGAAATTTGAGTTTTAATATTTACAAATGAAATTAAAAAGA
65 TTGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
*
68736432 TTCATATA-ACACGA
130 ATCATA-AGACACGA
* ** * *
68736446 GAAGTTTTCCATGCATCACATGGTAAATTTCCATTTTAACCACTTAAAAATTTATACTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * * * *
68736511 TAATTTTGTAACGGAGTTCGCCTCAAAATTCGAGTTTCAATATTTATAAAT-AACTTTAAAACAA
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
* *
68736575 TCAGAAGACACAA
131 TCATAAGACACGA
* ** ** * *
68736588 GAACTTTGCTATGCATCACATTTTAAATTTCCATTTTAACCAGTCAAAAATTTATACTGTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * *
68736653 TGATTTTGTAACCGACTTTGCCTCGAAATTCAAATTTTC-ATATTTAAAAATGAAATTTAAAAA-
66 TGATTCTGTAACCGACTTCGCCTCAAAATTC-GAGTTTCAATATTTAAAAATGAAA-TTAAAAAG
* * *
68736716 TATCATAAAACACTA
129 AATCATAAGACACGA
* * *
68736731 GAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCAT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * * *
68736796 TCATTTTGTAACGGAGTTCGCCGCAAAATTCGAGTTTCAATAGTGAAAAATGAAATTAAAAAGAA
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
*
68736861 TCATAAGACAAGA
131 TCATAAGACACGA
* * * ** * ** * * *
68736874 GAAGTTTGTTATGTGTCACTTGGTAAATTTCTGTTTTAACCTTTTAAAAAATTATACTTTAT-AT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * * * * *
68736938 T-ATTTTGTACCCAACTTAGTCTCGAAATTTGAATTTTAATATTTAAAAATGAAATTAAATAA-A
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAA-AAGA
** *
68737001 AAAATTAAAACACGA
130 ATCA-TAAGACACGA
* * * * *
68737016 GAAGTTTGCTATGCATCACATGGTAAATTTCTATTTTAACCTCTTAAAAATTTATAATTTATCTA
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * * * *
68737081 TAATTCCGTAACGGAATTTGCCTTAAAATTCGAGTTTCAATGTTTAAAAATGAAGTTAAAAAGAA
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
68737146 TCATAAGACACGA
131 TCATAAGACACGA
* * * * * * *
68737159 GCACTTCTCTATGCATCACATTGTAAATTTCCATTTTAACTTATTAAAAATTTACACTATATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* ** ** * * * ** * * * **
68737224 AAGAAAAACAATAAAACCCGAGAAGTTTGCTATGCATCATATGGTAAATTTCCAT-TTT-AACCT
66 -TG--ATTC--TGTAA-CC--G-ACTTCGC-CT-CAAAAT-TCG--AGTTTCAATATTTAAAAAT
* * * *** *
68737287 ----TTTAAAA-ATTTATACTTCATCTA
117 GAAATTAAAAAGAATCATAAGACA-CGA
* * * * ** * * * * * *
68737310 TAATTTCG-TAACGGA-C-TTTGTCTCAAAATTCTAGTTTCAA--TATATAAAAATGTA-A--TT
1 GAACTTCGCT-ATGCATCACATG-GT-AAATTTCCA-TTTTAACCTCT-TAAAAATTTATACTTT
**** * * * * * * * *
68737367 A-AAAAGATTCATATTACACGAGAACTTTGCTATGCATCATATT-GTAAATTTTAATATTTAATA
61 ATCTTTGATTC-T-GTA-AC-CG-ACTTCGC-CT-CA--AAATTCG--AGTTTCAATATTTAAAA
* * *
68737430 TTTAAATTAAAAAGAATCATAAGACATGA
115 ATGAAATTAAAAAGAATCATAAGACACGA
* * * * *
68737459 GAGCTTCGCTATGCATCACATGGTAAATTTCTATTTGAACCTCTCAAAATTTTATACTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * *
68737524 TGATTCTGTAACCAACTTTGCCACAAGATTCGAGTTTCAATATTTAGAAATGAAAATTAAAAA-A
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATG-AAATTAAAAAGA
*
68737588 TATCATAAGACACAA
130 -ATCATAAGACACGA
* * * * * * *
68737603 GAACTTCGCTCTACTTCACATTGTAAATTTTCATTTTAACCTTTTAAAAGTTTATACTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * *
68737668 TGAATCTGTAACCGACTTCGCCACGAAATTTGAGTTTTAATATTTAAAAATGAAATTTTAAAAA-
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAA--TTAAAAAG
**
68737732 ATATCATAAGACATAA
129 A-ATCATAAGACACGA
* * * * * * *
68737748 TAACTTCACTATGCATCACATGGTAAATATCGATTGTAACCTCTTTAAATTTTATACTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * *
68737813 TGATTCCGTAA-CAACTTCGCCTCAAAATTCAAGTTTCAATATTTAAAAATGAAATTAAAAAGAT
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
68737877 TCATATA-ACACGA
131 TCATA-AGACACGA
* ** * * * *
68737890 GAAGTTTTCCATGCATCACATGGTATATTTCCAATTTAACCTCTTAAAACTTTATACTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * *
68737955 TAATTCCGTAA-TGAACTTCGCCTCAAAGTTCGAGTTTCAATATTT-AAAATAAAATTAAAAAGA
66 TGATTCTGTAACCG-ACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
*
68738018 ATCATAAGACATGA
130 ATCATAAGACACGA
* * * * * * * * *
68738032 GAACTTCACTACGCATCACATTGTAAATTACCACTTTAACCTCTTAACACTTTATATTTTAACTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * ** * * * *
68738097 TAATTCCGTAATGGACTTAGCCTTAAAGTTTGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
68738162 TCATAAGACACGA
131 TCATAAGACACGA
* * * * * *
68738175 GAACTTCACTAAGCATCACATTGTAAATTACCATTTCAACCTCTTAAAAATTTATATTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * *
68738240 TAATTCTGTGACGGA-TTGTGCCTCAAAATT-GAGTTTC-A-A--T----AT----TTAAAAAGA
66 TGATTCTGTAACCGACTT-CGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
* *
68738291 ATCATAAAACACAA
130 ATCATAAGACACGA
** *
68738305 GAACTTATCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * * **
68738370 TGATTCTATAACTGACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAAT--AA--AAAAATTA
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
*
68738431 TCATAAAACACGA
131 TCATAAGACACGA
* * * * * * *
68738444 GAACTTCACTATGCATCAAATGGTAAATTTCAATTTTAACCTCATAAAACTTTATACTATATCTA
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * *
68738509 TGATTTCTGTAGCCGAATTTGCCT-ATAAATTCGAGTTTTAATATTTAAAAATGAAATTTTAAAA
66 TGA-TTCTGTAACCGACTTCGCCTCA-AAATTCGAGTTTCAATATTTAAAAATGAAA--TTAAAA
**
68738573 A-ATATCATAAGACATAA
127 AGA-ATCATAAGACACGA
* * * * * * *
68738590 TAACTTCACTATGCATCACATGGTAAATATCGATTGTAACCTCTTTAAATTTTATACTTTATCTT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * *
68738655 TGATTCCGTAA-CAACTTCGCCTCAAAATTCAAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
66 TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
*
68738719 TCATAAGACACAA
131 TCATAAGACACGA
* * * * *
68738732 GAACTTCGCTCTGCATCACATTGTAAATTTCTATTTTAACCTATTAAAAATTTATACTTTATATT
1 GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * *
68738797 TGATTCCGT-ACCGAATTTCGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAATA
66 TGATTCTGTAACCG-ACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
* *
68738861 ATCATAAAACACAA
130 ATCATAAGACACGA
* * *
68738875 GAAGTTTGCCATGCATCACATG
1 GAACTTCGCTATGCATCACATG
68738897 AATCTGTTAC
Statistics
Matches: 2077, Mismatches: 424, Indels: 187
0.77 0.16 0.07
Matches are distributed among these distances:
130 102 0.05
131 7 0.00
132 1 0.00
133 1 0.00
134 2 0.00
135 1 0.00
138 1 0.00
139 79 0.04
140 42 0.02
141 52 0.03
142 489 0.24
143 614 0.30
144 353 0.17
145 101 0.05
146 80 0.04
148 16 0.01
149 32 0.02
150 29 0.01
151 36 0.02
152 15 0.01
153 6 0.00
154 3 0.00
155 5 0.00
156 3 0.00
157 7 0.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.37
Consensus pattern (143 bp):
GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
TGATTCTGTAACCGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
TCATAAGACACGA
Found at i:68736706 original size:285 final size:283
Alignment explanation
Indices: 68736159--68738895 Score: 1973
Period size: 285 Copynumber: 9.6 Consensus size: 283
68736149 CTTTATCTTT
* * * * **
68736159 GAACTTAGCTATGCATCACATGGTAAATTTCCATTTGAACCTCTCAAAGTTTTATACTTTATCTT
1 GAACTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * *
68736224 TGATTTTGTAACCGACTTCGCCACAAAATTCGTGTTTCAATATTTAGAAATGAAAATTAAAAA-A
66 TAATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATG-AAATTAAAAAGA
* * * *
68736288 TATCATAAGACACAAGAACTTCGCTCTACTTCACATTGTAAATTTTCC-TTTTAACCTTTTAAAA
130 -ATCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAA-TTTCCATTTTAACCTCTTAAAA
* * * * * * * *
68736352 GTTTATACTTTATCTTTGAATCTGTAACCGACTTCGCCACGAAATTTGAGTTTTAATATTTACAA
193 ATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAA-TTCAATTTTCATATTTAAAA
68736417 ATGAAATTAAAAAGATTCATATAACACGA
257 ATGAAATTAAAAA-ATTCATA-AACACGA
* * *
68736446 GAAGTTTTCCATGCATCACATGGTAAATTTCCATTTTAACCACTTAAAAATTTATACTTTATCTT
1 GAACTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * *
68736511 TAATTTTGTAACGGAGTTCGCCTCAAAATTCGAGTTTCAATATTTATAAAT-AACTTTAAAACAA
66 TAATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
* * * ** *
68736575 TCAGAAGACACAAGAACTTTGCTATGCATCACATTTTAAATTTCCATTTTAACCAGTCAAAAATT
131 TCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATT
* *
68736640 TATACTGTATCTTTGATTTTGTAACCGACTTTGCCTCGAAATTCAAATTTTCATATTTAAAAATG
196 TATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTC-AATTTTCATATTTAAAAATG
* *
68736705 AAATTTAAAAATATCATAAAACACTA
260 AAATTAAAAAAT-TCAT-AAACACGA
* * *
68736731 GAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCAT
1 GAACTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * *
68736796 TCATTTTGTAACGGAGTTCGCCGCAAAATTCGAGTTTCAATAGTGAAAAATGAAATTAAAAAGAA
66 TAATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
* * * ** ** *
68736861 TCATAAGACA-AGAGAAGTTTGTTATGTGTCAC-TTGGTAAATTTCTGTTTTAACCTTTTAAAAA
131 TCATAAGACACA-AGAACTTCGCTATGCATCACATT-GTAAATTTCCATTTTAACCTCTTAAAAA
* * * * * * * * *
68736924 ATTATACTTTAT-ATT-ATTTTGTACCCAACTTAGTCTCGAAATTTGAATTTTAATATTTAAAAA
194 TTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAA-TTCAATTTTCATATTTAAAAA
***
68736987 TGAAATTAAATAAAAAAATTAAAACACGA
258 TGAAATTAAA-AAATTCA-T-AAACACGA
* * * * *
68737016 GAAGTTTGCTATGCATCACATGGTAAATTTCTATTTTAACCTCTTAAAAATTTATAATTTATCTA
1 GAACTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * *
68737081 TAATTCCGTAACGGAATTTGCCTTAAAATTCGAGTTTCAATGTTTAAAAATGAAGTTAAAAAGAA
66 TAATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
* * * * *
68737146 TCATAAGACACGAGCACTTCTCTATGCATCACATTGTAAATTTCCATTTTAACTTATTAAAAATT
131 TCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATT
* * * ** ** * * *
68737211 TACACTATATCTTAAGAAAAACAATAAAACCCGAGAAGTTTGCTATGCATC-ATATGGTAAATTT
196 TATACTTTATCTT-TG--ATTC--TGTAA-CC--G-ACTTTGC----C-TCGAAAT--TCAATTT
* ** * * ** *
68737275 CCAT-TTT-AACCT----TTTAAAAATTTATACTTCATCTA
245 TCATATTTAAAAATGAAATTAAAAAATTCATA-AACA-CGA
* ** * * ** * * * * * *
68737310 TAA-TTTCGTAACGGA-C-TTTGTCTCAAAATTCTAGTTTCAA--TATATAAAAATGTA-A--TT
1 GAACTTT-GCCATGCATCACATG-GT-AAATTTCCA-TTTTAACCTCT-TAAAAATTTATACTTT
*** * * * * * * *
68737367 A--AAAAGATTCATATTACACGAGAACTTTGCTATGCATCATATT-GTAAATTTTAATATTTAAT
61 ATCTTTA-ATTC-T-GTA-ACG-G-ACTTCGC-CT-CA--AAATTCG--AGTTTCAATATTTAAA
* * ** * * *
68737429 ATTTAAATTAAAAAGAATCATAAGACATGAGAGCTTCGCTATGCATCACATGGTAAATTTCTATT
114 AATGAAATTAAAAAGAATCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATT
* * * * * * *
68737494 TGAACCTCTCAAAATTTTATACTTTATCTTTGATTCTGTAACCAACTTTGCCAC-AAGATTCGAG
179 TTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAA-ATTCAAT
* *
68737558 TTTCAATATTTAGAAATGAAAATTAAAAAATATCATAAGACACAA
243 TTTC-ATATTTAAAAATG-AAATTAAAAAAT-TCATAA-ACACGA
* * * * * * *
68737603 GAACTTCGCTC-TACTTCACATTGTAAATTTTCATTTTAACCTTTTAAAAGTTTATACTTTATCT
1 GAACTTTGC-CATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * *
68737667 TTGAA-TCTGTAACCGACTTCGCCACGAAATTTGAGTTTTAATATTTAAAAATGAAATTTTAAAA
65 TT-AATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAA--TTAAAA
* * * * * * * *
68737731 A-ATATCATAAGACATAATAACTTCACTATGCATCACATGGTAAATATCGATTGTAACCTCTTTA
127 AGA-ATCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAA
* * * * * *
68737795 AATTTTATACTTTATCTTTGATTCCGTAA-CAACTTCGCCTCAAAATTCAAGTTTCAATATTTAA
191 AAATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTCAATTTTC-ATATTTAA
68737859 AAATGAAATTAAAAAGATTCATATAACACGA
255 AAATGAAATTAAAAA-ATTCATA-AACACGA
* * * * *
68737890 GAAGTTTTCCATGCATCACATGGTATATTTCCAATTTAACCTCTTAAAACTTTATACTTTATCTT
1 GAACTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * *
68737955 TAATTCCGTAATGAACTTCGCCTCAAAGTTCGAGTTTCAATATTT-AAAATAAAATTAAAAAGAA
66 TAATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
** * * * * * *
68738019 TCATAAGACATGAGAACTTCACTACGCATCACATTGTAAATTACCACTTTAACCTCTTAACACTT
131 TCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATT
* * * * ** * * ** *
68738084 TATATTTTAACTTTAATTCCGTAATGGACTTAGCCT-TAAAGTTTGAGTTTCAATATTTAAAAAT
196 TATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAA-TTCAATTTTC-ATATTTAAAAAT
*
68738148 GAAATTAAAAAGAATCATAAGACACGA
259 GAAATTAAAAA-ATTCATAA-ACACGA
** * * * * * *
68738175 GAACTTCACTAAGCATCACATTGTAAATTACCATTTCAACCTCTTAAAAATTTATATTTTATCTT
1 GAACTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* *
68738240 TAATTCTGTGACGGA-TTGTGCCTCAAAATT-GAGTTTC-A-A--T----AT----TTAAAAAGA
66 TAATTCTGTAACGGACTT-CGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
* **
68738291 ATCATAAAACACAAGAACTTATCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAAT
130 ATCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAAT
* * *
68738356 TTATACTTTATCTTTGATTCTATAACTGACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAAT
195 TTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTC-AATTTTCATATTTAAAAAT
*
68738421 --AA--AAAAATTATCATAAAACACGA
259 GAAATTAAAAAAT-TCAT-AAACACGA
** * * * * * *
68738444 GAACTTCACTATGCATCAAATGGTAAATTTCAATTTTAACCTCATAAAACTTTATACTATATCTA
1 GAACTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT-
* * * * * * *
68738509 TGATTTCTGTAGCCGAATTTGCCT-ATAAATTCGAGTTTTAATATTTAAAAATGAAATTTTAAAA
65 TTAATTCTGTAACGGACTTCGCCTCA-AAATTCGAGTTTCAATATTTAAAAATGAAA--TTAAAA
* * * * * * * *
68738573 A-ATATCATAAGACATAATAACTTCACTATGCATCACATGGTAAATATCGATTGTAACCTCTTTA
127 AGA-ATCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAA
* * * * * *
68738637 AATTTTATACTTTATCTTTGATTCCGTAA-CAACTTCGCCTCAAAATTCAAGTTTCAATATTTAA
191 AAATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTCAATTTTC-ATATTTAA
* *
68738701 AAATGAAATTAAAAAGAATCATAAGACACAA
255 AAATGAAATTAAAAA-ATTCATAA-ACACGA
* * * * *
68738732 GAACTTCGCTC-TGCATCACATTGTAAATTTCTATTTTAACCTATTAAAAATTTATACTTTATAT
1 GAACTTTGC-CATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * * * * *
68738796 TTGATTCCGTACCGAATTTCGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAATA
65 TTAATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
* * * *
68738861 ATCATAAAACACAAGAAGTTTGCCATGCATCACAT
130 ATCATAAGACACAAGAACTTCGCTATGCATCACAT
68738896 GAATCTGTTA
Statistics
Matches: 1938, Mismatches: 392, Indels: 242
0.75 0.15 0.09
Matches are distributed among these distances:
269 70 0.04
270 23 0.01
271 10 0.01
272 1 0.00
273 108 0.06
274 7 0.00
275 1 0.00
277 2 0.00
279 2 0.00
280 1 0.00
282 1 0.00
283 6 0.00
284 181 0.09
285 679 0.35
286 90 0.05
287 276 0.14
288 111 0.06
289 91 0.05
290 6 0.00
291 9 0.00
292 18 0.01
293 44 0.02
294 47 0.02
295 21 0.01
296 9 0.00
297 5 0.00
298 2 0.00
299 10 0.01
300 97 0.05
301 10 0.01
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.37
Consensus pattern (283 bp):
GAACTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
TAATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAA
TCATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATT
TATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTCAATTTTCATATTTAAAAATGA
AATTAAAAAATTCATAAACACGA
Found at i:68737026 original size:428 final size:427
Alignment explanation
Indices: 68736159--68738895 Score: 1500
Period size: 428 Copynumber: 6.4 Consensus size: 427
68736149 CTTTATCTTT
* * **
68736159 GAACTTAGCTATGCATCACATGGTAAATTTCCATTTGAACCTCTCAAAGTTTTATACTTTATCTT
1 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTCAAAAATTTATACTTTATCTT
* * * * *
68736224 TGATTTTGTAACCGACTTCGCCACAAAATTCGTGTTTCAATATTTAGAAATGAAAATTAAAAAAT
66 TGATTTTGTAACCGACTTTGCCTCAAAATTCAT-TTTCAATATTTAAAAATG-AAATTTAAAAAT
* * * * * *
68736289 ATCATAAGACACAAGAACTTCGCTCTACTTCACATTGTAAATTTTCC-TTTTAACCTTTTAAAAG
129 ATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAA-TTTCCATTTTAACCTATTAAAAA
* * * * * * * *
68736353 TTTATACTTTATCTTTGAATCTGTAACCGACTTCGCCACGAAATTTGAGTTTTAATATTTACAAA
193 TTTATACTTTATCATTCAATCTGTAACCGACTTCGCCACAAAATTCGAGTTTCAATAGTGAAAAA
* *
68736418 TGAAATTAAAAAGATTCATATAACACGAGAAGTTTTCCATGCATCACATGGTAAATTTCCATTTT
258 TGAAATTAAAAAGAATCATATAACAAGAGAAGTTTTCCATGCATCACATGGTAAATTTCCATTTT
* * ** * * *
68736483 AACCACTTAAAAATTTATACTTTATCTTTAATTTTGTAACGGAGTTCGCCTCAAAATTCGAGTTT
323 AACCACTTAAAAAATTATACTTTATCATTAATTTTGTAACCAACTTAGCCTCAAAATTCGAATTT
* * *
68736548 CAATATTTATAAATAACTTTAAAACAATCAGAAGACACAA
388 CAATATTTAAAAATAAATTTAAAAAAATCAGAAGACACAA
** ** *
68736588 GAACTTTGCTATGCATCACATTTTAAATTTCCATTTTAACCAGTCAAAAATTTATACTGTATCTT
1 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTCAAAAATTTATACTTTATCTT
*
68736653 TGATTTTGTAACCGACTTTGCCTCGAAATTCAAATTTTC-ATATTTAAAAATGAAATTTAAAAAT
66 TGATTTTGTAACCGACTTTGCCTCAAAATTC--ATTTTCAATATTTAAAAATGAAATTTAAAAAT
* * * * *
68736717 ATCATAAAACACTAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAAT
129 ATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTATTAAAAAT
* * * * *
68736782 TTATACTTTATCATTCATTTTGTAACGGAGTTCGCCGCAAAATTCGAGTTTCAATAGTGAAAAAT
194 TTATACTTTATCATTCAATCTGTAACCGACTTCGCCACAAAATTCGAGTTTCAATAGTGAAAAAT
* ** * **
68736847 GAAATTAAAAAGAATCATA-AGACAAGAGAAGTTTGT-TATGTGTCACTTGGTAAATTTCTGTTT
259 GAAATTAAAAAGAATCATATA-ACAAGAGAAGTTT-TCCATGCATCACATGGTAAATTTCCATTT
** * * * *
68736910 TAACCTTTTAAAAAATTATACTTTAT-ATT-ATTTTGTACCCAACTTAGTCTCGAAATTTGAATT
322 TAACCACTTAAAAAATTATACTTTATCATTAATTTTGTAACCAACTTAGCCTCAAAATTCGAATT
* * *
68736973 TTAATATTTAAAAATGAAATTAAATAAAAAAATTA-AA-ACACGA
387 TCAATATTTAAAAAT-AAATT---TAAAAAAATCAGAAGACACAA
* * * * *
68737016 GAAGTTTGCTATGCATCACATGGTAAATTTCTATTTTAACCTCTTAAAAATTTATAATTTATCTA
1 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTCAAAAATTTATACTTTATCTT
* ** * * * * * * *
68737081 TAATTCCGTAACGGAATTTGCCTTAAAATTCGAGTTTCAATGTTTAAAAATG-AAGTTAAAAAGA
66 TGATTTTGTAACCGACTTTGCCTCAAAATTC-ATTTTCAATATTTAAAAATGAAATTTAAAAA-T
* * *
68737145 ATCATAAGACACGAGCACTTCT-CTATGCATCACATTGTAAATTTCCATTTTAACTTATTAAAAA
129 ATCATAAGACACAAGAACTT-TGCTATGCATCACATTGTAAATTTCCATTTTAACCTATTAAAAA
* * **** ** *** * ** * ** *
68737209 TTTACACTATATC-TT-AA-GAAAAACAATAAAAC-CCGAGAAGTTTGCTATGCATCATATGGT-
193 TTTATACTTTATCATTCAATCTGTAAC-CGACTTCGCC-ACAAAATT-CGA-GTTTCA-ATAGTG
* * * ** * * ** * * *
68737269 AAATTTCCATTTTAACCTTTTAAA-AAT-TTATACTTCATCTATAA--TTT-C--GTAACGGACT
253 AAA-----A-ATGAA-ATTAAAAAGAATCATATA--ACA-AGAGAAGTTTTCCATGCATC--AC-
* * * * * * * ** * *
68737327 TTGTCTCAAAATTCTAGTTT---CAATATATAAAAATGTA-A-TTAAAAAGATTCA-TAT-TACA
305 ATG-GT-AAATTTCCATTTTAACCACT-TA-AAAAAT-TATACTT--TATCATTAATTTTGTA-A
* * * * * **
68737385 CGAGAACTTTGCTATGCATCATATT-GTAAATTTTAATATTTAATATTTAAA-TTAAAAAGAATC
362 C--CAACTTAGC-CT-CA--AAATTCG--AATTTCAATATTTAA-AAATAAATTTAAAAA-AATC
* **
68737448 ATAAGACATGA
417 AGAAGACACAA
* * * * *
68737459 GAGCTTCGCTATGCATCACATGGTAAATTTCTATTTGAACCTCTCAAAATTTTATACTTTATCTT
1 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTCAAAAATTTATACTTTATCTT
* * * * * * *
68737524 TGATTCTGTAACCAACTTTGCCACAAGATTCGAGTTTCAATATTTAGAAATGAAAATTAAAAAAT
66 TGATTTTGTAACCGACTTTGCCTCAAAATTC-ATTTTCAATATTTAAAAATG-AAATTTAAAAAT
* * * * * * *
68737589 ATCATAAGACACAAGAACTTCGCTCTACTTCACATTGTAAATTTTCATTTTAACCTTTTAAAAGT
129 ATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTATTAAAAAT
* * * * * * *
68737654 TTATACTTTATCTTTGAATCTGTAACCGACTTCGCCACGAAATTTGAGTTTTAATATTTAAAAAT
194 TTATACTTTATCATTCAATCTGTAACCGACTTCGCCACAAAATTCGAGTTTCAATAGTGAAAAAT
* * ** * * *
68737719 GAAATTTTAAAAA-ATATCATA-AGACATA-ATAACTTCACTATGCATCACATGGTAAATATCGA
259 GAAA--TTAAAAAGA-ATCATATA-ACA-AGAGAAGTTTTCCATGCATCACATGGTAAATTTCCA
* * * ** * * ** *
68737781 TTGTAACCTCTTTAAATTTTATACTTTATCTTTGATTCCGTAA-CAACTTCGCCTCAAAATTC-A
319 TTTTAACCACTTAAAAAATTATACTTTATCATTAATTTTGTAACCAACTTAGCCTCAAAATTCGA
* * *
68737844 AGTTTCAATATTTAAAAATGAAA-TTAAAAAGATTCATATA-ACACGA
384 A-TTTCAATATTTAAAAAT-AAATTTAAAAA-AATCAGA-AGACACAA
* * * * * * *
68737890 GAAGTTTTCCATGCATCACATGGTATATTTCCAATTTAACCTCTTAAAACTTTATACTTTATCTT
1 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTCAAAAATTTATACTTTATCTT
* ** * * * * *
68737955 TAATTCCGTAA-TGAACTTCGCCTCAAAGTTCGAGTTTCAATATTT-AAAAT-AAAATTAAAAAG
66 TGATTTTGTAACCG-ACTTTGCCTCAAAATTC-ATTTTCAATATTTAAAAATGAAATTTAAAAA-
* ** ** * * * * * *
68738017 AATCATAAGACATGAGAACTTCACTACGCATCACATTGTAAATTACCACTTTAACCTCTTAACAC
128 TATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTATTAAAAA
* * * * ** * ** * * * *
68738082 TTTATATTTTAAC-TTTAATTCCGTAATGGACTTAGCCTTAAAGTTTGAGTTTCAATATTTAAAA
193 TTTATACTTTATCATTCAA-TCTGTAACCGACTTCGCCACAAAATTCGAGTTTCAATAGTGAAAA
* * ** * * * *
68738146 ATGAAATTAAAAAGAATCATA-AGACACGAGAACTTCACTAAGCATCACATTGTAAATTACCATT
257 ATGAAATTAAAAAGAATCATATA-ACAAGAGAAGTTTTCCATGCATCACATGGTAAATTTCCATT
* * * * * * * ** * *
68738210 TCAACCTCTTAAAAATTTATATTTTATCTTTAATTCTGTGACGGA-TTGTGCCTCAAAATT-GAG
321 TTAACCACTTAAAAAATTATACTTTATCATTAATTTTGTAACCAACTT-AGCCTCAAAATTCGAA
* *
68738273 TTTCAATATTTAAAAA-GAA--T-----CAT-A-AA-ACACAA
385 TTTCAATATTTAAAAATAAATTTAAAAAAATCAGAAGACACAA
* *
68738305 GAACTTAT-CTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
1 GAACTT-TGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTCAAAAATTTATACTTTATCT
* * * * *
68738369 TTGATTCTATAACTGACTTTGCCTCGAAATTCGAATTTT-AATATTTAAAAAT-AAA---AAAAT
65 TTGATTTTGTAACCGACTTTGCCTCAAAATTC--ATTTTCAATATTTAAAAATGAAATTTAAAAA
* * ** * * *
68738429 TATCATAAAACACGAGAACTTCACTATGCATCAAATGGTAAATTTCAATTTTAACCTCA-TAAAA
128 TATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCT-ATTAAAA
* * * * * * * * * * *
68738493 CTTTATACTATATC-TATGATTTCTGTAGCCGAATTTGCCTA-TAAATTCGAGTTTTAATATTTA
192 ATTTATACTTTATCAT-TCA-ATCTGTAACCGACTTCGCC-ACAAAATTCGAGTTTCAATAGTGA
* * ** *
68738556 AAAATGAAATTTTAAAAA-ATATCATA-AGACATA-ATAACTTCACTATGCATCACATGGTAAAT
254 AAAATGAAA--TTAAAAAGA-ATCATATA-ACA-AGAGAAGTTTTCCATGCATCACATGGTAAAT
* * * * * ** * * ** *
68738618 ATCGATTGTAACCTCTTTAAATTTTATACTTTATCTTTGATTCCGTAA-CAACTTCGCCTCAAAA
314 TTCCATTTTAACCACTTAAAAAATTATACTTTATCATTAATTTTGTAACCAACTTAGCCTCAAAA
*
68738682 TTC-AAGTTTCAATATTTAAAAATGAAA-TTAAAAAGAATCATAAGACACAA
379 TTCGAA-TTTCAATATTTAAAAAT-AAATTTAAAAA-AATCAGAAGACACAA
* * * * * * *
68738732 GAACTTCGCTCTGCATCACATTGTAAATTTCTATTTTAACCTATTAAAAATTTATACTTTATATT
1 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTCAAAAATTTATACTTTATCTT
** * *
68738797 TGATTCCGT-ACCGAATTTCGCCTCAAAATTTGAATTTT-AATATTTAAAAATGAAA-TTAAAAA
66 TGATTTTGTAACCGACTTT-GCCTCAAAA-TT-CATTTTCAATATTTAAAAATGAAATTTAAAAA
* * *
68738859 TAATCATAAAACACAAGAAGTTTGCCATGCATCACAT
128 T-ATCATAAGACACAAGAACTTTGCTATGCATCACAT
68738896 GAATCTGTTA
Statistics
Matches: 1790, Mismatches: 395, Indels: 244
0.74 0.16 0.10
Matches are distributed among these distances:
412 64 0.04
413 45 0.03
414 14 0.01
415 191 0.11
416 16 0.01
417 3 0.00
418 2 0.00
424 3 0.00
425 8 0.00
426 54 0.03
427 227 0.13
428 387 0.22
429 208 0.12
430 26 0.01
431 157 0.09
432 5 0.00
433 8 0.00
434 18 0.01
435 16 0.01
436 25 0.01
437 6 0.00
438 22 0.01
439 24 0.01
440 18 0.01
441 11 0.01
442 3 0.00
443 115 0.06
444 88 0.05
445 13 0.01
446 8 0.00
447 5 0.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.37
Consensus pattern (427 bp):
GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTCAAAAATTTATACTTTATCTT
TGATTTTGTAACCGACTTTGCCTCAAAATTCATTTTCAATATTTAAAAATGAAATTTAAAAATAT
CATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTATTAAAAATTT
ATACTTTATCATTCAATCTGTAACCGACTTCGCCACAAAATTCGAGTTTCAATAGTGAAAAATGA
AATTAAAAAGAATCATATAACAAGAGAAGTTTTCCATGCATCACATGGTAAATTTCCATTTTAAC
CACTTAAAAAATTATACTTTATCATTAATTTTGTAACCAACTTAGCCTCAAAATTCGAATTTCAA
TATTTAAAAATAAATTTAAAAAAATCAGAAGACACAA
Found at i:68737414 original size:229 final size:229
Alignment explanation
Indices: 68736998--68737667 Score: 650
Period size: 229 Copynumber: 3.0 Consensus size: 229
68736988 GAAATTAAAT
*
68736998 AAAAAAATTAAAACACGAGAAGTTTGCTATGCATCACATGGTAAATTTCTATTTTAACCTCTTAA
1 AAAAAAATTAAAACACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAA
* * * *
68737063 AAATTTATAATTTATCTATAATTCCGTAACGGAATTTGCCTTAAAATTCGAGTTTCAATGTTTAA
66 AAATTTATAATTCATCTATAATTCCGTAACGGAATTTGCCTCAAAATTCGAGTTTCAATATATAA
*
68737128 AAATGAAGTTAAAAAGAATCATAAGACACGAGCACTTCTCTATGCATCACATTGTAAATTTCCAT
131 AAATGAAGTTAAAAAGAATCATAAGACACGAGAACTTCTCTATGCATCACATTGTAAATTTCCAT
68737193 TTTAACTTATTAAAAATTTACACTATATCTTAAG
196 TTTAACTTATTAAAAATTTACACTATATCTTAAG
* * *
68737227 AAAAACAA-TAAAACCCGAGAAGTTTGCTATGCATCATATGGTAAATTTCCATTTTAACCTTTTA
1 AAAAA-AATTAAAACACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTA
* * * * *
68737291 AAAATTTATACTTCATCTATAATTTCGTAACGGACTTTGTCTCAAAATTCTAGTTTCAATATATA
65 AAAATTTATAATTCATCTATAATTCCGTAACGGAATTTGCCTCAAAATTCGAGTTTCAATATATA
* ** *
68737356 AAAATGTAA-TTAAAAAGATTCATATTACACGAGAACTT-TGCTATGCATCATATTGT-AA----
130 AAAATG-AAGTTAAAAAGAATCATAAGACACGAGAACTTCT-CTATGCATCACATTGTAAATTTC
* *
68737414 -ATTTTAA--TATTTAATATTT--A--A-A--TT-A-
193 CATTTTAACTTATTAAAAATTTACACTATATCTTAAG
* * * * * *
68737439 AAAAGAATCATAAGACATGAG-AGCTTCGCTATGCATCACATGGTAAATTTCTATTTGAACCTCT
1 AAAAAAAT--TAAAACACGAGAAG-TTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCT
* * * * * * * * * *
68737503 CAAAATTTTATACTTTATCTTTGATTCTGTAAC-CAACTTTGCCACAAGATTCGAGTTTCAATAT
63 TAAAAATTTATAATTCATCTATAATTCCGTAACGGAA-TTTGCCTCAAAATTCGAGTTTCAATAT
* * * * * * * *
68737567 TTAGAAATGAAAATTAAAAA-ATATCATAAGACACAAGAACTTCGCTCTACTTCACATTGTAAAT
127 ATAAAAATG-AAGTTAAAAAGA-ATCATAAGACACGAGAACTTCTCTATGCATCACATTGTAAAT
* * * *
68737631 TTTCATTTTAACCTT-TTAAAAGTTTATACTTTATCTT
190 TTCCATTTTAA-CTTATTAAAAATTTACACTATATCTT
68737668 TGAATCTGTA
Statistics
Matches: 356, Mismatches: 58, Indels: 53
0.76 0.12 0.11
Matches are distributed among these distances:
211 2 0.01
212 4 0.01
213 4 0.01
214 104 0.29
215 35 0.10
216 3 0.01
217 1 0.00
219 1 0.00
221 17 0.05
223 14 0.04
224 1 0.00
225 1 0.00
228 4 0.01
229 159 0.45
230 6 0.02
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (229 bp):
AAAAAAATTAAAACACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAA
AAATTTATAATTCATCTATAATTCCGTAACGGAATTTGCCTCAAAATTCGAGTTTCAATATATAA
AAATGAAGTTAAAAAGAATCATAAGACACGAGAACTTCTCTATGCATCACATTGTAAATTTCCAT
TTTAACTTATTAAAAATTTACACTATATCTTAAG
Found at i:68738392 original size:130 final size:131
Alignment explanation
Indices: 68738152--68738846 Score: 558
Period size: 130 Copynumber: 5.1 Consensus size: 131
68738142 AAAAATGAAA
* * * * *
68738152 TTAAAAAGAATCATAAGACACGAGAACTTCACTAAGCATCACATTGTAAATTACCATTTCAACCT
1 TTAAAAAGAATCATAAAACACAAGAACTTCACTATGCATCACATTGTAAATTTCCATTTTAACCT
* * * * *
68738217 CTTAAAAATTTATATTTTATCTTTAATTCTGTGA-CGGATTGTGCCTCAAAATT-GAGTTTCAAT
66 CTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGAATT-TGCCTCAAAATTCGAGTTTTAAT
68738280 AT
130 AT
68738282 TTAAAAAGAATCATAAAACACAAGAACTT-ATCTATGCATCACATTGTAAATTTCCATTTTAACC
1 TTAAAAAGAATCATAAAACACAAGAACTTCA-CTATGCATCACATTGTAAATTTCCATTTTAACC
* * * * *
68738346 TCTTAAAAATTTATACTTTATCTTTGATTCTATAACTGACTTTGCCTCGAAATTCGAATTTTAAT
65 TCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGAATTTGCCTCAAAATTCGAGTTTTAAT
68738411 ATT
130 A-T
* * * * *
68738414 TAAAAATAAAAAAATTATCATAAAACACGAGAACTTCACTATGCATCAAATGGTAAATTTCAATT
1 T-----TAAAAAGA--ATCATAAAACACAAGAACTTCACTATGCATCACATTGTAAATTTCCATT
* * * * *
68738479 TTAACCTCATAAAACTTTATACTATATCTATGATTTCTGTAGCCGAATTTGCCT-ATAAATTCGA
59 TTAACCTCTTAAAAATTTATACTTTATCTTTGA-TTCTGTAACCGAATTTGCCTCA-AAATTCGA
68738543 GTTTTAATAT
122 GTTTTAATAT
* * * *
68738553 TTAAAAATGAAATTTTAAAAAATATCATAAGACATAATAACTTCACTATGCATCACATGGTAAAT
1 TTAAAAA-G------------A-ATCATAAAACACAAGAACTTCACTATGCATCACATTGTAAAT
* * * * * * *
68738618 ATCGATTGTAACCTCTTTAAATTTTATACTTTATCTTTGATTCCGTAA-C-AACTTCGCCTCAAA
52 TTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGAA-TTTGCCTCAAA
* *
68738681 ATTCAAGTTTCAATATTTAAAAATGAAA
116 ATTC--G----AGT-TTT---AAT--AT
* * * *
68738709 TTAAAAAGAATCATAAGACACAAGAACTTCGCTCTGCATCACATTGTAAATTTCTATTTTAACCT
1 TTAAAAAGAATCATAAAACACAAGAACTTCACTATGCATCACATTGTAAATTTCCATTTTAACCT
* * * * *
68738774 ATTAAAAATTTATACTTTATATTTGATTCCGT-ACCGAATTTCGCCTCAAAATTTGAATTTTAAT
66 CTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGAATTT-GCCTCAAAATTCGAGTTTTAAT
68738838 AT
130 AT
68738840 TTAAAAA
1 TTAAAAA
68738847 TGAAATTAAA
Statistics
Matches: 457, Mismatches: 64, Indels: 87
0.75 0.11 0.14
Matches are distributed among these distances:
129 1 0.00
130 99 0.22
131 20 0.04
132 2 0.00
133 3 0.01
134 6 0.01
136 3 0.01
137 10 0.02
139 74 0.16
140 33 0.07
141 2 0.00
142 79 0.17
143 16 0.04
144 13 0.03
145 7 0.02
146 71 0.16
147 1 0.00
150 2 0.00
151 3 0.01
154 3 0.01
155 1 0.00
156 8 0.02
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (131 bp):
TTAAAAAGAATCATAAAACACAAGAACTTCACTATGCATCACATTGTAAATTTCCATTTTAACCT
CTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGAATTTGCCTCAAAATTCGAGTTTTAATA
T
Found at i:68740742 original size:143 final size:143
Alignment explanation
Indices: 68740491--68743353 Score: 3178
Period size: 143 Copynumber: 20.0 Consensus size: 143
68740481 CTAAGATATA
** * * * *
68740491 AGAACTTCATTATGCATCACAAGGTAAGTTTCCATTTTAACCTCTTAAAAATATATATTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * *
68740556 TTGATTCCGTAACAGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATAAAAAAGA
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
68740621 ATCATAAGACACG
131 ATCATAAGACACG
* * * * * *
68740634 AGAACTTCTCTGTGCATCACATGGTTAATTTTCATTTTAACCTCTTAAAAGTTTATACTATATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * *
68740699 TTCATTCTGTAACTGACTTCACCACAAAATTCGAGTTTTAATATTTAAAAATGAAATTGAAAAAA
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATT--AAAAA
* * *
68740764 AAATCATACGACA-T
129 GAATCATAAGACACG
* * * * *
68740778 AGAACTTTC-ATGTGCATCACATGGTAAATTTCCATTTTAATCTCTTAAAAATATATACTTTATT
1 AGAAC-TTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATC
* * * * * * * *
68740842 TTTGATACCGTAACAGACTTTGTCTCAAAATTTGAGTTTCAATATCTAAAAATGGAATTGAAAAA
65 TTTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATT-AAAAA
* * **
68740907 AAATTCATATGACATA
129 GAA-TCATAAGACACG
* **
68740923 AAAACTTCGCTATGCATCACATGGTAAATTTCCAAATTAACCTCTTAAAAATTTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * * * *
68740988 TTGACTCTGTAACAGACTTGGCCTCAAAATTTGAGTTTTAATATTTAAAAACGTAATTAATAAGA
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
68741053 ATCATAAGACACG
131 ATCATAAGACACG
* * *
68741066 AGAACTTCGCTATTCATCACATTGTAAATTTCTATTTTAACCTCTTAAAAATTTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * *
68741131 TTGATTCTATAACCGACTTCGCCT-AGAAATTCAAATTTTAATATTTAAAATTGAAATTAAAAAG
66 TTGATTCTGTAACGGACTTCGCCTCA-AAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAG
* *
68741195 AATCATACGACTCG
130 AATCATAAGACACG
* * * * *
68741209 AGAACTTCGTTGTGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATAATATATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * ** * * *
68741274 TTGTTTTTGTAACCAACTTCGCCTCCAAATTCGGGTTTTAATATTTAAAAAATGAAATTAAAAA-
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTT-AAAAATGAAATTAAAAAG
* *
68741338 CATCATAAGACA-T
130 AATCATAAGACACG
* *
68741351 AGGAACTTCGCTATGCATCAGATGGTAAATTTCCCTTTTAACCTCTTAAAAATTTATACTTTATC
1 A-GAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATC
* * * * **
68741416 TTTGATTCCGTAACGAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAG
65 TTTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAG
* *
68741481 AATTATAAGATACG
130 AATCATAAGACACG
* *
68741495 AGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * **
68741560 TTGATTCCGTAACGAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGA
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
* *
68741625 ATTATAAGATACG
131 ATCATAAGACACG
* *
68741638 AGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * **
68741703 TTGATTCCGTAACGAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGA
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
* *
68741768 ATTATAAGATACG
131 ATCATAAGACACG
* *
68741781 AGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * * * *
68741846 TAGATTTTGTAATC-GACTTCGCCTCGAAATTTGAATTTTAATATTTAAAATTGAAATTAAAAGG
66 TTGATTCTGTAA-CGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAG
68741910 AATCATAAGACACG
130 AATCATAAGACACG
* * *
68741924 AGAACTTCGTTGTGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * * * *
68741989 TAGATTTTGTAATC-GACTTCGCCTCGAAATTTGAATTTTAATATTTAAAATTGAAATTAAAAGG
66 TTGATTCTGTAA-CGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAG
68742053 AATCATAAGACACG
130 AATCATAAGACACG
* * *
68742067 AGAACTTCGTTGTGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * * * *
68742132 TAGATTTTGTAATC-GACTTCGCCTCGAAATTTGAATTTTAATATTTAAAATTGAAATTAAAAGG
66 TTGATTCTGTAA-CGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAG
68742196 AATCATAAGACACG
130 AATCATAAGACACG
* * * * *
68742210 AGAACTTCGTTGTGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATAATATATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* *
68742275 TTGATTCTGTAACTGACTTCGCCTCAAAATTCGAGTTTTAATATTTAAAAATGAAATTAAAAA-A
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
**
68742339 CATCATAAGACATA
131 -ATCATAAGACACG
* * * *
68742353 AGAACTTCGCTATGCATCACATGGTAAATTTCCTTTTTAACCTCTTAATAATTTATATTTTATTT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * *
68742418 TTGATT-TCGTAACGGACTTCACCTCAAAATTTGAGTGTCAATATTTAAAAATGAAATTGAAAAA
66 TTGATTCT-GTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATT-AAAAA
*
68742482 -AATCATAAGACACA
129 GAATCATAAGACACG
* * * * *
68742496 AGAACTTCGCTATGCATCACATTGTAAATTTCTATTTTAACCTTTTAAAAAATTATACTTGATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * *
68742561 TTGATTCCGTAACGGGCTTCACCCCAAAATTTGAGCTTCAATATTTAAAAATGAAATTTAAAAA-
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAA-TTAAAAAG
**
68742625 AATCATAAGACATA
130 AATCATAAGACACG
* *
68742639 AGAACTTCGCTATGCATCACATGTTAAATTTCCATTTTAA-CTGCTTAAAAATTTATATTTTATC
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCT-CTTAAAAATTTATACTTTATC
** * * *
68742703 TTTGATTCCATAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAATTGGAAAA
65 TTTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATT-AAAAA
* **
68742768 CAATCATAAGACATA
129 GAATCATAAGACACG
* *
68742783 AGAA-----C--T---TCACAT-GTAAATTTCCATTTTTACCTCTTCAAAAATTT-TACTTTATT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTT-AAAAATTTATACTTTATC
* * * * * * * * * *
68742836 TTTTATTCCGTAAAGG-CTTTGCTTCGAAGTCCAAGTTTTAATATTTAAAAATGAAATTGAAAAA
65 TTTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATT--AAAA
* * **
68742900 AAAATTATAAGACATA
128 AGAATCATAAGACACG
* * ** * * *
68742916 AGAACTTCACTATGCATCACATGATAAATTTTTATTGTAACCTCTTAAATATGTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * * * *
68742981 TT-AGTTCTATAACGGGCTTCACTTTAAAATTCGAGCTTCAATATTTTAACAATGAAATTAAAAA
66 TTGA-TTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATA-TTTAAAAATGAAATTAAAAA
*
68743045 GAATCATAAGACATG
129 GAATCATAAGACACG
* * * *
68743060 AGAACTTTGCT-TGCATCACATGGTAAATTTCCATTTTAACCTGTTAAAAGTTTATACTTTATTT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* ** * *
68743124 TTGATTCAGTAACCAATTTCGCCTCAAAATTCGAGTCTT-AATATTTAAAAATTAAATTTAAAAA
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGT-TTCAATATTTAAAAATGAAA-TTAAAAA
* **
68743188 -AATCACAAGACATA
129 GAATCATAAGACACG
* * * *
68743202 AGAACTTTGGTACGCATCACATGGCAAATTTCC-TTTTAACCTCTTAAAAATTTATACTTTATCT
1 AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * *
68743266 TTGATTCTGTAACGGACTGCGCCTCAAAATTCGAGTTTCATTATTTAAAAATGGAATTGAAAAAA
66 TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATT--AAAAA
* **
68743331 AAAGTCATAAGACATA
129 GAA-TCATAAGACACG
68743347 AGAACTT
1 AGAACTT
68743354 TACCTCGAAA
Statistics
Matches: 2381, Mismatches: 290, Indels: 96
0.86 0.10 0.03
Matches are distributed among these distances:
132 35 0.01
133 59 0.02
134 16 0.01
137 1 0.00
138 1 0.00
139 1 0.00
140 1 0.00
141 4 0.00
142 130 0.05
143 1733 0.73
144 229 0.10
145 157 0.07
146 14 0.01
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (143 bp):
AGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
TTGATTCTGTAACGGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
ATCATAAGACACG
Found at i:68741500 original size:66 final size:66
Alignment explanation
Indices: 68741430--68741787 Score: 148
Period size: 70 Copynumber: 5.1 Consensus size: 66
68741420 ATTCCGTAAC
68741430 GAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGAATTATAAGATACG
1 GAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGAATTATAAGATACG
68741495 A
66 A
* * * * * * ** * * * * * *
68741496 GAACTTCGCTATGCATCACATTGTAAATTTCCAT-TTTAAACTCTTAAA-AATTTATACTTTATC
1 GAACTTGGC-CT-CA--AAATT-TGAGTTTCAATATTTAAA-AATGAAATTAGTAAGA-ATTA--
** *
68741559 TTTGATTCCGTAA
57 TAAGA-TACG--A
68741572 CGAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGAATTATAAGATAC
1 -GAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGAATTATAAGATAC
68741637 GA
65 GA
* * * * * * ** * * * * * *
68741639 GAACTTCGCTATGCATCACATTGTAAATTTCCAT-TTTAAACTCTTAAA-AATTTATACTTTATC
1 GAACTTGGC-CT-CA--AAATT-TGAGTTTCAATATTTAAA-AATGAAATTAGTAAGA-ATTA--
** *
68741702 TTTGATTCCGTAA
57 TAAGA-TACG--A
68741715 CGAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGAATTATAAGATAC
1 -GAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGAATTATAAGATAC
68741780 GA
65 GA
68741782 GAACTT
1 GAACTT
68741788 CGCTATGCAT
Statistics
Matches: 194, Mismatches: 68, Indels: 60
0.60 0.21 0.19
Matches are distributed among these distances:
66 22 0.11
67 4 0.02
68 4 0.02
69 6 0.03
70 34 0.18
71 30 0.15
72 30 0.15
73 34 0.18
74 6 0.03
75 4 0.02
76 4 0.02
77 16 0.08
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (66 bp):
GAACTTGGCCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAGTAAGAATTATAAGATACG
A
Found at i:68742894 original size:132 final size:135
Alignment explanation
Indices: 68742655--68743353 Score: 397
Period size: 142 Copynumber: 5.0 Consensus size: 135
68742645 TCGCTATGCA
* *
68742655 TCACATGTTAAATTTCCATTTTAACTGCTTAAAAATTTATATTTTATCTTTGATTCCATAACGGA
1 TCACATGTTAAATTTCCATTTTAACTGCTTAAAAATTTATACTTTATCTTTGATTCCATAAAGGA
* * * *
68742720 CTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAATTG-GAAAACAATCATAAGACATAA
66 CTTTGCCTCAAAATCCAAGTTTCAATATTTAAAAATAAAATTGAAAAAAAAATCATAAGACATAA
68742784 GAACT
131 GAACT
* * * *
68742789 TCACATG-TAAATTTCCATTTTTACCT-CTTCAAAAATTT-TACTTTATTTTTTATTCCGTAAAG
1 TCACATGTTAAATTTCCA-TTTTAACTGCTT-AAAAATTTATACTTTATCTTTGATTCCATAAAG
* * * * * *
68742851 G-CTTTGCTTCGAAGTCCAAGTTTTAATATTTAAAAATGAAATTGAAAAAAAAATTATAAGACAT
64 GACTTTGCCTCAAAATCCAAGTTTCAATATTTAAAAATAAAATTGAAAAAAAAATCATAAGACAT
68742915 AAGAACT
129 AAGAACT
** * * *
68742922 TCACTATGCATCACATGATAAATTTTTATTGTAACCT-CTTAAATATGTATACTTTATCTTT-AG
1 TCAC-ATG-------T--TAAATTTCCATTTTAA-CTGCTTAAAAATTTATACTTTATCTTTGA-
* * * ** * * * * * * * *
68742985 TTCTATAACGGGCTTCACTTTAAAATTCGAGCTTCAATATTTTAACAATGAAATT--AAAAAGAA
54 TTCCATAAAGGACTTTGCCTCAAAATCCAAGTTTCAATA-TTTAAAAATAAAATTGAAAAAAAAA
*
68743048 TCATAAGACATGAGAACTTTGCTT
118 TCATAAGACATAAGAA-----C-T
* * *
68743072 GCATCACATGGTAAATTTCCATTTTAACCTG-TTAAAAGTTTATACTTTATTTTTGATT-CAGT-
1 ---TCACATGTTAAATTTCCATTTTAA-CTGCTTAAAAATTTATACTTTATCTTTGATTCCA-TA
** * * * * * *
68743134 AACCAATTTCGCCTCAAAATTCGAGTCTT-AATATTTAAAAATTAAATT--TAAAAAAATCACAA
61 AAGGACTTT-GCCTCAAAATCCAAGT-TTCAATATTTAAAAATAAAATTGAAAAAAAAATCATAA
68743196 GACATAAGAACTTTGGT
124 GACATAAGAAC-----T
** **
68743213 ACGCATCACATGGCAAATTTCC-TTTTAACCT-CTTAAAAATTTATACTTTATCTTTGATTCTGT
1 -----TCACATGTTAAATTTCCATTTTAA-CTGCTTAAAAATTTATACTTTATCTTTGATTCCAT
* ** * * * **
68743276 AACGGACTGCGCCTCAAAATTCGAGTTTCATTATTTAAAAATGGAATTGAAAAAAAAAGTCATAA
60 AAAGGACTTTGCCTCAAAATCCAAGTTTCAATATTTAAAAATAAAATTGAAAAAAAAA-TCATAA
68743341 GACATAAGAACT
124 GACATAAGAACT
68743353 T
1 T
68743354 TACCTCGAAA
Statistics
Matches: 438, Mismatches: 81, Indels: 91
0.72 0.13 0.15
Matches are distributed among these distances:
132 36 0.08
133 60 0.14
134 25 0.06
135 1 0.00
137 1 0.00
140 1 0.00
141 3 0.01
142 104 0.24
143 87 0.20
144 63 0.14
145 34 0.08
146 14 0.03
149 1 0.00
150 1 0.00
152 3 0.01
153 4 0.01
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (135 bp):
TCACATGTTAAATTTCCATTTTAACTGCTTAAAAATTTATACTTTATCTTTGATTCCATAAAGGA
CTTTGCCTCAAAATCCAAGTTTCAATATTTAAAAATAAAATTGAAAAAAAAATCATAAGACATAA
GAACT
Found at i:68743521 original size:143 final size:143
Alignment explanation
Indices: 68743355--68743697 Score: 625
Period size: 143 Copynumber: 2.4 Consensus size: 143
68743345 TAAGAACTTT
* * *
68743355 ACCTCGAAATTTGAATTTTAATATTTAAAAATGAAATTTAAAAAAATCATAACACACTTGAAGTT
1 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAATCATAACACACTTGAAGTT
68743420 TGCTATGCATTAGATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
66 TGCTATGCATTAGATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
68743485 AGTAACGGATTTC
131 AGTAACGGATTTC
68743498 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAATCATAACACACTTGAAGTT
1 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAATCATAACACACTTGAAGTT
68743563 TGCTATGCATTAGATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
66 TGCTATGCATTAGATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
68743628 AGTAACGGATTTC
131 AGTAACGGATTTC
* *
68743641 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAA-TTAGAAAGAATCATAAGACAC
1 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTA-AAAAAATCATAACACAC
68743698 GAGAACATCT
Statistics
Matches: 194, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
142 3 0.02
143 191 0.98
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (143 bp):
ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAATCATAACACACTTGAAGTT
TGCTATGCATTAGATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
AGTAACGGATTTC
Found at i:68743527 original size:212 final size:211
Alignment explanation
Indices: 68743161--68743543 Score: 536
Period size: 212 Copynumber: 1.8 Consensus size: 211
68743151 AATTCGAGTC
* * *
68743161 TTAATATTTAAAAATTAAATTTAAAAAAATCACAAGACATAAGAACTTTGGTACGCATCACATGG
1 TTAATATTTAAAAATGAAATTTAAAAAAATCACAACACATAAGAACTTTGCTACGCATCACATGG
* * * *
68743226 CAAATTTCCTTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACGGACTGCGCCTC
66 CAAATTTCATTTTAACCTCTTAAAAATTAATACTTTATCTTTAATTCTGTAACGGACTGCACCTC
* *
68743291 AAAATTCGAGTTTCATTATTTAAAAATGGAATTGAAAAAAAAAGTCATAAGACATAAGAACTTTA
131 AAAATTCGAGTTTCAATATTTAAAAATGAAATTGAAAAAAAAAGTCATAAGACATAAGAACTTTA
68743356 CCTCGAAATTTGAATT
196 CCTCGAAATTTGAATT
* * * * * *
68743372 TTAATATTTAAAAATGAAATTTAAAAAAATCATAACACACT-TGAAGTTTGCTATGCATTAGATG
1 TTAATATTTAAAAATGAAATTTAAAAAAATCACAACACA-TAAGAACTTTGCTACGCATCACATG
* * * *
68743436 GTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATT-TAGTAACGGATTTCAC
65 GCAAA-TTTCATTTTAACCTCTTAAAAATTAATACTTTATCTTTAATTCT-GTAACGGACTGCAC
* *
68743500 CTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAA
128 CTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTGAAAAAAA
68743544 TCATAACACA
Statistics
Matches: 148, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
211 58 0.39
212 90 0.61
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.36
Consensus pattern (211 bp):
TTAATATTTAAAAATGAAATTTAAAAAAATCACAACACATAAGAACTTTGCTACGCATCACATGG
CAAATTTCATTTTAACCTCTTAAAAATTAATACTTTATCTTTAATTCTGTAACGGACTGCACCTC
AAAATTCGAGTTTCAATATTTAAAAATGAAATTGAAAAAAAAAGTCATAAGACATAAGAACTTTA
CCTCGAAATTTGAATT
Found at i:68743726 original size:143 final size:143
Alignment explanation
Indices: 68743355--68743849 Score: 579
Period size: 143 Copynumber: 3.4 Consensus size: 143
68743345 TAAGAACTTT
* * * ** * *
68743355 ACCTCGAAATTTGAATTTTAATATTTAAAAATGAAATTTAAAAAAATCATAACACACTTGAAGTT
1 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAATCATAACACACGAGAAATC
*
68743420 TGCTATGCATTAGATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
66 TGCTATGCATTACATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
68743485 AGTAACGGATTTC
131 AGTAACGGATTTC
** * *
68743498 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAATCATAACACACTTGAAGTT
1 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAATCATAACACACGAGAAATC
*
68743563 TGCTATGCATTAGATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
66 TGCTATGCATTACATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
68743628 AGTAACGGATTTC
131 AGTAACGGATTTC
* *
68743641 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAA-TTAGAAAGAATCATAAGACACGAGAACA
1 ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTA-AAAAAATCATAACACACGAGAA-A
* * * * * *
68743705 TCT-CTGTGTATCT-CATTGTAAA-TTTCTATTTTAAACTCTTAAAAATTTATAATTTATCTTTT
64 TCTGCTATGCAT-TACATGGTAAATTTTC-ATTTTAACCTCTTAAAAATTAATATTTTATC-TTT
* * **
68743767 GATTTTGTAACCAATATT-
126 AATTTAGTAACGGAT-TTC
* * * ** * * *
68743785 GCCTCAAAATTCGTA-TTTTAATATTTAAAGTTAAAATTTAAAAAAAATGATAAAACACGAGAAA
1 ACCTCAAAATTTG-AGTTTCAATATTTAAAAATGAAATTT-AAAAAAATCATAACACACGAGAAA
68743849 T
64 T
68743850 TTGTTATGTA
Statistics
Matches: 314, Mismatches: 29, Indels: 17
0.87 0.08 0.05
Matches are distributed among these distances:
142 7 0.02
143 235 0.75
144 47 0.15
145 24 0.08
146 1 0.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.39
Consensus pattern (143 bp):
ACCTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTTAAAAAAATCATAACACACGAGAAATC
TGCTATGCATTACATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTTAATTT
AGTAACGGATTTC
Found at i:68743730 original size:497 final size:499
Alignment explanation
Indices: 68742871--68743777 Score: 1138
Period size: 497 Copynumber: 1.8 Consensus size: 499
68742861 GAAGTCCAAG
* *
68742871 TTTTAATATTTAAAAATGAAATTGAAAAAAAAATTATAAGACATAAGAACTTCACTATGCATCAC
1 TTTTAATATTTAAAAATGAAATT-AAAAAAAAATCATAACACATAAGAACTTCACTATGCATCAC
* * * *
68742936 ATGATAAATTTTTATTGTAACCTCTTAAATATGTATACTTTATCTTTAGTTCTATAACGGGCTTC
65 ATGATAAATTTTCATTGTAACCTCTTAAAAATGTATACTTTATCTTTAATTCTATAACGGACTTC
* * * *
68743001 ACTTTAAAATTCGAGCTTCAATATTTTAACAATGAAATTAAAAAGAATCATAAGACATGAGAACT
130 ACCTCAAAATTCGAGCTTCAATATTTTAAAAATGAAATTAAAAAGAATCATAACACATGAGAACT
* * * * *
68743066 TTGCTTGCATCACATGGTAAATTTCCATTTTAACCTGTTAAAAGTTTATACTTTATTTTTGATTC
195 TTGCTTGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTAATACTTTATCTTTAATTC
* *
68743131 AGTAACCAATTTCGCCTCAAAATTCGAGTCTTAATATTTAAAAATTAAATTTAAAAAAATCACAA
260 AGTAACCAATTTCACCTCAAAATTCGAGTCTTAATATTTAAAAATGAAATTTAAAAAAATCACAA
* * * *
68743196 GACATAAGAACTTTGGTACGCATCACATGGCAAATTTC-CTTTTAACCTCTTAAAAATTTATACT
325 GACACAAGAACTTTGGTA-GCATCACATGGCAAATTTCTATTTTAAACTCTTAAAAATTTATAAT
68743260 TTATC-TTTGATTCTGTAACGGACTGCGCCTCAAAATTCGAGTTTCATTATTTAAAAATGGAATT
389 TTATCTTTTGATTCTGTAACGGACTGCGCCTCAAAATTCGAGTTTCATTATTTAAAAATGGAATT
68743324 GAAAAAAAAAGTCATAAGACATAAGAACTTTACCTCGAAATTTGAA
454 GAAAAAAAAAGTCATAAGACATAAGAACTTTACCTCGAAATTTGAA
* * * ** * *
68743370 TTTTAATATTTAAAAATGAAATT-TAAAAAAATCATAACACACT-TGAAGTTTGCTATGCATTAG
1 TTTTAATATTTAAAAATGAAATTAAAAAAAAATCATAACACA-TAAGAACTTCACTATGCATCAC
* * * *
68743433 ATGGTAAATTTTCATTTTAACCTCTTAAAAAT-TAATATTTTATCTTTAATT-TAGTAACGGATT
65 ATGATAAATTTTCATTGTAACCTCTTAAAAATGT-ATACTTTATCTTTAATTCTA-TAACGGACT
* * *
68743496 TCACCTCAAAATTTGAGTTTCAATA-TTTAAAAATGAAATTTAAAAA-AATCATAACACACT-TG
128 TCACCTCAAAATTCGAGCTTCAATATTTTAAAAATGAAA-TTAAAAAGAATCATAACACA-TGAG
* * * * *
68743558 AAGTTTGCTATGCATTAGATGGTAAATTTTCATTTTAACCTCTTAAAAATTAATATTTTATCTTT
191 AACTTTGCT-TGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTAATACTTTATCTTT
* ** * *
68743623 AATTTAGTAACGGATTTCACCTCAAAATTTGAGT-TTCAATATTTAAAAATGAAA-TTAGAAAGA
255 AATTCAGTAACCAATTTCACCTCAAAATTCGAGTCTT-AATATTTAAAAATGAAATTTA-AAAAA
* * * * * *
68743686 ATCATAAGACACGAGAACATCTCT-GT-GTATCTCATTGTAAATTTCTATTTTAAACTCTTAAAA
318 ATCACAAGACACAAGAAC-T-T-TGGTAGCATCACATGGCAAATTTCTATTTTAAACTCTTAAAA
*
68743749 ATTTATAATTTATCTTTTGATTTTGTAAC
380 ATTTATAATTTATCTTTTGATTCTGTAAC
68743778 CAATATTGCC
Statistics
Matches: 343, Mismatches: 52, Indels: 26
0.81 0.12 0.06
Matches are distributed among these distances:
496 40 0.12
497 233 0.68
498 30 0.09
499 39 0.11
500 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.38
Consensus pattern (499 bp):
TTTTAATATTTAAAAATGAAATTAAAAAAAAATCATAACACATAAGAACTTCACTATGCATCACA
TGATAAATTTTCATTGTAACCTCTTAAAAATGTATACTTTATCTTTAATTCTATAACGGACTTCA
CCTCAAAATTCGAGCTTCAATATTTTAAAAATGAAATTAAAAAGAATCATAACACATGAGAACTT
TGCTTGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTAATACTTTATCTTTAATTCA
GTAACCAATTTCACCTCAAAATTCGAGTCTTAATATTTAAAAATGAAATTTAAAAAAATCACAAG
ACACAAGAACTTTGGTAGCATCACATGGCAAATTTCTATTTTAAACTCTTAAAAATTTATAATTT
ATCTTTTGATTCTGTAACGGACTGCGCCTCAAAATTCGAGTTTCATTATTTAAAAATGGAATTGA
AAAAAAAAGTCATAAGACATAAGAACTTTACCTCGAAATTTGAA
Found at i:68746393 original size:21 final size:21
Alignment explanation
Indices: 68746350--68746393 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
68746340 AAAAAACTTT
* * **
68746350 AAAATAATTAAAATTTAGTAA
1 AAAATAATAAAAATCTAAAAA
68746371 AAAATAATAAAAATCTAAAAA
1 AAAATAATAAAAATCTAAAAA
68746392 AA
1 AA
68746394 CTTACAAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.25
Consensus pattern (21 bp):
AAAATAATAAAAATCTAAAAA
Found at i:68746441 original size:13 final size:13
Alignment explanation
Indices: 68746410--68746434 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68746400 AAAAATTCCA
68746410 AAATAATAATAAT
1 AAATAATAATAAT
68746423 AAATAATAATAA
1 AAATAATAATAA
68746435 ATAATAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:68751834 original size:16 final size:17
Alignment explanation
Indices: 68751798--68751834 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
68751788 CTTTTGATTA
*
68751798 AAAAATATTTTTGAAAT
1 AAAAATATTTTTGAAAC
68751815 AAAAATATTTTT-AAAC
1 AAAAATATTTTTGAAAC
68751831 AAAA
1 AAAA
68751835 CGCTTTACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (17 bp):
AAAAATATTTTTGAAAC
Found at i:68753145 original size:40 final size:40
Alignment explanation
Indices: 68753101--68753181 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
68753091 ATATCATCTG
68753101 CGAATTTATATCATTAATCATAAACATACAATCATAAAAT
1 CGAATTTATATCATTAATCATAAACATACAATCATAAAAT
*
68753141 CGAATTTATATCATTAATCATAAACATATAATCATAAAAT
1 CGAATTTATATCATTAATCATAAACATACAATCATAAAAT
68753181 C
1 C
68753182 ATTCATCCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.33
Consensus pattern (40 bp):
CGAATTTATATCATTAATCATAAACATACAATCATAAAAT
Found at i:68753174 original size:14 final size:14
Alignment explanation
Indices: 68753115--68753178 Score: 53
Period size: 14 Copynumber: 4.7 Consensus size: 14
68753105 TTTATATCAT
68753115 TAATCATAAACATA
1 TAATCATAAACATA
* *
68753129 CAATCATAAA-ATC
1 TAATCATAAACATA
* * *
68753142 GAAT-TTATATCAT-
1 TAATCATA-AACATA
68753155 TAATCATAAACATA
1 TAATCATAAACATA
68753169 TAATCATAAA
1 TAATCATAAA
68753179 ATCATTCATC
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
12 2 0.05
13 13 0.34
14 23 0.61
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (14 bp):
TAATCATAAACATA
Found at i:68756059 original size:19 final size:19
Alignment explanation
Indices: 68756037--68756080 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
68756027 ATCAGAATTA
*
68756037 AAAATAATCCCAAAAATCC
1 AAAACAATCCCAAAAATCC
* *
68756056 AAAACAGTCCCAAAAGTCC
1 AAAACAATCCCAAAAATCC
68756075 AAAACA
1 AAAACA
68756081 GTCCAACGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.27, G:0.05, T:0.11
Consensus pattern (19 bp):
AAAACAATCCCAAAAATCC
Found at i:68756081 original size:19 final size:19
Alignment explanation
Indices: 68756044--68756084 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
68756034 TTAAAAATAA
68756044 TCCCAAAAATCCAAAACAG
1 TCCCAAAAATCCAAAACAG
*
68756063 TCCCAAAAGTCCAAAACAG
1 TCCCAAAAATCCAAAACAG
68756082 TCC
1 TCC
68756085 AACGGTATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.46, C:0.34, G:0.07, T:0.12
Consensus pattern (19 bp):
TCCCAAAAATCCAAAACAG
Found at i:68756085 original size:10 final size:10
Alignment explanation
Indices: 68756053--68756086 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
68756043 ATCCCAAAAA
68756053 TCCAAAACAG
1 TCCAAAACAG
*
68756063 TCCCAAA-AG
1 TCCAAAACAG
68756072 TCCAAAACAG
1 TCCAAAACAG
68756082 TCCAA
1 TCCAA
68756087 CGGTATGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.47, C:0.32, G:0.09, T:0.12
Consensus pattern (10 bp):
TCCAAAACAG
Found at i:68765574 original size:29 final size:28
Alignment explanation
Indices: 68765517--68765583 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 28
68765507 TACATAGTAC
68765517 ATATATATGCGTGGTTCTACTATACATA
1 ATATATATGCGTGGTTCTACTATACATA
* * * *
68765545 ATATATATGTGTGGGTTTTATTATATATA
1 ATATATATGCGT-GGTTCTACTATACATA
68765574 ATATATATGC
1 ATATATATGC
68765584 AATTATAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
28 11 0.33
29 22 0.67
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (28 bp):
ATATATATGCGTGGTTCTACTATACATA
Found at i:68767490 original size:19 final size:18
Alignment explanation
Indices: 68767457--68767506 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
68767447 ACTGGAATTA
*
68767457 AAAATAGTCCTAAAAATCC
1 AAAACAGTCC-AAAAATCC
* *
68767476 AAAACAGTTCCAAAAGTTC
1 AAAACAG-TCCAAAAATCC
68767495 AAAACAGTCCAA
1 AAAACAGTCCAA
68767507 CGATACGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 5 0.19
19 19 0.70
20 3 0.11
ACGTcount: A:0.52, C:0.22, G:0.08, T:0.18
Consensus pattern (18 bp):
AAAACAGTCCAAAAATCC
Found at i:68767747 original size:23 final size:23
Alignment explanation
Indices: 68767721--68767768 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
68767711 ACAGACATCA
* * *
68767721 ATGCATAGCAGATACATATTCAG
1 ATGCATAGCAAATAAAGATTCAG
*
68767744 ATGCATATCAAATAAAGATTCAG
1 ATGCATAGCAAATAAAGATTCAG
68767767 AT
1 AT
68767769 CCCACTGCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.27
Consensus pattern (23 bp):
ATGCATAGCAAATAAAGATTCAG
Found at i:68770214 original size:24 final size:25
Alignment explanation
Indices: 68770187--68770254 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
68770177 GGTATATTCT
*
68770187 CCGTCAATTCATCCTTTTCA-TATA
1 CCGTCAATTCATCCTTTGCATTATA
*
68770211 CCGTCAATTCATCCTTTGCATTTTA
1 CCGTCAATTCATCCTTTGCATTATA
*
68770236 CCATCAATTCATCCTTTGC
1 CCGTCAATTCATCCTTTGC
68770255 CACAGAACGA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 19 0.47
25 21 0.52
ACGTcount: A:0.22, C:0.31, G:0.06, T:0.41
Consensus pattern (25 bp):
CCGTCAATTCATCCTTTGCATTATA
Found at i:68770330 original size:19 final size:18
Alignment explanation
Indices: 68770308--68770345 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
68770298 CATTCAAATC
68770308 AATTTCATATTTCAACAAT
1 AATTTCAT-TTTCAACAAT
*
68770327 AATTTTATTTTCAACAAT
1 AATTTCATTTTCAACAAT
68770345 A
1 A
68770346 GATATGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTTCATTTTCAACAAT
Found at i:68777973 original size:25 final size:25
Alignment explanation
Indices: 68777911--68777984 Score: 98
Period size: 25 Copynumber: 3.0 Consensus size: 25
68777901 TACTTGGGCA
* *
68777911 CATTTT-CCCTCAATTCATTCTTTG
1 CATTTTACCATCAATTCATCCTTTG
*
68777935 CA-TATACCATCAATTCATCCTTTG
1 CATTTTACCATCAATTCATCCTTTG
*
68777959 CATTTTACCGTCAATTCATCCTTTG
1 CATTTTACCATCAATTCATCCTTTG
68777984 C
1 C
68777985 CACAGAATGA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
23 2 0.05
24 20 0.47
25 21 0.49
ACGTcount: A:0.22, C:0.30, G:0.05, T:0.43
Consensus pattern (25 bp):
CATTTTACCATCAATTCATCCTTTG
Found at i:68778059 original size:19 final size:19
Alignment explanation
Indices: 68778037--68778073 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
68778027 CATTCAATTC
68778037 AATTTCATATTTCAACAAT
1 AATTTCATATTTCAACAAT
* *
68778056 AATTTTATCTTTCAACAA
1 AATTTCATATTTCAACAA
68778074 CAGATATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (19 bp):
AATTTCATATTTCAACAAT
Found at i:68786255 original size:17 final size:17
Alignment explanation
Indices: 68786233--68786273 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
68786223 CACATGGGTT
68786233 GGCCACACACCCGTGTG
1 GGCCACACACCCGTGTG
**
68786250 GGCCACATGCCCGTGTG
1 GGCCACACACCCGTGTG
*
68786267 AGCCACA
1 GGCCACA
68786274 TGGGCTGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.20, C:0.39, G:0.29, T:0.12
Consensus pattern (17 bp):
GGCCACACACCCGTGTG
Found at i:68786274 original size:17 final size:17
Alignment explanation
Indices: 68786242--68786275 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68786232 TGGCCACACA
*
68786242 CCCGTGTGGGCCACATG
1 CCCGTGTGAGCCACATG
68786259 CCCGTGTGAGCCACATG
1 CCCGTGTGAGCCACATG
68786276 GGCTGTCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.15, C:0.35, G:0.32, T:0.18
Consensus pattern (17 bp):
CCCGTGTGAGCCACATG
Found at i:68787137 original size:14 final size:14
Alignment explanation
Indices: 68787115--68787144 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
68787105 GTTGCGTTCG
*
68787115 TAGTTAATTTAGAT
1 TAGTAAATTTAGAT
68787129 TAGTAAATTTAGAT
1 TAGTAAATTTAGAT
68787143 TA
1 TA
68787145 AAACAATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
TAGTAAATTTAGAT
Found at i:68790806 original size:8 final size:8
Alignment explanation
Indices: 68790795--68790819 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
68790785 CTTTTCTTCT
68790795 TATTATTA
1 TATTATTA
68790803 TATTATTA
1 TATTATTA
68790811 TATTATTA
1 TATTATTA
68790819 T
1 T
68790820 TTCTTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TATTATTA
Found at i:68790839 original size:29 final size:29
Alignment explanation
Indices: 68790807--68790889 Score: 86
Period size: 28 Copynumber: 3.0 Consensus size: 29
68790797 TTATTATATT
68790807 ATTATATTATTATTTCTTTATTTATTCTA
1 ATTATATTATTATTTCTTTATTTATTCTA
* *
68790836 ATTATTTTATT-TTT-TATTAGTTT-TACTA
1 ATTATATTATTATTTCT-TTA-TTTATTCTA
*
68790864 ATTTTA-T-TTATTTCTTTATTTATTCT
1 ATTATATTATTATTTCTTTATTTATTCT
68790890 TGTTTATTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
26 5 0.11
27 11 0.25
28 15 0.34
29 13 0.30
ACGTcount: A:0.24, C:0.06, G:0.01, T:0.69
Consensus pattern (29 bp):
ATTATATTATTATTTCTTTATTTATTCTA
Found at i:68795792 original size:20 final size:20
Alignment explanation
Indices: 68795767--68795810 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
68795757 TGGTCAGGAG
*
68795767 ATATCACAGTATCACAAATT
1 ATATCACACTATCACAAATT
68795787 ATATCACACTATCACAAATT
1 ATATCACACTATCACAAATT
68795807 ATAT
1 ATAT
68795811 AATGGCATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.32
Consensus pattern (20 bp):
ATATCACACTATCACAAATT
Found at i:68797935 original size:15 final size:14
Alignment explanation
Indices: 68797898--68797935 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
68797888 ATTTATGTTT
68797898 ATACATT-ACAATC
1 ATACATTCACAATC
68797911 ATACATTTCACAATC
1 ATACA-TTCACAATC
68797926 ATAACATTCA
1 AT-ACATTCA
68797936 ATTTAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 5 0.23
14 2 0.09
15 12 0.55
16 3 0.14
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.32
Consensus pattern (14 bp):
ATACATTCACAATC
Found at i:68801373 original size:12 final size:12
Alignment explanation
Indices: 68801351--68801387 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
68801341 ATTAAATATT
68801351 AGAACAATAAAGA
1 AGAA-AATAAAGA
68801364 AGAAAATAAAGA
1 AGAAAATAAAGA
*
68801376 AGATAATAAAGA
1 AGAAAATAAAGA
68801388 TGATAGATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 19 0.83
13 4 0.17
ACGTcount: A:0.70, C:0.03, G:0.16, T:0.11
Consensus pattern (12 bp):
AGAAAATAAAGA
Found at i:68801392 original size:12 final size:12
Alignment explanation
Indices: 68801356--68801392 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
68801346 ATATTAGAAC
*
68801356 AATAAAGAAGAA
1 AATAAAGAAGAT
68801368 AATAAAGAAGAT
1 AATAAAGAAGAT
*
68801380 AATAAAGATGAT
1 AATAAAGAAGAT
68801392 A
1 A
68801393 GATGGAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (12 bp):
AATAAAGAAGAT
Found at i:68807507 original size:52 final size:52
Alignment explanation
Indices: 68807450--68807553 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
68807440 AAAGAAAGAC
68807450 ACCTAGTTTTTTTATTTACGAAAAGAGCGACTAAGTTTTAAAAATAATTCAA
1 ACCTAGTTTTTTTATTTACGAAAAGAGCGACTAAGTTTTAAAAATAATTCAA
68807502 ACCTAGTTTTTTTATTTACGAAAAGAGCGACTAAGTTTTAAAAATAATTCAA
1 ACCTAGTTTTTTTATTTACGAAAAGAGCGACTAAGTTTTAAAAATAATTCAA
68807554 TTAAGTCCCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (52 bp):
ACCTAGTTTTTTTATTTACGAAAAGAGCGACTAAGTTTTAAAAATAATTCAA
Found at i:68811158 original size:39 final size:39
Alignment explanation
Indices: 68811115--68811194 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
68811105 TACAAAGTCA
68811115 TCAGGAAAGATAAACTTATCTACAAGTACCAATACGTCC
1 TCAGGAAAGATAAACTTATCTACAAGTACCAATACGTCC
*
68811154 TCAGGAAAGATAAACTTATCTACACGTACCAATACGTCC
1 TCAGGAAAGATAAACTTATCTACAAGTACCAATACGTCC
68811193 TC
1 TC
68811195 GATTTTTCCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (39 bp):
TCAGGAAAGATAAACTTATCTACAAGTACCAATACGTCC
Found at i:68820230 original size:49 final size:49
Alignment explanation
Indices: 68820146--68820754 Score: 1063
Period size: 49 Copynumber: 12.6 Consensus size: 49
68820136 TATTTGAATA
* *
68820146 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68820193 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68820242 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68820291 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68820340 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68820389 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68820438 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68820487 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68820536 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
68820585 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68820632 AATGTGAAAGTGTATATATGTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
68820681 AATGTGAAAGTGTATATATA--TGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68820728 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
68820755 TCCCGAAGGG
Statistics
Matches: 541, Mismatches: 15, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 99 0.18
49 440 0.81
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Done.