Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 224 of 313
Found at i:68825814 original size:549 final size:535
Alignment explanation
Indices: 68824440--68825936 Score: 1887
Period size: 538 Copynumber: 2.8 Consensus size: 535
68824430 AGCAAATTAT
*
68824440 AAGATGACACAATGGGTGAAA-TCGTTGTATCAATTTTTTTTGTTAAAATTGCCTCCGCAATAAT
1 AAGATGACACAATGGGTGAAACT-GTTGTATCAATTTTTTTTGTTAAAATTGCCTCAGCAATAAT
*
68824504 TTCATCATAAAAATAATAATATTTTTATAATAAGACGACACAATGGATGAAA---C---CA-TGG
65 TTCA-CATAAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACCTCGATCAGTGG
* * * *
68824562 CAGTTTGTCACATAAAAAAATATTTTCAAAGCCGAACATTACACCCTTGACATGTTTTAACATTT
129 CAGTTTCTCATATAAAAAAA-A-TTTCAAAGTCGAACGTTACACCCTTGACATGTTTTAACATTT
* * * * *
68824627 CCAAAAGCAAAAAGTTTTGGGGCGTTACACCCTTAAAGCCAAACGTTCCTCTGTTTTTTCCCCCT
192 CCAAAAACAAAAATTTTTGGGGCGTTACACCCTTAAAGCC-AACGTTCCTCTCTTCTTTCTCCCT
* * *
68824692 TGGTTCGGTTTGCACGAAGAAAAGGTGGAAATGTTTTTGTTTTTGCCTCATATTCCCATTATCAC
256 T-GTTCGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTGCCACCTATT-CCATTATCAC
* *
68824757 TTATGTTCTATTTAAATAAATTTTAATTTTATAATTTTAATTACTAATGTTTTATAATATAACAT
319 TTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATATAACAT
* * *
68824822 ACATGCTTACTTCAATAA-TGGACC-ATATATATTCTAGGTATAATTACTATTTAACCCCTATAA
384 ACATACTTACTTCATTAACT-GACCAATATATATTCTAGGTAAAATTACTATTTAACCCCTATAA
* * *
68824885 ATTAAGTTCTAATTGTAAATCCTTAAAAAATTACAAGATGACACAATGGGTTTACAACAATTTCA
448 ATTAAGTTCTAATTATAAATCCTTAAAAAATTACAAGATGACACAATGGATTTACAACAAATTCA
*
68824950 TGATAAGAATAATATTTTATAAC
513 TGATAAAAATAATATTTTATAAC
* * * * ** * * * * *
68824973 AAGTTGACACAACGAGTGAAGCCATTGTATC-AGTTTTTTTGTGAAAATTACCTCTGCAACAATT
1 AAGATGACACAATGGGTGAAACTGTTGTATCAATTTTTTTTGTTAAAATTGCCTCAGCAATAATT
* * * *
68825037 T--CATGATAAA-AATAATATTTTTATAATAAGACGACACAATAGGTGAAACCATTGTATTAGCT
66 TCACAT-AAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACC-TCG-ATCAG-T
** * * *
68825099 GGCAGTTTCTCATGGAAAAAACATTTTCAAAGTCAAACGTTACACCCTTGTCATGTTTTAACAAT
127 GGCAGTTTCTCATATAAAAAA-AATTTCAAAGTCGAACGTTACACCCTTGACATGTTTTAAC-AT
* * * * *
68825164 TT-CAAAAATAAAAATTTTTGGGGTGTTATACCCTAAAAGTCGAACGTTCCTCTCTTCTTTCTCC
190 TTCCAAAAACAAAAATTTTTGGGGCGTTACACCCTTAAAG-CCAACGTTCCTCTCTTCTTTCTCC
* *
68825228 CTTGGTCGGTTTGCATGAAGAAAAAGATGGAAATGTTTTTGTTTTTGCCACCTATTCCGATTATC
254 CTTGTTCGGTTTGCACGAAG-AAAAGATGGAAATGTTTTTGTTTTTGCCACCTATTCC-ATTATC
68825293 ACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATATAAC
317 ACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATATAAC
* * * * * *
68825358 ATGCATAATAACTTCATTAACTGACCAGATATATATTCTAGGTAAAATTATTATTTAACCCTTTT
382 ATACATACTTACTTCATTAACTGACCA-ATATATATTCTAGGTAAAATTACTATTTAACCCCTAT
* * *
68825423 AAATTAAGTTCTAATTATAAATTCTTAAGCAAATTATAAGATGACACAATGGATTTACAACAAAT
446 AAATTAAGTTCTAATTATAAATCCTTAA-AAAATTACAAGATGACACAATGGATTTACAACAAAT
*
68825488 TCATGGTAAAAATAATAATATTCTATAAC
510 TCATGATAAAAATAAT-AT-TT-TATAAC
* * *
68825517 AAGATGGCACAATGGGTGAAACTGTCGTATCAATTTTTTTTTGTTAAAATTGTCTTCAG-AATAA
1 AAGATGACACAATGGGTGAAACTGTTGTATCAA-TTTTTTTTGTTAAAATTG-CCTCAGCAATAA
68825581 TTTCACAATAAAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACCGTCGAATCA
64 TTTCAC-AT-AAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACC-TCG-ATC-
** *
68825646 AGTGGCAGTTTCTCATATAAAAAAAATTTCAAAGTCGATTGTTACACCTTTGACATGTTTTAACA
124 AGTGGCAGTTTCTCATATAAAAAAAATTTCAAAGTCGAACGTTACACCCTTGACATGTTTTAACA
68825711 TTTCCAAAAACAAAAATTTTTGGGGCGTTACACCCTTAAAGCCAAGCGTTCCTCTCTTCTTTCTC
189 TTTCCAAAAACAAAAATTTTTGGGGCGTTACACCCTTAAAGCCAA-CGTTCCTCTCTTCTTTCTC
* * * * * *
68825776 CCTTAGTTCAGTTTGCCCGAAGAAAATATGGAAATGTTTTTATTTTTGCCATCTATTTCCAATAT
253 CCTT-GTTCGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTGCCACCTA-TTCCATTAT
* * *
68825841 CACTTATGTTCTATTTAATTAAA-TTTCATTTTATAATTCTAATTACTAATGCTTTATGATATAA
316 CACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATATAA
* *
68825905 CATACATACTTGCTTCATTAACCGACC-ATATA
381 CATACATACTTACTTCATTAACTGACCAATATA
68825937 AAATAATAAT
Statistics
Matches: 819, Mismatches: 109, Indels: 59
0.83 0.11 0.06
Matches are distributed among these distances:
529 39 0.05
530 4 0.00
532 29 0.04
533 24 0.03
537 18 0.02
538 207 0.25
539 24 0.03
540 60 0.07
541 46 0.06
542 2 0.00
543 2 0.00
544 29 0.04
545 1 0.00
546 27 0.03
547 4 0.00
548 68 0.08
549 153 0.19
550 80 0.10
551 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (535 bp):
AAGATGACACAATGGGTGAAACTGTTGTATCAATTTTTTTTGTTAAAATTGCCTCAGCAATAATT
TCACATAAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACCTCGATCAGTGGCA
GTTTCTCATATAAAAAAAATTTCAAAGTCGAACGTTACACCCTTGACATGTTTTAACATTTCCAA
AAACAAAAATTTTTGGGGCGTTACACCCTTAAAGCCAACGTTCCTCTCTTCTTTCTCCCTTGTTC
GGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTGCCACCTATTCCATTATCACTTATGTT
CTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATATAACATACATACT
TACTTCATTAACTGACCAATATATATTCTAGGTAAAATTACTATTTAACCCCTATAAATTAAGTT
CTAATTATAAATCCTTAAAAAATTACAAGATGACACAATGGATTTACAACAAATTCATGATAAAA
ATAATATTTTATAAC
Found at i:68827541 original size:29 final size:29
Alignment explanation
Indices: 68827499--68827638 Score: 124
Period size: 29 Copynumber: 4.8 Consensus size: 29
68827489 ATACAAAATT
68827499 TAAAATTACATTTTGACCTCC-ACTTTTCC
1 TAAAATTACATTTTGACCTCCAAC-TTTCC
* *
68827528 TAAAATTACATTTTAACCCCCAAACTTT-C
1 TAAAATTACATTTTGACCTCC-AACTTTCC
* *
68827557 TCAAAATTATATTTTGACCCTCCAACTTTCT
1 T-AAAATTACATTTTGA-CCTCCAACTTTCC
* ** ** *
68827588 TAAAATTACATATCAACCTTAAATTTTCC
1 TAAAATTACATTTTGACCTCCAACTTTCC
*
68827617 TAAAATTACACTTTGACC-CCAA
1 TAAAATTACATTTTGACCTCCAA
68827639 AAATTTTCCA
Statistics
Matches: 86, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
28 2 0.02
29 44 0.51
30 33 0.38
31 7 0.08
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (29 bp):
TAAAATTACATTTTGACCTCCAACTTTCC
Found at i:68827565 original size:30 final size:29
Alignment explanation
Indices: 68827500--68827598 Score: 112
Period size: 30 Copynumber: 3.3 Consensus size: 29
68827490 TACAAAATTT
*
68827500 AAAATTACATTTTGACCTCC-ACTTT-TCC
1 AAAATTACATTTTGACCCCCAACTTTCT-C
*
68827528 TAAAATTACATTTTAACCCCCAAACTTTCTC
1 -AAAATTACATTTTGACCCCC-AACTTTCTC
* *
68827559 AAAATTATATTTTGACCCTCCAACTTTCTT
1 AAAATTACATTTTGACCC-CCAACTTTCTC
68827589 AAAATTACAT
1 AAAATTACAT
68827599 ATCAACCTTA
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
29 18 0.30
30 33 0.55
31 8 0.13
32 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.38
Consensus pattern (29 bp):
AAAATTACATTTTGACCCCCAACTTTCTC
Found at i:68827622 original size:59 final size:59
Alignment explanation
Indices: 68827499--68827635 Score: 154
Period size: 59 Copynumber: 2.3 Consensus size: 59
68827489 ATACAAAATT
* *
68827499 TAAAATTACATTTTGA-CCTCCACTTTTCCTAAAATTACATTTTAACCCCCAAACTTTC
1 TAAAATTACATTTTGACCCTCCACTTTTCCTAAAATTACATATCAACCCCCAAACTTTC
* * ** *
68827557 TCAAAATTATATTTTGACCCTCCAAC-TTTCTTAAAATTACATATCAA-CCTTAAATTTTCC
1 T-AAAATTACATTTTGACCCTCC-ACTTTTCCTAAAATTACATATCAACCCCCAAACTTT-C
*
68827617 TAAAATTACACTTTGACCC
1 TAAAATTACATTTTGACCC
68827636 CAAAAATTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
58 1 0.02
59 38 0.58
60 25 0.38
61 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.02, T:0.38
Consensus pattern (59 bp):
TAAAATTACATTTTGACCCTCCACTTTTCCTAAAATTACATATCAACCCCCAAACTTTC
Found at i:68828111 original size:4 final size:4
Alignment explanation
Indices: 68828096--68828184 Score: 88
Period size: 4 Copynumber: 24.5 Consensus size: 4
68828086 GTTTGAGAAG
*
68828096 AAGA AA-A AAGA AAGA AAGG AA-A AAG- AAGA AAGA AA-A AAGA AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA
* *
68828140 AAGG AA-A AAG- AAGA AAGA AA-A AAG- AA-A AATA AAGA AAGA AAGA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA
68828183 AA
1 AA
68828185 ATAAAAATAA
Statistics
Matches: 71, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
3 23 0.32
4 48 0.68
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (4 bp):
AAGA
Found at i:68828118 original size:14 final size:12
Alignment explanation
Indices: 68828096--68828198 Score: 68
Period size: 14 Copynumber: 8.1 Consensus size: 12
68828086 GTTTGAGAAG
*
68828096 AAGAAA-AAAGA
1 AAGAAAGAAAAA
68828107 AAGAAAGGAAAAA
1 AAGAAA-GAAAAA
68828120 GAAGAAAGAAAAAAGA
1 -AAGAAAG--AAAA-A
68828136 AAGAAAGGAAAAA
1 AAGAAA-GAAAAA
68828149 GAAGAAAG-AAAA
1 -AAGAAAGAAAAA
*
68828161 AAGAAAAATAAAGA
1 AAGAAAGA-AAA-A
*
68828175 AAGAAAGAAAAT
1 AAGAAAGAAAAA
*
68828187 AA-AAATAAAAA
1 AAGAAAGAAAAA
68828198 A
1 A
68828199 TAAAAAATAG
Statistics
Matches: 75, Mismatches: 6, Indels: 22
0.73 0.06 0.21
Matches are distributed among these distances:
11 20 0.27
12 6 0.08
13 13 0.17
14 24 0.32
15 10 0.13
16 2 0.03
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (12 bp):
AAGAAAGAAAAA
Found at i:68828126 original size:18 final size:16
Alignment explanation
Indices: 68828098--68828166 Score: 96
Period size: 14 Copynumber: 4.7 Consensus size: 16
68828088 TTGAGAAGAA
68828098 GAAAAAAGAAAGAAAG
1 GAAAAAAGAAAGAAAG
68828114 G-AAAAAG-AAGAAA-
1 GAAAAAAGAAAGAAAG
68828127 GAAAAAAGAAAGAAAG
1 GAAAAAAGAAAGAAAG
68828143 G-AAAAAG-AAGAAA-
1 GAAAAAAGAAAGAAAG
68828156 GAAAAAAGAAA
1 GAAAAAAGAAA
68828167 AATAAAGAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
13 2 0.04
14 24 0.50
15 20 0.42
16 2 0.04
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
GAAAAAAGAAAGAAAG
Found at i:68828136 original size:29 final size:29
Alignment explanation
Indices: 68828091--68828166 Score: 145
Period size: 29 Copynumber: 2.7 Consensus size: 29
68828081 CTAGGGTTTG
68828091 AGAAG-AAGAAAAAAGAAAGAAAGGAAAA
1 AGAAGAAAGAAAAAAGAAAGAAAGGAAAA
68828119 AGAAGAAAGAAAAAAGAAAGAAAGGAAAA
1 AGAAGAAAGAAAAAAGAAAGAAAGGAAAA
68828148 AGAAGAAAGAAAAAAGAAA
1 AGAAGAAAGAAAAAAGAAA
68828167 AATAAAGAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
28 5 0.11
29 42 0.89
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (29 bp):
AGAAGAAAGAAAAAAGAAAGAAAGGAAAA
Found at i:68828182 original size:29 final size:29
Alignment explanation
Indices: 68828091--68828198 Score: 123
Period size: 29 Copynumber: 3.8 Consensus size: 29
68828081 CTAGGGTTTG
* *
68828091 AGAAG-AAGAAAAAAGAAAGAAAGGAAAA
1 AGAAGAAAGAAAAAAGAAAAAAAAGAAAA
* *
68828119 AGAAGAAAGAAAAAAGAAAGAAAGGAAAA
1 AGAAGAAAGAAAAAAGAAAAAAAAGAAAA
*
68828148 AGAAGAAAGAAAAAAGAAAAATAAAGAAAG
1 AGAAGAAAGAAAAAAGAAAAA-AAAGAAAA
*
68828178 A-AAGAAA-ATAAAAATAAAAAA
1 AGAAGAAAGA-AAAAAGAAAAAA
68828199 TAAAAAATAG
Statistics
Matches: 73, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
28 7 0.10
29 59 0.81
30 7 0.10
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (29 bp):
AGAAGAAAGAAAAAAGAAAAAAAAGAAAA
Found at i:68828185 original size:25 final size:25
Alignment explanation
Indices: 68828096--68828184 Score: 105
Period size: 25 Copynumber: 3.6 Consensus size: 25
68828086 GTTTGAGAAG
*
68828096 AAGAAA-AAAGAAAGAAAGGAAAAAG
1 AAGAAAGAAAGAAAGAAA-GAAAAAA
68828121 AAGAAAGAAA-AAAGAAAGAAAGGAAA
1 AAGAAAGAAAGAAAGAAAGAAA--AAA
68828147 AAG-AAGAAAGAAA-AAAGAAAAATA
1 AAGAAAGAAAGAAAGAAAGAAAAA-A
68828171 AAGAAAGAAAGAAA
1 AAGAAAGAAAGAAA
68828185 ATAAAAATAA
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
23 2 0.04
24 8 0.14
25 36 0.63
26 11 0.19
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (25 bp):
AAGAAAGAAAGAAAGAAAGAAAAAA
Found at i:68828206 original size:7 final size:7
Alignment explanation
Indices: 68828164--68828214 Score: 50
Period size: 7 Copynumber: 7.0 Consensus size: 7
68828154 AAGAAAAAAG
68828164 AAAAATA
1 AAAAATA
*
68828171 AAGAAAGA
1 AA-AAATA
68828179 AAGAAA-A
1 AA-AAATA
68828186 TAAAAATA
1 -AAAAATA
68828194 AAAAATA
1 AAAAATA
68828201 AAAAATA
1 AAAAATA
*
68828208 GAAAATA
1 AAAAATA
68828215 TAACAGTCGG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
7 26 0.67
8 13 0.33
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:68828217 original size:23 final size:22
Alignment explanation
Indices: 68828100--68828217 Score: 93
Period size: 22 Copynumber: 5.4 Consensus size: 22
68828090 GAGAAGAAGA
* *
68828100 AAAAAGAAAGAAAG-GAAAAAG
1 AAAAATAAAGAAAGAAAAAAAG
* *
68828121 AAGAAAGAAA-AAAGAAAGAAAGG
1 AA-AAATAAAGAAAGAAA-AAAAG
*
68828144 AAAAA-GAAGAAAG-AAAAAAG
1 AAAAATAAAGAAAGAAAAAAAG
*
68828164 AAAAATAAAGAAAGAAAGAAAAT
1 AAAAATAAAGAAAGAAA-AAAAG
*
68828187 AAAAATAAA-AAATAAAAAATAG
1 AAAAATAAAGAAAGAAAAAA-AG
68828209 AAAATATAA
1 AAAA-ATAA
68828218 CAGTCGGGTT
Statistics
Matches: 80, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
20 9 0.11
21 20 0.25
22 28 0.35
23 23 0.29
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (22 bp):
AAAAATAAAGAAAGAAAAAAAG
Found at i:68828348 original size:27 final size:28
Alignment explanation
Indices: 68828306--68828359 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
68828296 CAGGCCGGTC
* *
68828306 CACTCCTGGCCTAACAGTAGCAACCCAG
1 CACTCCTGGCCCAACAGCAGCAACCCAG
68828334 CACT-CTGGCCCAACAGCAGCAACCCA
1 CACTCCTGGCCCAACAGCAGCAACCCA
68828360 TCTAGCAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.30, C:0.43, G:0.17, T:0.11
Consensus pattern (28 bp):
CACTCCTGGCCCAACAGCAGCAACCCAG
Found at i:68830850 original size:49 final size:49
Alignment explanation
Indices: 68830777--68830875 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
68830767 ATGGGGGTAT
* *
68830777 CGGCATTCTAATAGCTAATCCCTTCCTCGTGCGTAACTGACTCCCGAAC
1 CGGCATTCCAATAGCTAATACCTTCCTCGTGCGTAACTGACTCCCGAAC
68830826 CGGCATTCCAATAGCTAATACCTTCCTCGTGCGTAACTGACTCCCGAAC
1 CGGCATTCCAATAGCTAATACCTTCCTCGTGCGTAACTGACTCCCGAAC
68830875 C
1 C
68830876 CTAATTTTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.23, C:0.35, G:0.16, T:0.25
Consensus pattern (49 bp):
CGGCATTCCAATAGCTAATACCTTCCTCGTGCGTAACTGACTCCCGAAC
Found at i:68840015 original size:40 final size:40
Alignment explanation
Indices: 68839963--68840872 Score: 1748
Period size: 40 Copynumber: 22.8 Consensus size: 40
68839953 ATAACCACAA
* * * * *
68839963 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
* *
68840003 ACACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
*
68840043 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840083 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840123 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840163 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840203 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840243 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840283 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840323 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840363 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840403 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840443 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840483 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840523 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840563 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840603 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840643 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840683 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840723 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840763 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840803 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
68840843 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
68840873 GTATTCAAAT
Statistics
Matches: 859, Mismatches: 11, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 859 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
Found at i:68842885 original size:20 final size:21
Alignment explanation
Indices: 68842862--68842913 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 21
68842852 TGGGTTAATC
*
68842862 ACAAGAACTTGAG-GAAAAGT
1 ACAAGAACCTGAGAGAAAAGT
68842882 ACAA-AACCTGAGAGAAAAGT
1 ACAAGAACCTGAGAGAAAAGT
*
68842902 -CAAGGA-CTGAGA
1 ACAAGAACCTGAGA
68842914 CAATGAATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.50, C:0.13, G:0.25, T:0.12
Consensus pattern (21 bp):
ACAAGAACCTGAGAGAAAAGT
Found at i:68843375 original size:74 final size:75
Alignment explanation
Indices: 68843186--68843501 Score: 406
Period size: 75 Copynumber: 4.2 Consensus size: 75
68843176 ACCATTTCCT
* * *
68843186 ATTT-TGTTTTTCAAAAATCAACTCATATTTCGGGAGGTGAGTTGAGCCTCGGGTCGTACGCTGA
1 ATTTCTGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGA
*
68843250 GGTACTTTCA
66 GGTATTTTCA
* *
68843260 ATTTCTGTTTTTCAAAAATCAACTCATATTTCGATAGGTGAGTTGAGCCT-GAGG-CGCACGCTG
1 ATTTCTGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCG-GGTCGCACGCTG
*
68843323 AGGTATTTTTA
65 AGGTATTTTCA
* * *
68843334 ATTTCTGTTTTTCAAAAATCAACTCATAATCCGAGAAGTGAGTTGAGCCTCAGGTCGCACGCTGA
1 ATTTCTGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGA
68843399 GGTATTTTCA
66 GGTATTTTCA
* * * * * *
68843409 ATTTATGTTTTTCAAAGATCAACTCATAATTCAATAGGTGAGTTGAGCTTCGGGTCACACGGC-G
1 ATTTCTGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCAC-GCTG
* **
68843473 AGCTATTTTTT
65 AGGTATTTTCA
*
68843484 ATTTTTGTTTTTCAAAAA
1 ATTTCTGTTTTTCAAAAA
68843502 AAAATTGGAT
Statistics
Matches: 212, Mismatches: 25, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
74 70 0.33
75 140 0.66
76 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (75 bp):
ATTTCTGTTTTTCAAAAATCAACTCATAATTCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGA
GGTATTTTCA
Found at i:68843863 original size:31 final size:30
Alignment explanation
Indices: 68843795--68843937 Score: 164
Period size: 30 Copynumber: 4.8 Consensus size: 30
68843785 ATACAAAATT
* * **
68843795 TAAAATTACATTTTGACCCTCTATTTTTCC
1 TAAAATTATATTTTGACCCTCAAACTTTCC
*
68843825 TAAAATTATATTTTGACCCTCCAAACTTTCT
1 TAAAATTATATTTTGACCCT-CAAACTTTCC
* *
68843856 TAAAATTACATTTTGACCCTCTAACTTTCC
1 TAAAATTATATTTTGACCCTCAAACTTTCC
* * *
68843886 TAAAATTATATATCGACCCT-AAATTTTCC
1 TAAAATTATATTTTGACCCTCAAACTTTCC
*
68843915 TAAAATTATACTTTGACCC-CAAA
1 TAAAATTATATTTTGACCCTCAAA
68843938 AGTTTTTCAC
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
29 26 0.27
30 44 0.46
31 25 0.26
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40
Consensus pattern (30 bp):
TAAAATTATATTTTGACCCTCAAACTTTCC
Found at i:68843864 original size:61 final size:59
Alignment explanation
Indices: 68843794--68843933 Score: 190
Period size: 61 Copynumber: 2.3 Consensus size: 59
68843784 AATACAAAAT
** * *
68843794 TTAAAATTACATTTTGACCCTCTATTTTTCCTAAAATTATATTTTGACCCTCCAAACTTTC
1 TTAAAATTACATTTTGACCCTCTAACTTTCCTAAAATTATATATCGACCCT--AAACTTTC
*
68843855 TTAAAATTACATTTTGACCCTCTAACTTTCCTAAAATTATATATCGACCCTAAATTTTC
1 TTAAAATTACATTTTGACCCTCTAACTTTCCTAAAATTATATATCGACCCTAAACTTTC
* * *
68843914 CTAAAATTATACTTTGACCC
1 TTAAAATTACATTTTGACCC
68843934 CAAAAGTTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
59 24 0.34
61 47 0.66
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.41
Consensus pattern (59 bp):
TTAAAATTACATTTTGACCCTCTAACTTTCCTAAAATTATATATCGACCCTAAACTTTC
Found at i:68844657 original size:9 final size:9
Alignment explanation
Indices: 68844643--68844673 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
68844633 GAGGAAGCCC
*
68844643 AAAAAAAGA
1 AAAAAAATA
68844652 AAAAAAATA
1 AAAAAAATA
68844661 AAAAAAATA
1 AAAAAAATA
68844670 AAAA
1 AAAA
68844674 GGATCAGTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.03, T:0.06
Consensus pattern (9 bp):
AAAAAAATA
Found at i:68847736 original size:46 final size:43
Alignment explanation
Indices: 68847667--68847759 Score: 107
Period size: 46 Copynumber: 2.1 Consensus size: 43
68847657 AACAGATACA
*
68847667 CGGTGGATTCAGCACACAACAACCACCCTTTGTAATCAATGATATT
1 CGGTGGATTCAGCACACAACAACCA-CC-TTATAATCAATGATA-T
* * *
68847713 CGGTGGGA-TCAGCACATATCAACCACCTTATAATTAATGATAT
1 CGGT-GGATTCAGCACACAACAACCACCTTATAATCAATGATAT
68847756 CGGT
1 CGGT
68847760 TCACATAGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
43 5 0.12
44 13 0.31
45 2 0.05
46 19 0.45
47 3 0.07
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
CGGTGGATTCAGCACACAACAACCACCTTATAATCAATGATAT
Found at i:68850062 original size:525 final size:525
Alignment explanation
Indices: 68849221--68850681 Score: 2384
Period size: 525 Copynumber: 2.8 Consensus size: 525
68849211 CTATTTAATT
* *
68849221 AAATTTTTATTTTATAATTTTAATTACTAATGTTTTATAATATAACATACATACTTACTTC-AT-
1 AAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATA-ACCATACATACTTACTTCAATA
* * * *
68849284 ---GGCC--ATATATATTCTAGGTATAATTACTATTTAACCCCTTTAAATTAAGTTCTAGATAT-
65 ACAGACCATATATATATTTTTGGTATAATTACTATTTAACCCCTTTAAATTATGTTCTA-AT-TG
* * * **
68849343 TA-ATTCTTAAGCAAATTACAAGATGACACAACGGGTTTACAGTAGTTTCATGAT-AAAAATAAT
128 TACATCCTTAAGCAAATTACAAGATGACACAATGGATTTACAACAGTTTCATGATAAAAAATAAT
* * * * * * **
68849406 AATTTATAACAAGCTGACACAACGGGTG-AA--AT--TGTC-GTATTAGTTTTTTTTGTTAAAAT
193 ATTTTAGAACAAGTTGACACAATGGGTGAAACCATCATATCAGTGTTTTTTTTTTTTGTTAAAAT
68849465 TGCCTCCGCAACAATTTCATGATAAAAATAATATTTTTATAATAAGACGACATAATGGGTGAAAC
258 TGCCTCCGCAACAATTTCATGATAAAAATAATATTTTTATAATAAGACGACATAATGGGTGAAAC
68849530 CGTCGTATCATGTGGTAGTTTCTCATATAAAAAAAATATTTTTAAAGCCAAACATTACACCCTTT
323 CGTCGTATCATGTGGTAGTTTCTCATATAAAAAAAATATTTTTAAAGCCAAACATTACACCCTTT
68849595 ACATGTTTTAACATTTCCAAAAACAAAAATTTTTAGGGCGTTACACTCTTAAAGCTAAATGTTCC
388 ACATGTTTTAACATTTCCAAAAACAAAAATTTTTAGGGCGTTACACTCTTAAAGCTAAATGTTCC
68849660 TCTCTTCTTTGTCCCTTGGTTCGGTTTGCACAAAGAAAAGGTGGAAATGTTTTGGTTTTTGCCAC
453 TCTCTTCTTTGTCCCTTGGTTCGGTTTGCACAAAGAAAAGGTGGAAATGTTTTGGTTTTTGCCAC
68849725 CTATTCCC
518 CTATTCCC
68849733 AAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATAACCATACATACTTACTTCAATAA
1 AAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATAACCATACATACTTACTTCAATAA
68849798 CAGACCATATATATATTTTTGGTATAATTACTATTTAACCCCTTTAAATTATGTTCTAATTGTAC
66 CAGACCATATATATATTTTTGGTATAATTACTATTTAACCCCTTTAAATTATGTTCTAATTGTAC
68849863 ATCCTTAAGCAAATTACAAGATGACACAATGGATTTACAACAGTTTCATGATAAAAAATAATATT
131 ATCCTTAAGCAAATTACAAGATGACACAATGGATTTACAACAGTTTCATGATAAAAAATAATATT
68849928 TTAGAACAAGTTGACACAATGGGTGAAACCATCATATCAGTGTTTTTTTTTTTTGTTAAAATTGC
196 TTAGAACAAGTTGACACAATGGGTGAAACCATCATATCAGTGTTTTTTTTTTTTGTTAAAATTGC
68849993 CTCCGCAACAATTTCATGATAAAAATAATATTTTTATAATAAGACGACATAATGGGTGAAACCGT
261 CTCCGCAACAATTTCATGATAAAAATAATATTTTTATAATAAGACGACATAATGGGTGAAACCGT
68850058 CGTATCATGTGGTAGTTTCTCATATAAAAAAAATATTTTTAAAGCCAAACATTACACCCTTTACA
326 CGTATCATGTGGTAGTTTCTCATATAAAAAAAATATTTTTAAAGCCAAACATTACACCCTTTACA
68850123 TGTTTTAACATTTCCAAAAACAAAAATTTTTAGGGCGTTACACTCTTAAAGCTAAATGTTCCTCT
391 TGTTTTAACATTTCCAAAAACAAAAATTTTTAGGGCGTTACACTCTTAAAGCTAAATGTTCCTCT
68850188 CTTCTTTGTCCCTTGGTTCGGTTTGCACAAAGAAAAGGTGGAAATGTTTTGGTTTTTGCCACCTA
456 CTTCTTTGTCCCTTGGTTCGGTTTGCACAAAGAAAAGGTGGAAATGTTTTGGTTTTTGCCACCTA
68850253 TTCCC
521 TTCCC
68850258 AAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATAACCATACATACTTACTTCAATAA
1 AAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATAACCATACATACTTACTTCAATAA
68850323 CAGACCATATATATATTTTTGGTATAATTACTATTTAACCCCTTTAAATTATGTTCTAATTGTAC
66 CAGACCATATATATATTTTTGGTATAATTACTATTTAACCCCTTTAAATTATGTTCTAATTGTAC
68850388 ATCCTTAAGCAAATTACAAGATGACACAATGGATTTACAACAGTTTCATGATAAAAAATAATATT
131 ATCCTTAAGCAAATTACAAGATGACACAATGGATTTACAACAGTTTCATGATAAAAAATAATATT
68850453 TTAGAACAAGTTGACACAATGGGTGAAACCATCATATCAGTGTTTTTTTTTTTTGTTAAAATTGC
196 TTAGAACAAGTTGACACAATGGGTGAAACCATCATATCAGTGTTTTTTTTTTTTGTTAAAATTGC
* * * * *
68850518 CTCCGCGACAATATCATGATAAAAATAATAATATTTTTATAATAAGACAACACAATGGGTGAAAT
261 CTCCGCAACAATTTCATGAT--AAA-AATAATATTTTTATAATAAGACGACATAATGGGTGAAAC
* * * *
68850583 CGT-G-A-C-------AGTTTCTCATAT-AAAAAAATATTTTCAATGCTAAACATTACA-CCTTA
323 CGTCGTATCATGTGGTAGTTTCTCATATAAAAAAAATATTTTTAAAGCCAAACATTACACCCTTT
* * * *
68850636 ACATGTTTTAACAGTTCCAAAAACAAAAAATTTTGGGGCATTACAC
388 ACATGTTTTAACATTTCCAAAAACAAAAATTTTTAGGGCGTTACAC
68850682 CCTTGGTTCG
Statistics
Matches: 898, Mismatches: 32, Indels: 34
0.93 0.03 0.04
Matches are distributed among these distances:
511 17 0.02
512 43 0.05
516 50 0.06
517 31 0.03
518 106 0.12
519 33 0.04
520 2 0.00
522 2 0.00
524 3 0.00
525 567 0.63
526 1 0.00
527 4 0.00
528 39 0.04
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (525 bp):
AAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATAACCATACATACTTACTTCAATAA
CAGACCATATATATATTTTTGGTATAATTACTATTTAACCCCTTTAAATTATGTTCTAATTGTAC
ATCCTTAAGCAAATTACAAGATGACACAATGGATTTACAACAGTTTCATGATAAAAAATAATATT
TTAGAACAAGTTGACACAATGGGTGAAACCATCATATCAGTGTTTTTTTTTTTTGTTAAAATTGC
CTCCGCAACAATTTCATGATAAAAATAATATTTTTATAATAAGACGACATAATGGGTGAAACCGT
CGTATCATGTGGTAGTTTCTCATATAAAAAAAATATTTTTAAAGCCAAACATTACACCCTTTACA
TGTTTTAACATTTCCAAAAACAAAAATTTTTAGGGCGTTACACTCTTAAAGCTAAATGTTCCTCT
CTTCTTTGTCCCTTGGTTCGGTTTGCACAAAGAAAAGGTGGAAATGTTTTGGTTTTTGCCACCTA
TTCCC
Found at i:68850086 original size:98 final size:98
Alignment explanation
Indices: 68849900--68850086 Score: 207
Period size: 98 Copynumber: 1.9 Consensus size: 98
68849890 AATGGATTTA
* **
68849900 CAACAGTTTCATGATAAAAAATAATATTTTAGAACAAGTTGACACAATGGGTGAAACCATCATAT
1 CAACAATTTCATGATAAAAAATAATATTTTAGAACAAGACGACACAATGGGTGAAACCATCATAT
* ** * ** *
68849965 CAGTGTTTTTTTTTTTTGTTAAAATTGCCTCCG
66 CAGTGGTAGTTTCTCATGATAAAATTGCCTCCG
* * * * *
68849998 CAACAATTTCATGAT-AAAAATAATATTTTTATAATAAGACGACATAATGGGTGAAACCGTCGTA
1 CAACAATTTCATGATAAAAAATAATA-TTTTAGAACAAGACGACACAATGGGTGAAACCATCATA
68850062 TCATGTGGTAGTTTCTCAT-ATAAAA
65 TCA-GTGGTAGTTTCTCATGATAAAA
68850087 AAAATATTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
97 10 0.14
98 53 0.74
99 9 0.12
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.35
Consensus pattern (98 bp):
CAACAATTTCATGATAAAAAATAATATTTTAGAACAAGACGACACAATGGGTGAAACCATCATAT
CAGTGGTAGTTTCTCATGATAAAATTGCCTCCG
Found at i:68851967 original size:392 final size:393
Alignment explanation
Indices: 68851423--68852150 Score: 1072
Period size: 392 Copynumber: 1.9 Consensus size: 393
68851413 AAAGCTTAAG
* * *
68851423 GTTACACCATTGACATGTTTTAACATTTCCAAAAACAAAAATTTTGGGGCATTACACCCTTAAAG
1 GTTACACCATTGACAAGTTTTAACAATTCCAAAAACAAAAATTTTGCGGCATTACACCCTTAAAG
*
68851488 CCGAACATTCGTCTCTTCTTTCTCCCTTGGTTCGGTTTGCACAAAGAAAAGACGAAAATGGTTTT
66 CCCAACATTCGTCTCTTCTTTCTCCCTTGGTTCGGTTTGCACAAAGAAAAGACGAAAATGGTTTT
* * * * * *
68851553 GTTTTTGCCAGCTACTCCCATTATCACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTT
131 GTCTTTACAAGCTACTCCCATTATCACTTATCTTCTATTTAAATAAATTTTCAATTTATAATTTT
* * *
68851618 CATTACTAATG-TTGTAATATAACATACATGCTTCAATAAAC-G-GC-CATAAAAATTCTAGGTA
196 AATTACTAATGTTTATAATATAACATACATACTTCAAT-AACTGAGCGCATAAAAATTCTAGGTA
* *
68851679 TAATTACTATTTAACCCCTTAAAATTAAGTTCTA-ATTATAAATTCTTAAGCAAAATTACAAGAT
260 TAATTACTATTTAACCCCTTAAAATTAAGTTATAGA-TATAAATCCTTAAG-AAAATTACAAGAT
68851743 GACACAATGGGTGTAACTATCGCATCAGGAAACAGTTTCCCATATAAAAAAAAATATTTTCAAAG
323 GACACAATGGGTGTAACTATCGCATCAGGAAACAGTTTCCCATATAAAAAAAAATATTTTCAAAG
68851808 CCGAAC
388 CCGAAC
* * *
68851814 GTTACACCCTTGACAAGTTTTAACAATTCCAGAAACAAAAATTTTTGCGGCGTTACACCCTTAAA
1 GTTACACCATTGACAAGTTTTAACAATTCCAAAAACAAAAA-TTTTGCGGCATTACACCCTTAAA
* * * * *
68851879 GCCCAACGTTTC-TCTCTTCTTTCTCCCTTGGTTCGGTTTGCACGAAGAAAAGATGGAAATGTTT
65 GCCCAAC-ATTCGTCTCTTCTTTCTCCCTTGGTTCGGTTTGCACAAAGAAAAGACGAAAATGGTT
*
68851943 TTGTCTTTACAAGCTATTCCCATTATCACTTATCTTCTATTTAAATAAATTTTCAATTTATAATT
129 TTGTCTTTACAAGCTACTCCCATTATCACTTATCTTCTATTTAAATAAATTTTCAATTTATAATT
* * * * * *
68852008 TTAATTGCTAATGTTTTATAATATAGCATACATACTTCAATAACTGATCGTATATATATTCTAGG
194 TTAATTACTAATG-TTTATAATATAACATACATACTTCAATAACTGAGCGCATAAAAATTCTAGG
* *
68852073 TATAATTACTATTTAACCCCTTTAAATTAAGTTATAGATATAAATCCTTAAGTAAATTACAAGAT
258 TATAATTACTATTTAACCCCTTAAAATTAAGTTATAGATATAAATCCTTAAGAAAATTACAAGAT
68852138 GACACAATGGGTG
323 GACACAATGGGTG
68852151 AAACCGTCGT
Statistics
Matches: 297, Mismatches: 32, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
391 37 0.12
392 144 0.48
393 6 0.02
394 24 0.08
395 26 0.09
396 59 0.20
397 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (393 bp):
GTTACACCATTGACAAGTTTTAACAATTCCAAAAACAAAAATTTTGCGGCATTACACCCTTAAAG
CCCAACATTCGTCTCTTCTTTCTCCCTTGGTTCGGTTTGCACAAAGAAAAGACGAAAATGGTTTT
GTCTTTACAAGCTACTCCCATTATCACTTATCTTCTATTTAAATAAATTTTCAATTTATAATTTT
AATTACTAATGTTTATAATATAACATACATACTTCAATAACTGAGCGCATAAAAATTCTAGGTAT
AATTACTATTTAACCCCTTAAAATTAAGTTATAGATATAAATCCTTAAGAAAATTACAAGATGAC
ACAATGGGTGTAACTATCGCATCAGGAAACAGTTTCCCATATAAAAAAAAATATTTTCAAAGCCG
AAC
Found at i:68853389 original size:548 final size:545
Alignment explanation
Indices: 68852131--68854278 Score: 2706
Period size: 548 Copynumber: 3.9 Consensus size: 545
68852121 TAAGTAAATT
68852131 ACAAGATGACACAATGGGTGAAACCGTCGTATCAATTTTTTTTGTTAAAATTTCCTCCACAACAA
1 ACAAGATGACACAATGGGTGAAACCGTCGTATCAATTTTTTTTGTTAAAATTTCCTCCACAACAA
* * * * *
68852196 TTTCATGATAATAATAATAATATTTTTATAATAAGACGACGCAATGGGTGAAACCGTCGAATTAG
66 TTTCATGATAAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACCATCGAATCAA
* ** * *
68852261 GTGGCAGTTTCTCTTATAAAAAAAATATTTTCAAAGCTGAACATTACACCTTTGACATGTTTTAA
131 GTGGCAGTTTCTCATAT-AAAAAAATATTTTCAAAGCCAAACATTACACCCTTGACAAGTTTTAA
* * * *
68852326 CATTTCCTAAAACAAGAATTTTTGCGGCGTTACACCCTTAAAGCCCAACGTTCCTCTCTTATTTC
195 CATTTCCAAAAACAA-AAATTTTGGGGCGTTACACCCTTAAAGCCAAACGTTCCTCTCTTATTTC
* * *
68852391 TCACTTGGTTTT-GTTTGCACCAAGAAAAGATGGAAATGTTTTTGTTTTTGCCACCTATTCCCAT
259 TCACTT-GTTTTGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTGACATCTATTCCCAT
* *
68852455 TATTACTTATGTTCTATTTAATTAAATTTTCATATTATAATTTT-ATTACTAATGTTTTATAATA
323 TATCACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATA
* ** * * *
68852519 TAGCATACATACTTACTTCAGCAATCAGCCATATATATATTCTAGGTAGAATGACTATTTAACCC
388 TAACATACATACTTACTTCAATAA-CCGCC--ATATATATTCTAGGTATAATTACTATTTAACCC
* * * * *
68852584 CTTTTAACTTAAGTTCTAATTTTAAATCCTTAAGTAAATTATAAGATGACGCAATGGGTTTACAG
450 C-TTTAAATTAAGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTTTACAG
* * *
68852649 TAGTTCCATGATAAAAATAACAATATTTTATA
514 AAGTTTCATGATAAAAATAATAATATTTTATA
* * * * * *
68852681 ATAAGATGATACAATGGGTGAAATCGTTGTATCAAATTTTTTTTATTAAAATTTCCTCCGCAACA
1 ACAAGATGACACAATGGGTGAAACCGTCGTATC-AATTTTTTTTGTTAAAATTTCCTCCACAACA
* * * * *
68852746 ATTTCATGATAAAAAGAATAATATTTTTATAATAAGACGACACAGTGGGTGTAACCATCGTATGA
65 ATTTCATGATAAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACCATCGAATCA
* * * * ** *
68852811 AGTGGTAGATTCTCATATAAAAAAATATTTTCAAACCCGAATGTTACACCCTTAACAAGTTTTAA
130 AGTGGCAGTTTCTCATATAAAAAAATATTTTCAAAGCCAAACATTACACCCTTGACAAGTTTTAA
* * * * * * * *
68852876 CAATTACAAGAACAAAAACTTTTGGGGTGTTACACCCTTAAAGCCGAATGTTCGTCTCTTCTTTC
195 CATTTCCAAAAACAAAAA-TTTTGGGGCGTTACACCCTTAAAGCCAAACGTTCCTCTCTTATTTC
* * * *
68852941 TC-CTT-TTATTCGGTTTACACAAAAAAAAGATGGAAATGTTTTTGCTTTTGACATCTATTCCCA
259 TCACTTGTT-TT-GGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTGACATCTATTCCCA
* **
68853004 TTATCACTTATGTTCTATTTAATTAAAATTTCATTTTATAATTTTAATTACTAACATTTTATAAT
322 TTATCACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAAT
*
68853069 ATAACATACATACTTACTTCAATAATCCGCCATATATATTCTAGGTATAATTACTATTTAGCCCC
387 ATAACATACATACTTACTTCAATAA-CCGCCATATATATTCTAGGTATAATTACTATTTAACCCC
* ** *
68853134 TTTCAATTAAAATCTAATTATAAATCCTTAAGCAAATTACAAGATGGCACAATGGGTTTACA-AA
451 TTTAAATTAAGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTTTACAGAA
*
68853198 ATTTCATGATAAAAATAATAATATTTTATA
516 GTTTCATGATAAAAATAATAATATTTTATA
* ** * * *
68853228 ACAAGATGACACAACGGGTGAAACTATCGTATTAGTTTTTTTTTTGTTAAAATTGT-CTCCAAAA
1 ACAAGATGACACAATGGGTGAAACCGTCGTATCA--ATTTTTTTTGTTAAAATT-TCCTCCACAA
* * * * * * *
68853292 TAATATCATGATAAAAATAATAATATTTTTATAATAAGACGACAGAATAGGTGACATCATCGTAT
63 CAATTTCATGATAAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACCATCGAAT
* *
68853357 CAGGTGGCAGTTTCTCATATAAAAAAATATTTTCAAAGTCAAACATTACACCCTTGACAAGTTTT
128 CAAGTGGCAGTTTCTCATATAAAAAAATATTTTCAAAGCCAAACATTACACCCTTGACAAGTTTT
*
68853422 AACATTTCCAAAAACAAAAATTTTGGGGGAGTTACACCCTTAAAGCCAAACGTTCCTCTCTTATT
193 AACATTTCCAAAAACAAAAATTTT-GGGGCGTTACACCCTTAAAGCCAAACGTTCCTCTCTTATT
* *
68853487 TCTC-CTTTGGTTTGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTG-CGATGTATTCC
257 TCTCAC-TTGTTTTGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTGAC-ATCTATTCC
* * *
68853550 CATTA-CTACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTAAATTAATAATGTTTTTT
320 CATTATC-ACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTAT
* * *
68853614 AATATAACATACATACTTTCTTCAATAACAGGCC--ATATATTCTTGGTATAATTACTATTTAAC
384 AATATAACATACATACTTACTTCAATAAC-CGCCATATATATTCTAGGTATAATTACTATTTAAC
* * *
68853677 CCCTTTAAATTAAGTTCTAGA-TATAAATCCTTAATCAAATCACAAGATGAGACAATGGGTTTAC
448 CCCTTTAAATTAAGTTCTA-ATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTTTAC
* *
68853741 AGCAGTTTTATGAT--AAA-AATAATATTTTATA
512 AGAAGTTTCATGATAAAAATAATAATATTTTATA
* * ** *
68853772 ACAAGATGACACAATGGGTGAAACCGTTGTATCAATTTTTTTTGTTAAAATTGCCTCCGTAGCAA
1 ACAAGATGACACAATGGGTGAAACCGTCGTATCAATTTTTTTTGTTAAAATTTCCTCCACAACAA
* * * * *
68853837 GTTCATGA-AAATAATAATAATAATAATTTTATAATAGGACGACACAATGGGAGAAACCGTCAAA
66 TTTCATGATAAA-AATAATAAT-AT--TTTTATAATAAGACGACACAATGGGTGAAACCATCGAA
* * * *
68853901 TCAAGTGGCAGTTTCTCATATAAAAATATATTTTCAAAGCCAAACGTTACACCTTTGACATGTTT
127 TCAAGTGGCAGTTTCTCATATAAAAAAATATTTTCAAAGCCAAACATTACACCCTTGACAAGTTT
* * *
68853966 TAACATTTGCAAAAAAATAAAAATTATT---GCGTTACACCCTGAAAGCCAAACGTTCCTCTCTT
192 TAACATTT-C-CAAAAACAAAAATT-TTGGGGCGTTACACCCTTAAAGCCAAACGTTCCTCTCTT
* * *
68854028 ATTTCTCGCTTGGTTTGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTTAC-TACTATT
254 ATTTCTCACTTGTTTTGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTGACAT-CTATT
* *
68854092 CCCATTATCACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTCATTACTAGTGTTTTA
318 CCCATTATCACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTA
* *
68854157 CAATATAACATAC--A--TACTTCAATAACCGGCCATAAATATTCTAGGTATAATTACTATTTAA
383 TAATATAACATACATACTTACTTCAATAACC-GCCATATATATTCTAGGTATAATTACTATTTAA
* * *
68854218 CCCCTTAAAATTCAGTTCTAATTATAAATTCTTAAGCAAATTACAAGATGACACAATGGGT
447 CCCCTTTAAATTAAGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGT
68854279 GTAACTGTCG
Statistics
Matches: 1383, Mismatches: 182, Indels: 74
0.84 0.11 0.05
Matches are distributed among these distances:
540 14 0.01
541 4 0.00
542 119 0.09
543 3 0.00
544 201 0.15
545 102 0.07
546 85 0.06
547 84 0.06
548 376 0.27
549 41 0.03
550 210 0.15
551 144 0.10
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.37
Consensus pattern (545 bp):
ACAAGATGACACAATGGGTGAAACCGTCGTATCAATTTTTTTTGTTAAAATTTCCTCCACAACAA
TTTCATGATAAAAATAATAATATTTTTATAATAAGACGACACAATGGGTGAAACCATCGAATCAA
GTGGCAGTTTCTCATATAAAAAAATATTTTCAAAGCCAAACATTACACCCTTGACAAGTTTTAAC
ATTTCCAAAAACAAAAATTTTGGGGCGTTACACCCTTAAAGCCAAACGTTCCTCTCTTATTTCTC
ACTTGTTTTGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTGACATCTATTCCCATTAT
CACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTATAATATAA
CATACATACTTACTTCAATAACCGCCATATATATTCTAGGTATAATTACTATTTAACCCCTTTAA
ATTAAGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTTTACAGAAGTTTC
ATGATAAAAATAATAATATTTTATA
Found at i:68854492 original size:392 final size:389
Alignment explanation
Indices: 68853907--68854672 Score: 1122
Period size: 392 Copynumber: 2.0 Consensus size: 389
68853897 CAAATCAAGT
* * * * *
68853907 GGCAGTTTCTCATATAAAAATATATTTTCAAAGCCAAACGTTACACCTTTGACATGTTTTAACAT
1 GGCAATTTCCCATATAAAAAAATATTTTCAAAGCCAAACGTTACACCCTTGACATGTTTTAACAA
* *
68853972 TTGCAAAAAAATAAAAATTATTGCGTTACACCCTGAAAGCCAAACGTTCCTCTCTTATTTCTCGC
66 TTCCAAAAAAATAAAAATTATTGCGTTACACCCTGAAAGCCAAACGTTCCTCTCTTATTTCTCCC
* * * *
68854037 TTGGTTTGGTTTGCACGAAGAAAAGATGGAAATGTTTTTGTTTTTTACTACTATTCCCATTATCA
131 TTGGTTCGGATTGCACGAAGAAAAGATGGAAATGATTTTGTTTTTGACTACTATTCCCATTATCA
* *
68854102 CTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTCATTACTAGTGTTTTACAATATAACA
196 CTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTACAATATAACA
*
68854167 TACATACTTCAATAACC-GGCCATAAATATTCTAGGTATAATTACTATTTAACCCCTTAAAATTC
261 TACATACTTCAATAACCAGG-CATAAATATTCTAGGTATAATTACTATTTAACCCCTT-AAATTA
*
68854231 AGTTCTAATTATAAATTCTTAAGCAAATTACAAGATGACACAATGGGTGTAACTGTCGCATTAGG
324 AGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTGTAACTGTCGCATTAGG
68854296 C
389 C
68854297 GGCAATTTCCCATATAAAAAAAATATTTTCAAAGCCAAACGTTACACCCTTGACATGTTTTAACA
1 GGCAATTTCCCATAT-AAAAAAATATTTTCAAAGCCAAACGTTACACCCTTGACATGTTTTAACA
* ** * * * * *
68854362 ATTCCAAAAACA-AAAGCTTTTGTGACGTTACTCCCTTAAAGCCCAACGTTCCTCTCTTCTTTCT
65 ATTCCAAAAAAATAAAAATTAT-TG-CGTTACACCCTGAAAGCCAAACGTTCCTCTCTTATTTCT
* * *
68854426 CCCTTGGTTCGGATTGTACGAAGAAAAGATGGAAATGATTTTGTTTTTGCCTCCTATTCCCATTA
128 CCCTTGGTTCGGATTGCACGAAGAAAAGATGGAAATGATTTTGTTTTTGACTACTATTCCCATTA
* *
68854491 TCACTTATGTTCTATTTAATTAAATTTTTATTTTATAATTTTAATTACTAATGTTTTATAATATA
193 TCACTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTACAATATA
* * * * * * *
68854556 GCATACATACTTCAATAACCAATTGTATATATATTCTAGGTATAATTATTCTTTAACCCCTTTAA
258 ACATACATACTTCAATAACC-A-GGCATAAATATTCTAGGTATAATTACTATTTAACCCCTTAAA
* *
68854621 TTAAGTTCTATTTATAAATCCTTAAGCAAATTACAAGATGATACAATGGGTG
321 TTAAGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTG
68854673 AAACCATCAT
Statistics
Matches: 333, Mismatches: 37, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
390 19 0.06
391 58 0.17
392 172 0.52
393 50 0.15
394 33 0.10
395 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.38
Consensus pattern (389 bp):
GGCAATTTCCCATATAAAAAAATATTTTCAAAGCCAAACGTTACACCCTTGACATGTTTTAACAA
TTCCAAAAAAATAAAAATTATTGCGTTACACCCTGAAAGCCAAACGTTCCTCTCTTATTTCTCCC
TTGGTTCGGATTGCACGAAGAAAAGATGGAAATGATTTTGTTTTTGACTACTATTCCCATTATCA
CTTATGTTCTATTTAATTAAATTTTCATTTTATAATTTTAATTACTAATGTTTTACAATATAACA
TACATACTTCAATAACCAGGCATAAATATTCTAGGTATAATTACTATTTAACCCCTTAAATTAAG
TTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTGTAACTGTCGCATTAGGC
Found at i:68855326 original size:43 final size:43
Alignment explanation
Indices: 68855265--68855427 Score: 204
Period size: 43 Copynumber: 3.8 Consensus size: 43
68855255 CGCTATAGAC
* * *
68855265 AACGCCGTTAAAGATCATGGCCTTTAGCGGCGCTTTTATCACA
1 AACGCCGCTAAAGATCATGACCTTTAGCAGCGCTTTTATCACA
* *
68855308 AACGCCGCTAAAGGTCATGACCTTTAGCAGCGCTTTTACCACA
1 AACGCCGCTAAAGATCATGACCTTTAGCAGCGCTTTTATCACA
**
68855351 AACGCCGCTAAA-AAAATGACCTTTAGCAGCGCTTTTTATCACA
1 AACGCCGCTAAAGATCATGACCTTTAGCAGCGC-TTTTATCACA
* * * *
68855394 AACGCCGCTATAGAACA-AACCTTTAGCAACGCTT
1 AACGCCGCTAAAGATCATGACCTTTAGCAGCGCTT
68855428 CTCGCAAAAA
Statistics
Matches: 105, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
42 19 0.18
43 83 0.79
44 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
AACGCCGCTAAAGATCATGACCTTTAGCAGCGCTTTTATCACA
Found at i:68855445 original size:85 final size:85
Alignment explanation
Indices: 68855285--68855449 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 85
68855275 AAGATCATGG
* ** * * * *
68855285 CCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGGTCATGACCTTTAGCAGCGCTTTTACCAC
1 CCTTTAGCAGCGCTTTTATCACAAACGCCGCTAAAGAACATAACCTTTAGCAACGCTTCTACCAA
68855350 AAACGCCGCTAAAAAAATGA
66 AAACGCCGCTAAAAAAATGA
*
68855370 CCTTTAGCAGCGCTTTTTATCACAAACGCCGCTATAGAACA-AACCTTTAGCAACGCTTCT-CGC
1 CCTTTAGCAGCGC-TTTTATCACAAACGCCGCTAAAGAACATAACCTTTAGCAACGCTTCTAC-C
* *
68855433 AAAAATGTCGCTAAAAA
64 AAAAACGCCGCTAAAAA
68855450 CATAAACTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 1 0.01
85 43 0.63
86 24 0.35
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (85 bp):
CCTTTAGCAGCGCTTTTATCACAAACGCCGCTAAAGAACATAACCTTTAGCAACGCTTCTACCAA
AAACGCCGCTAAAAAAATGA
Found at i:68858953 original size:14 final size:14
Alignment explanation
Indices: 68858916--68858953 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
68858906 AGTTCTGTGA
*
68858916 TTTTATAAAATATT
1 TTTTATAAACTATT
68858930 TTTTAT-AACTATT
1 TTTTATAAACTATT
68858943 TTTTATAAACT
1 TTTTATAAACT
68858954 GGATTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTTATAAACTATT
Found at i:68859687 original size:21 final size:21
Alignment explanation
Indices: 68859663--68859736 Score: 53
Period size: 21 Copynumber: 3.5 Consensus size: 21
68859653 CCTAACCCCC
*
68859663 AAACCTTAAATCCCAACCCTT
1 AAACCTTAAATCCCAACCCAT
* *
68859684 AAACCAT-AATCCCTAATCCAT
1 AAACCTTAAATCCC-AACCCAT
* * *
68859705 AATCCCTAAAT-CCATACCCCCT
1 AAACCTTAAATCCCA-A-CCCAT
68859727 AAACCTTAAA
1 AAACCTTAAA
68859737 ATAGTAATTC
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
20 7 0.17
21 19 0.47
22 14 0.35
ACGTcount: A:0.41, C:0.36, G:0.00, T:0.23
Consensus pattern (21 bp):
AAACCTTAAATCCCAACCCAT
Found at i:68859716 original size:15 final size:15
Alignment explanation
Indices: 68859683--68859720 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
68859673 TCCCAACCCT
68859683 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
68859697 T-AATCCATAATCCC
1 TAAATCCATAATCCC
68859711 TAAATCCATA
1 TAAATCCATA
68859721 CCCCCTAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 12 0.55
15 8 0.36
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:68859726 original size:15 final size:15
Alignment explanation
Indices: 68859677--68859729 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 15
68859667 CTTAAATCCC
*
68859677 AACCCTTAAA-CCAT
1 AACCCCTAAATCCAT
*
68859691 AATCCCT-AATCCAT
1 AACCCCTAAATCCAT
*
68859705 AATCCCTAAATCCAT
1 AACCCCTAAATCCAT
*
68859720 ACCCCCTAAA
1 AACCCCTAAA
68859730 CCTTAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 2 0.06
14 16 0.48
15 15 0.45
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.23
Consensus pattern (15 bp):
AACCCCTAAATCCAT
Found at i:68859938 original size:14 final size:14
Alignment explanation
Indices: 68859919--68859953 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
68859909 AATCCTCAAT
68859919 CCCTAAC-TCTTAAC
1 CCCTAACGTC-TAAC
68859933 CCCTAACGTCTAAC
1 CCCTAACGTCTAAC
68859947 CCCTAAC
1 CCCTAAC
68859954 CCCTAAACGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 18 0.90
15 2 0.10
ACGTcount: A:0.29, C:0.46, G:0.03, T:0.23
Consensus pattern (14 bp):
CCCTAACGTCTAAC
Found at i:68860456 original size:41 final size:41
Alignment explanation
Indices: 68860394--68860695 Score: 408
Period size: 41 Copynumber: 7.4 Consensus size: 41
68860384 TTTTATAAAC
* * * *
68860394 ACGCTGCTAAATCCCAGAGCATTAGCAGCGCTTTCCCAAAA
1 ACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCCCAAAA
* *
68860435 ACGTCGCTAAAGCCCCGAGCATTAGTGGCGCTTTCCCAAAA
1 ACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCCCAAAA
** * *
68860476 ACGCCGCTAAAGCCCCGAGCATTAGCGATGCTTTTCTAAAA
1 ACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCCCAAAA
*
68860517 ACGCCGCTAAAGCCCCGAGCATTAGCGACGCTTTCCCAAAA
1 ACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCCCAAAA
*
68860558 ACGCCGCTAAAGCCCCGAGCATTAGCGGCG-TATTTCCAAAA
1 ACGCCGCTAAAGCCCCGAGCATTAGCGGCGCT-TTCCCAAAA
* * * **
68860599 AGGCCGCTAAAGCCCAGAGCATTAGCGGCACTTTCTAAAAA
1 ACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCCCAAAA
* *
68860640 ACGCCGCTAAAGCCCCGAGCATTAGTGGCGCTTTTCCAAAA
1 ACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCCCAAAA
*
68860681 ACCCCGCTAAAGCCC
1 ACGCCGCTAAAGCCC
68860696 AAAAAGGACG
Statistics
Matches: 228, Mismatches: 31, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
40 1 0.00
41 226 0.99
42 1 0.00
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.18
Consensus pattern (41 bp):
ACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTTCCCAAAA
Found at i:68862287 original size:548 final size:551
Alignment explanation
Indices: 68861305--68862546 Score: 1756
Period size: 548 Copynumber: 2.3 Consensus size: 551
68861295 TAATTACTAA
* * *
68861305 TACTAACTTCATTAACCGGCCAGT-TATATATTCTAGGTATAATTTCTATTTAACCCCTTTAAAT
1 TACTTACTTCAATAACCGGCCA-TATATATATT-TAGGTATAATTACTATTTAACCCCTTTAAAT
* * * * * *
68861369 TAAGTTCTAATTATACATTCTTAAGCAAATTACAAGATGACACAATGAGATTACAAGAGTTCCAT
64 TAAGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTTTACAACAGTTTCAT
68861434 GATAAAAATAATAATATTTTATAACAAAATGACAAAATCGGTGAAAGCGTCGTATCAATTTTTTT
129 GATAAAAATAATAATATTTTATAACAAAATGACAAAATCGGTGAAAGCGTCGTATCAATTTTTTT
* * * *
68861499 TTGTTAAAATTGCCTCTGCAACAATTTCATAATAATAATAATAATAATATTTTTATAATAAAACG
194 TTGTTAAAATTGCCTCCGAAACAATATCATAATAATAATAATAATAATATTTTTATAATAAAACA
* *
68861564 ACACAATGGGTGAAACCGTCAAATCAGGCAGCAGTTTCTTACATAAAAAAATATTTTCAAAGCCA
259 ACACAATGGATGAAACCGTCAAATCAGGCAGCAGTTTCTTACATAAAAAAATATTTACAAAGCCA
* *
68861629 AACATTACACTCTTGACAAGTTTTAACAATTCCAAGAACAAAATTTTTTAGGGCGTTACACCTTT
324 AACATTACACTCTTGACAAGTTTTAACAATTCCAAAAACAAAATTTTTTAGGGCGTTACACCCTT
* *
68861694 AAAGATGAATGTTCGTTTCTTCTTTCTCCCTTTGTTCGGTTTGCACGAA-AAAAGGATGGAAATG
389 AAAGATGAATGTTCGTCTCTTCTTTCTCCCTTGGTTCGGTTTGCACGAAGAAAA-GATGGAAATG
68861758 TTTTTGTTTTT-CCCAGCTATTCCCATTATCACTTATGTTCTATTTAATTAAAATTTCATTTTAT
453 TTTTTGTTTTTGCCCA-CTATTCCCATTATCACTTATGTTCTATTTAATTAAAATTTCATTTTAT
68861822 AATTTTAATTACTAACGTTTTATAATATAACATAC
517 AATTTTAATTACTAACGTTTTATAATATAACATAC
* * *
68861857 TTACTTACTTCAATAACCAGCCATATATATA-TTAGGTATAATTACTATTTAGCCCCTTTCAATT
1 -TACTTACTTCAATAACCGGCCATATATATATTTAGGTATAATTACTATTTAACCCCTTTAAATT
* * *
68861921 AAGATCTAATTATAAATCCTTAAGCAAATTATAAGATGGCACAATGGGTTTACAACAGTTTCATG
65 AAGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTTTACAACAGTTTCATG
* * * * * *
68861986 ATAAAAATAATAATATTTTATAACAAGATGACACAATGGGTGAAA-CTGTTGTATTAGTTTTTTT
130 ATAAAAATAATAATATTTTATAACAAAATGACAAAATCGGTGAAAGC-GTCGTATCAATTTTTTT
* *
68862050 TTGTTAAAATTGCCTCCGAAACAATATCATGAT-A-AA-AATAATAATATTTTTATAATAAGACA
194 TTGTTAAAATTGCCTCCGAAACAATATCATAATAATAATAATAATAATATTTTTATAATAAAACA
* * * * *
68862112 ACATAATGGATGAAACCGTCGAATCAGGCGGCAGTTTC-TCCTATAAAAAAATATTTACAAAGTC
259 ACACAATGGATGAAACCGTCAAATCAGGCAGCAGTTTCTTAC-ATAAAAAAATATTTACAAAGCC
* * * * * *
68862176 AAACGTTACAC-CATTGACATGTTTTAACATTTGCAAAAAGAAAATTTTTTGGGGCGTTACACCC
323 AAACATTACACTC-TTGACAAGTTTTAACAATTCCAAAAACAAAATTTTTTAGGGCGTTACACCC
68862240 TTAAAG-TCGAATGTTCGTCTCTTCTTTCTCCCTTGGTTCGGTTTGCACGAAGAAAAGATGGAAA
387 TTAAAGAT-GAATGTTCGTCTCTTCTTTCTCCCTTGGTTCGGTTTGCACGAAGAAAAGATGGAAA
* * *
68862304 TGTTTTTGTTTTTGCCTACTATTCCCATTATCACTTATGTTCTATTTAATTAAAATTTCCTTTTT
451 TGTTTTTGTTTTTGCCCACTATTCCCATTATCACTTATGTTCTATTTAATTAAAATTTCATTTTA
* *
68862369 TAATTTTCATTACTAATGTTTTATAATATAACATAC
516 TAATTTTAATTACTAACGTTTTATAATATAACATAC
* *
68862405 -A--TACTTCAATAACCGGCCATATATATATTTTGGGTATAATTACTATTTAACCCCTTAAAATT
1 TACTTACTTCAATAACCGGCCATATATATA-TTTAGGTATAATTACTATTTAACCCCTTTAAATT
* * * * * * * *
68862467 AAGTTCTAGTTATAAATCCTTAATCAAATTACAAGATGACGCAATGGGTTTATAGCACTCTCATA
65 AAGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTTTACAACAGTTTCATG
*
68862532 ATAATAATAATAATA
130 ATAAAAATAATAATA
68862547 ATAATATTAT
Statistics
Matches: 614, Mismatches: 66, Indels: 25
0.87 0.09 0.04
Matches are distributed among these distances:
544 25 0.04
546 98 0.16
547 4 0.01
548 279 0.45
549 9 0.01
550 2 0.00
551 170 0.28
552 2 0.00
553 25 0.04
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (551 bp):
TACTTACTTCAATAACCGGCCATATATATATTTAGGTATAATTACTATTTAACCCCTTTAAATTA
AGTTCTAATTATAAATCCTTAAGCAAATTACAAGATGACACAATGGGTTTACAACAGTTTCATGA
TAAAAATAATAATATTTTATAACAAAATGACAAAATCGGTGAAAGCGTCGTATCAATTTTTTTTT
GTTAAAATTGCCTCCGAAACAATATCATAATAATAATAATAATAATATTTTTATAATAAAACAAC
ACAATGGATGAAACCGTCAAATCAGGCAGCAGTTTCTTACATAAAAAAATATTTACAAAGCCAAA
CATTACACTCTTGACAAGTTTTAACAATTCCAAAAACAAAATTTTTTAGGGCGTTACACCCTTAA
AGATGAATGTTCGTCTCTTCTTTCTCCCTTGGTTCGGTTTGCACGAAGAAAAGATGGAAATGTTT
TTGTTTTTGCCCACTATTCCCATTATCACTTATGTTCTATTTAATTAAAATTTCATTTTATAATT
TTAATTACTAACGTTTTATAATATAACATAC
Found at i:68865423 original size:21 final size:21
Alignment explanation
Indices: 68865398--68865441 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
68865388 ATCTTCGAGG
68865398 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
68865419 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
68865440 AT
1 AT
68865442 GTAATCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:68865447 original size:19 final size:19
Alignment explanation
Indices: 68865397--68865452 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
68865387 AATCTTCGAG
68865397 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
68865416 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
68865437 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
68865453 AGATACGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:68865468 original size:23 final size:23
Alignment explanation
Indices: 68865441--68865486 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
68865431 AGATATGATA
*
68865441 TGTAATCTTAGAAGATACGATTT
1 TGTAATCTTAGAAGATACAATTT
68865464 TGTAATCTTAGAAGATACAATTT
1 TGTAATCTTAGAAGATACAATTT
68865487 CTTAAATCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.39
Consensus pattern (23 bp):
TGTAATCTTAGAAGATACAATTT
Found at i:68871101 original size:44 final size:43
Alignment explanation
Indices: 68870929--68871237 Score: 123
Period size: 44 Copynumber: 7.0 Consensus size: 43
68870919 GGTTAAGAAT
* *
68870929 CGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAGGA
1 CGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGA
* * * * * *
68870972 CGGCAAATCTTATCTTTCC-AAG-A-TACTGGGAAGCAGATTTAAGCCA
1 C-GTAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGTAGATTGAAG--A
** * * * * * *
68871018 CCAAG-CCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGA
1 CGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGA
* *
68871060 TTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGAAGATTGAAGA
1 -CGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGA
* * * * *
68871104 CGACAAATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA
1 CG-TAGATCTTATC-TCCCTAAGCAGTAGT-GG-AGTAGATTGAAG--A
** * * * * * *
68871150 CCAAG-CCTTGTCTCCCTAAGCAGCAGCGAAGTAGGTTGAAGA
1 CGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGA
* *
68871192 TTGTAGATCTTATCTCCCTAAGCAGTAGTGGA-TCAGATCGAAGA
1 -CGTAGATCTTATCTCCCTAAGCAGTAGTGGAGT-AGATTGAAGA
68871236 CG
1 CG
68871238 GCAAATCATA
Statistics
Matches: 183, Mismatches: 60, Indels: 46
0.63 0.21 0.16
Matches are distributed among these distances:
42 9 0.05
43 20 0.11
44 134 0.73
45 13 0.07
46 7 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (43 bp):
CGTAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGA
Found at i:68871125 original size:132 final size:132
Alignment explanation
Indices: 68870888--68871300 Score: 675
Period size: 132 Copynumber: 3.1 Consensus size: 132
68870878 GTGAAACACT
* * *
68870888 AAGCCTTGTCTCCCTGAGCAACAGCAGAGTAGGTT-AAGAATCGTAGATCTTATCTCCCTAAGCA
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAG-ATTGTAGATCTTATCTCCCTAAGCA
* * *
68870952 GTAGTGGAGTAGATCGAGGACGGCAAATCTTATCTTTCCAAGATACTGGGAAGCAGATTTAAGCC
65 GTAGTGGAGAAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
68871017 ACC
130 ACC
68871020 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
68871085 TAGTGGAGAAGATTGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGAAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
68871150 CC
131 CC
* *
68871152 AAGCCTTGTCTCCCTAAGCAGCAGCGAAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
** * *
68871217 TAGTGGATCAGATCGAAGACGGCAAATCATATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGAAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
68871282 CC
131 CC
*
68871284 AAACCTTGTCTCCCTGA
1 AAGCCTTGTCTCCCTGA
68871301 AGTTGCAGTG
Statistics
Matches: 262, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 259 0.99
133 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGAAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:68871846 original size:217 final size:217
Alignment explanation
Indices: 68871292--68872088 Score: 1153
Period size: 217 Copynumber: 3.7 Consensus size: 217
68871282 CCAAACCTTG
*
68871292 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGATATG--GAG
1 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCGGATCTTATCTCTCTGAAG-T-TGCAGAG
* *
68871355 AGCAGATCGCATCTAGTATTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
64 AGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTA
**
68871420 TCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCT-AAGTCACAGTGG
129 TCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGG
* *
68871484 AGCAGATTAAAGCTGGTAATCCTA
194 AGCAGATTAAAGCCGATAATCCTA
* * *
68871508 TCTCGCTGAAGTTGCAGT-GAACGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
1 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCGGATCTTATCTCTCTGAAGTTGCAGAGAG
*
68871572 CAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC
66 CAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC
* * * *
68871637 CTCCTGAAGTTGCAGTGAGCCAGACTGAAGATGGTAAATCTTATCTCCCTGAGGTTGTAGTGGAG
131 CTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
*
68871702 CAGATTAAAGCCGACAATCCTA
196 CAGATTAAAGCCGATAATCCTA
* * * * *
68871724 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTTTGAAGTTGTAGAGAG
1 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCGGATCTTATCTCTCTGAAGTTGCAGAGAG
* * *
68871789 CAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCAAGTCTTATC
66 CAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC
*
68871854 CTCCTGAAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
131 CTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
*
68871919 CAGGTTAAAGCCGATAATCCTA
196 CAGATTAAAGCCGATAATCCTA
* * * *
68871941 TCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACC-CTGGATCTTATCTCTCCGGAGTTGCAGAGA
1 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTC-GGATCTTATCTCTCTGAAGTTGCAGAGA
* * * *
68872005 GCAGATCGCATCAAGTCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAG-ATGGCAAATC
65 GCAGATCGCATCTAGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAGTC
68872067 TTAT-CTCCCTGAAGTTGCAGTG
126 TTATCCT-CCTGAAGTTGCAGTG
68872089 GAGCAGGTTA
Statistics
Matches: 524, Mismatches: 47, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
213 2 0.00
214 1 0.00
215 150 0.29
216 67 0.13
217 276 0.53
218 28 0.05
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (217 bp):
TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCGGATCTTATCTCTCTGAAGTTGCAGAGAG
CAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC
CTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
CAGATTAAAGCCGATAATCCTA
Found at i:68871851 original size:84 final size:88
Alignment explanation
Indices: 68871717--68872525 Score: 232
Period size: 89 Copynumber: 9.3 Consensus size: 88
68871707 TAAAGCCGAC
* * * * *
68871717 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTAT-CTCTTTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCCTC-CTGAAGTT
* * *
68871781 GTAGAGA-GCAGA-T-CACAT-CT
65 GCAGAGAGGCAGACTGAACATACA
* *
68871801 AGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCA-AG-TCTTATCCTCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAGCACAGATCTTATCCTCCTGAAGT
* *
68871864 TGCAGTGAGGCAGACTGAAGATAGCA
64 TGCAGAGAGGCAGACTGAACATA-CA
* * * * *
68871890 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTTAAAGC-CGATAATCCTATCTTCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCAC-A-GATCTTATCCTCCTGAAGT
* * * ** *
68871953 TGCAGTGGAGTG--GA-TTAAAACCCTG
64 TGCAG-AGAG-GCAGACTGAACATAC-A
* * * *** *
68871978 GATCTTATCTCTCC-GGAGTTGCAG-AGAGCAGA-TCGCATCA-AG-TCTTATCCTCCTGAAGTT
1 AATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCCTCCTGAAGTT
* * * *
68872038 GCAGTGAGGTAGACTGAAGATGGCA
65 GCAGAGAGGCAGACTGAACAT-ACA
* * * * *
68872063 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-GTTAAAGC-CGATAATCCTATCTTCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCAC-A-GATCTTATCCTCCTGAAGT
* * * * * *
68872126 TACAGTGGAGTG--GATTAAAACCT-TA
64 TGCAG-AGAG-GCAGACT-GAACATACA
* * * * *
68872151 GATCTTATCTCTCTAAAGTTGCAG-AGAGCAGA-T---CGCATCTAG-TCTTAT-CTCCCTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCA-C-AGATCTTATCCT-CCTGAAG
* * *
68872209 TTGCAGTG-GAGTAGACT-AA-GTAATCA
63 TTGCAGAGAG-GCAGACTGAACAT-A-CA
* * * *
68872235 AGTCTTATC-CTCCTAAAGTTGCAGT-GAGGAAGACTAAAGATG-GC-GAATCTTAT-CTCCCTG
1 AATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTAAA-A-GCACAG-ATCTTATCCT-CCTG
* * * * * * *
68872295 AAGTTGCAGTGGGGCATATTAAATAAACA
60 AAGTTGCAGAGAGGCAGACTGAACATACA
* * * * *
68872324 AATCCTGTCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTAT-CTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCCTC-CTGAAGTT
* * *
68872388 GCAGTAGA-GTAGA-T-CACAT-CG
65 GCAG-AGAGGCAGACTGAACATACA
* * * * *
68872409 AGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCA-AG-TCTTATCCCCCTCAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT--A-AAAGCACAGATCTTATCCTCCTGAAG
* * * * * *
68872472 TTGCAGTGGGGCATACTAAATAAACA
63 TTGCAGAGAGGCAGACTGAACATACA
* * *
68872498 AATCATGTCTCCCT-AAGTTGTAGTGGAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAG
68872526 TAGATTAGAG
Statistics
Matches: 532, Mismatches: 124, Indels: 134
0.67 0.16 0.17
Matches are distributed among these distances:
81 1 0.00
82 5 0.01
83 6 0.01
84 118 0.22
85 68 0.13
86 44 0.08
87 31 0.06
88 93 0.17
89 147 0.28
90 16 0.03
91 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (88 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAGCACAGATCTTATCCTCCTGAAGTTG
CAGAGAGGCAGACTGAACATACA
Found at i:68871901 original size:173 final size:173
Alignment explanation
Indices: 68871717--68872216 Score: 561
Period size: 173 Copynumber: 2.9 Consensus size: 173
68871707 TAAAGCCGAC
* * * *
68871717 AATCCTATCTCCCTGAAGTTGCAGTGGAGC-GGATTAAAATC-ACAGATCTTATC-TCTTTGAAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG-TTAAAACCGACA-ATCCTATCTTC-CTGAAG
* * * *
68871779 TTGTAG-AGAGCAGA-TCACA-TCTAG-TCTTATCTC-CCTGAAGTTGCA-ATGGAGCAGACTAA
63 TTGCAGTAGAGCAGATTAAAACCCTAGATCTTATCTCTCC-GAAGTTGCAGA--GAGCAGA-T-A
68871838 GCAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATAGCA
123 GC-AGCAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATAGCA
* *
68871890 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGACAATCCTATCTTCCTGAAGTTG
* ** * * * *
68871955 CAGTGGAGTGGATTAAAACCCTGGATCTTATCTCTCCGGAGTTGCAGAGAGCAGATCGCATCAAG
66 CAGTAGAGCAGATTAAAACCCTAGATCTTATCTCTCCGAAGTTGCAGAGAGCAGATAGCAGCAAG
* *
68872020 TCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATGGCA
131 TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATAGCA
* * *
68872063 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGACAATCCTATCTTCCTGAAGTTG
* ** * ** * * *
68872128 CAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCTAG
66 CAGTAGAGCAGATTAAAACCCTAGATCTTATCTCTCCGAAGTTGCAGAGAGCAGATAGCAGCAAG
68872193 TCTTAT-CTCCCTGAAGTTGCAGTG
131 TCTTATCCT-CCTGAAGTTGCAGTG
68872217 GAGTAGACTA
Statistics
Matches: 291, Mismatches: 26, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
172 2 0.01
173 242 0.83
174 13 0.04
175 4 0.01
176 10 0.03
177 17 0.06
178 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (173 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAACCGACAATCCTATCTTCCTGAAGTTG
CAGTAGAGCAGATTAAAACCCTAGATCTTATCTCTCCGAAGTTGCAGAGAGCAGATAGCAGCAAG
TCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATAGCA
Found at i:68872091 original size:390 final size:391
Alignment explanation
Indices: 68871586--68872480 Score: 1208
Period size: 390 Copynumber: 2.3 Consensus size: 391
68871576 TTGCATCTAG
* * * *
68871586 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGC
1 TCTTATCTCTCC-GAAGTTGCAGTAGAGCAGA-TCA--CATCAAGTCTTATCCTCCTGAAGTTGC
* * * *
68871650 AGTGAGCCAGACTGAAGATGGTAAATCTTATCTCCCTGAGGTTGTAGTGGAGCAGATTAAAGCCG
62 AGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG
* * * *
68871715 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCACAGATCTTATCTCTTTGAAGT
127 ACAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGT
*
68871780 TGTAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCA
192 TGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCA
* * *
68871845 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTT
257 AGTCTTATCCTCCTAAAGTTGCAGTGAGGAAGACTAAAGATAGCAAATCTTATCTCCCTGAAGTT
* ** * *
68871910 GCAGTGGAGCAGGTT-AA-AGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
322 GCAGTGGAGCAGATTAAATAAAC-A-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
*
68871973 CC-CTGGA
385 CCAC-AGA
* *
68871980 TCTTATCTCTCCGGAGTTGCAG-AGAGCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGCAGTG
1 TCTTATCTCTCCGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCCTCCTGAAGTTGCAGTG
* * *
68872044 AGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAA
66 AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAA
* * **
68872109 TCCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTAAAGTTGCA
131 TCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCA
* * * * *
68872174 GAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAATCAAGTC
196 GAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCAAGTC
* *
68872239 TTATCCTCCTAAAGTTGCAGTGAGGAAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTGCAG
261 TTATCCTCCTAAAGTTGCAGTGAGGAAGACTAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAG
* * *
68872304 TGGGGCATATTAAATAAACAAATCCTGTCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAG
326 TGGAGCAGATTAAATAAACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAG
68872369 A
391 A
* * * *
68872370 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCACATCGAGTCTTATCTTCCTGAAGTTGCAGTG
1 TCTTATCTCTCCGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCCTCCTGAAGTTGCAGTG
* ** * * * *
68872435 -GAGCAGACTCAAGAAAGCAAGTCTTATCCCCCTCAAATTGCAGTGG
66 AG-GCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGG
68872481 GGCATACTAA
Statistics
Matches: 440, Mismatches: 55, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
390 332 0.75
391 78 0.18
392 3 0.01
393 7 0.02
394 18 0.04
395 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (391 bp):
TCTTATCTCTCCGAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCCTCCTGAAGTTGCAGTG
AGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAA
TCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCA
GAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCAAGTC
TTATCCTCCTAAAGTTGCAGTGAGGAAGACTAAAGATAGCAAATCTTATCTCCCTGAAGTTGCAG
TGGAGCAGATTAAATAAACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAG
A
Found at i:68872124 original size:217 final size:213
Alignment explanation
Indices: 68871292--68872392 Score: 1015
Period size: 217 Copynumber: 5.1 Consensus size: 213
68871282 CCAAACCTTG
* *
68871292 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGATATG--GAG
1 TCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACCCTGGATCTTATCTCTCTGAAG-T-TGCAGAG
*
68871355 AGCAGATCGCATCTAGTATTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAG-TAAGCAAGTCTT
64 AGCAGATCGCATCTAGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTAAGAT-AGCAAGTCTT
* * * **
68871419 ATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCT-AAGTCACAGTG
127 ATCCTCCTGAAGTTGCAGTGA-GCAGATTAAAGA-CG-AAATCTTATCTCCCTGAAGTTGCAGTG
* * *
68871483 GAGCAGATTAAAGCTGGTAATCCTA
189 GAGCAGGTTAAAGCCGATAATCCTA
* * *
68871508 TCTCGCTGAAGTTGCAGT-GAACGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
1 TCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACCCTGGATCTTATCTCTCTGAAGTTGCAGAGAG
*
68871572 CAGATTGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-TAAGCAAGTCTTAT
66 CAGATCGCATCTAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAT-AGCAAGTCTTAT
* * * * *
68871636 CCTCCTGAAGTTGCAGTGAGCCAGACTGAAGATGGTAAATCTTATCTCCCTGAGGTTGTAGTGGA
129 CCTCCTGAAGTTGCAGTGAG-CAGATTAAAGA-CG-AAATCTTATCTCCCTGAAGTTGCAGTGGA
* *
68871701 GCAGATTAAAGCCGACAATCCTA
191 GCAGGTTAAAGCCGATAATCCTA
* * * * *
68871724 TCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCAC-AGATCTTATCTCTTTGAAGTTGTAGAGA
1 TCTCTCTGAAGTTGCAGTGGAGCGGATTAAAA-CCCTGGATCTTATCTCTCTGAAGTTGCAGAGA
* *
68871788 GCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCA-AGCAAGTCTTA
65 GCAGATCGCATCTAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTAAG-ATAGCAAGTCTTA
* * *
68871852 TCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGG
128 TCCTCCTGAAGTTGCAGTGA-GCAGATTAAAGA-CG-AAATCTTATCTCCCTGAAGTTGCAGTGG
68871917 AGCAGGTTAAAGCCGATAATCCTA
190 AGCAGGTTAAAGCCGATAATCCTA
* * *
68871941 TCT-TCCTGAAGTTGCAGTGGAGTGGATTAAAACCCTGGATCTTATCTCTCCGGAGTTGCAGAGA
1 TCTCT-CTGAAGTTGCAGTGGAGCGGATTAAAACCCTGGATCTTATCTCTCTGAAGTTGCAGAGA
* * * *
68872005 GCAGATCGCATCAAGTCTTATCCTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATGGCAAATCTT
65 GCAGATCGCATCTAGTCTTAT-CTCCTGAAGTTGCAGTGGA-GCAGACT-AAGATAGCAAGTCTT
* * * * *
68872069 AT-CTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTACAGTG
127 ATCCT-CCTGAAGTTGCAGT-GAGCAGATTAAAGACGA-AATCTTATCTCCCTGAAGTTGCAGTG
* * * *
68872133 GAG-TGGATTAAAACC-TTAGATCTTA
189 GAGCAGG-TTAAAGCCGATA-ATCCTA
* * * *** * * * *
68872158 TCTCTCTAAAGTTGCAG-AGAGCAGA-TCGCA-TCTAG-TCTTATCTCCCTGAAGTTGCAGTGGA
1 TCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACCCTGGATCTTATCTCTCTGAAGTTGCAG-AGA
* * * * * * *
68872219 GTAGACTAAGTAATCAAGTCTTATCCTCCTAAAGTTGCAGT-GAGGAAGACTAAAGATGGCGAA-
65 GCAGA-T-CG-CATCTAGTCTTAT-CTCCTGAAGTTGCAGTGGA-GCAGACT-AAGATAGC-AAG
* * * * *
68872282 TCTTAT-CTCCCTGAAGTTGCAGTGGGGCATATTAAATAAAC-AAATCCTGTCTCCCTGAAGTTG
123 TCTTATCCT-CCTGAAGTTGCAGT-GAGCAGATT-AA-AGACGAAATCTTATCTCCCTGAAGTTG
* * *
68872345 CAGTGGAGC-GGATTAAAACC-ACAGATCTTA
184 CAGTGGAGCAGG-TTAAAGCCGATA-ATCCTA
68872375 TCTCTCTGAAGTTGCAGT
1 TCTCTCTGAAGTTGCAGT
68872393 AGAGTAGATC
Statistics
Matches: 770, Mismatches: 84, Indels: 60
0.84 0.09 0.07
Matches are distributed among these distances:
213 21 0.03
214 11 0.01
215 150 0.19
216 80 0.10
217 459 0.60
218 45 0.06
219 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (213 bp):
TCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACCCTGGATCTTATCTCTCTGAAGTTGCAGAGAG
CAGATCGCATCTAGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTAAGATAGCAAGTCTTATCC
TCCTGAAGTTGCAGTGAGCAGATTAAAGACGAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGG
TTAAAGCCGATAATCCTA
Found at i:68872225 original size:173 final size:173
Alignment explanation
Indices: 68871843--68872260 Score: 657
Period size: 173 Copynumber: 2.4 Consensus size: 173
68871833 ACTAAGCAAG
*
68871843 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATAGCAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATAGCAAATCTTATCTCCCTGAAG
*
68871908 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAA
66 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAA
* **
68871973 CCCTGGATCTTATCTCTCCGGAGTTGCAGAGAGCAGATCGCAT
131 CCCTAGATCTTATCTCTCCAAAGTTGCAGAGAGCAGATCGCAT
*
68872016 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAG
1 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATAGCAAATCTTATCTCCCTGAAG
68872081 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAA
66 TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAA
* *
68872146 CCTTAGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGCAT
131 CCCTAGATCTTATCTCTCCAAAGTTGCAGAGAGCAGATCGCAT
* * *
68872189 CTAGTCTTAT-CTCCCTGAAGTTGCAGTG-GAGTAGACT-AAG-TAATCAAGTCTTATC-CTCCT
1 CAAGTCTTATCCT-CCTGAAGTTGCAGTGAG-GTAGACTGAAGAT-AGCAAATCTTATCTC-CCT
*
68872249 AAAGTTGCAGTG
62 GAAGTTGCAGTG
68872261 AGGAAGACTA
Statistics
Matches: 228, Mismatches: 13, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
171 2 0.01
172 30 0.13
173 196 0.86
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (173 bp):
CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATAGCAAATCTTATCTCCCTGAAG
TTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTTCCTGAAGTTACAGTGGAGTGGATTAAAA
CCCTAGATCTTATCTCTCCAAAGTTGCAGAGAGCAGATCGCAT
Found at i:68872301 original size:45 final size:43
Alignment explanation
Indices: 68871373--68872480 Score: 337
Period size: 44 Copynumber: 25.5 Consensus size: 43
68871363 GCATCTAGTA
* * *
68871373 TTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAG-AATCAAGTC
* *
68871417 TTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GAAGACT-AAGAAT--CAAGTC
** * * * *
68871462 TTATCTCCCT-AAGTCACAGTGGAGCAGATTAA-AGCTGGTAA-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGA-AT--CAAGTC
* * * * * **
68871505 CTATCTCGCTGAAGTTGCAGT-GA-ACGGATTAA-AACCTTGGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGA-AGACTAAGAATC-AAG-TC
* * * * * *
68871548 TTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-TGCATCTAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAATCAAGTC
* *
68871588 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAG-AATCAAGTC
* * *
68871632 TTATC-CTCCTGAAGTTGCAGT-GAGCCAGACTGAAG-ATGGTAAATC
1 TTATCTC-CCTGAAGTTGCAGTGGAG-AAGACT-AAGAAT--CAAGTC
* * * * *
68871677 TTATCTCCCTGAGGTTGTAGTGGAGCAGATTAAAGCCGA-CAA-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACT-AAG--AATCAAGTC
* ** *
68871721 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AATCACAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAATCA-AG-TC
** * * * * * *
68871765 TTATCTCTTTGAAGTTGTAG-AGAGCAGA-TCA-CATCTAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAATCAAGTC
* * *
68871805 TTATCTCCCTGAAGTTGCAATGGAGCAGACTAAGCAAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAG-AATCAAGTC
* * *
68871849 TTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATAGCAAATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GAAGACT-AAGA-ATCAAGTC
* ** *
68871894 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGAT-AA-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACT-AAG--AATCAAGTC
* * ** * * **
68871938 CTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA-AACCCTGGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAA-TCAAG-TC
* * * * *
68871982 TTATCTCTCC-GGAGTTGCAG-AGAGCAGA-T-CGCATCAAGTC
1 TTATCTC-CCTGAAGTTGCAGTGGAGAAGACTAAGAATCAAGTC
* *
68872022 TTATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAG-ATGGCAAATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GAAGACT-AAGAAT--CAAGTC
* ** *
68872067 TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGCCGAT-AA-TC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACT-AAG--AATCAAGTC
* * * ** * * *
68872111 CTATCTTCCTGAAGTTACAGTGGAGTGGATTAA-AACCTTAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAATC-AAG-TC
* * * * * * *
68872155 TTATCTCTCTAAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAATCAAGTC
*
68872195 TTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAATCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAG-AATCAAGTC
*
68872239 TTATC-CTCCTAAAGTTGCAGT-GAGGAAGACTAA-AGATGGCGAA-TC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GAAGACTAAGA-AT--C-AAGTC
* * * * * * *
68872284 TTATCTCCCTGAAGTTGCAGTGGGGCATATTAAATAAACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACT-AAGAATCAAGTC
* * ** * *
68872328 CTGTCTCCCTGAAGTTGCAGTGGAGCGGATTAA-AACCACAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAATCA-AG-TC
* * * * * *
68872372 TTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCA-CATCGAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAATCAAGTC
* * *
68872413 TTATCTTCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGAAGACT-AAG-AATCAAGTC
* * *
68872458 TTATCCCCCTCAAATTGCAGTGG
1 TTATCTCCCTGAAGTTGCAGTGG
68872481 GGCATACTAA
Statistics
Matches: 809, Mismatches: 163, Indels: 183
0.70 0.14 0.16
Matches are distributed among these distances:
39 4 0.00
40 80 0.10
41 62 0.08
42 28 0.03
43 98 0.12
44 338 0.42
45 176 0.22
46 19 0.02
47 1 0.00
48 3 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGAAGACTAAGAATCAAGTC
Found at i:68872486 original size:174 final size:175
Alignment explanation
Indices: 68872193--68872525 Score: 449
Period size: 174 Copynumber: 1.9 Consensus size: 175
68872183 TCGCATCTAG
*
68872193 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAATCAAGTCTTATCCTCCTAAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAG-AATCAAGTCTTATCCTCCTAAAGTTGCA
** * * * *
68872258 GTGAGGAAGACTAAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGGGCATATTAAATAAAC
65 GTGAGGAAGACTAAAGAAAGCGAATCTTATCCCCCTCAAATTGCAGTGGGGCATACTAAATAAAC
*
68872323 AAATCCTGTCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGA
130 AAATCATGTCTCCCT-AAGTTGCAGTGGAGCGGATTAAAACCACAGA
* * * * * *
68872370 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGA-TCA-CATCGAGTCTTATCTTCCTGAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAGAATCAAGTCTTATCCTCCTAAAGTTGCAG
* *
68872433 TG-GAGCAGACTCAAGAAAGC-AAGTCTTATCCCCCTCAAATTGCAGTGGGGCATACTAAATAAA
66 TGAG-GAAGACTAAAGAAAGCGAA-TCTTATCCCCCTCAAATTGCAGTGGGGCATACTAAATAAA
*
68872496 CAAATCATGTCTCCCTAAGTTGTAGTGGAG
129 CAAATCATGTCTCCCTAAGTTGCAGTGGAG
68872526 TAGATTAGAG
Statistics
Matches: 137, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
173 16 0.12
174 90 0.66
176 2 0.01
177 29 0.21
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (175 bp):
TCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTAAGAATCAAGTCTTATCCTCCTAAAGTTGCAG
TGAGGAAGACTAAAGAAAGCGAATCTTATCCCCCTCAAATTGCAGTGGGGCATACTAAATAAACA
AATCATGTCTCCCTAAGTTGCAGTGGAGCGGATTAAAACCACAGA
Found at i:68872847 original size:17 final size:18
Alignment explanation
Indices: 68872833--68872895 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 18
68872823 ATAATCTTCG
68872833 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
68872851 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
* *
68872870 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
68872889 A-GATATG
1 AGGATATG
68872896 ATTTTGTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.14
18 1 0.02
19 35 0.83
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:68872859 original size:19 final size:19
Alignment explanation
Indices: 68872835--68872888 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
68872825 AATCTTCGAG
68872835 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
68872854 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
68872873 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
68872889 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:68872907 original size:23 final size:22
Alignment explanation
Indices: 68872848--68872911 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 22
68872838 ATGCAATCTT
*
68872848 AGATATGATATGCAATCTT---
1 AGATATGATATGTAATCTTAGA
68872867 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
68872889 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
68872912 TATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.46
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:68873111 original size:19 final size:21
Alignment explanation
Indices: 68873087--68873125 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
68873077 GGCTTACTGT
*
68873087 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
68873106 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
68873126 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:68879427 original size:16 final size:17
Alignment explanation
Indices: 68879406--68879448 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
68879396 CATATGTGTC
68879406 ATAATTCAATATATTTT
1 ATAATTCAATATATTTT
*
68879423 A-AATTCGAT-TATTTT
1 ATAATTCAATATATTTT
*
68879438 ATAAGTCAATA
1 ATAATTCAATA
68879449 CAACTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
15 7 0.33
16 13 0.62
17 1 0.05
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.47
Consensus pattern (17 bp):
ATAATTCAATATATTTT
Found at i:68890249 original size:126 final size:126
Alignment explanation
Indices: 68890014--68890282 Score: 425
Period size: 126 Copynumber: 2.1 Consensus size: 126
68890004 AGCCAAACAT
* * *
68890014 GAACTACTGTAGAAAAAGAGTGTCGACATGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCATCAATTTTGCTGACAATGCATC
* * *
68890079 CTGCTTGAAGCGTTTTTGACACTATTTGTTTAGAAACGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTCACACTATTTGTTAAGAAACGTATTCTCAAAATTATTTTTTCAG
*
68890140 GAACTATTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCAAT-AATTTTGCTGACAATGCAT
1 GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTC-ATCAATTTTGCTGACAATGCAT
*
68890204 CCTGCTTGAAGCGTTTTTCATACTATTTGTTAAG-AACAGTATTCTCAAAATTATTTTTTCAG
65 CCTGCTTGAAGCGTTTTTCACACTATTTGTTAAGAAAC-GTATTCTCAAAATTATTTTTTCAG
*
68890266 GAACTACTATAGAAAAA
1 GAACTACTGTAGAAAAA
68890283 AAAACAAAAT
Statistics
Matches: 131, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
125 3 0.02
126 126 0.96
127 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCCACATGGGAGCTTTTTTCATCAATTTTGCTGACAATGCATC
CTGCTTGAAGCGTTTTTCACACTATTTGTTAAGAAACGTATTCTCAAAATTATTTTTTCAG
Found at i:68890385 original size:34 final size:33
Alignment explanation
Indices: 68890344--68890419 Score: 118
Period size: 34 Copynumber: 2.3 Consensus size: 33
68890334 TACAATATTA
68890344 TTTTAAAAAAAC-TAAACCCTAATTTAATTAAT
1 TTTTAAAAAAACTTAAACCCTAATTTAATTAAT
* *
68890376 TTATTTAAAATACTTAAACCCTAATTTAATTAAT
1 TT-TTAAAAAAACTTAAACCCTAATTTAATTAAT
68890410 TTTTAAAAAA
1 TTTTAAAAAA
68890420 TAACACTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 2 0.05
33 14 0.37
34 22 0.58
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.41
Consensus pattern (33 bp):
TTTTAAAAAAACTTAAACCCTAATTTAATTAAT
Found at i:68895916 original size:17 final size:20
Alignment explanation
Indices: 68895883--68895926 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 20
68895873 GCACATCCTA
68895883 ATTAAAAACACTTT-AAATT
1 ATTAAAAACACTTTAAAATT
68895902 ATTAAAAA-A-TTTAAAATT
1 ATTAAAAACACTTTAAAATT
68895920 -TTAAAAA
1 ATTAAAAA
68895927 TTATATTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 10 0.42
18 6 0.25
19 8 0.33
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (20 bp):
ATTAAAAACACTTTAAAATT
Found at i:68897733 original size:16 final size:16
Alignment explanation
Indices: 68897700--68897733 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68897690 TCTAAGTGTT
* *
68897700 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
68897716 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
68897732 AA
1 AA
68897734 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:68900560 original size:21 final size:21
Alignment explanation
Indices: 68900534--68900574 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
68900524 AGACGAGCAA
* *
68900534 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
68900555 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
68900575 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:68902513 original size:16 final size:16
Alignment explanation
Indices: 68902480--68902513 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
68902470 GGAGATTGTT
* *
68902480 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
68902496 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
68902512 AA
1 AA
68902514 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:68913573 original size:76 final size:75
Alignment explanation
Indices: 68913449--68913600 Score: 277
Period size: 76 Copynumber: 2.0 Consensus size: 75
68913439 GTTTCTTTTT
* *
68913449 TTTTTTTTTTCCTTTTTTAACACTCACTGGCCGCCCTTTCTCCCTATACTCAGTTTGGAGTCCAG
1 TTTTTTTTTCCCTTTTTTAACACTCACTGGCCCCCCTTTCTCCCTATACTCAGTTTGGAGTCCAG
68913514 CATTTGAAAC
66 CATTTGAAAC
68913524 TTTTTTTTTCCCTTTTTTTAACACTCACTGGCCCCCCTTTCTCCCTATACTCAGTTTGGAGTCCA
1 TTTTTTTTTCCC-TTTTTTAACACTCACTGGCCCCCCTTTCTCCCTATACTCAGTTTGGAGTCCA
68913589 GCATTTGAAAC
65 GCATTTGAAAC
68913600 T
1 T
68913601 GAGGTTTTGC
Statistics
Matches: 74, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
75 11 0.15
76 63 0.85
ACGTcount: A:0.17, C:0.29, G:0.11, T:0.43
Consensus pattern (75 bp):
TTTTTTTTTCCCTTTTTTAACACTCACTGGCCCCCCTTTCTCCCTATACTCAGTTTGGAGTCCAG
CATTTGAAAC
Found at i:68918545 original size:7 final size:6
Alignment explanation
Indices: 68918521--68918550 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
68918511 CCAACGGTGA
68918521 TTTTAG TTTTAG TTTTAG TTTTTAG TTTTA
1 TTTTAG TTTTAG TTTTAG -TTTTAG TTTTA
68918551 ATCCACTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.17, C:0.00, G:0.13, T:0.70
Consensus pattern (6 bp):
TTTTAG
Found at i:68918545 original size:13 final size:12
Alignment explanation
Indices: 68918521--68918550 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
68918511 CCAACGGTGA
68918521 TTTTAGTTTTAG
1 TTTTAGTTTTAG
68918533 TTTTAGTTTTTAG
1 TTTTAG-TTTTAG
68918546 TTTTA
1 TTTTA
68918551 ATCCACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.17, C:0.00, G:0.13, T:0.70
Consensus pattern (12 bp):
TTTTAGTTTTAG
Found at i:68920323 original size:15 final size:15
Alignment explanation
Indices: 68920303--68920334 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
68920293 GTGTGGGATA
*
68920303 TAATTTAATTAATTT
1 TAATTTAATAAATTT
68920318 TAATTTAATAAATTT
1 TAATTTAATAAATTT
68920333 TA
1 TA
68920335 GAATATTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TAATTTAATAAATTT
Found at i:68920987 original size:3 final size:3
Alignment explanation
Indices: 68920966--68921000 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
68920956 GCTTCATAGG
* *
68920966 ATT ATT CTT ATT CTT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
68921001 AAAGTCAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:68923872 original size:25 final size:25
Alignment explanation
Indices: 68923844--68923897 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
68923834 CTCTTTTGAG
*
68923844 TTAATAAGTTCTCTTTGAGTTTT-TT
1 TTAAGAAGTTCTC-TTGAGTTTTCTT
* *
68923869 TTAAGAATTTGTCTTGAGTTTTCTT
1 TTAAGAAGTTCTCTTGAGTTTTCTT
68923894 TTAA
1 TTAA
68923898 AAGAGTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.22, C:0.07, G:0.13, T:0.57
Consensus pattern (25 bp):
TTAAGAAGTTCTCTTGAGTTTTCTT
Found at i:68930763 original size:15 final size:16
Alignment explanation
Indices: 68930738--68930770 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
68930728 TAAGTGGTAC
68930738 TTTCAATGCTTTCATT
1 TTTCAATGCTTTCATT
68930754 TTTC-ATGCTTTCATT
1 TTTCAATGCTTTCATT
68930769 TT
1 TT
68930771 AAGTGGTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.15, C:0.18, G:0.06, T:0.61
Consensus pattern (16 bp):
TTTCAATGCTTTCATT
Found at i:68932305 original size:28 final size:27
Alignment explanation
Indices: 68932261--68932332 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
68932251 TTGAAATTTT
* *
68932261 AGTTTGTTGGATTTTGATATATGTCTTG
1 AGTTTGTTGGATATTGAT-TATGTCTTA
* *
68932289 AGTTTGTTAGATATTGATTATGTTTTA
1 AGTTTGTTGGATATTGATTATGTCTTA
*
68932316 AGCTTGTTGGATATTGA
1 AGTTTGTTGGATATTGA
68932333 ATTTATTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.22, C:0.03, G:0.24, T:0.51
Consensus pattern (27 bp):
AGTTTGTTGGATATTGATTATGTCTTA
Found at i:68932348 original size:35 final size:36
Alignment explanation
Indices: 68932300--68932368 Score: 131
Period size: 35 Copynumber: 1.9 Consensus size: 36
68932290 GTTTGTTAGA
68932300 TATTGATTATGTTTTAAGCTTGTTGGATATTGAATT
1 TATTGATTATGTTTTAAGCTTGTTGGATATTGAATT
68932336 TATT-ATTATGTTTTAAGCTTGTTGGATATTGAA
1 TATTGATTATGTTTTAAGCTTGTTGGATATTGAA
68932369 ATGGTTGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 29 0.88
36 4 0.12
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (36 bp):
TATTGATTATGTTTTAAGCTTGTTGGATATTGAATT
Found at i:68933428 original size:71 final size:72
Alignment explanation
Indices: 68933309--68933451 Score: 261
Period size: 71 Copynumber: 2.0 Consensus size: 72
68933299 TTGATACATT
*
68933309 TATGTGGTGTAATATTATGCACTTGGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
1 TATGTGGTGTAATATTATGCACTTAGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
68933374 TTGGATA
66 TTGGATA
*
68933381 TATGTGGTGTAATATTATGCAC-TAGACAATGTTGTTACTATGTGGTGTACCATTAATTATGTAT
1 TATGTGGTGTAATATTATGCACTTAGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
68933445 TTGGATA
66 TTGGATA
68933452 ATATTATTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 47 0.68
72 22 0.32
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (72 bp):
TATGTGGTGTAATATTATGCACTTAGACAATGTTCTTACTATGTGGTGTACCATTAATTATGTAT
TTGGATA
Found at i:68933660 original size:14 final size:14
Alignment explanation
Indices: 68933641--68933668 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
68933631 ACAATTTATT
68933641 AATATATATTAATA
1 AATATATATTAATA
68933655 AATATATATTAATA
1 AATATATATTAATA
68933669 TATGTAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATATATATTAATA
Found at i:68933742 original size:32 final size:33
Alignment explanation
Indices: 68933701--68933785 Score: 93
Period size: 32 Copynumber: 2.6 Consensus size: 33
68933691 AACTTTTCCG
* * *
68933701 GAAAATATTTT-CAGGAAATCTGCCAAACAGCA
1 GAAAATATTTTACAGCAAATCTACCAAACACCA
* *
68933733 GAAAATATTTTACA-CAGATTTACCAAACACCA
1 GAAAATATTTTACAGCAAATCTACCAAACACCA
* *
68933765 GAAAATATTTTCCAGTAAATC
1 GAAAATATTTTACAGCAAATC
68933786 ATTTTACAGA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
32 37 0.88
33 5 0.12
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.26
Consensus pattern (33 bp):
GAAAATATTTTACAGCAAATCTACCAAACACCA
Found at i:68933803 original size:20 final size:20
Alignment explanation
Indices: 68933778--68933837 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
68933768 AATATTTTCC
* *
68933778 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTCCAGAAA
68933798 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTCCAGAAA
68933818 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTCCAGAAA
68933838 TCATTTTACG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (20 bp):
AGTAAAACATTTTCCAGAAA
Found at i:68933844 original size:14 final size:14
Alignment explanation
Indices: 68933821--68933860 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
68933811 CCAGAAAAGT
*
68933821 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
68933835 AAATCATTTTACGG
1 AAAACATTTTACAG
68933849 AAAACATTTTAC
1 AAAACATTTTAC
68933861 TGCCAAACAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:68937652 original size:15 final size:16
Alignment explanation
Indices: 68937623--68937656 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
68937613 AGGGATGGCA
68937623 TTTGTTTGATGTTTAT
1 TTTGTTTGATGTTTAT
*
68937639 TTTGTTT-ATTTTTAT
1 TTTGTTTGATGTTTAT
68937654 TTT
1 TTT
68937657 ATAATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (16 bp):
TTTGTTTGATGTTTAT
Found at i:68940133 original size:9 final size:9
Alignment explanation
Indices: 68940119--68940194 Score: 109
Period size: 9 Copynumber: 8.4 Consensus size: 9
68940109 TTTGGTTAAA
68940119 AATTAACCG
1 AATTAACCG
68940128 AATTAACCG
1 AATTAACCG
*
68940137 AATTAACTG
1 AATTAACCG
68940146 AATTAACCG
1 AATTAACCG
68940155 AATTAACCG
1 AATTAACCG
*
68940164 GATT-ACTCG
1 AATTAAC-CG
68940173 AATTAACCG
1 AATTAACCG
*
68940182 AATTAACTG
1 AATTAACCG
68940191 AATT
1 AATT
68940195 GAATCACTAC
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
8 2 0.03
9 56 0.93
10 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:68956904 original size:16 final size:17
Alignment explanation
Indices: 68956874--68956909 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
68956864 TTTAAAATAC
*
68956874 TTTAAAAATATATATTT
1 TTTAAAAATAAATATTT
68956891 TTTAAAAA-AAATATTT
1 TTTAAAAATAAATATTT
68956907 TTT
1 TTT
68956910 GTGTTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTAAAAATAAATATTT
Found at i:68957487 original size:9 final size:9
Alignment explanation
Indices: 68957473--68957512 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
68957463 GTAGTGATTC
*
68957473 AATTCGGTT
1 AATTCGGGT
68957482 AATTCGGGT
1 AATTCGGGT
68957491 AATTCGGGT
1 AATTCGGGT
*
68957500 AATTCGGTT
1 AATTCGGGT
68957509 AATT
1 AATT
68957513 TTTAACCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (9 bp):
AATTCGGGT
Found at i:68962571 original size:31 final size:30
Alignment explanation
Indices: 68962514--68962638 Score: 94
Period size: 31 Copynumber: 4.1 Consensus size: 30
68962504 ATTTAGCTAT
* **
68962514 ATATTAATAT-GATATATTAAATTTAATTTA
1 ATATTTATATAGATATATTTTA-TTAATTTA
*
68962544 ATATTTATTTAGATAGTATTTTATTAATTTA
1 ATATTTATATAGATA-TATTTTATTAATTTA
* * * *
68962575 ATATTCATAT-GAGACATTTAATTTAATTTA
1 ATATTTATATAGATATATTTTA-TTAATTTA
* *
68962605 AT-TTATATCTAGATAATATTTTATCAATTTA
1 ATATT-TATATAGAT-ATATTTTATTAATTTA
68962636 ATA
1 ATA
68962639 ATAATGTGAT
Statistics
Matches: 73, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
29 7 0.10
30 24 0.33
31 31 0.42
32 11 0.15
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (30 bp):
ATATTTATATAGATATATTTTATTAATTTA
Found at i:68962586 original size:61 final size:61
Alignment explanation
Indices: 68962514--68962643 Score: 172
Period size: 61 Copynumber: 2.1 Consensus size: 61
68962504 ATTTAGCTAT
* * * * *
68962514 ATATTAATATGATATATTAAATTTAATTTAATATT-TATTTAGATAGTATTTTATTAATTTA
1 ATATTAATATGAGACATTAAATTTAATTTAAT-TTATATCTAGATAATATTTTATCAATTTA
* *
68962575 ATATTCATATGAGACATTTAATTTAATTTAATTTATATCTAGATAATATTTTATCAATTTA
1 ATATTAATATGAGACATTAAATTTAATTTAATTTATATCTAGATAATATTTTATCAATTTA
*
68962636 ATAATAAT
1 ATATTAAT
68962644 GTGATTAATT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 2 0.03
61 57 0.97
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.51
Consensus pattern (61 bp):
ATATTAATATGAGACATTAAATTTAATTTAATTTATATCTAGATAATATTTTATCAATTTA
Found at i:68964660 original size:14 final size:14
Alignment explanation
Indices: 68964637--68964671 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
68964627 AACTAAAAGG
68964637 TTAATTATGTT-AA
1 TTAATTATGTTAAA
68964650 TTAAGTTATGTTAAA
1 TTAA-TTATGTTAAA
68964665 TTAATTA
1 TTAATTA
68964672 ATCTAGGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.20
14 10 0.50
15 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (14 bp):
TTAATTATGTTAAA
Found at i:68966359 original size:38 final size:37
Alignment explanation
Indices: 68966317--68966389 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
68966307 ATGTGTGGAA
* *
68966317 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
68966355 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
68966390 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:68976129 original size:15 final size:16
Alignment explanation
Indices: 68976099--68976131 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
68976089 ATAATGTTAG
68976099 AAATAAATCAAATTGA
1 AAATAAATCAAATTGA
*
68976115 AAATAAAT-AACTTGA
1 AAATAAATCAAATTGA
68976130 AA
1 AA
68976132 GAATAAGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.24
Consensus pattern (16 bp):
AAATAAATCAAATTGA
Found at i:68984543 original size:40 final size:40
Alignment explanation
Indices: 68984506--68984691 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
68984496 GCTACTCGTT
* *
68984506 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
68984546 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
68984586 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
68984626 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
68984667 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
68984692 CATCATTCAA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 2 0.02
40 116 0.89
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:68986982 original size:34 final size:34
Alignment explanation
Indices: 68986934--68987008 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
68986924 CCATTATGAT
*
68986934 GTATCTACTTAACCCTCAATACGTATGGCCAGAC
1 GTATATACTTAACCCTCAATACGTATGGCCAGAC
*
68986968 GTCTATACTTAACCCTCAATACGTATGGCCAGAC
1 GTATATACTTAACCCTCAATACGTATGGCCAGAC
68987002 GTATATA
1 GTATATA
68987009 ATCGTGTAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.28
Consensus pattern (34 bp):
GTATATACTTAACCCTCAATACGTATGGCCAGAC
Found at i:68997864 original size:20 final size:19
Alignment explanation
Indices: 68997839--68997877 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68997829 GGTGAAAAGA
*
68997839 TTAAAACATACTTGCAAAAT
1 TTAAAA-ATACATGCAAAAT
*
68997859 TTAAAAATTCATGCAAAAT
1 TTAAAAATACATGCAAAAT
68997878 ACTGCCTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.51, C:0.13, G:0.05, T:0.31
Consensus pattern (19 bp):
TTAAAAATACATGCAAAAT
Found at i:68999650 original size:17 final size:17
Alignment explanation
Indices: 68999628--68999665 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
68999618 TGTCTGTAAG
68999628 CTTGTGATAGAGATGGA
1 CTTGTGATAGAGATGGA
* *
68999645 CTTGTGGTAGTGATGGA
1 CTTGTGATAGAGATGGA
68999662 CTTG
1 CTTG
68999666 CGACGGCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.08, G:0.37, T:0.34
Consensus pattern (17 bp):
CTTGTGATAGAGATGGA
Found at i:69009430 original size:27 final size:27
Alignment explanation
Indices: 69009400--69009577 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 27
69009390 ATATTGAGTC
* * *
69009400 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
69009427 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
69009454 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
69009482 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
69009509 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
69009536 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
69009563 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
69009578 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:69009539 original size:82 final size:81
Alignment explanation
Indices: 69009426--69009576 Score: 205
Period size: 82 Copynumber: 1.9 Consensus size: 81
69009416 TATAATCATC
* * * *
69009426 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCA-AATCGCACACTT
69009491 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
69009508 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCACCCTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCACACTT
69009572 AGTGC
65 AGTGC
69009577 TGTACAATTT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
81 17 0.28
82 43 0.72
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:69013601 original size:23 final size:23
Alignment explanation
Indices: 69013564--69013610 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
69013554 TTTCAGTATC
* *
69013564 AAAATCAGTATGGTAACAATATT
1 AAAATCAATACGGTAACAATATT
69013587 AAAATCAATACGGTAACAATATT
1 AAAATCAATACGGTAACAATATT
69013610 A
1 A
69013611 GCATAAACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.11, G:0.11, T:0.28
Consensus pattern (23 bp):
AAAATCAATACGGTAACAATATT
Found at i:69020897 original size:6 final size:6
Alignment explanation
Indices: 69020886--69020923 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
69020876 ATTATTTTGC
*
69020886 AAAAAT AAAAAT AAAAAT AAAACA- ATAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAAAAT AA
69020924 TAAAATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 1 0.04
6 26 0.93
7 1 0.04
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:69021893 original size:14 final size:14
Alignment explanation
Indices: 69021874--69021900 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
69021864 ATTTAATTGA
69021874 AAAATTAATTAATT
1 AAAATTAATTAATT
69021888 AAAATTAATTAAT
1 AAAATTAATTAAT
69021901 AAATAATACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAATTAATTAATT
Found at i:69033606 original size:39 final size:37
Alignment explanation
Indices: 69033539--69033631 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
69033529 TCCAGTATGG
* *
69033539 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
69033578 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
69033615 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
69033632 AATCTATCCA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:69033999 original size:3 final size:3
Alignment explanation
Indices: 69033991--69034036 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
69033981 CCACTCATCT
*
69033991 TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
69034037 TACCTCACAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:69034792 original size:16 final size:17
Alignment explanation
Indices: 69034762--69034794 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
69034752 TTGTTTATTA
*
69034762 TTTAATAAATGTAATAT
1 TTTAATAAATATAATAT
69034779 TTTAAT-AATATAATAT
1 TTTAATAAATATAATAT
69034795 AATAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (17 bp):
TTTAATAAATATAATAT
Found at i:69036244 original size:37 final size:37
Alignment explanation
Indices: 69036194--69036272 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69036184 TTATTACGAA
* * *
69036194 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69036231 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69036268 GTCTT
1 GTCTT
69036273 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69036469 original size:47 final size:47
Alignment explanation
Indices: 69036391--69036738 Score: 624
Period size: 47 Copynumber: 7.4 Consensus size: 47
69036381 CCCTTCGGGA
* * * * * *
69036391 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69036438 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69036485 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69036532 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69036579 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69036626 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69036673 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69036720 CTTATCACATATATACACT
1 CTTATCACATATATACACT
69036739 GTCTTGGCTG
Statistics
Matches: 291, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 291 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69039521 original size:18 final size:18
Alignment explanation
Indices: 69039498--69039533 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
69039488 ATTTGTATTT
*
69039498 TTGCATTTATATTTCAAA
1 TTGCATTTATATTACAAA
69039516 TTGCATTTATATTACAAA
1 TTGCATTTATATTACAAA
69039534 GTTTGTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.11, G:0.06, T:0.47
Consensus pattern (18 bp):
TTGCATTTATATTACAAA
Found at i:69043960 original size:4 final size:4
Alignment explanation
Indices: 69043951--69043976 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
69043941 TATTTTAGAT
69043951 TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TA
69043977 TTAGTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:69044421 original size:17 final size:17
Alignment explanation
Indices: 69044399--69044433 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
69044389 AATGTAGGGT
69044399 TTTATTATATAAGGTTC
1 TTTATTATATAAGGTTC
69044416 TTTATTATATAAGGTTC
1 TTTATTATATAAGGTTC
69044433 T
1 T
69044434 ATGTTCTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.11, T:0.54
Consensus pattern (17 bp):
TTTATTATATAAGGTTC
Found at i:69045936 original size:51 final size:51
Alignment explanation
Indices: 69045855--69046121 Score: 430
Period size: 51 Copynumber: 5.3 Consensus size: 51
69045845 ACTTCTGATC
69045855 AGTGACAAGTGATAAGT-AGTAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGA-TAGCTTCAGCTACACTTATCTGATCAGTGACA
*
69045906 AGTGGCAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
69045957 AGTGACAAGTGATAAGTGTTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* * *
69046008 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACCTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
* *
69046059 AGTGGCAAGTGATAAGTGGTAGCTT-AGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
*
69046109 AGTGATAAGTGAT
1 AGTGACAAGTGAT
69046122 CATACGTAAG
Statistics
Matches: 205, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
50 35 0.17
51 169 0.82
52 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAGTGACA
Found at i:69046756 original size:28 final size:28
Alignment explanation
Indices: 69046714--69046805 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 28
69046704 AATGCATCTA
69046714 ATTTATATTACAAAGTTTGTAATTTTGC
1 ATTTATATTACAAAGTTTGTAATTTTGC
* * *
69046742 ATTTATATTATAAAGTTT-TTATTTTTC
1 ATTTATATTACAAAGTTTGTAATTTTGC
* *
69046769 ATTTATATTACCAAA-TATGTATTTTTGC
1 ATTTATATTA-CAAAGTTTGTAATTTTGC
69046797 ATTTATATT
1 ATTTATATT
69046806 TTTGCATGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
27 19 0.35
28 35 0.65
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.55
Consensus pattern (28 bp):
ATTTATATTACAAAGTTTGTAATTTTGC
Found at i:69046805 original size:14 final size:14
Alignment explanation
Indices: 69046788--69046818 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
69046778 ACCAAATATG
*
69046788 TATTTTTGCATTTA
1 TATTTTTGCATGTA
69046802 TATTTTTGCATGTA
1 TATTTTTGCATGTA
69046816 TAT
1 TAT
69046819 AAATCGATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.06, G:0.10, T:0.61
Consensus pattern (14 bp):
TATTTTTGCATGTA
Found at i:69049064 original size:42 final size:43
Alignment explanation
Indices: 69049004--69049084 Score: 121
Period size: 42 Copynumber: 1.9 Consensus size: 43
69048994 TTCCTTCATT
*
69049004 TTCTCCTTTTATCTTTTTTTTCCCTTCTCATTCTCTTCTTTCC
1 TTCTCCTTTTATCTTTTTTTCCCCTTCTCATTCTCTTCTTTCC
*
69049047 TTCT-CTTTTAT-TCTTTTTTCCCCTTCTTATTCTCTTCT
1 TTCTCCTTTTATCT-TTTTTTCCCCTTCTCATTCTCTTCT
69049085 CTTATCTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 1 0.03
42 30 0.86
43 4 0.11
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (43 bp):
TTCTCCTTTTATCTTTTTTTCCCCTTCTCATTCTCTTCTTTCC
Found at i:69049078 original size:19 final size:19
Alignment explanation
Indices: 69049018--69049079 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
69049008 CCTTTTATCT
* *
69049018 TTTTTTTCCCTTCTCATTC
1 TTTTTTCCCCTTCTTATTC
69049037 TCTTCTTTCCTTCTCTT-TTATTC
1 T-TT-TTTCC--C-CTTCTTATTC
69049060 TTTTTTCCCCTTCTTATTC
1 TTTTTTCCCCTTCTTATTC
69049079 T
1 T
69049080 CTTCTCTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
18 3 0.09
19 9 0.26
20 2 0.06
21 9 0.26
22 2 0.06
23 7 0.20
24 3 0.09
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTTCCCCTTCTTATTC
Found at i:69051568 original size:20 final size:20
Alignment explanation
Indices: 69051535--69051578 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
69051525 TAAAGAAAGT
* *
69051535 AAATGTAATGGAAAGTAATG
1 AAATGTAATGGAAAATAATA
69051555 AAATGTAAAT-GAAAATAATA
1 AAATGT-AATGGAAAATAATA
69051575 AAAT
1 AAAT
69051579 TTGAAAGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (20 bp):
AAATGTAATGGAAAATAATA
Found at i:69052045 original size:15 final size:16
Alignment explanation
Indices: 69052025--69052054 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69052015 TGGTGCCTTA
69052025 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
69052040 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
69052055 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:69054152 original size:18 final size:18
Alignment explanation
Indices: 69054126--69054161 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69054116 TTGTTCAATT
* *
69054126 GTATTTGAATTAAAAAAA
1 GTATATGAAGTAAAAAAA
69054144 GTATATGAAGTAAAAAAA
1 GTATATGAAGTAAAAAAA
69054162 ATTCGAGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.14, T:0.28
Consensus pattern (18 bp):
GTATATGAAGTAAAAAAA
Found at i:69054349 original size:18 final size:18
Alignment explanation
Indices: 69054326--69054363 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
69054316 ATTCGGGTAA
69054326 AACCGAAAAAATTCGGTT
1 AACCGAAAAAATTCGGTT
**
69054344 AACCGACCAAATTCGGTT
1 AACCGAAAAAATTCGGTT
69054362 AA
1 AA
69054364 TCGGTCGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (18 bp):
AACCGAAAAAATTCGGTT
Found at i:69054707 original size:9 final size:9
Alignment explanation
Indices: 69054691--69054769 Score: 122
Period size: 9 Copynumber: 8.8 Consensus size: 9
69054681 GGTATTTTTC
69054691 GGTAATTCG
1 GGTAATTCG
*
69054700 GTTAATTCG
1 GGTAATTCG
*
69054709 GTTAATTCG
1 GGTAATTCG
*
69054718 GTTAATTCG
1 GGTAATTCG
*
69054727 GTTAATTCG
1 GGTAATTCG
69054736 GGTAATTCG
1 GGTAATTCG
69054745 GGTAATTCG
1 GGTAATTCG
69054754 GGTAATTCG
1 GGTAATTCG
69054763 GGTAATT
1 GGTAATT
69054770 TTTAACCAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 68 1.00
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (9 bp):
GGTAATTCG
Found at i:69058877 original size:41 final size:41
Alignment explanation
Indices: 69058719--69058873 Score: 206
Period size: 41 Copynumber: 3.8 Consensus size: 41
69058709 TTAATTATTT
* *
69058719 CCTGAATTTCACATACATGCCCC--TTTGTACTTCGGTACC
1 CCTGAATTACACATACGTGCCCCTATTTGTACTTCGGTACC
* * *
69058758 CCTGAATTTCACATATGTTCCCCTATTTGTACTTCGGTACC
1 CCTGAATTACACATACGTGCCCCTATTTGTACTTCGGTACC
** * *
69058799 CCAAAATTACACATACGTGCCCCTGTTTGTACTTTGGTACC
1 CCTGAATTACACATACGTGCCCCTATTTGTACTTCGGTACC
*
69058840 CCTGAATTACACATACGTGCCCTTATTTGTACTT
1 CCTGAATTACACATACGTGCCCCTATTTGTACTT
69058874 TGGTTGTAAC
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 20 0.20
41 80 0.80
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (41 bp):
CCTGAATTACACATACGTGCCCCTATTTGTACTTCGGTACC
Found at i:69063923 original size:25 final size:26
Alignment explanation
Indices: 69063895--69063943 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
69063885 TTATTACTAA
69063895 AACTATAGAAAAACTA-TAGATTGTG
1 AACTATAGAAAAACTATTAGATTGTG
* **
69063920 AACTTTAGTTAAACTATTAGATTG
1 AACTATAGAAAAACTATTAGATTG
69063944 AAAACACTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (26 bp):
AACTATAGAAAAACTATTAGATTGTG
Found at i:69065933 original size:41 final size:41
Alignment explanation
Indices: 69065785--69065943 Score: 187
Period size: 41 Copynumber: 3.9 Consensus size: 41
69065775 TGAGTCCAGT
* * *
69065785 AGGCTTCATGCTGGTGTATTATATTAGGCTTTGTGCCTAGC
1 AGGCTTCATGCTAGTGTTTTATATCAGGCTTTGTGCCTAGC
* * * *
69065826 AGGCTTCTTGCCAATGTTTTATATCAAGCTTTGTGCCTAGC
1 AGGCTTCATGCTAGTGTTTTATATCAGGCTTTGTGCCTAGC
* *
69065867 AGGCTTCAT-ATCGATGTTTTATATCAGGCTTTGTGCCTAGC
1 AGGCTTCATGCTAG-TGTTTTATATCAGGCTTTGTGCCTAGC
* *
69065908 AGGCTTCGTGCTAGTGTATTT-TATCAGGCTTCGTGC
1 AGGCTTCATGCTAGTGT-TTTATATCAGGCTTTGTGC
69065944 AGGTGTATTA
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 93 0.95
42 5 0.05
ACGTcount: A:0.18, C:0.19, G:0.24, T:0.39
Consensus pattern (41 bp):
AGGCTTCATGCTAGTGTTTTATATCAGGCTTTGTGCCTAGC
Found at i:69065961 original size:25 final size:25
Alignment explanation
Indices: 69065907--69065968 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
69065897 TTGTGCCTAG
*
69065907 CAGGCTTCGTGCTAGTGTATTTTAT
1 CAGGCTTCGTGCTAGTGTATTATAT
69065932 CAGGCTTCGTGC-AGGTGTATTATA-
1 CAGGCTTCGTGCTA-GTGTATTATAT
*
69065956 CTAGGCTTTGTGC
1 C-AGGCTTCGTGC
69065969 CTAGCAGGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 2 0.06
25 31 0.94
ACGTcount: A:0.16, C:0.18, G:0.27, T:0.39
Consensus pattern (25 bp):
CAGGCTTCGTGCTAGTGTATTATAT
Found at i:69085007 original size:22 final size:22
Alignment explanation
Indices: 69084978--69085020 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
69084968 AACTGATGAG
69084978 GTTGTGCTAT-ATG-ATTGTTTC
1 GTTGTGCT-TGATGAATTGTTTC
69084999 GTTGATGCTTGATGAATTGTTT
1 GTTG-TGCTTGATGAATTGTTT
69085021 GCATGGTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
22 7 0.37
23 7 0.37
ACGTcount: A:0.16, C:0.07, G:0.26, T:0.51
Consensus pattern (22 bp):
GTTGTGCTTGATGAATTGTTTC
Found at i:69086820 original size:21 final size:21
Alignment explanation
Indices: 69086804--69086844 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
69086794 CTATGTCGTG
69086804 ACATGTCCCTACTATGTCACT
1 ACATGTCCCTACTATGTCACT
* *
69086825 ACATGTCCCTGCTATATCAC
1 ACATGTCCCTACTATGTCAC
69086845 GACACTAGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.34, G:0.10, T:0.32
Consensus pattern (21 bp):
ACATGTCCCTACTATGTCACT
Found at i:69090757 original size:26 final size:25
Alignment explanation
Indices: 69090728--69090828 Score: 112
Period size: 26 Copynumber: 3.9 Consensus size: 25
69090718 TTTCATCCCT
* *
69090728 ATTTTACCCCCAATAATATTTTGACA
1 ATTTTACCCCCAGTAA-ATTTTGACG
* *
69090754 ATTTTACCCTCGGTAAATTTTGACG
1 ATTTTACCCCCAGTAAATTTTGACG
*
69090779 ATTTTACCCCCAGTAAAATTTTGATG
1 ATTTTACCCCCAGT-AAATTTTGACG
**
69090805 ATTTTACCCCTGGTAAAATTTTGA
1 ATTTTACCCCCAGT-AAATTTTGA
69090829 GAAAATATGT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
25 20 0.31
26 45 0.69
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.40
Consensus pattern (25 bp):
ATTTTACCCCCAGTAAATTTTGACG
Found at i:69090784 original size:51 final size:52
Alignment explanation
Indices: 69090728--69090828 Score: 143
Period size: 51 Copynumber: 2.0 Consensus size: 52
69090718 TTTCATCCCT
*
69090728 ATTTTACCCCCAATAATATTTTGACAATTTTA-CCCTCGGT-AAATTTTGACG
1 ATTTTACCCCCAATAAAATTTTGACAATTTTACCCCT-GGTAAAATTTTGACG
* **
69090779 ATTTTACCCCCAGTAAAATTTTGATGATTTTACCCCTGGTAAAATTTTGA
1 ATTTTACCCCCAATAAAATTTTGACAATTTTACCCCTGGTAAAATTTTGA
69090829 GAAAATATGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
51 31 0.70
52 13 0.30
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.40
Consensus pattern (52 bp):
ATTTTACCCCCAATAAAATTTTGACAATTTTACCCCTGGTAAAATTTTGACG
Found at i:69094850 original size:53 final size:53
Alignment explanation
Indices: 69094773--69094879 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
69094763 GAAAATATGC
* *
69094773 ATGAGATTGATTGATTTTGCAATAATTTATTATATGATTTGAATCTTTTGAAT
1 ATGAGATTGATTAATTTTGCAATAATTTATTATATGATTTGAATCTTTTCAAT
*
69094826 ATGAGATTGATTAATTTTGCAATAATTTCTTATATGATTTGAATCTTTTCAAT
1 ATGAGATTGATTAATTTTGCAATAATTTATTATATGATTTGAATCTTTTCAAT
69094879 A
1 A
69094880 ATTTATTGTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.33, C:0.06, G:0.13, T:0.49
Consensus pattern (53 bp):
ATGAGATTGATTAATTTTGCAATAATTTATTATATGATTTGAATCTTTTCAAT
Found at i:69102988 original size:24 final size:24
Alignment explanation
Indices: 69102959--69103010 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
69102949 ATTCTCCTAA
69102959 TCAATCACTTGTATTTCTAAAAGC
1 TCAATCACTTGTATTTCTAAAAGC
*
69102983 TCAATCACTTGTATTTCTACAAGC
1 TCAATCACTTGTATTTCTAAAAGC
69103007 TCAA
1 TCAA
69103011 GCATATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.37
Consensus pattern (24 bp):
TCAATCACTTGTATTTCTAAAAGC
Found at i:69103406 original size:24 final size:26
Alignment explanation
Indices: 69103378--69103438 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 26
69103368 TAAAATCCAT
69103378 CTCATTTCCTTCC--TCTTCTCC-TTC
1 CTCATTTCCTTCCTTTCTTC-CCTTTC
*
69103402 CTCA--TCCTTACTTTCTTCCCTTTC
1 CTCATTTCCTTCCTTTCTTCCCTTTC
69103426 CTCATTTCCTTCC
1 CTCATTTCCTTCC
69103439 GGCTTGGGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
22 6 0.20
23 2 0.07
24 16 0.53
26 6 0.20
ACGTcount: A:0.07, C:0.44, G:0.00, T:0.49
Consensus pattern (26 bp):
CTCATTTCCTTCCTTTCTTCCCTTTC
Done.