Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 225 of 313
Found at i:69105153 original size:22 final size:22
Alignment explanation
Indices: 69105111--69105153 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
69105101 ATTGAATCTT
* *
69105111 GTTTCAGTGTTGCGACATGAAG
1 GTTTCAGTGTTACAACATGAAG
69105133 GTTTC-GTGTTACAACACTGAA
1 GTTTCAGTGTTACAACA-TGAA
69105154 TCTATTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (22 bp):
GTTTCAGTGTTACAACATGAAG
Found at i:69108515 original size:448 final size:448
Alignment explanation
Indices: 69107680--69108552 Score: 1656
Period size: 448 Copynumber: 1.9 Consensus size: 448
69107670 ATTGCTTGCA
*
69107680 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTAGAGATTATTCTCTCTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
69107745 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGGAACTAAAAAGCAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGGAACTAAAAAGCAAATAAAA
69107810 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
131 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
* *
69107875 CAAAAATTAAAATCAATTTAGTAGCGTTGTCTCCTCGGCAATGGCTCCAAACACTTGACCGCCTC
196 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
*
69107940 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGTTGTCTGC
261 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGCTGTCTGC
*
69108005 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
326 AAGTATACGAGTCAGGTTGTAAGATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
*
69108070 CCCAAGGGAGGCTAATACTAAATTAACTTGAACTTAAACGAATATATATCTAATTAGT
391 CCCAAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATATATCTAATTAGT
69108128 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
69108193 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGGAACTAAAAAGCAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGGAACTAAAAAGCAAATAAAA
69108258 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
131 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
69108323 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
196 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
*
69108388 CGGACATTCTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGCTGTCTGC
261 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGCTGTCTGC
* *
69108453 AAGTATACGAGTCAGGTTGTAAGATCGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCAAA
326 AAGTATACGAGTCAGGTTGTAAGATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
*
69108518 CCCAAGGAAGGCTAATACTAAATTAACTTTAACTT
391 CCCAAGGAAGGCTAATACTAAATTAACTTGAACTT
69108553 TAACTTAAAC
Statistics
Matches: 415, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
448 415 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (448 bp):
ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGGAACTAAAAAGCAAATAAAA
GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGCTGTCTGC
AAGTATACGAGTCAGGTTGTAAGATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
CCCAAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATATATCTAATTAGT
Found at i:69109784 original size:448 final size:448
Alignment explanation
Indices: 69108943--69109815 Score: 1584
Period size: 448 Copynumber: 1.9 Consensus size: 448
69108933 ATTGCTTGCA
*
69108943 ACAGGGGATTGGTTTTGCAACTGCTATTGCTATTGACAATTCCTACAGATTATTCTCTCAAGAAC
1 ACAGGGGATTGGTTTTGCAACTGCTATGGCTATTGACAATTCCTACAGATTATTCTCTCAAGAAC
* * *
69109008 AGTGACTCGCTTTATAATTATTCCACTACTACGAGTCCTACACTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTATTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
69109073 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
131 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
* *
69109138 CAAAAATTAAAATCAATTTAGTAGTGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
196 CAAAAATTAAAATCAATTCAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
* *
69109203 CGGACATTCTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGCTGTCTGC
261 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATCAATGGAATTGAGGTGCTGTCTGC
69109268 AAGTATACGAGTCAGGTTGTAAGATAGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCAAA
326 AAGTATACGAGTCAGGTTGTAAGATAGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCAAA
*
69109333 CCCAAGGGAGGCTAATACTAAATTAACTTGAACTTAAACGAATATATATCTAATTAGT
391 CCCAAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATATATCTAATTAGT
* * * * *
69109391 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
1 ACAGGGGATTGGTTTTGCAACTGCTATGGCTATTGACAATTCCTACAGATTATTCTCTCAAGAAC
*
69109456 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTATTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
69109521 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
131 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
69109586 CAAAAATTAAAATCAATTCAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
196 CAAAAATTAAAATCAATTCAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
*
69109651 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATCAATGGAATTGAGGTGGTGTCTGC
261 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATCAATGGAATTGAGGTGCTGTCTGC
*
69109716 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCAAA
326 AAGTATACGAGTCAGGTTGTAAGATAGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCAAA
*
69109781 CCCAAGGAAGGCTAATACTAAATTAACTTTAACTT
391 CCCAAGGAAGGCTAATACTAAATTAACTTGAACTT
69109816 TAACTTAAAC
Statistics
Matches: 407, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
448 407 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (448 bp):
ACAGGGGATTGGTTTTGCAACTGCTATGGCTATTGACAATTCCTACAGATTATTCTCTCAAGAAC
AGTGACTCGCTCTATAACTATTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
CAAAAATTAAAATCAATTCAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATCAATGGAATTGAGGTGCTGTCTGC
AAGTATACGAGTCAGGTTGTAAGATAGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCAAA
CCCAAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATATATCTAATTAGT
Found at i:69111045 original size:448 final size:448
Alignment explanation
Indices: 69110209--69112422 Score: 3991
Period size: 448 Copynumber: 4.9 Consensus size: 448
69110199 CTTGCAACAG
* *
69110209 GTGATTGGTTTTGCAACTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCCAGATCAGTG
1 GTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTG
* * * * *
69110274 ACTCGCTCTATAATTGTTCCACTACTACGTGTCCTACACTGAAACTAAAAAGAAAATAAAAGATG
66 ACTCGCTCTATAACTGTTCCACTACTGCGAGACATACACTGAAACTAAAAAGAAAATAAAAGATG
*
69110339 TTAGTAACAATAAAAAAAATTGTATCTACAATTTAAAAATTTCCAAATTATCCTATAAAACTCAA
131 TTAGTAACAAT-AAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAA
*
69110404 AAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCTCCAAACACTTGACCGCCTCCGG
195 AAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCGG
*
69110469 ACATACTAACATCCAGAGTGTAAATATTGCAACAAAATGAATGGAATTGAGGTGGTGTCTGCAAG
260 ACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAG
* * * *
69110534 TAGACGAGTCAGTTTGTAATATAGATTTTACAACGAAGTAGGTGAGCACTCCAAGGATCAAACCC
325 TATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACCC
69110599 AAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGTACAA
390 AAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGTACAA
69110658 GTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTG
1 GTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTG
* *
69110723 ACTCGCTCTATAACTGTTCCACTACTGCAAGACATACACTAAAACTAAAAAGAAAATAAAAGATG
66 ACTCGCTCTATAACTGTTCCACTACTGCGAGACATACACTGAAACTAAAAAGAAAATAAAAGATG
*
69110788 TTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAACTTATCCTATAAAACTCAAA
131 TTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAAA
*
69110853 AATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCTCCTCCGGA
196 AATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCGGA
**
69110918 CATACTAACATTTAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAGT
261 CATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAGT
69110983 ATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACCCA
326 ATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACCCA
*
69111048 AGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGTACAG
391 AGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGTACAA
69111106 GTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTG
1 GTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTG
*
69111171 ACTCGCTCTATAACTGTTCCACTACTGCAAGACATACACTGAAACTAAAAAGAAAATAAAAGATG
66 ACTCGCTCTATAACTGTTCCACTACTGCGAGACATACACTGAAACTAAAAAGAAAATAAAAGATG
69111236 TTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAAA
131 TTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAAA
69111301 AATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCGGA
196 AATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCGGA
69111366 CATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAGT
261 CATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAGT
*
69111431 ATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAATGATCAAACCCA
326 ATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACCCA
69111496 ATGG-AGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGTAC-A
391 A-GGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGTACAA
69111553 GATGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGT
1 G-TGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGT
* *
69111618 GACTCGCTCTATAACTGTTCCACTATTGCGAGCCATACACTGAAACTAAAAAGAAAATAAAAGAT
65 GACTCGCTCTATAACTGTTCCACTACTGCGAGACATACACTGAAACTAAAAAGAAAATAAAAGAT
69111683 GTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAA
130 GTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAA
* *
69111748 AAATTAAAATCAATTTAGTAGCGTTGCCTCCTCAGCAATGGCACCAAACATTTGACCGCCTCCGG
195 AAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCGG
*
69111813 ACATACTAAGATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAG
260 ACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAG
*
69111878 TATACGAGTCAGGTTCTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACCC
325 TATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACCC
* *
69111943 AAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATATATCTAATTAGTACAG
390 AAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGTACAA
*
69112002 GTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTTTAGATCAGTG
1 GTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTG
* *
69112067 ACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGAAACTAAAAAGAAAATAAAAGATG
66 ACTCGCTCTATAACTGTTCCACTACTGCGAGACATACACTGAAACTAAAAAGAAAATAAAAGATG
*
69112132 TTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTAAAA
131 TTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAAA
** * * *
69112197 AATTAAAATCAATTTAGTAGCGCGGCCTCCTCGGTAATGGCACCAAACACTTGACTGCCTACGGA
196 AATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCGGA
*
69112262 CATACTAACTTCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAGT
261 CATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAGT
* *
69112327 ATGCGAGTCAGGTTGTAATATAGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCAAACCCA
326 ATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACCCA
*
69112392 AGGAAGGCTAATACTAAATTAACTTTAACTT
391 AGGAAGGCTAATACTAAATTAACTTGAACTT
69112423 TAACTTAAAC
Statistics
Matches: 1706, Mismatches: 55, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
447 3 0.00
448 1568 0.92
449 135 0.08
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (448 bp):
GTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTG
ACTCGCTCTATAACTGTTCCACTACTGCGAGACATACACTGAAACTAAAAAGAAAATAAAAGATG
TTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAAA
AATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCGGA
CATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAGT
ATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACCCA
AGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGTACAA
Found at i:69113636 original size:450 final size:446
Alignment explanation
Indices: 69112799--69113670 Score: 1458
Period size: 450 Copynumber: 1.9 Consensus size: 446
69112789 TTGCAACAGA
*
69112799 TGATTGGTTTTGCATCTACTATGGCTATTGACGATTCCTAGAGATTATTCTCTCTAGATCAGTGA
1 TGATTGGTTTTGCATCTACTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTGA
* * * * * *
69112864 CTCGCTCTATAATTGTTCCACTACTACGAGCCCTACACTGAAACTAAAAAAAATAAAAGATGTTC
66 CTCGCTCTATAACTATTCCACTACTACAAGACATACACTGAAACTAAAAAAAATAAAAGATGTTA
**
69112929 GTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAAAAAT
131 GTAACAATAAAAAAATTCAATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAAAAAT
* * *
69112994 TAAAATCAATTCATTATCGTTGCCTCCTCGGCAATGGCTCCAATCACTTGACCGCCTCCGGACAT
196 TAAAATCAATTCAGTAGCGTTGCCTCCTCGGCAATGGCACCAATCACTTGACCGCCTCCGGACAT
*
69113059 ACTAACATCCAGAGTGTAAATATTGAAACTAAATGAATGGAATTGAGGTGGTGTCTGCAAGTAGA
261 ACTAACATCCAGAGTGTAAATATTGAAACTAAATCAATGGAATTGAGGTGGTGTCTGCAAGTAGA
*
69113124 CGAGTCAGGTTGTAATATAGTTTTTACAAAAAAGTAGGTCAGTACTCCAAGGATCAAACCCAAGG
326 CGAGTCAAGTTGTAATATAGTTTTTACAAAAAAGTAGGTCAGTACTCCAAGGATCAAACCCAAGG
* *
69113189 GAGGCTTATACTAAATTAACTTTAACTTTAACGAATATAGATCTAATTAGTACAAG
391 AAGGCTAATACTAAATTAACTTTAACTTTAACGAATATAGATCTAATTAGTACAAG
*
69113245 TGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTGA
1 TGATTGGTTTTGCATCTACTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTGA
*
69113310 CTCGCTCTATAACTATTCCACTACTCCAAGACATACACTGAAACTAAAAGGAAAATAAAAGATGT
66 CTCGCTCTATAACTATTCCACTACTACAAGACATACACTGAAACTAAAA--AAAATAAAAGATGT
69113375 TAGTAACAATAAAAAAAAATTCAATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAA
129 TAGTAACAAT--AAAAAAATTCAATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAA
*
69113440 AAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACC-ATACACTTGACCGCCTCCG
192 AAATTAAAATCAATTCAGTAGCGTTGCCTCCTCGGCAATGGCACCAAT-CACTTGACCGCCTCCG
* *
69113504 GACATACTAACATCCAGAGTTTAAATATTGCAACTAAATCAATGGAATTGAGGTGGTGTCTGCAA
256 GACATACTAACATCCAGAGTGTAAATATTGAAACTAAATCAATGGAATTGAGGTGGTGTCTGCAA
* ** *
69113569 GTATACGAGTCAAGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACC
321 GTAGACGAGTCAAGTTGTAATATAGTTTTTACAAAAAAGTAGGTCAGTACTCCAAGGATCAAACC
*
69113634 CAAGGAAGGCTAATACTAAGTTAACTTTAACTTTAAC
386 CAAGGAAGGCTAATACTAAATTAACTTTAACTTTAAC
69113671 TTAAACGAAT
Statistics
Matches: 395, Mismatches: 26, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
446 106 0.27
448 23 0.06
449 2 0.01
450 264 0.67
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (446 bp):
TGATTGGTTTTGCATCTACTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATCAGTGA
CTCGCTCTATAACTATTCCACTACTACAAGACATACACTGAAACTAAAAAAAATAAAAGATGTTA
GTAACAATAAAAAAATTCAATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCAAAAAT
TAAAATCAATTCAGTAGCGTTGCCTCCTCGGCAATGGCACCAATCACTTGACCGCCTCCGGACAT
ACTAACATCCAGAGTGTAAATATTGAAACTAAATCAATGGAATTGAGGTGGTGTCTGCAAGTAGA
CGAGTCAAGTTGTAATATAGTTTTTACAAAAAAGTAGGTCAGTACTCCAAGGATCAAACCCAAGG
AAGGCTAATACTAAATTAACTTTAACTTTAACGAATATAGATCTAATTAGTACAAG
Found at i:69115300 original size:447 final size:446
Alignment explanation
Indices: 69114057--69115367 Score: 2239
Period size: 447 Copynumber: 2.9 Consensus size: 446
69114047 ATTGCTTGCA
69114057 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
*
69114122 AGTGACTCGCTCTATAATTGTTCCACTACTACGAGTCC-TACACTGAAACTAAAAAGAAAATAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAG-CCATACACTGAAACTAAAAAGAAAATAAA
* *
69114186 AGATGTTAGTAAAAAAAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAAC
130 AGATGTTAGT-AACAATAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAAC
*
69114251 TCAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCTCCAAACACTTGACCGCCT
194 TCAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCT
69114316 CCGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTG
259 CCGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTG
* * *
69114381 CAAGTAGATGAGTCAGGTTGTAATATAGTTTTTACAATGAAGTAGGTGAG---T------ATCAA
324 CAAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAA
*
69114437 ACCCAAGGGAGGCTAATACAAAATTAACTTTAACTTAAACGAATATAGATCTAATTAGT
389 ACCCAA-GGAGGCTAATACTAAATTAACTTTAACTTAAACGAATATAGATCTAATTAGT
* *
69114496 ACAAGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCCCTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
* * * *
69114561 AGTGACTCGCTCTATAACTGTTCCACTACTGCAAGACATACGCTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGAAACTAAAAAGAAAATAAAA
69114626 GATGTTAGTAACAATAAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAAC
131 GATGTTAGTAACAAT--AAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAAC
* *
69114691 TCAAAAATTAAAATCAATTTATTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCTCCT
194 TCAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCT
**
69114756 CCGGACATACTAACATTTAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTG
259 CCGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTG
*
69114821 CAAGTATACGAGTCAAGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAA
324 CAAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAA
* * *
69114886 ACCCAATGGAGTCTAATACTAAATTAACTTGAACTTCAACGAATATAGATCTAATTAGT
389 ACCCAA-GGAGGCTAATACTAAATTAACTTTAACTTAAACGAATATAGATCTAATTAGT
*
69114945 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTTTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
69115010 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGAAACTAAAAAGAAAATAAAA
69115075 GATGTTAGTAACAATAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTC
131 GATGTTAGTAACAATAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTC
*
69115140 AAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCAACAAACACTTGACCGCCTCC
196 AAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCC
* *
69115205 AGACATATTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCA
261 GGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCA
69115270 AGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGAT-AAAC
326 AGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAAC
*
69115334 CCAAGGAAGGCTAATACTAAATTAATTTTAACTT
391 CCAAGG-AGGCTAATACTAAATTAACTTTAACTT
69115368 TAACTTAAAC
Statistics
Matches: 818, Mismatches: 41, Indels: 19
0.93 0.05 0.02
Matches are distributed among these distances:
438 5 0.01
439 130 0.16
440 219 0.27
443 1 0.00
445 2 0.00
446 32 0.04
447 232 0.28
449 197 0.24
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (446 bp):
ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
AGTGACTCGCTCTATAACTGTTCCACTACTACGAGCCATACACTGAAACTAAAAAGAAAATAAAA
GATGTTAGTAACAATAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTC
AAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCC
GGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCA
AGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAAC
CCAAGGAGGCTAATACTAAATTAACTTTAACTTAAACGAATATAGATCTAATTAGT
Found at i:69116599 original size:448 final size:446
Alignment explanation
Indices: 69115758--69116628 Score: 1580
Period size: 448 Copynumber: 1.9 Consensus size: 446
69115748 ATTGCTTGCA
69115758 ACAGATGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAAATTATTCTCTCTAGATC
1 ACAGATGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAAATTATTCTCTCTAGATC
* * * *
69115823 AGTGACTCGCTCTTTAATTGTTCCAATACTACGAGTCATACATTGAAACTAAAAAAAAATAAAAT
66 AGTGACTCGCTCTATAACTGTTCCAATACTACGAGTCATACACTGAAACTAAAAAAAAATAAAAG
*
69115888 ATGTTAGTAACTATAAAAAACTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCA
131 ATGTTAGTAACAATAAAAAACTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCA
* *
69115953 AAAATTAAAATCAATTTAGTAGCGTTGTCTCCTCGGCAATGGCTCCAAACACTTGACCGCCTCCG
196 AAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCG
* *
69116018 GACATACTAACATCCATAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTTCAA
261 GACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAA
*
69116083 GTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCATACC
326 GTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACC
*
69116148 CAAGGGAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGT
391 CAAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGT
* *
69116204 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
1 ACAGATGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAAATTATTCTCTCTAGATC
*
69116269 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCAATACTACGAGTCATACACTGAAACTAAAAA-AAAATAAAA
*
69116334 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
130 GATGTTAGTAACAAT-AAAAAACTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
69116399 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
194 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
69116464 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
259 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
69116529 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
324 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
*
69116594 CCCAAGGAAGGCTAATACTAAATTAACTTTAACTT
389 CCCAAGGAAGGCTAATACTAAATTAACTTGAACTT
69116629 TAACTTAAAC
Statistics
Matches: 407, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
446 114 0.28
447 22 0.05
448 271 0.67
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (446 bp):
ACAGATGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAAATTATTCTCTCTAGATC
AGTGACTCGCTCTATAACTGTTCCAATACTACGAGTCATACACTGAAACTAAAAAAAAATAAAAG
ATGTTAGTAACAATAAAAAACTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACTCA
AAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTCCG
GACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGCAA
GTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAACC
CAAGGAAGGCTAATACTAAATTAACTTGAACTTAAACGAATATAGATCTAATTAGT
Found at i:69118111 original size:815 final size:813
Alignment explanation
Indices: 69116204--69119063 Score: 5261
Period size: 815 Copynumber: 3.5 Consensus size: 813
69116194 TCTAATTAGT
69116204 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
69116269 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
69116334 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
131 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
69116399 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
196 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
69116464 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
261 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
69116529 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
326 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
69116594 CCCAAGGAAGGCTAATACTAAATTAACTTTAACTTTAACTTAAACGAATATCGATCAAGGATAAG
391 CCCAAGGAAGGCTAATACTAAATTAACTTTAACTTTAACTTAAACGAATATCGATCAAGGATAAG
*
69116659 GGAAACAACCGAATATGAATAGCTTCATCAATGACCCCGTTATATTTAAATGTATCACAAAATTG
456 GGAAACAACCGAAGATGAATAGCTTCATCAATGACCCCGTTATATTTAAATGTATCACAAAATTG
* *
69116724 AA-G--G---T-GATGTTGATTTGTGTCATCCGTCATGGTTCCTCTGAATTGCAGATTATTTTGG
521 AAGGACGTTTTAGATGTTGATTTGGGTCATCCGTCATGGTGCCTCTGAATTGCAGATTATTTTGG
69116782 ATCATCTAGATCATGGTCGATTTTATTTCAAAATTATTTTCCATAATGGTTGGCCTTGTAATGCT
586 ATCATCTAGATCATGGTCGATTTTATTTCAAAATTATTTTCCATAATGGTTGGCCTTGTAATGCT
*
69116847 ACCTTGAACCATCACCAGATTTGGTAGTGCGTAATCCTTTAGGTTTCGCTCTTCTCATGCCATCG
651 ACCTTGAACCATCACCAGATTTGGTAGTGCGTAATCCCTTAGGTTTCGCTCTTCTCATGCCATCG
69116912 AA-GGTTTGCTGGTAATTGCGGTGGTGGTGGTAAGTCTTGGATGTTAAGTTCGTTTACCTCATCA
716 AAGGGTTTGCTGGTAATTGCGGTGGTGGTGGTAAGTCTTGGATGTTAAGTTCGTTTACCTCATCA
69116976 AACAACGGGTTATCGCATGGTAGATTGCTTGCA
781 AACAACGGGTTATCGCATGGTAGATTGCTTGCA
*
69117009 ACAGGTGATTGGTTTTGAATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
*
69117074 AGTGACTCGCTCTATAACTGGTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
* *
69117139 GGTGTTAGTAACATTAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
131 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
69117204 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
196 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
69117269 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
261 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
69117334 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
326 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
69117399 CCCAAGGAAGGCTAATACTAAATTAACTTTAACTTTAACTTAAACGAATATCGATCAAGGATAAG
391 CCCAAGGAAGGCTAATACTAAATTAACTTTAACTTTAACTTAAACGAATATCGATCAAGGATAAG
* *
69117464 GGAAACAACCGAAGATGAATAGCTTCATTAATGACCCCGTTATATTTAAATGCATCACAAAATTG
456 GGAAACAACCGAAGATGAATAGCTTCATCAATGACCCCGTTATATTTAAATGTATCACAAAATTG
69117529 AAGGACCCGTTTTAGATGTTGATTTGGGTCATCCGTCATGGTGCCTCTGAATTGCAGATTATTTT
521 AAGGA--CGTTTTAGATGTTGATTTGGGTCATCCGTCATGGTGCCTCTGAATTGCAGATTATTTT
*
69117594 GGATCATCTAGATCACGGTCGATTTTATTTCAAAATTATTTTCCATAATGGTTGGCCTTGTAATG
584 GGATCATCTAGATCATGGTCGATTTTATTTCAAAATTATTTTCCATAATGGTTGGCCTTGTAATG
*
69117659 CTACCTTGAACCATCACCAGATTTGGTAGTGCATAATCCCTTAGGTTTCGCTCTTCTCATGCCAT
649 CTACCTTGAACCATCACCAGATTTGGTAGTGCGTAATCCCTTAGGTTTCGCTCTTCTCATGCCAT
* *
69117724 CGAAGGGTTTGCTGGTAATAGCGGTGGTGGTGCTAAGTCTTGGATGTTAAGTTCGTTTACCTCAT
714 CGAAGGGTTTGCTGGTAATTGCGGTGGTGGTGGTAAGTCTTGGATGTTAAGTTCGTTTACCTCAT
69117789 CAAACAACGGGTTATCGCATGGTAGATTGCTTGCA
779 CAAACAACGGGTTATCGCATGGTAGATTGCTTGCA
69117824 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
69117889 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
69117954 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
131 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
69118019 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
196 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
*
69118084 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATCAATGGAATTGAGGTGGTGTCTGC
261 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
*
69118149 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCAAA
326 AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
* *
69118214 CCCAAGGGAGGCTAATACTAAATTAACTTTAACTTTAACTTAAATGAATATCGATCAAGGATAAG
391 CCCAAGGAAGGCTAATACTAAATTAACTTTAACTTTAACTTAAACGAATATCGATCAAGGATAAG
69118279 GGAAACAACCGAAGATGAATAGCTTCATCAATGACCCCGTTATATTTAAATGTATCACAAAATTG
456 GGAAACAACCGAAGATGAATAGCTTCATCAATGACCCCGTTATATTTAAATGTATCACAAAATTG
* *
69118344 AAGGAGTCGTTTTAGATGCTGATTTGGGTCATCCGTCATGGTGCCTCTGAATTGTAGATTATTTT
521 AAGGA--CGTTTTAGATGTTGATTTGGGTCATCCGTCATGGTGCCTCTGAATTGCAGATTATTTT
* * *
69118409 GGATCATTTAGATCTTGGTCGATTTTATTTCAAAATTATTTTTCATAATGGTTGGCCTTGTAATG
584 GGATCATCTAGATCATGGTCGATTTTATTTCAAAATTATTTTCCATAATGGTTGGCCTTGTAATG
* *
69118474 CTACCTTGAACCATAACCAGATTTGGTAGTGCGTAATCCCTTAGGTTTCGCTATTCTCATGCCAT
649 CTACCTTGAACCATCACCAGATTTGGTAGTGCGTAATCCCTTAGGTTTCGCTCTTCTCATGCCAT
*
69118539 CGAAGGGTTTGCTGGTAATTGCGGTGGTGGTGGTAAGTCTTGGATGTTAAGTTCGTTTGCCTCAT
714 CGAAGGGTTTGCTGGTAATTGCGGTGGTGGTGGTAAGTCTTGGATGTTAAGTTCGTTTACCTCAT
* *
69118604 CAAACAACGAGTTATCGCTTGGTAGATTGCTTGCA
779 CAAACAACGGGTTATCGCATGGTAGATTGCTTGCA
* *
69118639 ACAGGTGATTGGTTTTGCATCTACTATGGCTATTGACGATTCCTACAGGTTATTCTCTCTAGATC
1 ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
* *
69118704 AGTGACTCGCTCTATAATTGTTCCACTACTACGAGTCATACATTGAAACTAAAAAGAAAATAAAA
66 AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
69118769 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
131 GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
* *
69118834 CAAAAATTAAAATCAATTTAGTGGCGTTGCCTCCTCGGCAATGGCACCAAACATTTGACCGCCTC
196 CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
* *
69118899 CGGACATACTAACATCAAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGTTGTCTGC
261 CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
* *
69118964 AAGTATACGAGTCAGGTTAG-AATATAGTTTTTACAATGAAGTAGGTGAGTACTCCAAGGATCGA
326 AAGTATACGAGTCAGGTT-GTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAA
*
69119028 ACCCAAGGGAGGCTAATACTAAATTAACTTTAACTT
390 ACCCAAGGAAGGCTAATACTAAATTAACTTTAACTT
69119064 AAATGAATAT
Statistics
Matches: 1994, Mismatches: 50, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
805 515 0.26
806 1 0.00
810 1 0.00
813 1 0.00
814 180 0.09
815 1295 0.65
816 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (813 bp):
ACAGGTGATTGGTTTTGCATCTGCTATGGCTATTGACGATTCCTACAGATTATTCTCTCTAGATC
AGTGACTCGCTCTATAACTGTTCCACTACTACGAGTCATACACTGAAACTAAAAAGAAAATAAAA
GATGTTAGTAACAATAAAAAAATTGTATCTACAATTTATAAATTTCCAAATTATCCTATAAAACT
CAAAAATTAAAATCAATTTAGTAGCGTTGCCTCCTCGGCAATGGCACCAAACACTTGACCGCCTC
CGGACATACTAACATCCAGAGTGTAAATATTGCAACTAAATGAATGGAATTGAGGTGGTGTCTGC
AAGTATACGAGTCAGGTTGTAATATAGTTTTTACAACGAAGTAGGTGAGTACTCCAAGGATCAAA
CCCAAGGAAGGCTAATACTAAATTAACTTTAACTTTAACTTAAACGAATATCGATCAAGGATAAG
GGAAACAACCGAAGATGAATAGCTTCATCAATGACCCCGTTATATTTAAATGTATCACAAAATTG
AAGGACGTTTTAGATGTTGATTTGGGTCATCCGTCATGGTGCCTCTGAATTGCAGATTATTTTGG
ATCATCTAGATCATGGTCGATTTTATTTCAAAATTATTTTCCATAATGGTTGGCCTTGTAATGCT
ACCTTGAACCATCACCAGATTTGGTAGTGCGTAATCCCTTAGGTTTCGCTCTTCTCATGCCATCG
AAGGGTTTGCTGGTAATTGCGGTGGTGGTGGTAAGTCTTGGATGTTAAGTTCGTTTACCTCATCA
AACAACGGGTTATCGCATGGTAGATTGCTTGCA
Found at i:69121147 original size:27 final size:27
Alignment explanation
Indices: 69121087--69121250 Score: 131
Period size: 27 Copynumber: 6.1 Consensus size: 27
69121077 GTTAGAACTG
*
69121087 TCTAATGTAGAAAGTCC-TC-AGTACTA
1 TCTAATGTGGAAAGTCCATCAAG-ACTA
69121113 TCTAATGTGGAAAGTCCATCAAGACTA
1 TCTAATGTGGAAAGTCCATCAAGACTA
* * * *
69121140 TCTTATGTGGGAAGTTCATCAGGACTA
1 TCTAATGTGGAAAGTCCATCAAGACTA
* * * * *
69121167 CCTAACGTGGAAAGTCCATTAGGATTA
1 TCTAATGTGGAAAGTCCATCAAGACTA
* *
69121194 TC-ATATGTGGAAAG-CCTGTAAAGACTA
1 TCTA-ATGTGGAAAGTCC-ATCAAGACTA
* *
69121221 TCTAATGTGGGAGGTCCAT-AAGGACTA
1 TCTAATGTGGAAAGTCCATCAA-GACTA
69121248 TCT
1 TCT
69121251 TTTAGAGGTC
Statistics
Matches: 110, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
26 21 0.19
27 84 0.76
28 5 0.05
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (27 bp):
TCTAATGTGGAAAGTCCATCAAGACTA
Found at i:69125254 original size:24 final size:25
Alignment explanation
Indices: 69125200--69125257 Score: 75
Period size: 24 Copynumber: 2.3 Consensus size: 25
69125190 GTGGTCGGTT
69125200 GTTAAATGTTTTATTTGAATTTTATA
1 GTTAAAT-TTTTATTTGAATTTTATA
*
69125226 ATTAAATTTTTATTT-AATTTTA-A
1 GTTAAATTTTTATTTGAATTTTATA
69125249 GGTTAAATT
1 -GTTAAATT
69125258 AATATTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 1 0.03
24 14 0.48
25 8 0.28
26 6 0.21
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (25 bp):
GTTAAATTTTTATTTGAATTTTATA
Found at i:69127479 original size:22 final size:22
Alignment explanation
Indices: 69127452--69127496 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
69127442 CTTTGTATAG
69127452 TGATATGGTTTGAAATCTATGT
1 TGATATGGTTTGAAATCTATGT
69127474 TGATATGGTTTGAAATCTATGT
1 TGATATGGTTTGAAATCTATGT
69127496 T
1 T
69127497 AACATGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.47
Consensus pattern (22 bp):
TGATATGGTTTGAAATCTATGT
Found at i:69128353 original size:40 final size:39
Alignment explanation
Indices: 69128296--69128455 Score: 173
Period size: 40 Copynumber: 4.1 Consensus size: 39
69128286 GTTTGAATAG
* * *
69128296 AAAACGCCGCTATAGATCAAACATTAACGACTTTTTTTGA
1 AAAACGCCGCTACAGATCGAGCATTAACGAC-TTTTTTGA
* *
69128336 AAAACGCCACTACAGATCGAGCATTAGCGGCAC-TTTTTGA
1 AAAACGCCGCTACAGATCGAGCATTAAC-G-ACTTTTTTGA
* * **
69128376 AAAACGCCGCTACAGATCGAGCATTAGCGGCGACTTTTGA
1 AAAACGCCGCTACAGATCGAGCATTAACGAC-TTTTTTGA
*
69128416 AAAACGCCGCTATAGATCGAGCATTAA-GA-TTTTTTGA
1 AAAACGCCGCTACAGATCGAGCATTAACGACTTTTTTGA
69128453 AAA
1 AAA
69128456 GCACCGTCAA
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
37 9 0.09
38 1 0.01
39 2 0.02
40 88 0.85
41 1 0.01
42 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (39 bp):
AAAACGCCGCTACAGATCGAGCATTAACGACTTTTTTGA
Found at i:69128918 original size:14 final size:14
Alignment explanation
Indices: 69128896--69129062 Score: 88
Period size: 14 Copynumber: 11.7 Consensus size: 14
69128886 TTAATTAGCA
*
69128896 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
69128910 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
69128924 ATATGGTTTAAGGT
1 TTATGGTTTAGGGT
* *
69128938 TTAAGGTTTAAGAGT
1 TTATGGTTT-AGGGT
*
69128953 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
*
69128967 TTATGGATTATGGGT
1 TTATGGTTTA-GGGT
* * **
69128982 TTAGGGATTATTGT
1 TTATGGTTTAGGGT
69128996 TTATGGTTTAAGGGT
1 TTATGGTTT-AGGGT
* *
69129011 TGA-GGTTTAAGGT
1 TTATGGTTTAGGGT
* *
69129024 TTAAGGGTTTAGGAT
1 TT-ATGGTTTAGGGT
* * *
69129039 TTATGTTTTATGAT
1 TTATGGTTTAGGGT
*
69129053 TTAGGGTTTA
1 TTATGGTTTA
69129063 AGGGATAGAG
Statistics
Matches: 115, Mismatches: 29, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
12 3 0.03
13 5 0.04
14 71 0.62
15 34 0.30
17 2 0.02
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:69128933 original size:21 final size:21
Alignment explanation
Indices: 69128901--69129062 Score: 98
Period size: 21 Copynumber: 7.6 Consensus size: 21
69128891 TAGCATTATA
*
69128901 GTTTAGGGTTTATGGTTTAGG
1 GTTTATGGTTTATGGTTTAGG
* * *
69128922 GTATATGGTTTAAGGTTTAAG
1 GTTTATGGTTTATGGTTTAGG
* *
69128943 GTTTAAGAGTTACTAT--TTTAAG
1 GTTTATG-GTT--TATGGTTTAGG
*
69128965 GTTTATGGATTATGGGTTTAGG
1 GTTTATGGTTTAT-GGTTTAGG
* *
69128987 GATTATTGTTTATGGTTTAAGG
1 GTTTATGGTTTATGGTTT-AGG
* *
69129009 GTTGA-GGTTTAAGGTTTAAGG
1 GTTTATGGTTTATGGTTT-AGG
* *
69129030 GTTTA-GGATTTATGTTTTATG
1 GTTTATGG-TTTATGGTTTAGG
* *
69129051 ATTTAGGGTTTA
1 GTTTATGGTTTA
69129063 AGGGATAGAG
Statistics
Matches: 110, Mismatches: 22, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
19 3 0.03
21 59 0.54
22 46 0.42
24 2 0.02
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.47
Consensus pattern (21 bp):
GTTTATGGTTTATGGTTTAGG
Found at i:69128982 original size:15 final size:15
Alignment explanation
Indices: 69128964--69129011 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
69128954 ACTATTTTAA
69128964 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
69128979 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* * *
69128993 TGTTTATGGTTTAAG
1 GGTTTATGGATTATG
69129008 GGTT
1 GGTT
69129012 GAGGTTTAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 10 0.38
15 16 0.62
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:69128984 original size:22 final size:21
Alignment explanation
Indices: 69128959--69129008 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
69128949 GAGTTACTAT
*
69128959 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* * *
69128981 TTTAGGGATTATTGTTTATGG
1 TTTAAGGATTATGGATTATGG
69129002 TTTAAGG
1 TTTAAGG
69129009 GTTGAGGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:69129049 original size:79 final size:78
Alignment explanation
Indices: 69128901--69129068 Score: 178
Period size: 79 Copynumber: 2.1 Consensus size: 78
69128891 TAGCATTATA
* * * *
69128901 GTTTAGGGTTTATGGTTTAGGGTATATGGTTTAAGGTTTAAGGTTTAAGAGTTACTATTTTAAGG
1 GTTTAGGGATTATGGTTTAGGGTATAAGGGTTAAGGTTTAAGGTTTAAGAGTTACGATTTTAAGG
69128966 TTTATGGA-TTATGG
66 TTTAT-GATTTA-GG
* * * * * * *
69128980 GTTTAGGGATTATTGTTTATGGTTTAAGGGTTGAGGTTTAAGGTTTAAGGGTTTAGGA-TTTATG
1 GTTTAGGGATTATGGTTTAGGGTATAAGGGTTAAGGTTTAAGGTTTAAGAG-TTACGATTTTAAG
*
69129044 TTTTATGATTTAGG
65 GTTTATGATTTAGG
69129058 GTTTAAGGGAT
1 GTTT-AGGGAT
69129069 AGAGGTTAAG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 8 0.11
79 62 0.84
80 4 0.05
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (78 bp):
GTTTAGGGATTATGGTTTAGGGTATAAGGGTTAAGGTTTAAGGTTTAAGAGTTACGATTTTAAGG
TTTATGATTTAGG
Found at i:69129089 original size:7 final size:7
Alignment explanation
Indices: 69128901--69129091 Score: 75
Period size: 7 Copynumber: 26.7 Consensus size: 7
69128891 TAGCATTATA
*
69128901 GTTTAGG
1 GTTTAAG
*
69128908 GTTTATG
1 GTTTAAG
*
69128915 GTTTAGG
1 GTTTAAG
* *
69128922 GTATATG
1 GTTTAAG
69128929 GTTTAAG
1 GTTTAAG
69128936 GTTTAAG
1 GTTTAAG
69128943 GTTTAAG
1 GTTTAAG
69128950 AG-TTACTA-
1 -GTTTA--AG
*
69128958 TTTTAAG
1 GTTTAAG
*
69128965 GTTTATG
1 GTTTAAG
* *
69128972 GATTATGG
1 GTTTA-AG
*
69128980 GTTTAGG
1 GTTTAAG
* **
69128987 GATTATT
1 GTTTAAG
*
69128994 GTTTATG
1 GTTTAAG
69129001 GTTTAAG
1 GTTTAAG
* *
69129008 GGTTGAG
1 GTTTAAG
69129015 GTTTAAG
1 GTTTAAG
69129022 GTTTAAGG
1 GTTTAA-G
69129030 GTTT-AG
1 GTTTAAG
*
69129036 GATTTATG
1 G-TTTAAG
* *
69129044 TTTTATG
1 GTTTAAG
* *
69129051 ATTTAGG
1 GTTTAAG
69129058 GTTTAAG
1 GTTTAAG
**
69129065 GGATAGAG
1 GTTTA-AG
69129073 G-TTAAGG
1 GTTTAA-G
69129080 GTTTAAG
1 GTTTAAG
69129087 GTTTA
1 GTTTA
69129092 GATTAATTAG
Statistics
Matches: 141, Mismatches: 31, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
6 4 0.03
7 114 0.81
8 22 0.16
9 1 0.01
ACGTcount: A:0.24, C:0.01, G:0.31, T:0.45
Consensus pattern (7 bp):
GTTTAAG
Found at i:69132600 original size:25 final size:24
Alignment explanation
Indices: 69132554--69132599 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
69132544 TGTCGAAACT
*
69132554 ATTTTTAAATTTGAAAAGAAAATC
1 ATTTTTAAATTTGAAAAAAAAATC
69132578 ATTTTTAAATTTGAAAAAAAAA
1 ATTTTTAAATTTGAAAAAAAAA
69132600 AGAACCGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (24 bp):
ATTTTTAAATTTGAAAAAAAAATC
Found at i:69140262 original size:22 final size:21
Alignment explanation
Indices: 69140209--69140262 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
69140199 ATGTTTTTTA
69140209 TCTTCTATTTTTTCAGGAAAT
1 TCTTCTATTTTTTCAGGAAAT
69140230 TCTTCTATTTTTTCAGGAAAT
1 TCTTCTATTTTTTCAGGAAAT
*
69140251 TCTTTTATTTTT
1 TCTTCTATTTTT
69140263 ACAATAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.59
Consensus pattern (21 bp):
TCTTCTATTTTTTCAGGAAAT
Found at i:69154218 original size:43 final size:43
Alignment explanation
Indices: 69154157--69154262 Score: 133
Period size: 43 Copynumber: 2.5 Consensus size: 43
69154147 TTTTTTAGCA
* *
69154157 CATGTTCTTTAGCTGCGTTTTTGAGAGAAGT-GCCGCTAAAGGT
1 CATGTTTTTTAGCTGCGTTTTTGAGA-AAATCGCCGCTAAAGGT
* * *
69154200 CATGTTTTTTAGCTGCGTTTTTGGGAAAATCGTCTCTAAAGGT
1 CATGTTTTTTAGCTGCGTTTTTGAGAAAATCGCCGCTAAAGGT
* *
69154243 CATGCTTTTTAGCGGCGTTT
1 CATGTTTTTTAGCTGCGTTT
69154263 GTAAAAAAAG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 3 0.05
43 52 0.95
ACGTcount: A:0.19, C:0.16, G:0.25, T:0.40
Consensus pattern (43 bp):
CATGTTTTTTAGCTGCGTTTTTGAGAAAATCGCCGCTAAAGGT
Found at i:69154282 original size:43 final size:43
Alignment explanation
Indices: 69154188--69154282 Score: 100
Period size: 43 Copynumber: 2.2 Consensus size: 43
69154178 TGAGAGAAGT
* * * *** **
69154188 GCCGCTAAAGGTCATGTTTTTTAGCTGCGTTTTTGGGAAAATC
1 GCCGCTAAAGGTCATGCTTTTTAGCGGCGTTTGTAAAAAAAGA
* *
69154231 GTCTCTAAAGGTCATGCTTTTTAGCGGCGTTTGTAAAAAAAGA
1 GCCGCTAAAGGTCATGCTTTTTAGCGGCGTTTGTAAAAAAAGA
69154274 GCCGCTAAA
1 GCCGCTAAA
69154283 TATCATATTC
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
GCCGCTAAAGGTCATGCTTTTTAGCGGCGTTTGTAAAAAAAGA
Found at i:69154552 original size:35 final size:35
Alignment explanation
Indices: 69154502--69154610 Score: 128
Period size: 35 Copynumber: 3.1 Consensus size: 35
69154492 GGTGTTACAT
* *
69154502 GAAGTATCGGTGTTGTGGCGGGACGTTAATTGAAA
1 GAAGTATCGGTGTTGTGGCAGGATGTTAATTGAAA
* * * *
69154537 GAAGTATCAGCGTTGTGGCAAGATTTTAATTGAAAGA
1 GAAGTATCGGTGTTGTGGCAGGATGTTAATTG-AA-A
* *
69154574 GAAGTTTCGGTGTTGTGGAAGGATGTTAATTGAAA
1 GAAGTATCGGTGTTGTGGCAGGATGTTAATTGAAA
69154609 GA
1 GA
69154611 TGAGTGGCGT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
35 29 0.48
36 4 0.07
37 27 0.45
ACGTcount: A:0.30, C:0.06, G:0.33, T:0.30
Consensus pattern (35 bp):
GAAGTATCGGTGTTGTGGCAGGATGTTAATTGAAA
Found at i:69154589 original size:37 final size:37
Alignment explanation
Indices: 69154502--69154610 Score: 125
Period size: 37 Copynumber: 3.0 Consensus size: 37
69154492 GGTGTTACAT
** *
69154502 GAAGTATCGGTGTTGTGGCGGGACGTTAATTG-AA-A
1 GAAGTATCGGTGTTGTGGCAAGATGTTAATTGAAAGA
* * *
69154537 GAAGTATCAGCGTTGTGGCAAGATTTTAATTGAAAGA
1 GAAGTATCGGTGTTGTGGCAAGATGTTAATTGAAAGA
*
69154574 GAAGTTTCGGTGTTGTGG-AAGGATGTTAATTGAAAGA
1 GAAGTATCGGTGTTGTGGCAA-GATGTTAATTGAAAGA
69154611 TGAGTGGCGT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
35 26 0.43
36 4 0.07
37 31 0.51
ACGTcount: A:0.30, C:0.06, G:0.33, T:0.30
Consensus pattern (37 bp):
GAAGTATCGGTGTTGTGGCAAGATGTTAATTGAAAGA
Found at i:69162388 original size:890 final size:891
Alignment explanation
Indices: 69159753--69162467 Score: 4238
Period size: 890 Copynumber: 3.0 Consensus size: 891
69159743 CAGAGCATGG
69159753 TCAGCCATGCCATGAATACTCAAGCCTACAATTATAGCAGTCCAATGCCCCAACTTTTTGTGGCT
1 TCAGCCATGCCATGAATACTCAAGCCTACAATTATAGCAGTCCAATGCCCCAACTTTTTGTGGCT
*
69159818 TATTGTCCGAAAAACAGTTACCGCACTATCAATGCCTCCGCACTTGGAATACATTTCGATCAGCA
66 TATTGTCCGAAAAACAGTTACCGCACTATCAATGCCTCCGCACTTGGAATACATTTCGATGAGCA
69159883 CTGTCCCAACCACCCCATCTAATTCGATTCCATTTTTAACAATATACGAATGTATCAATCTTCCC
131 CTGTCCCAACCACCCCATCTAATTCGATTCCATTTTTAACAATATACGAATGTATCAATCTTCCC
*
69159948 GTGCCAAGACTAGCTAATCCAAAGACAGCAGAAATCACACTAACTAACGTAGCGTGAGTGGGCCT
196 GTGCCAAGACTAGCTAATCCAGAGACAGCAGAAATCACACTAACTAACGTAGCGTGAGTGGGCCT
69160013 AAATTCCTCCTCCAACATTCTCTCAAACATTTCCAAAGCTTCCAAAAAGCGCAAGTTCAATTTGA
261 AAATTCCTCCTCCAACATTCTCTCAAACATTTCCAAAGCTTCCAAAAAGCGCAAGTTCAATTTGA
*
69160078 ATCCCCCTATCATTGAATTCCACGTGATCAAATTTCTTGTGGGCATTTGATCAAACAATTTACAA
326 ATCCTCCTATCATTGAATTCCACGTGATCAAATTTCTTGTGGGCATTTGATCAAACAATTTACAA
* *
69160143 GCGGACTTAGTATCTCCAGCTTTCATATACCCATTAATCATAGTATTCCACGAAACT-AATTCCT
391 GCGGAATTAGTATCTCCAGCTTTCATAAACCCATTAATCATAGTATTCCACGAAACTAAATTCCT
69160207 ATTTGGCATGTTCTCGAATATCTTTCTAGCAGTCTCAACCTCCCCACATTTCGCCAACCCATCAA
456 ATTTGGCATGTTCTCGAATATCTTTCTAGCAGTCTCAACCTCCCCACATTTCGCCAACCCATCAA
69160272 TCAAAACCGTCCATGAAAAACAATCCTTTTCAGGCATTTCATCAAACACCTTCATGGCAGCCTTA
521 TCAAAACCGTCCATGAAAAACAATCCTTTTCAGGCATTTCATCAAACACCTTCATGGCAGCCTTA
69160337 ACTTCTCCACACCTTGCATACCCATCAAGCAAAGAATTCCATGAAACCAAATCTTTCTCATCCAT
586 ACTTCTCCACACCTTGCATACCCATCAAGCAAAGAATTCCATGAAACCAAATCTTTCTCATCCAT
* **
69160402 TTGATCAAACACTGTGTAACCAGAACCAATCTCGCCGCACTTGGAATACAAATTTGATATC--TT
651 TTGATCAAACACTGTGTAACCAGAACCAATCTCGCCGCACTTGGAATACAAA-TT-A-ACCAAAC
* * * * * * * * ** *
69160465 TTGCTTCTTCA-AGA--CAAC-CAGCTCG--GCATAATATGTCCACCAAA-CAACCATAATGTTC
713 TAGC--CTGCACAAATTTATCTAATC-CGAAGC-CAAGCT-T-CA--AAACCAACC--CATG---
* * * * * * * * *
69160523 TATAGCATGTTTAATTCCATATTCATTT-ATCATCATATTAAAATATTTGTGACCAT-CGTTAAT
765 TAT---TTG-TT--TGCC---TTC-TTTCA-AAGCA-GTT--AA-CTTAG-CA-CATGCCTTAAT
* * ** * * * *** ** * ** ** ** *
69160586 CAATC-CAACATGACTACAAGCATTAAGCACACCAACAAAAG-TTATAGCATTAGG-CTTCACAC
813 C-A-CGC-A-AGGA-AACGTGAATTCATCTGGCGGA-AAATGACCA-AGCAGAAGGAC-GAACAG
** ** * * ** *
69160648 CAATTCTGCGCATTTCAAGAAATAGC
870 GGA-GAT-AGC--TTCATGGGATTGC
*
69160674 TTCAGAGCATGGTCAGCCATGCCATGAATACTCAAGCCTACAATTATAGCAGTCCAATGCCCCAA
1 -TCAG-CCA---T--GCCA-----TGAATACTCAAGCCTACAATTATAGCAGTCCAATGCCCCAA
69160739 CTTTTTGTGGCTTATTGTCCGAAAAACAGTTACCGCACTATCAATGCCTCCGCACTTGGAATACA
54 CTTTTTGTGGCTTATTGTCCGAAAAACAGTTACCGCACTATCAATGCCTCCGCACTTGGAATACA
69160804 TTTCGATGAGCACTGTCCCAACCACCCCATCTAATTCGATTCCATTTTTAACAATATACGAATGT
119 TTTCGATGAGCACTGTCCCAACCACCCCATCTAATTCGATTCCATTTTTAACAATATACGAATGT
69160869 ATCAATCTTCCCGTGCCAAGACTAGCTAATCCAGAGACAGCAGAAATCACACTAACTAACGTAGC
184 ATCAATCTTCCCGTGCCAAGACTAGCTAATCCAGAGACAGCAGAAATCACACTAACTAACGTAGC
*
69160934 CTGAGTGGGCCTAAATTCCTCCTCCAACATTCTCTCAAACATTTCCAAAGCTTCCAAAAAGCGCA
249 GTGAGTGGGCCTAAATTCCTCCTCCAACATTCTCTCAAACATTTCCAAAGCTTCCAAAAAGCGCA
69160999 AGTTCAATTTGAATCCTCCTATCATTGAATTCCACGTGATCAAATTTCTTGTGGGCATTTGATCA
314 AGTTCAATTTGAATCCTCCTATCATTGAATTCCACGTGATCAAATTTCTTGTGGGCATTTGATCA
69161064 AACAATTTACAAGCGGAATTAGTATCTCCAGCTTTCATAAACCCATTAATCATAGTATTCCACGA
379 AACAATTTACAAGCGGAATTAGTATCTCCAGCTTTCATAAACCCATTAATCATAGTATTCCACGA
69161129 AACTAAATTCCTATTTGGCATGTTCTCGAATATCTTTCTAGCAGTCTCAACCTCCCCACATTTCG
444 AACTAAATTCCTATTTGGCATGTTCTCGAATATCTTTCTAGCAGTCTCAACCTCCCCACATTTCG
69161194 CCAACCCATCAATCAAAACCGTCCATGAAAAACAATCCTTTTCAGGCATTTCATCAAACACCTTC
509 CCAACCCATCAATCAAAACCGTCCATGAAAAACAATCCTTTTCAGGCATTTCATCAAACACCTTC
*
69161259 ATGGCAGCCTTAACTTCTCCACACCTTGCATACCCGTCAAGCAAAGAATTCCATGAAACCAAATC
574 ATGGCAGCCTTAACTTCTCCACACCTTGCATACCCATCAAGCAAAGAATTCCATGAAACCAAATC
* *
69161324 TTTCTCATCCATTTGATCAAACACTGCGTAAGCAGAACCAATCTCGCCGCACTTGGAATACAAAT
639 TTTCTCATCCATTTGATCAAACACTGTGTAACCAGAACCAATCTCGCCGCACTTGGAATACAAAT
69161389 TAACCAAACTAGCCTGCACAAATTTATCTAATCCGAAGCCAAGCTTCAAAACCAACCCATGTATT
704 TAACCAAACTAGCCTGCACAAATTTATCTAATCCGAAGCCAAGCTTCAAAACCAACCCATGTATT
69161454 TGTTTGCCTTCTTTCAAAGCAGTTAACTTAGCACATGCCTTAATCACGCAAGGAAACGTGAATTC
769 TGTTTGCCTTCTTTCAAAGCAGTTAACTTAGCACATGCCTTAATCACGCAAGGAAACGTGAATTC
69161519 ATCTGGCGGAAAATGACCAAGCAGAAGGACGAACAGGGAGATAGCTTCATGGGATTGC
834 ATCTGGCGGAAAATGACCAAGCAGAAGGACGAACAGGGAGATAGCTTCATGGGATTGC
69161577 -CAGCCATGCCATGAATACTCAAGCCTACAATTATAGCAGTCCAATGCCCCAACTTTTTGTGGCT
1 TCAGCCATGCCATGAATACTCAAGCCTACAATTATAGCAGTCCAATGCCCCAACTTTTTGTGGCT
*
69161641 TATTGTCCAAAAAACAGTTACCGCACTATCAATGCCTCCGCACTTGGAATACATTTCGATGAGCA
66 TATTGTCCGAAAAACAGTTACCGCACTATCAATGCCTCCGCACTTGGAATACATTTCGATGAGCA
69161706 CTGTCCCAACCACCCCATCTAATTCGATTCCATTTTTAACAATATACGAATGTATCAATCTTCCC
131 CTGTCCCAACCACCCCATCTAATTCGATTCCATTTTTAACAATATACGAATGTATCAATCTTCCC
69161771 GTGCCAAGACTAGCTAATCCAGAGACAGCAGAAATCACACTAACTAACGTAGCGTGAGTGGGCCT
196 GTGCCAAGACTAGCTAATCCAGAGACAGCAGAAATCACACTAACTAACGTAGCGTGAGTGGGCCT
69161836 AAATTCCTCCTCCAACATTCTCTCAAACATTTCCAAAGCTTCCAAAAAGCGCAAGTTCAATTTGA
261 AAATTCCTCCTCCAACATTCTCTCAAACATTTCCAAAGCTTCCAAAAAGCGCAAGTTCAATTTGA
69161901 ATCCTCCTATCATTGAATTCCACGTGATCAAATTTCTTGTGGGCATTTGATCAAACAATTTACAA
326 ATCCTCCTATCATTGAATTCCACGTGATCAAATTTCTTGTGGGCATTTGATCAAACAATTTACAA
69161966 GCGGAATTAGTATCTCCAGCTTTCATAAACCCATTAATCATAGTATTCCACGAAACTAAATTCCT
391 GCGGAATTAGTATCTCCAGCTTTCATAAACCCATTAATCATAGTATTCCACGAAACTAAATTCCT
69162031 ATTTGGCATGTTCTCGAATATCTTTCTAGCAGTCTCAACCTCCCCACATTTCGCCAACCCATCAA
456 ATTTGGCATGTTCTCGAATATCTTTCTAGCAGTCTCAACCTCCCCACATTTCGCCAACCCATCAA
69162096 TCAAAACCGTCCATGAAAAACAATCCTTTTCAGGCATTTCATCAAACACCTTCATGGCAGCCTTA
521 TCAAAACCGTCCATGAAAAACAATCCTTTTCAGGCATTTCATCAAACACCTTCATGGCAGCCTTA
69162161 ACTTCTCCACACCTTGCATACCCATCAAGCAAAGAATTCCATGAAACCAAATCTTTCTCATCCAT
586 ACTTCTCCACACCTTGCATACCCATCAAGCAAAGAATTCCATGAAACCAAATCTTTCTCATCCAT
69162226 TTGATCAAACACTGTGTAACCAGAACCAATCTCGCCGCACTTGGAATACAAATTAACCAAACTAG
651 TTGATCAAACACTGTGTAACCAGAACCAATCTCGCCGCACTTGGAATACAAATTAACCAAACTAG
69162291 CCTGCACAAATTTATCTAATCCGAAGCCAAGCTTCAAAACCAACCCATGTATTTGTTTGCCTTCT
716 CCTGCACAAATTTATCTAATCCGAAGCCAAGCTTCAAAACCAACCCATGTATTTGTTTGCCTTCT
69162356 TTCAAAGCAGTTAACTTAGCACATGCCTTAATCACGCAAGGAAACGTGAATTCATCTGGCGGAAA
781 TTCAAAGCAGTTAACTTAGCACATGCCTTAATCACGCAAGGAAACGTGAATTCATCTGGCGGAAA
69162421 ATGACCAAGCAGAAGGACGAACAGGGAGATAGCTTCATGGGATTGC
846 ATGACCAAGCAGAAGGACGAACAGGGAGATAGCTTCATGGGATTGC
69162467 T
1 T
69162468 GGTTTTGTAT
Statistics
Matches: 1698, Mismatches: 68, Indels: 85
0.92 0.04 0.05
Matches are distributed among these distances:
890 874 0.51
895 4 0.00
897 1 0.00
900 2 0.00
901 3 0.00
903 9 0.01
905 2 0.00
906 1 0.00
907 15 0.01
908 12 0.01
909 3 0.00
910 2 0.00
911 5 0.00
912 8 0.00
913 3 0.00
914 2 0.00
916 2 0.00
917 6 0.00
918 4 0.00
921 3 0.00
922 4 0.00
923 4 0.00
924 2 0.00
926 1 0.00
927 3 0.00
928 4 0.00
930 3 0.00
931 9 0.01
932 8 0.00
933 436 0.26
934 256 0.15
935 5 0.00
936 2 0.00
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (891 bp):
TCAGCCATGCCATGAATACTCAAGCCTACAATTATAGCAGTCCAATGCCCCAACTTTTTGTGGCT
TATTGTCCGAAAAACAGTTACCGCACTATCAATGCCTCCGCACTTGGAATACATTTCGATGAGCA
CTGTCCCAACCACCCCATCTAATTCGATTCCATTTTTAACAATATACGAATGTATCAATCTTCCC
GTGCCAAGACTAGCTAATCCAGAGACAGCAGAAATCACACTAACTAACGTAGCGTGAGTGGGCCT
AAATTCCTCCTCCAACATTCTCTCAAACATTTCCAAAGCTTCCAAAAAGCGCAAGTTCAATTTGA
ATCCTCCTATCATTGAATTCCACGTGATCAAATTTCTTGTGGGCATTTGATCAAACAATTTACAA
GCGGAATTAGTATCTCCAGCTTTCATAAACCCATTAATCATAGTATTCCACGAAACTAAATTCCT
ATTTGGCATGTTCTCGAATATCTTTCTAGCAGTCTCAACCTCCCCACATTTCGCCAACCCATCAA
TCAAAACCGTCCATGAAAAACAATCCTTTTCAGGCATTTCATCAAACACCTTCATGGCAGCCTTA
ACTTCTCCACACCTTGCATACCCATCAAGCAAAGAATTCCATGAAACCAAATCTTTCTCATCCAT
TTGATCAAACACTGTGTAACCAGAACCAATCTCGCCGCACTTGGAATACAAATTAACCAAACTAG
CCTGCACAAATTTATCTAATCCGAAGCCAAGCTTCAAAACCAACCCATGTATTTGTTTGCCTTCT
TTCAAAGCAGTTAACTTAGCACATGCCTTAATCACGCAAGGAAACGTGAATTCATCTGGCGGAAA
ATGACCAAGCAGAAGGACGAACAGGGAGATAGCTTCATGGGATTGC
Found at i:69167138 original size:30 final size:31
Alignment explanation
Indices: 69167082--69167139 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
69167072 AGTTTTGGTG
69167082 GTGGTGCCCATGAGAAAGGCGACACCAATGA
1 GTGGTGCCCATGAGAAAGGCGACACCAATGA
* *
69167113 GTGGTGCCCATGGGAAA-GTGACACCAA
1 GTGGTGCCCATGAGAAAGGCGACACCAA
69167140 AGTATGGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.31, C:0.22, G:0.33, T:0.14
Consensus pattern (31 bp):
GTGGTGCCCATGAGAAAGGCGACACCAATGA
Found at i:69170142 original size:28 final size:28
Alignment explanation
Indices: 69170097--69170177 Score: 135
Period size: 28 Copynumber: 2.9 Consensus size: 28
69170087 AATGAATCTA
*
69170097 ATTTATATTACAACGTTTGTATTTTTGC
1 ATTTATATTACAAAGTTTGTATTTTTGC
* *
69170125 ATTTATATTTCAAAGTTTATATTTTTGC
1 ATTTATATTACAAAGTTTGTATTTTTGC
69170153 ATTTATATTACAAAGTTTGTATTTT
1 ATTTATATTACAAAGTTTGTATTTT
69170178 GTATGTATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (28 bp):
ATTTATATTACAAAGTTTGTATTTTTGC
Found at i:69173213 original size:31 final size:31
Alignment explanation
Indices: 69173177--69173254 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
69173167 TTTCTTCTTT
* *
69173177 CCTTCTCTTTTATTCTCTTTTTTTCCTTTCC
1 CCTTCTCTTTTATTCTATTTTTTTCCCTTCC
* *
69173208 CCTTCTCTTCTATTCTATTTTTTTCCCTTCT
1 CCTTCTCTTTTATTCTATTTTTTTCCCTTCC
* *
69173239 CATTCTCTTTTCTTCT
1 CCTTCTCTTTTATTCT
69173255 TTATTTTGCT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.05, C:0.32, G:0.00, T:0.63
Consensus pattern (31 bp):
CCTTCTCTTTTATTCTATTTTTTTCCCTTCC
Found at i:69177394 original size:71 final size:71
Alignment explanation
Indices: 69177262--69177394 Score: 178
Period size: 71 Copynumber: 1.9 Consensus size: 71
69177252 CCATGTTGTG
* * * *
69177262 ACATCCAACTTTGAACCAAGAGGGGGAGCATACATCCATCAATGCCACGAAACCCATAAGCCAAA
1 ACATCCAACTTCGAACAAAGAGGGGGAGCATACAACCATCAATGCCACGAAACCCAGAAGCCAAA
69177327 GTCGCA
66 GTCGCA
* * * *
69177333 ACATCCAACTTCGAACTAAAG-GGGGGAGCATACAACCATTAATGTCACGACATCCAGAAGCC
1 ACATCCAACTTCGAAC-AAAGAGGGGGAGCATACAACCATCAATGCCACGAAACCCAGAAGCC
69177395 CATGTCACGA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
71 50 0.94
72 3 0.06
ACGTcount: A:0.38, C:0.29, G:0.19, T:0.15
Consensus pattern (71 bp):
ACATCCAACTTCGAACAAAGAGGGGGAGCATACAACCATCAATGCCACGAAACCCAGAAGCCAAA
GTCGCA
Found at i:69177408 original size:71 final size:71
Alignment explanation
Indices: 69177261--69177408 Score: 172
Period size: 71 Copynumber: 2.1 Consensus size: 71
69177251 CCCATGTTGT
* * * *
69177261 GACATCCAACTTTGAACCAAGAGGGGGAGCATACATCCATCAATGCCACGAAACCCATAAGCCAA
1 GACATCCAACTTCGAACAAAGAGGGGGAGCATACAACCATCAATGCCACGAAACCCAGAAGCCAA
*
69177326 AGTCGC
66 AGTCAC
* * * * * *
69177332 AACATCCAACTTCGAACTAAAG-GGGGGAGCATACAACCATTAATGTCACGACATCCAGAAGCCC
1 GACATCCAACTTCGAAC-AAAGAGGGGGAGCATACAACCATCAATGCCACGAAACCCAGAAGCCA
*
69177396 ATGTCAC
65 AAGTCAC
69177403 GACATC
1 GACATC
69177409 TAATTCAAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
71 60 0.95
72 3 0.05
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.16
Consensus pattern (71 bp):
GACATCCAACTTCGAACAAAGAGGGGGAGCATACAACCATCAATGCCACGAAACCCAGAAGCCAA
AGTCAC
Found at i:69177764 original size:16 final size:16
Alignment explanation
Indices: 69177726--69177771 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
69177716 TGTTTTCTTT
69177726 ATTTTAACATATAATA
1 ATTTTAACATATAATA
* *
69177742 ATCTTAACTTAATAA-A
1 ATTTTAACAT-ATAATA
69177758 ATTTTAACATATAA
1 ATTTTAACATATAA
69177772 AACCTTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
15 4 0.16
16 17 0.68
17 4 0.16
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (16 bp):
ATTTTAACATATAATA
Found at i:69186162 original size:35 final size:35
Alignment explanation
Indices: 69186116--69186185 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
69186106 AAAGAAGCCC
69186116 AATTTGGCAAGGGCATATGAATAGCGCAAAATCAA
1 AATTTGGCAAGGGCATATGAATAGCGCAAAATCAA
*
69186151 AATTTGGCAAGGGCATATGAATAGCGTAAAATCAA
1 AATTTGGCAAGGGCATATGAATAGCGCAAAATCAA
69186186 CTTTTTGAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (35 bp):
AATTTGGCAAGGGCATATGAATAGCGCAAAATCAA
Found at i:69188331 original size:27 final size:26
Alignment explanation
Indices: 69188255--69188397 Score: 142
Period size: 27 Copynumber: 5.3 Consensus size: 26
69188245 AGAGGTCAAT
* *
69188255 AAATGACTGAAATACCCTTATAAGGTA
1 AAATGACTGAAATACCC-CATAGGGTA
** *
69188282 AAATGACCAAAATACCCATATAGGGTA
1 AAATGACTGAAATACCC-CATAGGGTA
*
69188309 AAATGACCGAAATACCTCCATAGGGTA
1 AAATGACTGAAATACC-CCATAGGGTA
**
69188336 AAATGGTTGAAATATCCCCATAGGGTA
1 AAATGACTGAAATA-CCCCATAGGGTA
* * *
69188363 AGATGATTGAAATACCCCTATAGGGTT
1 AAATGACTGAAATACCCC-ATAGGGTA
69188390 AAATGACT
1 AAATGACT
69188398 ATTATACCCC
Statistics
Matches: 99, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.04
27 92 0.93
28 3 0.03
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (26 bp):
AAATGACTGAAATACCCCATAGGGTA
Found at i:69196160 original size:27 final size:28
Alignment explanation
Indices: 69196057--69196170 Score: 155
Period size: 27 Copynumber: 4.2 Consensus size: 28
69196047 AAAGGTCAAT
*
69196057 AAATGACCGAAATACCC-CTATAAGGTA
1 AAATGACCGAAATACCCTCTATAGGGTA
* * *
69196084 AAATGACCAAAATACCC-ATATAGGATA
1 AAATGACCGAAATACCCTCTATAGGGTA
69196111 AAATGACCGAAATA-CCTCTATAGGGTA
1 AAATGACCGAAATACCCTCTATAGGGTA
*
69196138 AAATGACCGAAATACCCTC-ATAGGGTT
1 AAATGACCGAAATACCCTCTATAGGGTA
69196165 AAATGA
1 AAATGA
69196171 TTGTTATACC
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 2 0.03
27 71 0.92
28 4 0.05
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.20
Consensus pattern (28 bp):
AAATGACCGAAATACCCTCTATAGGGTA
Found at i:69196365 original size:26 final size:26
Alignment explanation
Indices: 69196335--69196441 Score: 169
Period size: 26 Copynumber: 4.1 Consensus size: 26
69196325 AGAAGGAAGT
*
69196335 ATACTGTTACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
69196361 ATACTGTTATTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
*
69196387 ATACTGTTACTGGCAGCTTTGCTACG
1 ATACTGTTACTGGCAGCTTTGCTGCG
* *
69196413 ATACTATTACTGGTAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGCG
69196439 ATA
1 ATA
69196442 TTGGTGTGTT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGCG
Found at i:69196584 original size:28 final size:28
Alignment explanation
Indices: 69196544--69196602 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
69196534 ATTGTGCTAT
*
69196544 ACTATTATTGTATCGGGCTAAGGCCCAC
1 ACTATTACTGTATCGGGCTAAGGCCCAC
*
69196572 ACTATTACTGTATTGGGCTAAGGCCCAC
1 ACTATTACTGTATCGGGCTAAGGCCCAC
69196600 ACT
1 ACT
69196603 GTACTGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (28 bp):
ACTATTACTGTATCGGGCTAAGGCCCAC
Found at i:69197090 original size:265 final size:265
Alignment explanation
Indices: 69196607--69197135 Score: 918
Period size: 265 Copynumber: 2.0 Consensus size: 265
69196597 CACACTGTAC
* *
69196607 TGTTTCTGAATAAGGCTCAAGCCCAGACTGTTACTGCATGTTGTCTACTGTTTAACTGATAGTGG
1 TGTTACTGAATAAGGCTCAAGCCCAGACTGTTACTGCATGTTGTATACTGTTTAACTGATAGTGG
*
69196672 ATTACACACTAATTTTTCGTAAACTCACTTTTTCCTTTTAACTGTACAGGTAAGTTTATGTTGGG
66 ATTACACACTAATTTTTCGTAAACTCACTTTTTCCTTTTAACTATACAGGTAAGTTTATGTTGGG
*
69196737 TTTTGTCTATGTAGTAAGGCTTTTAAGTTTGTTTAATTTGTTAATTGGGTTTTTGCTTACTTATT
131 TTTTGTCTATGTAATAAGGCTTTTAAGTTTGTTTAATTTGTTAATTGGGTTTTTGCTTACTTATT
*
69196802 TTAAACTACTAGTTTATGAGAGGACAAACTTTCAAAATAATTACTGTTTTCAAAGACACAAAATT
196 TTAAACTACTAGTTTAGGAGAGGACAAACTTTCAAAATAATTACTGTTTTCAAAGACACAAAATT
69196867 TAAAT
261 TAAAT
* *
69196872 TGTTACTGAATAGGGCTCAGGCCCAGACTGTTACTGCATGTTGTATACTGTTTAACTGATAGTGG
1 TGTTACTGAATAAGGCTCAAGCCCAGACTGTTACTGCATGTTGTATACTGTTTAACTGATAGTGG
*
69196937 ATTACACATTAATTTTTCGTAAACTCACTTTTTCCTTTTAACTATACAGGTAAGTTTATGTTGGG
66 ATTACACACTAATTTTTCGTAAACTCACTTTTTCCTTTTAACTATACAGGTAAGTTTATGTTGGG
* *
69197002 TTTTGTCTATGTAATAAGGAC-TTTAAGTTTGTTTAATTTTTTAATTGGGTTTTTGCTTGCTTAT
131 TTTTGTCTATGTAATAAGG-CTTTTAAGTTTGTTTAATTTGTTAATTGGGTTTTTGCTTACTTAT
* *
69197066 TTTAAATTGA-TAGTTTAGGAGAGGACAAACTTTCAAAATAATTACTGTTTTCAAATACACAAAA
195 TTTAAACT-ACTAGTTTAGGAGAGGACAAACTTTCAAAATAATTACTGTTTTCAAAGACACAAAA
69197130 TTTAAA
259 TTTAAA
69197136 CAATAGAGTT
Statistics
Matches: 250, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
265 248 0.99
266 2 0.01
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (265 bp):
TGTTACTGAATAAGGCTCAAGCCCAGACTGTTACTGCATGTTGTATACTGTTTAACTGATAGTGG
ATTACACACTAATTTTTCGTAAACTCACTTTTTCCTTTTAACTATACAGGTAAGTTTATGTTGGG
TTTTGTCTATGTAATAAGGCTTTTAAGTTTGTTTAATTTGTTAATTGGGTTTTTGCTTACTTATT
TTAAACTACTAGTTTAGGAGAGGACAAACTTTCAAAATAATTACTGTTTTCAAAGACACAAAATT
TAAAT
Found at i:69203943 original size:264 final size:264
Alignment explanation
Indices: 69203509--69204005 Score: 796
Period size: 264 Copynumber: 1.9 Consensus size: 264
69203499 TGTCGGGCCG
* ** *
69203509 TCTCGAGATAAAGGAAAGGAGAGAGTTGTAGATGAGTAGCTATTTTGGTCTGTGCTTTCATGATT
1 TCTCGAGATAAAAGAAAGGAGAGAGTCATAGATGAGTAGCTATTTTGGTCTGTGCTTTCACGATT
* *
69203574 TAAATTTAAAATATTATATATGGATTGTTGCAATTAGCTTGTTTAAAGCATTAACTTATTTGTTT
66 TAAATTTAAAATATTATATATAGATTGTTGCAATTAGCTTGTTTAAAGCATGAACTTATTTGTTT
*
69203639 CAAAAATAGGTAAGTAAGAAATAGTTTATAACTTGTGAAAAATGTGATGATATGCAGATGATGAT
131 CAAAAATAGGTAAGTAAGAAATAGTTGATAACTTGTGAAAAATGTGATGATATGCAGATGATGAT
* *
69203704 ATGAAATGGTATGAATTAGTTTGAGTATGATAAGAATTACCATATTTAGCTAAATAAGACATTGA
196 ATGAAATGGTATGAATTAATTTGAGTATAATAAGAATTACCATATTTAGCTAAATAAGACATTGA
69203769 GTCC
261 GTCC
* * *
69203773 TCTCGAGATAAAAGAAAGGCGAGGGTCATAGATGAGTAGCTATTTTGGTTTGTGCTTTCACGATT
1 TCTCGAGATAAAAGAAAGGAGAGAGTCATAGATGAGTAGCTATTTTGGTCTGTGCTTTCACGATT
* * * *
69203838 TAAATTTAAAATGTTATATATAGATTTTTGCAATTAGCTTGTTTAAGGTATGAACTTATTTGTTT
66 TAAATTTAAAATATTATATATAGATTGTTGCAATTAGCTTGTTTAAAGCATGAACTTATTTGTTT
** * * *
69203903 CATGAATAGTTAAGTATGAAATAGTTGATAACTTGTGAAAAATGTGATGATCTGCAGATGATGAT
131 CAAAAATAGGTAAGTAAGAAATAGTTGATAACTTGTGAAAAATGTGATGATATGCAGATGATGAT
*
69203968 ATGAAATGGTATGAATTAATTTGAGTATAATATGAATT
196 ATGAAATGGTATGAATTAATTTGAGTATAATAAGAATT
69204006 GGTATGTACT
Statistics
Matches: 211, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
264 211 1.00
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (264 bp):
TCTCGAGATAAAAGAAAGGAGAGAGTCATAGATGAGTAGCTATTTTGGTCTGTGCTTTCACGATT
TAAATTTAAAATATTATATATAGATTGTTGCAATTAGCTTGTTTAAAGCATGAACTTATTTGTTT
CAAAAATAGGTAAGTAAGAAATAGTTGATAACTTGTGAAAAATGTGATGATATGCAGATGATGAT
ATGAAATGGTATGAATTAATTTGAGTATAATAAGAATTACCATATTTAGCTAAATAAGACATTGA
GTCC
Found at i:69209999 original size:7 final size:7
Alignment explanation
Indices: 69209987--69210017 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
69209977 TTACCCAAAC
69209987 AAAAATT
1 AAAAATT
69209994 AAAAATT
1 AAAAATT
69210001 AAAAATT
1 AAAAATT
69210008 AAAAATT
1 AAAAATT
69210015 AAA
1 AAA
69210018 CTATCAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAAAATT
Found at i:69214798 original size:6 final size:6
Alignment explanation
Indices: 69214789--69214853 Score: 121
Period size: 6 Copynumber: 10.8 Consensus size: 6
69214779 CACGTCTAGC
*
69214789 GCCATG GCCATT GCCATT GCCATT GCCATT GCCATT GCCATT GCCATT
1 GCCATT GCCATT GCCATT GCCATT GCCATT GCCATT GCCATT GCCATT
69214837 GCCATT GCCATT GCCAT
1 GCCATT GCCATT GCCAT
69214854 CTTCAGAAGA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.17, C:0.34, G:0.18, T:0.31
Consensus pattern (6 bp):
GCCATT
Found at i:69216113 original size:21 final size:22
Alignment explanation
Indices: 69216081--69216122 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
69216071 TAAATTAATA
69216081 AAATTTTATAAAAATA-AAAAT
1 AAATTTTATAAAAATAGAAAAT
69216102 AAATATTT-TAAAAATAGAAAA
1 AAAT-TTTATAAAAATAGAAAA
69216123 AATCGGTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (22 bp):
AAATTTTATAAAAATAGAAAAT
Found at i:69216115 original size:22 final size:23
Alignment explanation
Indices: 69216068--69216115 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
69216058 CGATTCAGTC
69216068 AAATAAATTAATAAAATTTTATAA
1 AAATAAA-TAATAAAATTTTATAA
69216092 AAATAAA-AATAAATATTTTA-AA
1 AAATAAATAATAAA-ATTTTATAA
69216114 AA
1 AA
69216116 TAGAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 10 0.43
23 6 0.26
24 7 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AAATAAATAATAAAATTTTATAA
Found at i:69217631 original size:59 final size:59
Alignment explanation
Indices: 69217566--69217681 Score: 223
Period size: 59 Copynumber: 2.0 Consensus size: 59
69217556 GTAAATCTGT
*
69217566 AAATAAATAAAGTTTGGAGGACTAAATTGAATGCGCGAATTACATAGAGGGGCTGGAGC
1 AAATAAATAAAGTCTGGAGGACTAAATTGAATGCGCGAATTACATAGAGGGGCTGGAGC
69217625 AAATAAATAAAGTCTGGAGGACTAAATTGAATGCGCGAATTACATAGAGGGGCTGGA
1 AAATAAATAAAGTCTGGAGGACTAAATTGAATGCGCGAATTACATAGAGGGGCTGGA
69217682 AGGGAAATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.40, C:0.10, G:0.28, T:0.22
Consensus pattern (59 bp):
AAATAAATAAAGTCTGGAGGACTAAATTGAATGCGCGAATTACATAGAGGGGCTGGAGC
Found at i:69227533 original size:132 final size:132
Alignment explanation
Indices: 69227349--69227907 Score: 1001
Period size: 132 Copynumber: 4.2 Consensus size: 132
69227339 CTGCATTGAC
* * * * * * * *
69227349 AGTGAAGCAGATCGAAGATGACGGATTTTACCTCCTTGTGGCTACAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGCGGAGTACATGGAAGCCA
* * *
69227414 GTAATTCTACTTCCTTGAACAACAGTGGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
69227479 GT
131 GT
69227481 AGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGCGGAGTACATGGAAGCCA
1 AGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGCGGAGTACATGGAAGCCA
69227546 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
69227611 GT
131 GT
69227613 AGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGCGGAGTACATGGAAGCCA
1 AGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGCGGAGTACATGGAAGCCA
69227678 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
69227743 GT
131 GT
*
69227745 AGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGCGGAGTACATTGAAGCCA
1 AGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGCGGAGTACATGGAAGCCA
69227810 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
69227875 GT
131 GT
*
69227877 AGTGGAGCAGATCGAAGATGGCGGATTTTAC
1 AGTGGAGCAGATTGAAGATGGCGGATTTTAC
69227908 TTATTTACGA
Statistics
Matches: 414, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 414 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (132 bp):
AGTGGAGCAGATTGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGCGGAGTACATGGAAGCCA
GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
GT
Found at i:69227869 original size:44 final size:44
Alignment explanation
Indices: 69227689--69227869 Score: 104
Period size: 44 Copynumber: 4.1 Consensus size: 44
69227679 TAATTCTACT
69227689 TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
1 TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
* ** ** ** * * *
69227733 TCCCT-AAGCAGTAGTGGAGCAGATTGAAGATGGCGGATTTTACC
1 TCCCTGGA-CAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
*** * * * * *
69227777 TCCCTGTGGTTATAGCGGAGTACATTGAAG---CCAGTAAT-TCTA-C
1 TCCCTG-GACAACAGTGGAATAGATTGAAGATTTCAG--ATCT-TATC
69227820 TTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
1 -TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
69227865 TCCCT
1 TCCCT
69227870 AAGCAGTAGT
Statistics
Matches: 97, Mismatches: 28, Indels: 24
0.65 0.19 0.16
Matches are distributed among these distances:
42 2 0.02
43 19 0.20
44 56 0.58
45 17 0.18
46 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (44 bp):
TCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
Found at i:69235517 original size:44 final size:43
Alignment explanation
Indices: 69235426--69235554 Score: 145
Period size: 44 Copynumber: 2.9 Consensus size: 43
69235416 AGCTCATACA
* * * * *
69235426 ATGCTAACGTCCGAGACGTGGTCTTACATGTAATTACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAAATCG
*
69235469 ATGCC-ACTGTCCCAGTCAG-GGTCTTACACGTAAATCACAAATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGT-AATCACAAATCG
69235513 ATGCCAACGTCCCAGACGTGGTCTTACACGATAATACACAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAAT-CACAAA
69235555 GGAATCCTAT
Statistics
Matches: 72, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.03
43 23 0.32
44 38 0.53
45 9 0.12
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACAAATCG
Found at i:69238740 original size:40 final size:40
Alignment explanation
Indices: 69238656--69238836 Score: 172
Period size: 40 Copynumber: 4.5 Consensus size: 40
69238646 TTGAATGCTG
* * * * * *
69238656 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
** * *
69238696 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
69238736 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
** *
69238776 TCCGGGTTAAGTCCCGAAGGCATT-GTATGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTA-AA
* *
69238816 -CCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCA
69238837 CTTGAACGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 30 0.25
40 84 0.69
41 8 0.07
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:69246610 original size:40 final size:39
Alignment explanation
Indices: 69246579--69246788 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
69246569 GGACTAAGAT
* *
69246579 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
69246619 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
69246659 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
69246699 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
69246739 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
69246778 CCGAAGGCATT
1 CCGAAGGCATT
69246789 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:69246742 original size:120 final size:120
Alignment explanation
Indices: 69246526--69246788 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
69246516 TTGAATGCTG
* *
69246526 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
69246590 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
69246646 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
69246709 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
69246765 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
69246789 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:69246808 original size:79 final size:80
Alignment explanation
Indices: 69246527--69246823 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
69246517 TGAATGCTGT
* ** * * * **
69246527 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
69246590 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
69246607 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
69246671 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
69246687 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
69246751 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
69246766 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
69246824 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:69267516 original size:52 final size:52
Alignment explanation
Indices: 69267433--69267533 Score: 193
Period size: 52 Copynumber: 1.9 Consensus size: 52
69267423 TAAGGAAAAG
*
69267433 TAATGGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
69267485 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
69267534 TATGTGCATG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (52 bp):
TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
Found at i:69274076 original size:52 final size:52
Alignment explanation
Indices: 69273989--69274089 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
69273979 TACGGAATAG
* *
69273989 TAATGGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
1 TAATAGACAACAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
69274041 TAATAGACAACAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
1 TAATAGACAACAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
69274090 TATGTGCATG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (52 bp):
TAATAGACAACAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
Found at i:69277733 original size:64 final size:64
Alignment explanation
Indices: 69277659--69277783 Score: 232
Period size: 64 Copynumber: 2.0 Consensus size: 64
69277649 AGGTAAGGTT
69277659 TCAATAGTTTTGGGAATTGACTGTTGTAAGTAATTCAAATTAAGTGACTGAGATTGAGTTTTCG
1 TCAATAGTTTTGGGAATTGACTGTTGTAAGTAATTCAAATTAAGTGACTGAGATTGAGTTTTCG
* *
69277723 TCAATAGTTTTGGGAATTGACTGTTGTAAGTAATTCAGATTAAGTGGCTGAGATTGAGTTT
1 TCAATAGTTTTGGGAATTGACTGTTGTAAGTAATTCAAATTAAGTGACTGAGATTGAGTTT
69277784 CCAATTGTCA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.39
Consensus pattern (64 bp):
TCAATAGTTTTGGGAATTGACTGTTGTAAGTAATTCAAATTAAGTGACTGAGATTGAGTTTTCG
Found at i:69285122 original size:64 final size:64
Alignment explanation
Indices: 69285047--69285174 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
69285037 TGAGGTAAGG
* *
69285047 TTGTCGATAGTTTTGGGAATTGACTATTGTAAGTAACTCAGATTAAGTGACTAAGATTGAGTTT
1 TTGTCAATAGTTTTGGGAATTAACTATTGTAAGTAACTCAGATTAAGTGACTAAGATTGAGTTT
* * *
69285111 TTGTCAATAGTTTTGGGAATTAACTGTTGTAAGTAATTCAGATTAAGTGACTGAGATTGAGTTT
1 TTGTCAATAGTTTTGGGAATTAACTATTGTAAGTAACTCAGATTAAGTGACTAAGATTGAGTTT
69285175 CCAATTGTCG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (64 bp):
TTGTCAATAGTTTTGGGAATTAACTATTGTAAGTAACTCAGATTAAGTGACTAAGATTGAGTTT
Found at i:69310187 original size:37 final size:37
Alignment explanation
Indices: 69310137--69310215 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69310127 TTATTACGAA
* * *
69310137 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
69310174 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
69310211 GTCTT
1 GTCTT
69310216 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:69310412 original size:47 final size:47
Alignment explanation
Indices: 69310334--69310525 Score: 267
Period size: 47 Copynumber: 4.1 Consensus size: 47
69310324 CCCTTCGGGA
** * * * * *
69310334 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69310381 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69310428 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69310475 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
69310522 CTTA
1 CTTA
69310526 CTGTCATTTC
Statistics
Matches: 132, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69323245 original size:27 final size:27
Alignment explanation
Indices: 69323207--69323465 Score: 303
Period size: 27 Copynumber: 9.7 Consensus size: 27
69323197 CCCTTTGGGA
69323207 GGTATTTCGGTAATTTTACCCATC-AG
1 GGTATTTCGGTAATTTTACCCATCGAG
* * *
69323233 GTGTATTTTGGTAA-TTTACCCATAGGG
1 G-GTATTTCGGTAATTTTACCCATCGAG
69323260 GGTATTTCGGTAATTTTACCCATCGAG
1 GGTATTTCGGTAATTTTACCCATCGAG
* *
69323287 GGTATTTTGGTAATTTTACCCATCGTG
1 GGTATTTCGGTAATTTTACCCATCGAG
* * * * *
69323314 GTTATTTCTGTAATTTTACTCTTGGAG
1 GGTATTTCGGTAATTTTACCCATCGAG
* *
69323341 GATATTTCGATAATTTTACCCATCG-G
1 GGTATTTCGGTAATTTTACCCATCGAG
* * *
69323367 GGATACTTCGAT-ATTTTACCCTTCGAG
1 GG-TATTTCGGTAATTTTACCCATCGAG
*
69323394 GGTATTTCAGTAA-TTTACCCATCGAG
1 GGTATTTCGGTAATTTTACCCATCGAG
*
69323420 GGTATTTCGATAATTTTACCCATCGAG
1 GGTATTTCGGTAATTTTACCCATCGAG
*
69323447 GGTATTTTGGTAATTTTAC
1 GGTATTTCGGTAATTTTAC
69323466 AACCTAAAGG
Statistics
Matches: 194, Mismatches: 32, Indels: 13
0.81 0.13 0.05
Matches are distributed among these distances:
26 64 0.33
27 130 0.67
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACCCATCGAG
Found at i:69323274 original size:53 final size:53
Alignment explanation
Indices: 69323193--69323462 Score: 310
Period size: 53 Copynumber: 5.1 Consensus size: 53
69323183 TAACAGTCAG
* *
69323193 TTTACCCTTTGGGAGGTATTTCGGTAATTTTACCCATC-AGGTGTATTTTGGTAA
1 TTTACCCATCGGG-GGTATTTCGGTAATTTTACCCATCGAGG-GTATTTTGGTAA
*
69323247 TTTACCCATAGGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTAA
1 TTTACCCATCGGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTAA
* * * * * * * * *
69323300 TTTTACCCATCGTGGTTATTTCTGTAATTTTACTCTTGGAGGATATTTCGATAA
1 -TTTACCCATCGGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTAA
* * * * **
69323354 TTTTACCCATCGGGGATACTTCGAT-ATTTTACCCTTCGAGGGTATTTCAGTAA
1 -TTTACCCATCGGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTAA
* *
69323407 TTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAA
1 TTTACCCATCGGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTAA
69323460 TTT
1 TTT
69323463 TACAACCTAA
Statistics
Matches: 185, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
52 21 0.11
53 87 0.47
54 77 0.42
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.41
Consensus pattern (53 bp):
TTTACCCATCGGGGGTATTTCGGTAATTTTACCCATCGAGGGTATTTTGGTAA
Found at i:69334500 original size:60 final size:59
Alignment explanation
Indices: 69334436--69334687 Score: 210
Period size: 60 Copynumber: 4.2 Consensus size: 59
69334426 ATGATTGGCA
* * * *
69334436 CATCCCTTTTCATAATTTGATAGCCAAAGCTATCCTTTTTCATAATTTGATGGTCATCAC
1 CATCCCTTTTCATAATTCGATAGCCAAAGCCATCCCTTTTCATAATTTGATGGCCA-CAC
* * * * *
69334496 CATCCCTTTTCATGATTCGATGGTCATCA-CCATCCCTTTTCATAATTTGAAGGCCGA-AGC
1 CATCCCTTTTCATAATTCGATAGCCA-AAGCCATCCCTTTTCATAATTTGATGGCC-ACA-C
* * ** * *
69334556 CATCCCTTTTCATAGA-TCGATAGTCGAAGCCATCCCTTTTCATAGA-TTGATACCCAAAG
1 CATCCCTTTTCATA-ATTCGATAGCCAAAGCCATCCCTTTTCATA-ATTTGATGGCCACAC
** * **
69334615 CATCCC-TTTCATAGA-TCGATAGCTGAAGCCATCCCTTTTCATAGTTTGATGGTCGTCAC
1 CATCCCTTTTCATA-ATTCGATAGCCAAAGCCATCCCTTTTCATAATTTGATGG-CCACAC
69334674 CATCCCTTTTCATA
1 CATCCCTTTTCATA
69334688 GTTTGATGGT
Statistics
Matches: 156, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
58 40 0.26
59 17 0.11
60 95 0.61
61 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.13, T:0.35
Consensus pattern (59 bp):
CATCCCTTTTCATAATTCGATAGCCAAAGCCATCCCTTTTCATAATTTGATGGCCACAC
Found at i:69334506 original size:30 final size:30
Alignment explanation
Indices: 69334436--69334714 Score: 168
Period size: 30 Copynumber: 9.4 Consensus size: 30
69334426 ATGATTGGCA
* * *
69334436 CATCCCTTTTCATAATTTGATAGCCA-AAGC
1 CATCCCTTTTCATAATTTGATGGTCATCA-C
* *
69334466 TATCCTTTTTCATAATTTGATGGTCATCAC
1 CATCCCTTTTCATAATTTGATGGTCATCAC
* *
69334496 CATCCCTTTTCATGATTCGATGGTCATCAC
1 CATCCCTTTTCATAATTTGATGGTCATCAC
* *
69334526 CATCCCTTTTCATAATTTGAAGGCCGA--AGC
1 CATCCCTTTTCATAATTTGATGGTC-ATCA-C
* *
69334556 CATCCCTTTTCATAGA-TCGATAGTCGA--AGC
1 CATCCCTTTTCATA-ATTTGATGGTC-ATCA-C
*** * *
69334586 CATCCCTTTTCATAGA-TTGATACCCA-AAG
1 CATCCCTTTTCATA-ATTTGATGGTCATCAC
* * *
69334615 CATCCC-TTTCATAGA-TCGATAG-C-TGAAGC
1 CATCCCTTTTCATA-ATTTGATGGTCAT-CA-C
* *
69334644 CATCCCTTTTCATAGTTTGATGGTCGTCAC
1 CATCCCTTTTCATAATTTGATGGTCATCAC
* *
69334674 CATCCCTTTTCATAGTTTGATGGTCGTCAC
1 CATCCCTTTTCATAATTTGATGGTCATCAC
*
69334704 CATCCCCTTTC
1 CATCCCTTTTC
69334715 TTGATCGGTA
Statistics
Matches: 208, Mismatches: 29, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.00
28 16 0.08
29 14 0.07
30 171 0.82
31 5 0.02
32 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.35
Consensus pattern (30 bp):
CATCCCTTTTCATAATTTGATGGTCATCAC
Found at i:69334636 original size:58 final size:61
Alignment explanation
Indices: 69334525--69334664 Score: 193
Period size: 58 Copynumber: 2.4 Consensus size: 61
69334515 ATGGTCATCA
* *
69334525 CCATCCCTTTTCATA-ATTTGA-AGGCCGAAGCCATCCCTTTTCATAGATCGATAG-TCGAAG
1 CCATCCCTTTTCATAGA-TTGATAGCCCAAAGCCATCCCTTTTCATAGATCGATAGCT-GAAG
69334585 CCATCCCTTTTCATAGATTGATA-CCCAAAG-CATCCC-TTTCATAGATCGATAGCTGAAG
1 CCATCCCTTTTCATAGATTGATAGCCCAAAGCCATCCCTTTTCATAGATCGATAGCTGAAG
*
69334643 CCATCCCTTTTCATAGTTTGAT
1 CCATCCCTTTTCATAGATTGAT
69334665 GGTCGTCACC
Statistics
Matches: 74, Mismatches: 3, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
58 41 0.55
59 7 0.09
60 24 0.32
61 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.32
Consensus pattern (61 bp):
CCATCCCTTTTCATAGATTGATAGCCCAAAGCCATCCCTTTTCATAGATCGATAGCTGAAG
Found at i:69338735 original size:80 final size:80
Alignment explanation
Indices: 69338602--69338798 Score: 317
Period size: 80 Copynumber: 2.5 Consensus size: 80
69338592 NNNNNNNNNN
* * *
69338602 CCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 CCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
69338667 ATATCCGGGCTAAGA
66 ATATCCGGGCTAAGA
69338682 CCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA
1 CCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA
69338746 TATATCCGGGCTAAGA
65 TATATCCGGGCTAAGA
** *
69338762 CCCGAAGGCATTTGTGCTTGTGGTTATATCC-GGCTAA
1 CCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
69338799 ATTCCGAAGA
Statistics
Matches: 109, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
79 8 0.07
80 98 0.90
81 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
CCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
ATATCCGGGCTAAGA
Found at i:69338794 original size:40 final size:40
Alignment explanation
Indices: 69338602--69338778 Score: 311
Period size: 40 Copynumber: 4.4 Consensus size: 40
69338592 NNNNNNNNNN
* * *
69338602 CCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGA
1 CCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGA
69338642 CCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGA
1 CCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGA
69338682 CCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGA
1 CCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGA
69338722 CCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGA
1 CCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGA
69338762 CCCGAAGGCATTTGTGC
1 CCCGAAGGCATTTGTGC
69338779 TTGTGGTTAT
Statistics
Matches: 133, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
40 130 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
CCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGA
Found at i:69348489 original size:40 final size:39
Alignment explanation
Indices: 69348428--69348639 Score: 219
Period size: 40 Copynumber: 5.3 Consensus size: 39
69348418 CATTTGAATG
* * *
69348428 ATATCTGGGCTAAGCCCCGAAGGCAATTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TT
* * * * *
69348468 TTATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGTT
* *
69348508 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG-TT
* * * * *
69348548 TTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGTT
* *
69348588 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGT-GTT
69348628 ATATCC-GGCTAA
1 ATATCCGGGCTAA
69348640 ATTCCGAAGA
Statistics
Matches: 137, Mismatches: 31, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
39 8 0.06
40 125 0.91
41 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGTT
Found at i:69348576 original size:80 final size:80
Alignment explanation
Indices: 69348438--69348639 Score: 343
Period size: 80 Copynumber: 2.5 Consensus size: 80
69348428 ATATCTGGGC
* *
69348438 TAAGCCCCGAAGGCAATTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTACGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTACGAG
69348503 TTGCTATACCCGGGT
66 TTGCTATACCCGGGT
* *
69348518 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTACGAG
69348583 TTGCTATACCCGGGT
66 TTGCTATACCCGGGT
* *
69348598 TAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCC-GGCTAA
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
69348640 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
79 6 0.05
80 109 0.95
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTACGAG
TTGCTATACCCGGGT
Found at i:69350403 original size:43 final size:42
Alignment explanation
Indices: 69350309--69350414 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 42
69350299 TAGGGTTTCC
* * *
69350309 GAGATTACGTGTAAGACCATATTTAGGATATGGCATCGATAT
1 GAGATTTCGTGTAAGACCATATATAGGACATGGCATCGATAT
* * * *
69350351 GAGACTTCGTGTAAGACCATGTATGGGACATTGGCATTGATAT
1 GAGATTTCGTGTAAGACCATATATAGGACA-TGGCATCGATAT
*
69350394 GTGATTTCGTGTAAGACCATA
1 GAGATTTCGTGTAAGACCATA
69350415 GCTGAGCTAT
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
42 24 0.45
43 29 0.55
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (42 bp):
GAGATTTCGTGTAAGACCATATATAGGACATGGCATCGATAT
Found at i:69364783 original size:750 final size:745
Alignment explanation
Indices: 69363357--69364785 Score: 1754
Period size: 750 Copynumber: 1.9 Consensus size: 745
69363347 TGCACATCTG
* * * **
69363357 TCAGTCTAGATTTTATTTTAGCTAAAATTGAACCGTCATCAAACAACACCAATCATGTGTTCAAC
1 TCAGTCTAGATTTTAATTCAGCTAAAATCGAACCGTCATCAAACAACACCAATCACATGTTCAAC
* * *
69363422 ACTTCTAAAGCAAACAAAGATTTTCTACTCAGTCCATCAGCAATGACATTAGCCTTTCCCAGATT
66 ACTTCTAAAGAAAACAAAGATTTTCTACTCAGTCCATCAGCAATGAAATTAGCCTTTCCCAGATG
* * * *
69363487 ATAATCAATGATCAAATCATATTATTTCAATAACTTGAGCCATCTACGCTGTCTCAAATTCAAAC
131 ATAATCAATGATCAAATCATAATATTTCAATAACTCGAACCATCTACGCTATCTCAAATTCAAAC
* *
69363552 CTTTTTGCGACGTCAAATACTTCAGGCTTTTATAATCTGTAAAGATATTAAATTTTTCTCCATAC
196 CTTTTTGCGACGTCAAATACTTCAAGCTTTTATAATCTGTAAAGATATGAAATTTTTCTCCATAC
* * * * **
69363617 AAATGGTGCCGCCAAATCTTCAAAGTGAGCAAAATAGCTGCAAGCTCTAAATCGTGTGTTGGATA
261 AAATGGTGCCGCCAAATCTTCAAAGCGAACAAAATAGCTGCAAGCTCTAAATCATGAGTCAGATA
* * * *
69363682 TTTATTTTCGTGTAGTTTCAACTGTCTAGAAGCATACGCTATTACTTTGCCTTCTTGCATCAAAA
326 TTTATTTTCATGCAGTTTCAACTGTCTAG-AG-A-ACGCTATCACTGTGCCTTCTTGCATC--AA
* *
69363747 CTAGCTCAACCCGTTCAATGAAGCATCACTATAAATAAAAAAATTATTTATCAAACTCTGATTGA
386 CTAGCTCAACCCGTTCAATGAAGCATCAATATAAATAAAAAAATTATTTATCAAACTCTGACTGA
* * * *
69363812 ACCAACATAGGTACCTTGGTTAATAAAGCTTTCAACTAATTAAAACTTTGCTTACATTTCTTGAC
451 ACCAACATAGGTACCTCGGTTAAAAAAGCTTTCAACTAATTAAAACTTTGCTGACATTTCTGGAC
*
69363877 AAAGCTTTCAACAATATCGTCAACGGCATAGCAATCATTGAGAATCCCTTGACCAATCTTCTATA
516 AAAGCTTTCAACAATATCGTCAACGGCATAGCAATCATCGAGAATCCCTTGACCAATCTTCTATA
* * * *
69363942 ATATCTAGCTAAACCTAGAAAAATTTTGACTTCAGATTCATTTCTAGGAGGTTTGTAGTCTACCA
581 ATATCTAGCTAAACCCAGAAAAATTCTGACTTCAGATTCATTTCTAGGAGGCTTCTAGTCTACCA
* * *
69364007 CAGCTGAGATTTTACTTGGGTCAACTCTATTGCAGAAATGTCTATTGTAGGTTTCTAGTCTCATC
646 CAGCTGAGATTATACTCGGATCAACTCTATTGCAGAAATGTCTATTGTAGGTTTCTAGTCTCATC
69364072 AAATTTTTGATCTTCGCAAATCTATTACAAAAACA
711 AAATTTTTGATCTTCGCAAATCTATTACAAAAACA
* ** ** *
69364107 TCAGTCTAGCTTTTAATTCAGCTAAAATCGAACCGTCATCAGTCAATGCCAATCACATGTTCAAT
1 TCAGTCTAGATTTTAATTCAGCTAAAATCGAACCGTCATCAAACAACACCAATCACATGTTCAAC
* *
69364172 GC-TCGTAAAGAAAACAAAGATTTTCTACTCAGTGCATCAGCAATGAAATTAGCCTTTCCCAGAT
66 ACTTC-TAAAGAAAACAAAGATTTTCTACTCAGTCCATCAGCAATGAAATTAGCCTTTCCCAGAT
* * **
69364236 GATAATCAATGATCAAATCATAATCTTTCAATAACTCGAATCATCTGTGCTATCTCAAATTCAAA
130 GATAATCAATGATCAAATCATAATATTTCAATAACTCGAACCATCTACGCTATCTCAAATTCAAA
* * * * * *
69364301 TCTTTTTGTGACGTCAAATACTTCAAGCTTTTATGATCTGTGAAGATATGACATTTTTCTCCCTA
195 CCTTTTTGCGACGTCAAATACTTCAAGCTTTTATAATCTGTAAAGATATGAAATTTTTCTCCATA
* * *
69364366 CAAATTGTGTCGCCAAATCTTCAAAGCGAACACAATAGCTGCAAGCTCTAAATCATGAGTCAGAT
260 CAAATGGTGCCGCCAAATCTTCAAAGCGAACAAAATAGCTGCAAGCTCTAAATCATGAGTCAGAT
* * *
69364431 ATTTCTTTTCATGCGGTTTCAACTGTCTAG-G-A-GC-A-CAC-GTGCCTTGGTTG-A-C-A-TA
325 ATTTATTTTCATGCAGTTTCAACTGTCTAGAGAACGCTATCACTGTGCCTT-CTTGCATCAACTA
* * * * * * * ** *
69364486 GC-CAACCCGTTCAATGAAGCGTCAATGTCAAT-CAACACTTCTTTATCGGACTCTGGCTGAACC
389 GCTCAACCCGTTCAATGAAGCATCAATATAAATAAAAAAATTATTTATCAAACTCTGACTGAACC
* * * *
69364549 AACATAGGTGCCTCGGTTAAAAAAGCTTTCAGCTGATTAAAATTTTGCTGACATTTCTCGGACCA
454 AACATAGGTACCTCGGTTAAAAAAGCTTTCAACTAATTAAAACTTTGCTGACATTTCT-GG---A
* * * *
69364614 TTCAAATTTAACATCTTTTTACAACAATTTCGTCAATGGCGTAGCAATCATCGAGAATCCCTTGA
515 --C------AA-AGC--TTT-CAACAATATCGTCAACGGCATAGCAATCATCGAGAATCCCTTGA
* * * *
69364679 CGAATCTTCTATAATATCTTA-CTACACCCAGAAAACTTCTGACTTCAGATAT-ATTTCTCGGAG
568 CCAATCTTCTATAATATC-TAGCTAAACCCAGAAAAATTCTGACTTCAGAT-TCATTTCTAGGAG
* *
69364742 GCTTCTAGTCTATCACAGCTGTGATTATACTCGGATCAACTCTA
631 GCTTCTAGTCTACCACAGCTGAGATTATACTCGGATCAACTCTA
69364786 ATACCATTTG
Statistics
Matches: 573, Mismatches: 86, Indels: 40
0.82 0.12 0.06
Matches are distributed among these distances:
734 74 0.13
735 27 0.05
736 4 0.01
737 1 0.00
738 1 0.00
740 2 0.00
741 7 0.01
742 5 0.01
743 1 0.00
744 2 0.00
745 1 0.00
746 2 0.00
747 2 0.00
748 1 0.00
749 5 0.01
750 435 0.76
751 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (745 bp):
TCAGTCTAGATTTTAATTCAGCTAAAATCGAACCGTCATCAAACAACACCAATCACATGTTCAAC
ACTTCTAAAGAAAACAAAGATTTTCTACTCAGTCCATCAGCAATGAAATTAGCCTTTCCCAGATG
ATAATCAATGATCAAATCATAATATTTCAATAACTCGAACCATCTACGCTATCTCAAATTCAAAC
CTTTTTGCGACGTCAAATACTTCAAGCTTTTATAATCTGTAAAGATATGAAATTTTTCTCCATAC
AAATGGTGCCGCCAAATCTTCAAAGCGAACAAAATAGCTGCAAGCTCTAAATCATGAGTCAGATA
TTTATTTTCATGCAGTTTCAACTGTCTAGAGAACGCTATCACTGTGCCTTCTTGCATCAACTAGC
TCAACCCGTTCAATGAAGCATCAATATAAATAAAAAAATTATTTATCAAACTCTGACTGAACCAA
CATAGGTACCTCGGTTAAAAAAGCTTTCAACTAATTAAAACTTTGCTGACATTTCTGGACAAAGC
TTTCAACAATATCGTCAACGGCATAGCAATCATCGAGAATCCCTTGACCAATCTTCTATAATATC
TAGCTAAACCCAGAAAAATTCTGACTTCAGATTCATTTCTAGGAGGCTTCTAGTCTACCACAGCT
GAGATTATACTCGGATCAACTCTATTGCAGAAATGTCTATTGTAGGTTTCTAGTCTCATCAAATT
TTTGATCTTCGCAAATCTATTACAAAAACA
Found at i:69385684 original size:3 final size:3
Alignment explanation
Indices: 69385676--69385706 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
69385666 CATGAAACAA
69385676 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
69385707 TTATTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:69385711 original size:3 final size:3
Alignment explanation
Indices: 69385705--69385746 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
69385695 ATAATAATAA
69385705 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
69385747 AGATGAAGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:69388816 original size:30 final size:31
Alignment explanation
Indices: 69388765--69388832 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
69388755 AGTTTCATTT
* *
69388765 CAGTCACTCAACTTTAGAAAAA-TAACAAAA
1 CAGTCACTCAACGTTACAAAAAGTAACAAAA
* *
69388795 CAGTCACT-AACGTTATCAAAAAGTGACAAAT
1 CAGTCACTCAACGTTA-CAAAAAGTAACAAAA
69388826 CAGTCAC
1 CAGTCAC
69388833 GCACTAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 6 0.19
30 13 0.41
31 13 0.41
ACGTcount: A:0.47, C:0.22, G:0.10, T:0.21
Consensus pattern (31 bp):
CAGTCACTCAACGTTACAAAAAGTAACAAAA
Found at i:69388985 original size:3 final size:3
Alignment explanation
Indices: 69388979--69389012 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
69388969 GAAGAAGATT
69388979 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
69389013 GATTGTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:69389797 original size:3 final size:3
Alignment explanation
Indices: 69389786--69389819 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
69389776 AATTCTTTTT
*
69389786 TTC TT- TTC TTC TTC TTC TTC TTT TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
69389820 TTGATAAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (3 bp):
TTC
Found at i:69389812 original size:12 final size:12
Alignment explanation
Indices: 69389778--69389821 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
69389768 CCATCCCAAA
69389778 TTCTT-TTTTTC
1 TTCTTCTTTTTC
*
69389789 TT-TTCTTCTTC
1 TTCTTCTTTTTC
69389800 TTCTTCTTTTTC
1 TTCTTCTTTTTC
69389812 TTCTTCTTTT
1 TTCTTCTTTT
69389822 GATAAACCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 2 0.07
11 9 0.31
12 18 0.62
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTCTTCTTTTTC
Found at i:69390180 original size:29 final size:26
Alignment explanation
Indices: 69390134--69390199 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 26
69390124 ATACTTACAT
69390134 TTTTAAATCATAAAAGTAAAAAAATTAAA
1 TTTTAAA--ATAAAAGTAAAAAAA-TAAA
*
69390163 TTCCTTAAAATAAAAGTAAAAGAATAAA
1 TT--TTAAAATAAAAGTAAAAAAATAAA
69390191 TTTTAAAAT
1 TTTTAAAAT
69390200 CACTAAGAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
26 7 0.21
28 6 0.18
29 16 0.47
31 5 0.15
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (26 bp):
TTTTAAAATAAAAGTAAAAAAATAAA
Found at i:69394885 original size:24 final size:25
Alignment explanation
Indices: 69394820--69394912 Score: 98
Period size: 25 Copynumber: 3.7 Consensus size: 25
69394810 CTCGTGTGAG
**
69394820 CATATAAACGGGAAGCTCATTTGAGC
1 CATAT-AACGGGAAGCTCATAAGAGC
*
69394846 TATATAACGGGAAGCTCATAAGAGC
1 CATATAACGGGAAGCTCATAAGAGC
* * *
69394871 CATA-ATCGGGAAGCTCGTGAGAGC
1 CATATAACGGGAAGCTCATAAGAGC
* *
69394895 CATATATCAGGAAGCTCA
1 CATATAACGGGAAGCTCA
69394913 AGAGATCCAA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
24 21 0.37
25 32 0.56
26 4 0.07
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (25 bp):
CATATAACGGGAAGCTCATAAGAGC
Found at i:69394929 original size:23 final size:25
Alignment explanation
Indices: 69394855--69394943 Score: 78
Period size: 24 Copynumber: 3.6 Consensus size: 25
69394845 CTATATAACG
*
69394855 GGAAGCTCATA-AGAGCCATA-ATCG
1 GGAAGCTCA-AGAGAGCCATATATCA
**
69394879 GGAAGCTCGTGAGAGCCATATATCA
1 GGAAGCTCAAGAGAGCCATATATCA
*
69394904 GGAAGCTCAAGAGATCCA-ATAT-A
1 GGAAGCTCAAGAGAGCCATATATCA
* *
69394927 GGAGTGCTCATGAGAGC
1 GGA-AGCTCAAGAGAGC
69394944 TAATAAAGGG
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
23 4 0.08
24 31 0.58
25 18 0.34
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.18
Consensus pattern (25 bp):
GGAAGCTCAAGAGAGCCATATATCA
Found at i:69396480 original size:59 final size:58
Alignment explanation
Indices: 69396417--69396558 Score: 158
Period size: 59 Copynumber: 2.4 Consensus size: 58
69396407 GAGGTACGTA
* * * *
69396417 GCGTAAGACCATGGATGAAAGATGCCATGGCAATATGGTACCAGGTAAAAAGGTATATG
1 GCGTAAGACCATGGATGAAAGATGCCATGGCAACACGGTACAAGGTAAAAA-GTATACG
* ** * * *
69396476 GCGTAAGACTATGGATGAAAGACACCATGGCAACACGGTATAAGGTATAAAGTATGCG
1 GCGTAAGACCATGGATGAAAGATGCCATGGCAACACGGTACAAGGTAAAAAGTATACG
* **
69396534 GTGTAAGACCATAAATGAAAGATGC
1 GCGTAAGACCATGGATGAAAGATGC
69396559 TATGACAGCC
Statistics
Matches: 67, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
58 24 0.36
59 43 0.64
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20
Consensus pattern (58 bp):
GCGTAAGACCATGGATGAAAGATGCCATGGCAACACGGTACAAGGTAAAAAGTATACG
Found at i:69401263 original size:5 final size:5
Alignment explanation
Indices: 69401253--69401277 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
69401243 AATCTCGGTG
69401253 AGTTT AGTTT AGTTT AGTTT AGTTT
1 AGTTT AGTTT AGTTT AGTTT AGTTT
69401278 TTTTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
AGTTT
Found at i:69408932 original size:23 final size:26
Alignment explanation
Indices: 69408893--69408960 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
69408883 GTTGAAGAAT
69408893 GGTAAGCTC-TATCGAGCTAA-A-A-C
1 GGTAAGCTCATA-CGAGCTAATATATC
* *
69408916 GGTAAGCTCATAAGAGCTAATATATT
1 GGTAAGCTCATACGAGCTAATATATC
69408942 GGTAAGCTCATACGAGCTA
1 GGTAAGCTCATACGAGCTA
69408961 TGGTGAGTCC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
23 16 0.42
24 3 0.08
25 1 0.03
26 18 0.47
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (26 bp):
GGTAAGCTCATACGAGCTAATATATC
Found at i:69413382 original size:27 final size:27
Alignment explanation
Indices: 69413352--69413410 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
69413342 TGCATGATCC
* *
69413352 GCATGAAATGTATGGGTT-GCATGGAAT
1 GCATGAAATGCAT-GATTCGCATGGAAT
*
69413379 GCATGAAATGCATGATTCGTATGGAAT
1 GCATGAAATGCATGATTCGCATGGAAT
69413406 GCATG
1 GCATG
69413411 GAGTGCATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (27 bp):
GCATGAAATGCATGATTCGCATGGAAT
Found at i:69417265 original size:33 final size:34
Alignment explanation
Indices: 69417209--69417279 Score: 81
Period size: 33 Copynumber: 2.1 Consensus size: 34
69417199 AGTAATCATG
* *
69417209 CAGTATCAGTCTGGGCCTGAGCCCTATACAGTAA
1 CAGTATCAGTCTGGGCCTGAGCCCAAAACAGTAA
* * * *
69417243 CAGTA-CAGTGTGGGCTTTAGCCCAAAATAGTAA
1 CAGTATCAGTCTGGGCCTGAGCCCAAAACAGTAA
69417276 CAGT
1 CAGT
69417280 GCGGGCCTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
33 26 0.84
34 5 0.16
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (34 bp):
CAGTATCAGTCTGGGCCTGAGCCCAAAACAGTAA
Found at i:69418110 original size:27 final size:27
Alignment explanation
Indices: 69417654--69418121 Score: 642
Period size: 27 Copynumber: 17.4 Consensus size: 27
69417644 AAGAGTATAA
* *
69417654 CAGTCATTTTACTCTAT-GGGGGTATTT
1 CAGTCATTTTACCCT-TCGAGGGTATTT
* *
69417681 CAATCATTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
69417708 C-GATTATTTTACCCTTCGAGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
69417735 C-GATCATTTTACCCTTCGAGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
*
69417762 TAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
69417789 TAGTCATTTTACCTTTCG-GGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* * *
69417815 CTGTCATTTTACCTTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
69417842 -TGATCATTTTACCCTTCGGGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
*
69417869 CAGTCATTTTACCTTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
69417896 CAGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
69417923 C-GTTCATTTTACCCTTCGAGGGTATTT
1 CAG-TCATTTTACCCTTCGAGGGTATTT
* *
69417950 CAATCATTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
69417977 CGGTCATTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
69418004 CAGTCATTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
* *
69418031 CGGTCATTTTACCCTTTGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
69418058 CAGTCATTTTACCCTTCGGGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
*
69418085 CGGTCATTTTACCCTTCGAGGGTATTT
1 CAGTCATTTTACCCTTCGAGGGTATTT
69418112 CAGTCATTTT
1 CAGTCATTTT
69418122 CCCACGAATC
Statistics
Matches: 399, Mismatches: 34, Indels: 16
0.89 0.08 0.04
Matches are distributed among these distances:
26 27 0.07
27 370 0.93
28 2 0.01
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (27 bp):
CAGTCATTTTACCCTTCGAGGGTATTT
Found at i:69429048 original size:6 final size:6
Alignment explanation
Indices: 69429037--69429070 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
69429027 AGCAGGGCTC
* *
69429037 ATTTGG ATTTGG ATTTGG ATTTAG ATTTAG ATTT
1 ATTTGG ATTTGG ATTTGG ATTTGG ATTTGG ATTT
69429071 TTATTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (6 bp):
ATTTGG
Found at i:69429123 original size:15 final size:17
Alignment explanation
Indices: 69429105--69429137 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
69429095 TTTAGCTTTA
69429105 TATATT-TT-TATTTTT
1 TATATTATTATATTTTT
69429120 TATATTATTATATTTTT
1 TATATTATTATATTTTT
69429137 T
1 T
69429138 TGAACTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 2 0.12
17 8 0.50
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (17 bp):
TATATTATTATATTTTT
Found at i:69430482 original size:39 final size:40
Alignment explanation
Indices: 69430439--69430587 Score: 187
Period size: 39 Copynumber: 3.8 Consensus size: 40
69430429 CTTCGGTATT
* *
69430439 CCTATTTGTACTCTGGTACCCCTGTTTGTACTTTC-GTA-C
1 CCTATTTGTACTTTGGTACCCCTATTTGTAC-TTCAGTACC
* *
69430478 CCTATTTGTACTTCGGTACCACTATTTGTACTTCAGTACC
1 CCTATTTGTACTTTGGTACCCCTATTTGTACTTCAGTACC
** * *
69430518 CCCGTTTGTACTTTGGTA-CCCTACTAGTACTTCAGTACC
1 CCTATTTGTACTTTGGTACCCCTATTTGTACTTCAGTACC
*
69430557 CCTATTTGTACTTTTGTACCCCTATTTGTAC
1 CCTATTTGTACTTTGGTACCCCTATTTGTAC
69430588 ATTTGTGCCT
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
38 3 0.03
39 63 0.68
40 26 0.28
ACGTcount: A:0.17, C:0.28, G:0.13, T:0.42
Consensus pattern (40 bp):
CCTATTTGTACTTTGGTACCCCTATTTGTACTTCAGTACC
Found at i:69430519 original size:59 final size:58
Alignment explanation
Indices: 69430427--69430587 Score: 189
Period size: 59 Copynumber: 2.7 Consensus size: 58
69430417 TATGGGAATT
* * * *
69430427 TACTTCGGTATTCCTATTTGTAC-TCTGGTACCCCTGTTTGTACTTTCGTACCCTATTTG
1 TACTTCGGTA-CCCTATTTGTACTTC-AGTACCCCTGTTTGTACTTTCGTACCCTACTAG
* *
69430486 TACTTCGGTACCACTATTTGTACTTCAGTACCCCCGTTTGTACTTTGGTACCCTACTAG
1 TACTTCGGTACC-CTATTTGTACTTCAGTACCCCTGTTTGTACTTTCGTACCCTACTAG
* ** *
69430545 TACTTCAGTACCCCTATTTGTACTTTTGTACCCCTATTTGTAC
1 TACTTCGGTA-CCCTATTTGTACTTCAGTACCCCTGTTTGTAC
69430588 ATTTGTGCCT
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
58 1 0.01
59 83 0.94
60 4 0.05
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.42
Consensus pattern (58 bp):
TACTTCGGTACCCTATTTGTACTTCAGTACCCCTGTTTGTACTTTCGTACCCTACTAG
Found at i:69430592 original size:20 final size:19
Alignment explanation
Indices: 69430439--69430593 Score: 134
Period size: 20 Copynumber: 7.8 Consensus size: 19
69430429 CTTCGGTATT
*
69430439 CCTATTTGTACTCTGGTACC
1 CCTATTTGTACT-TTGTACC
*
69430459 CCTGTTTGTACTTTCGTA-C
1 CCTATTTGTACTTT-GTACC
*
69430478 CCTATTTGTACTTCGGTACC
1 CCTATTTGTACTT-TGTACC
* *
69430498 ACTATTTGTACTTCAGTACC
1 CCTATTTGTACTT-TGTACC
**
69430518 CCCGTTTGTACTTTGGTA-C
1 CCTATTTGTACTTT-GTACC
* * *
69430537 CCTACTAGTACTTCAGTACC
1 CCTATTTGTACTT-TGTACC
69430557 CCTATTTGTACTTTTGTACC
1 CCTATTTGTAC-TTTGTACC
69430577 CCTATTTGTACATTTGT
1 CCTATTTGTAC-TTTGT
69430594 GCCTCTGTAA
Statistics
Matches: 109, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
19 30 0.28
20 77 0.71
21 2 0.02
ACGTcount: A:0.17, C:0.27, G:0.14, T:0.43
Consensus pattern (19 bp):
CCTATTTGTACTTTGTACC
Found at i:69433606 original size:16 final size:17
Alignment explanation
Indices: 69433585--69433617 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
69433575 TCCCTGCTAG
*
69433585 TTTGAT-ATTTTTATCT
1 TTTGATGATTTTGATCT
69433601 TTTGATGATTTTGATCT
1 TTTGATGATTTTGATCT
69433618 CATTTTGGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.18, C:0.06, G:0.12, T:0.64
Consensus pattern (17 bp):
TTTGATGATTTTGATCT
Found at i:69437807 original size:20 final size:20
Alignment explanation
Indices: 69437778--69437829 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
69437768 TATAGGAATT
69437778 TACTTCGGTACTCCTGTTTG
1 TACTTCGGTACTCCTGTTTG
* *
69437798 TACTTTGGTACCCCTGTTTG
1 TACTTCGGTACTCCTGTTTG
*
69437818 GACTTCGGTACT
1 TACTTCGGTACT
69437830 GTAACACGCC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.25, G:0.21, T:0.42
Consensus pattern (20 bp):
TACTTCGGTACTCCTGTTTG
Found at i:69439351 original size:26 final size:26
Alignment explanation
Indices: 69439297--69439380 Score: 78
Period size: 26 Copynumber: 3.2 Consensus size: 26
69439287 CACAAATCAA
* ** **
69439297 TCATTTACCCTCGAGGGGCAAAATAG
1 TCATTTACCCTCTAGGGGCATTACGG
69439323 TCATTTACCCTCTAGGGGCATTACGG
1 TCATTTACCCTCTAGGGGCATTACGG
* * * *
69439349 TCATTCTACCTTATAGGGGTATTTCGG
1 TCATT-TACCCTCTAGGGGCATTACGG
69439376 TCATT
1 TCATT
69439381 AAACAACCTT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
26 26 0.54
27 22 0.46
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (26 bp):
TCATTTACCCTCTAGGGGCATTACGG
Found at i:69439366 original size:27 final size:26
Alignment explanation
Indices: 69439322--69439380 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
69439312 GGGCAAAATA
*
69439322 GTCATTTACCCTCTAGGGGCATTACG
1 GTCATTTACCCTATAGGGGCATTACG
* * *
69439348 GTCATTCTACCTTATAGGGGTATTTCG
1 GTCATT-TACCCTATAGGGGCATTACG
69439375 GTCATT
1 GTCATT
69439381 AAACAACCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTCATTTACCCTATAGGGGCATTACG
Found at i:69444174 original size:12 final size:12
Alignment explanation
Indices: 69444157--69444186 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
69444147 CCACACACGC
*
69444157 CCGTGTGTTAGG
1 CCGTGTGCTAGG
69444169 CCGTGTGCTAGG
1 CCGTGTGCTAGG
69444181 CCGTGT
1 CCGTGT
69444187 AACTCATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:69445639 original size:23 final size:24
Alignment explanation
Indices: 69445592--69445639 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
69445582 AACCAAGATT
*
69445592 AATAATCTATCAAATATCATCAAA
1 AATAATCTATCAAACATCATCAAA
* *
69445616 AATAATTTAT-AAACATCATGAAA
1 AATAATCTATCAAACATCATCAAA
69445639 A
1 A
69445640 GTCCCTTAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.29
Consensus pattern (24 bp):
AATAATCTATCAAACATCATCAAA
Found at i:69447369 original size:22 final size:21
Alignment explanation
Indices: 69447327--69447370 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
69447317 ATGCATATTG
*
69447327 AGTTATAATATGTAATGCATT
1 AGTTATAAAATGTAATGCATT
69447348 AGTTAGTAAAATGT-ATGTCATT
1 AGTTA-TAAAATGTAATG-CATT
69447370 A
1 A
69447371 TATGTGGTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (21 bp):
AGTTATAAAATGTAATGCATT
Found at i:69447745 original size:40 final size:40
Alignment explanation
Indices: 69447656--69447919 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
69447646 TTGAATGATG
* *
69447656 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
69447695 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
69447735 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69447774 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69447814 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69447854 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69447895 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69447920 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69447937 original size:120 final size:118
Alignment explanation
Indices: 69447656--69447952 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
69447646 TTGAATGATG
* *
69447656 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
69447716 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
69447774 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
69447839 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
69447895 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
69447953 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:69449532 original size:20 final size:20
Alignment explanation
Indices: 69449507--69449620 Score: 122
Period size: 20 Copynumber: 5.7 Consensus size: 20
69449497 GGTTGTTACA
* *
69449507 GGTACTTCTGTTTGTACTTC
1 GGTACTCCTGTTTGTACTTT
*
69449527 GGTACTCCTGCTTGTACTTT
1 GGTACTCCTGTTTGTACTTT
*
69449547 GGTACCCCTGTTTGTACTTT
1 GGTACTCCTGTTTGTACTTT
* *
69449567 GGTACTCCTTTTTTTACTTT
1 GGTACTCCTGTTTGTACTTT
* * * *
69449587 AGTTCCCCTGTTTGTACTTC
1 GGTACTCCTGTTTGTACTTT
69449607 GGTAC-CCTTGTTTG
1 GGTACTCC-TGTTTG
69449621 CACATTCATG
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
19 2 0.03
20 75 0.97
ACGTcount: A:0.10, C:0.24, G:0.18, T:0.48
Consensus pattern (20 bp):
GGTACTCCTGTTTGTACTTT
Found at i:69449558 original size:40 final size:40
Alignment explanation
Indices: 69449514--69449611 Score: 142
Period size: 40 Copynumber: 2.5 Consensus size: 40
69449504 ACAGGTACTT
*
69449514 CTGTTTGTACTTCGGTACTCCTGCTTGTACTTTGGTACCC
1 CTGTTTGTACTTCGGTACTCCTGCTTGTACTTTAGTACCC
* ** * *
69449554 CTGTTTGTACTTTGGTACTCCTTTTTTTACTTTAGTTCCC
1 CTGTTTGTACTTCGGTACTCCTGCTTGTACTTTAGTACCC
69449594 CTGTTTGTACTTCGGTAC
1 CTGTTTGTACTTCGGTAC
69449612 CCTTGTTTGC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.10, C:0.24, G:0.17, T:0.48
Consensus pattern (40 bp):
CTGTTTGTACTTCGGTACTCCTGCTTGTACTTTAGTACCC
Found at i:69449652 original size:20 final size:20
Alignment explanation
Indices: 69449629--69449676 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
69449619 TGCACATTCA
69449629 TGCCTCTGTAAGCACTATGG
1 TGCCTCTGTAAGCACTATGG
*
69449649 TGCCTCTATAAGCACTATGG
1 TGCCTCTGTAAGCACTATGG
69449669 TGCCTCTG
1 TGCCTCTG
69449677 AAATATGGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.31
Consensus pattern (20 bp):
TGCCTCTGTAAGCACTATGG
Found at i:69457239 original size:20 final size:20
Alignment explanation
Indices: 69457172--69457290 Score: 87
Period size: 20 Copynumber: 6.0 Consensus size: 20
69457162 CTTCTACGAG
*
69457172 TTTGCACTTTGATGCCTCTA
1 TTTGCACTTTGGTGCCTCTA
* * *
69457192 CTTGGACTTTGGTGCCTCTG
1 TTTGCACTTTGGTGCCTCTA
* *
69457212 TTTACACTTTGGTGTCTCTA
1 TTTGCACTTTGGTGCCTCTA
***
69457232 TTTGCACTCCAGTGCCTCTGA
1 TTTGCACTTTGGTGCCTCT-A
** * *
69457253 -TTGCACAATCGTACCTCTA
1 TTTGCACTTTGGTGCCTCTA
**
69457272 TTTGCACTACGGTGCCTCT
1 TTTGCACTTTGGTGCCTCT
69457291 GATAGCACTA
Statistics
Matches: 74, Mismatches: 23, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
19 1 0.01
20 72 0.97
21 1 0.01
ACGTcount: A:0.14, C:0.28, G:0.18, T:0.39
Consensus pattern (20 bp):
TTTGCACTTTGGTGCCTCTA
Found at i:69461155 original size:20 final size:20
Alignment explanation
Indices: 69461120--69461168 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
69461110 ATCATGGTCT
*
69461120 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
69461139 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
69461159 TTGCTTACTT
1 TTGCTTACTT
69461169 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:69461526 original size:50 final size:49
Alignment explanation
Indices: 69461435--69461611 Score: 194
Period size: 50 Copynumber: 3.6 Consensus size: 49
69461425 TCCTGTACTT
* * * * ** **
69461435 CCAATGTCATATCCCAGATATGGTCTTGCATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCAT-TCGGTG
* *
69461485 CCCATGCCATGTCCCAGACATGATCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCAT-TCGGTG
* * **
69461535 CCAACGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATT-AATG
1 CCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATTCGGTG
*
69461583 CCAATGCCATGTCCCAAACATGGTCTTAC
1 CCAATGCCATGTCCCAGACATGGTCTTAC
69461612 ATGGGGTCTC
Statistics
Matches: 108, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
48 29 0.27
49 1 0.01
50 78 0.72
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (49 bp):
CCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATTCGGTG
Found at i:69465752 original size:2 final size:2
Alignment explanation
Indices: 69465745--69465805 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
69465735 TTGAGGTACT
69465745 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
69465787 TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC T
69465806 TTTGTCCTTC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:69472275 original size:55 final size:55
Alignment explanation
Indices: 69472192--69472298 Score: 189
Period size: 55 Copynumber: 1.9 Consensus size: 55
69472182 TTATAGATTG
69472192 CAAATTAATTATTCATGAGCACTATTCAAA-TAAAAGTGATGATTTATCATCTTA
1 CAAATTAATTATTCATGAGCACTATTCAAAGTAAAAGTGATGATTTATCATCTTA
*
69472246 CAAATTTAATTATTCATTAGCACTATTCAAAGTAAAAGTGATGATTTATCATC
1 CAAA-TTAATTATTCATGAGCACTATTCAAAGTAAAAGTGATGATTTATCATC
69472299 CAATGGATAC
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
54 4 0.08
55 25 0.50
56 21 0.42
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.37
Consensus pattern (55 bp):
CAAATTAATTATTCATGAGCACTATTCAAAGTAAAAGTGATGATTTATCATCTTA
Found at i:69474721 original size:8 final size:8
Alignment explanation
Indices: 69474708--69474732 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
69474698 TATGATTACT
69474708 TAAACATA
1 TAAACATA
69474716 TAAACATA
1 TAAACATA
69474724 TAAACATA
1 TAAACATA
69474732 T
1 T
69474733 CCGAAAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (8 bp):
TAAACATA
Found at i:69474884 original size:25 final size:25
Alignment explanation
Indices: 69474856--69475106 Score: 130
Period size: 25 Copynumber: 10.2 Consensus size: 25
69474846 ACACACCATA
* *
69474856 GCTCTTATGAGCTTCCCGTTATTTG
1 GCTCTCATGAGCTTCCCGTTATATG
* *
69474881 GCTCTCCA-GAGCTTCTCGATA-ATTG
1 GCTCT-CATGAGCTTCCCGTTATA-TG
*
69474906 GCTCTCATGAGCTTCCCGATTA-ATA
1 GCTCTCATGAGCTTCCCG-TTATATG
*
69474931 GCTCTTCA-GAGCTTCCCATT-TATG
1 GCTC-TCATGAGCTTCCCGTTATATG
** *
69474955 GCTCGT-ATGAGCTTCATGATA-ATTG
1 GCTC-TCATGAGCTTCCCGTTATA-TG
* *
69474980 GCTCTCACGAGCTTCTCGATTA-ATG
1 GCTCTCATGAGCTTCCCG-TTATATG
* *
69475005 GCTCTCCA-GAGCTTTCCGATAT-TG
1 GCTCT-CATGAGCTTCCCGTTATATG
* ** *
69475029 GCTCGT-ATGAGCTTCTCAAT-TACG
1 GCTC-TCATGAGCTTCCCGTTATATG
* * * *
69475053 ACTCTTATGAGCTTCCCATTACATG
1 GCTCTCATGAGCTTCCCGTTATATG
* *
69475078 GCTCACATGAGCTTCCCATTATATG
1 GCTCTCATGAGCTTCCCGTTATATG
69475103 GCTC
1 GCTC
69475107 GAAAGAGCTT
Statistics
Matches: 174, Mismatches: 34, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
23 4 0.02
24 54 0.31
25 104 0.60
26 12 0.07
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.35
Consensus pattern (25 bp):
GCTCTCATGAGCTTCCCGTTATATG
Found at i:69474976 original size:74 final size:73
Alignment explanation
Indices: 69474889--69475122 Score: 244
Period size: 74 Copynumber: 3.2 Consensus size: 73
69474879 TGGCTCTCCA
* *
69474889 GAGCTTCTCGATAATTGGCTCTCATGAGCTTCCCGATTAATAGCTCTTCAGAGCTTCCCATTTAT
1 GAGCTTCT-GATAATTGGCTCTCATGAGCTTCCCGATTAATGGCTCTACAGAGCTTCCCATTTAT
69474954 GGCTCGTAT
65 GGCTCGTAT
* * * * *
69474963 GAGCTTCATGATAATTGGCTCTCACGAGCTTCTCGATTAATGGCTCTCCAGAGCTTTCCGATAT-
1 GAGCTTC-TGATAATTGGCTCTCATGAGCTTCCCGATTAATGGCTCTACAGAGC-TTCCCATTTA
69475027 TGGCTCGTAT
64 TGGCTCGTAT
* * *
69475037 GAGCTTCT--CAATTACGACTCTTATGAGCTTCCC-ATTACATGGCTC-ACATGAGCTTCCCATT
1 GAGCTTCTGATAATT--GGCTCTCATGAGCTTCCCGATTA-ATGGCTCTACA-GAGCTTCCCATT
* *
69475098 ATATGGCTCGAAA
62 -TATGGCTCGTAT
69475111 GAGCTTCCTGAT
1 GAGCTT-CTGAT
69475123 TACATGCTCG
Statistics
Matches: 132, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
71 4 0.03
72 12 0.09
73 27 0.20
74 79 0.60
75 10 0.08
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (73 bp):
GAGCTTCTGATAATTGGCTCTCATGAGCTTCCCGATTAATGGCTCTACAGAGCTTCCCATTTATG
GCTCGTAT
Found at i:69475131 original size:25 final size:26
Alignment explanation
Indices: 69475061--69475132 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 26
69475051 CGACTCTTAT
*
69475061 GAGCTTCCCATTACATGGCTC-ACAT
1 GAGCTTCCCATTACATGGCTCGACAA
*
69475086 GAGCTTCCCATTATATGGCTCGA-AA
1 GAGCTTCCCATTACATGGCTCGACAA
*
69475111 GAGCTTCCTGATTACAT-GCTCG
1 GAGCTTCC-CATTACATGGCTCG
69475133 TATGGGCATA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 34 0.83
26 7 0.17
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (26 bp):
GAGCTTCCCATTACATGGCTCGACAA
Found at i:69484927 original size:3 final size:3
Alignment explanation
Indices: 69484919--69484943 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
69484909 CAATCTCAAG
69484919 CTC CTC CTC CTC CTC CTC CTC CTC C
1 CTC CTC CTC CTC CTC CTC CTC CTC C
69484944 ACTGGTTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (3 bp):
CTC
Found at i:69501909 original size:108 final size:109
Alignment explanation
Indices: 69501722--69502020 Score: 396
Period size: 108 Copynumber: 2.8 Consensus size: 109
69501712 GAGATTTAAG
* * * *
69501722 AGGATATTTGACTATTTGGTCAAACG-G-GAAATCGAAACCCGGCACATTAGGGCACGTTTAT-T
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTT-TCT
*
69501784 TGAATTTCCAAACGCAAAATATTACCTTAC-TTCAAAATTAAAAA
65 CGAATTTCCAAACGCAAAATATTACCTTACTTTCAAAATTAAAAA
* *
69501828 AGGATATTTGGTTATTTGGTCGAACGAGAAAAATCGAAATCCAGCACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
** * * *
69501893 GAATTTCCAAACGCAAAATATCGCCTTACTTTGAAATTTTAAAA
66 GAATTTCCAAACGCAAAATATTACCTTACTTTCAAAATTAAAAA
* **
69501937 A-GATATTTAGCTATTTGGTCGAAC-A-AAAAATCGAAACCCAGCACATTAGAACACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
*
69501999 GAATTTTCAAACGCAAAATATT
66 GAATTTCCAAACGCAAAATATT
69502021 GACTTATTTA
Statistics
Matches: 170, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
106 77 0.45
107 3 0.02
108 78 0.46
109 12 0.07
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (109 bp):
AGGATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAATATTACCTTACTTTCAAAATTAAAAA
Found at i:69502093 original size:20 final size:20
Alignment explanation
Indices: 69502068--69502105 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
69502058 GTTAACATGC
69502068 ATAATG-GAATAATAAATATG
1 ATAATGTGAATAA-AAATATG
69502088 ATAATGTGAATAAAAATA
1 ATAATGTGAATAAAAATA
69502106 ATTTGAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (20 bp):
ATAATGTGAATAAAAATATG
Found at i:69502509 original size:9 final size:9
Alignment explanation
Indices: 69502464--69502537 Score: 60
Period size: 9 Copynumber: 7.8 Consensus size: 9
69502454 GTAAAAAATG
69502464 TATATAAATA
1 TATATAAA-A
69502474 TATATATAGATA
1 TATATA-A-A-A
*
69502486 TGTATATAAA
1 TATATA-AAA
69502496 T-TATAAAA
1 TATATAAAA
*
69502504 TATATAGAA
1 TATATAAAA
*
69502513 TATATAGAA
1 TATATAAAA
*
69502522 TATATAGAA
1 TATATAAAA
69502531 TATATAA
1 TATATAA
69502538 GTATGTATGT
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
8 4 0.07
9 34 0.59
10 8 0.14
11 2 0.03
12 10 0.17
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (9 bp):
TATATAAAA
Found at i:69503599 original size:25 final size:24
Alignment explanation
Indices: 69503551--69503600 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
69503541 TTATTGCTTG
*
69503551 CTTTTTTTTTTGAATCTTTGTTTT
1 CTTTTTTTTTTGAATATTTGTTTT
*
69503575 CTTTTTTTTTTGAATAATTTTTTTT
1 CTTTTTTTTTTGAAT-ATTTGTTTT
69503600 C
1 C
69503601 AAAAAAAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.12, C:0.08, G:0.06, T:0.74
Consensus pattern (24 bp):
CTTTTTTTTTTGAATATTTGTTTT
Found at i:69506309 original size:15 final size:15
Alignment explanation
Indices: 69506279--69506308 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
69506269 ATGTTTGAAA
69506279 TGTAAAATTATATTT
1 TGTAAAATTATATTT
69506294 TGTAAAA-TATATTT
1 TGTAAAATTATATTT
69506308 T
1 T
69506309 TTGAATTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (15 bp):
TGTAAAATTATATTT
Found at i:69506411 original size:28 final size:28
Alignment explanation
Indices: 69506380--69506438 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
69506370 AATGTGAAAT
*
69506380 AAAGAAAATCAAAAGGTCATTTTTAA-AG
1 AAAGAAAAT-AAAAGGACATTTTTAATAG
* * *
69506408 AAAGATAATTAAGGGACATTTTTAATAG
1 AAAGAAAATAAAAGGACATTTTTAATAG
69506436 AAA
1 AAA
69506439 TAAAGAAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 13 0.50
28 13 0.50
ACGTcount: A:0.53, C:0.05, G:0.15, T:0.27
Consensus pattern (28 bp):
AAAGAAAATAAAAGGACATTTTTAATAG
Found at i:69506795 original size:5 final size:5
Alignment explanation
Indices: 69506776--69506828 Score: 90
Period size: 5 Copynumber: 10.8 Consensus size: 5
69506766 TTGAAGTAGA
*
69506776 AGAAG AGGA- AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG
69506825 AGAA
1 AGAA
69506829 AAAAGAGTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
4 3 0.07
5 42 0.93
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:69514487 original size:27 final size:25
Alignment explanation
Indices: 69514457--69514525 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
69514447 CGTTCTGACC
69514457 CACAGCTCGTGTGAGCAGACCCATT-TT
1 CACAGCTCGTGTGAGCAGA--C-TTATT
* *
69514484 CACAGCTCATGTGAGCATACTTATT
1 CACAGCTCGTGTGAGCAGACTTATT
*
69514509 CATAGCTCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
69514526 TATATGTACA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.05
25 18 0.49
27 17 0.46
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (25 bp):
CACAGCTCGTGTGAGCAGACTTATT
Found at i:69515690 original size:15 final size:16
Alignment explanation
Indices: 69515670--69515699 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69515660 TGGTGCCTTG
69515670 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
69515685 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
69515700 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:69521910 original size:15 final size:16
Alignment explanation
Indices: 69521890--69521919 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69521880 TGGTGCGTTG
69521890 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
69521905 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
69521920 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:69551779 original size:29 final size:28
Alignment explanation
Indices: 69551747--69551819 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
69551737 AAAATATCTG
69551747 ATAATATGATCACCGGTACATAGTACCTA
1 ATAATAT-ATCACCGGTACATAGTACCTA
* * * *
69551776 ATAAAATAGTTATCGGTACATAGTATCTA
1 ATAATATA-TCACCGGTACATAGTACCTA
69551805 ATAAATATAATCACC
1 AT-AATAT-ATCACC
69551820 AACACATAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
28 1 0.03
29 25 0.74
30 7 0.21
31 1 0.03
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.30
Consensus pattern (28 bp):
ATAATATATCACCGGTACATAGTACCTA
Done.