Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 226 of 313
Found at i:69557971 original size:25 final size:25
Alignment explanation
Indices: 69557909--69557973 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
69557899 GTCATTAGGG
* *
69557909 TTACCGA-TTTCAGCTTGTATGAGC
1 TTACCGATTTTCAGCTCGCATGAGC
**
69557933 TTACCGATACTCAGCTCGCATGAGC
1 TTACCGATTTTCAGCTCGCATGAGC
*
69557958 TTACCGTTTTTCAGCT
1 TTACCGATTTTCAGCT
69557974 AGGAGGAGCT
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
24 7 0.21
25 26 0.79
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.35
Consensus pattern (25 bp):
TTACCGATTTTCAGCTCGCATGAGC
Found at i:69565558 original size:25 final size:24
Alignment explanation
Indices: 69565511--69565565 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
69565501 ATGTCATTAG
* *
69565511 GGTTACCGATTTCAGCTTATATGA
1 GGTTACCGATCTCAGCTCATATGA
*
69565535 GGTTACCGATACTCAGCTCGTATGA
1 GGTTACCGAT-CTCAGCTCATATGA
*
69565560 GCTTAC
1 GGTTAC
69565566 TATTATTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (24 bp):
GGTTACCGATCTCAGCTCATATGA
Found at i:69565575 original size:25 final size:25
Alignment explanation
Indices: 69565547--69565600 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
69565537 TTACCGATAC
* *
69565547 TCAGCTCGTATGAGCTTACTATTAT
1 TCAGCTCGAAGGAGCTTACTATTAT
*
69565572 TCAGCTCGAAGGAGCTTACTGTTAT
1 TCAGCTCGAAGGAGCTTACTATTAT
69565597 TCAG
1 TCAG
69565601 TGCAGATGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.35
Consensus pattern (25 bp):
TCAGCTCGAAGGAGCTTACTATTAT
Found at i:69579345 original size:30 final size:30
Alignment explanation
Indices: 69579309--69579366 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
69579299 TACTTTGGCT
*
69579309 AACTTGAAAGAATTACTCACCACCATAAAC
1 AACTTGAAAGAATCACTCACCACCATAAAC
*
69579339 AACTTGAAAGAATCACTCACCTCCATAA
1 AACTTGAAAGAATCACTCACCACCATAA
69579367 CATAAACATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.45, C:0.28, G:0.07, T:0.21
Consensus pattern (30 bp):
AACTTGAAAGAATCACTCACCACCATAAAC
Found at i:69586307 original size:40 final size:40
Alignment explanation
Indices: 69586248--69586441 Score: 237
Period size: 40 Copynumber: 4.8 Consensus size: 40
69586238 GAAACTACTA
**
69586248 TTGAATGCACATACGTGCCCCTGTTTATACTTCGGTACCC
1 TTGAATGCACATACGTGCCCCTGTTTGCACTTCGGTACCC
* *
69586288 TTGAATGCACATACATGCCCCTGTTTGCACTTCAGTACCC
1 TTGAATGCACATACGTGCCCCTGTTTGCACTTCGGTACCC
* *
69586328 CTGAATGCACATACGTGCCCCTGTTTGCACTTCGGTGCCC
1 TTGAATGCACATACGTGCCCCTGTTTGCACTTCGGTACCC
* * ** * **
69586368 CTGAATGCACATATC-TACCCCTGTTTTTACTTTGGTGTCC
1 TTGAATGCACATA-CGTGCCCCTGTTTGCACTTCGGTACCC
**
69586408 TTGAATGCACATTTGTGCCCCTGTTTGCACTTCG
1 TTGAATGCACATACGTGCCCCTGTTTGCACTTCG
69586442 ATTCCATTGA
Statistics
Matches: 132, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
40 131 0.99
41 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.34
Consensus pattern (40 bp):
TTGAATGCACATACGTGCCCCTGTTTGCACTTCGGTACCC
Found at i:69586328 original size:20 final size:20
Alignment explanation
Indices: 69586303--69586370 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
69586293 TGCACATACA
69586303 TGCCCCTGTTTGCACTTCAG
1 TGCCCCTGTTTGCACTTCAG
* ** *
69586323 TACCCCTGAATGCACAT-ACG
1 TGCCCCTGTTTGCACTTCA-G
*
69586343 TGCCCCTGTTTGCACTTCGG
1 TGCCCCTGTTTGCACTTCAG
69586363 TGCCCCTG
1 TGCCCCTG
69586371 AATGCACATA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
19 1 0.03
20 36 0.97
ACGTcount: A:0.13, C:0.37, G:0.21, T:0.29
Consensus pattern (20 bp):
TGCCCCTGTTTGCACTTCAG
Found at i:69586376 original size:20 final size:19
Alignment explanation
Indices: 69586289--69586377 Score: 70
Period size: 20 Copynumber: 4.5 Consensus size: 19
69586279 TCGGTACCCT
* *
69586289 TGAATGCACATACATGCCCC
1 TGAATGCAC-TTCGTGCCCC
** *
69586309 TGTTTGCACTTCAGTACCCC
1 TGAATGCACTTC-GTGCCCC
*
69586329 TGAATGCACATACGTGCCCC
1 TGAATGCAC-TTCGTGCCCC
**
69586349 TGTTTGCACTTCGGTGCCCC
1 TGAATGCACTTC-GTGCCCC
69586369 TGAATGCAC
1 TGAATGCAC
69586378 ATATCTACCC
Statistics
Matches: 52, Mismatches: 14, Indels: 6
0.72 0.19 0.08
Matches are distributed among these distances:
19 4 0.08
20 46 0.88
21 2 0.04
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.27
Consensus pattern (19 bp):
TGAATGCACTTCGTGCCCC
Found at i:69590645 original size:78 final size:80
Alignment explanation
Indices: 69590505--69590669 Score: 212
Period size: 78 Copynumber: 2.1 Consensus size: 80
69590495 CTTGAAAGAT
*
69590505 AATTGTTCAATCGATTTCTATTTGAAACAAGAAATTCAAAAAAAATCCTATTAAATGACAGGAAT
1 AATTGTTCAATAGATTTCTATTTGAAACAAGAAATTCAAAAAAAATCCTATTAAATGACAGGAAT
*
69590570 AAAATCCTAAAATAG
66 AAAATCCTAAAACAG
* * * * *
69590585 AATTGTTCAATAGATTTTTTGTTTGAAACAA-AAA-TC-GAACAAATCCTGTTAAATTG-CAGGA
1 AATTGTTCAATAGA-TTTCTATTTGAAACAAGAAATTCAAAAAAAATCCTATTAAA-TGACAGGA
*
69590646 ATAAAATCCTGAAACAG
64 ATAAAATCCTAAAACAG
69590663 AATTGTT
1 AATTGTT
69590670 TAGTTGAATT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 41 0.55
79 4 0.05
80 16 0.21
81 14 0.19
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (80 bp):
AATTGTTCAATAGATTTCTATTTGAAACAAGAAATTCAAAAAAAATCCTATTAAATGACAGGAAT
AAAATCCTAAAACAG
Found at i:69593061 original size:25 final size:23
Alignment explanation
Indices: 69593033--69593078 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
69593023 AAACAACTTC
69593033 TAAAGAAAACTCAAGAGAGAAATCT
1 TAAAGAAAACTCAA-AGA-AAATCT
69593058 TAAAGAAAACTCAAAGAAAAT
1 TAAAGAAAACTCAAAGAAAAT
69593079 TCTGCTCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 4 0.19
24 3 0.14
25 14 0.67
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.15
Consensus pattern (23 bp):
TAAAGAAAACTCAAAGAAAATCT
Found at i:69593073 original size:11 final size:11
Alignment explanation
Indices: 69593034--69593077 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
69593024 AACAACTTCT
69593034 AAAGAAAACTC
1 AAAGAAAACTC
*
69593045 AAGAGAGAAATCTT
1 AA-AGA-AAA-CTC
69593059 AAAGAAAACTC
1 AAAGAAAACTC
69593070 AAAGAAAA
1 AAAGAAAA
69593078 TTCTGCTCTC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 12 0.43
12 6 0.21
13 6 0.21
14 4 0.14
ACGTcount: A:0.64, C:0.11, G:0.14, T:0.11
Consensus pattern (11 bp):
AAAGAAAACTC
Found at i:69608992 original size:33 final size:33
Alignment explanation
Indices: 69608941--69609191 Score: 132
Period size: 33 Copynumber: 7.4 Consensus size: 33
69608931 CATATAAAGG
**
69608941 GGTTGCTGTGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * *
69608974 GGTCGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-T----GGT
69609017 GGTTGCTAAGTGCTGATTCCCC----CGA--GG-
1 GGTTGCTAAGTGCTGATTCCCCGATTC-ATTGGT
*
69609044 GGTTGCTAAGTGCTGATTCCCCTATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
69609077 GGTTGCTAAGTGCTGATTCCACCGCATCTGAAATATGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-AT-T--CAT-T---GGT
*
69609119 GGTTGCTAAGTGCTGATTCCCC----CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
**
69609146 GGTTGCTGTGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
69609179 GGTTGCTAAGTGC
1 GGTTGCTAAGTGC
69609192 GGAATCCATC
Statistics
Matches: 168, Mismatches: 17, Indels: 66
0.67 0.07 0.26
Matches are distributed among these distances:
27 42 0.25
28 4 0.02
30 1 0.01
31 3 0.02
32 4 0.02
33 49 0.29
34 5 0.03
35 4 0.02
36 1 0.01
37 2 0.01
38 4 0.02
39 2 0.01
41 2 0.01
42 24 0.14
43 21 0.12
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
Found at i:69609162 original size:102 final size:103
Alignment explanation
Indices: 69608937--69609191 Score: 422
Period size: 102 Copynumber: 2.5 Consensus size: 103
69608927 ATTGCATATA
* * *
69608937 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTCGCTAAGTGCTGATTCCACCGTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
* *
69609002 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATATGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* ** *
69609040 GAGGGGTTGCTAAGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
69609105 TGAAATATG-AAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATATGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
69609142 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGC
1 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGC
69609192 GGAATCCATC
Statistics
Matches: 139, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
102 74 0.53
103 65 0.47
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (103 bp):
AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
TGAAATATGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:69610870 original size:42 final size:42
Alignment explanation
Indices: 69610738--69611093 Score: 366
Period size: 42 Copynumber: 8.4 Consensus size: 42
69610728 ACGTCGCTAA
* *
69610738 CTTTTGCGGCGCTTACAGAAAAAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTA-TGAAAAAAA-GCCGCTAAAGATCATGTT
* * *
69610782 CTTTAGCGGCGCTAAGGAAATAAAAGCCACTAAAGATCATGTT
1 CTTTAGCGGCGCTTATGAAA-AAAAGCCGCTAAAGATCATGTT
*
69610825 CTTTAGCGGCGCTTATGAAAAAATA-CTGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTATGAAAAAA-AGCCGCTAAAGATCATGTT
* * *
69610867 CTTTAACGGCGCTTAGGAAAAAAAGCCGCTAAAGATCGTGTT
1 CTTTAGCGGCGCTTATGAAAAAAAGCCGCTAAAGATCATGTT
* * *
69610909 CTTTAGCGGCGCTT-TGAAAAAAATGCCGCTAAAGTTCGTGTA
1 CTTTAGCGGCGCTTATGAAAAAAA-GCCGCTAAAGATCATGTT
*
69610951 CTTTAGCGGCGCTT-TGAAAAAAACGCCGCTAAAGATCGTGTT
1 CTTTAGCGGCGCTTATGAAAAAAA-GCCGCTAAAGATCATGTT
* * *
69610993 CTTTAGCGGCGCTT-TGGAGGAAAACGCCGCTAAA-AGTAATGTT
1 CTTTAGCGGCGCTTAT-GA-AAAAAAGCCGCTAAAGA-TCATGTT
* * * ** *
69611036 CTATAGTGGCGCTTGTTCAAAAACGCCGCTAATAG-T-AGTGTT
1 CTTTAGCGGCGCTTATGAAAAAAAGCCGCTAA-AGATCA-TGTT
69611078 CTTTAGCGGCGCTTAT
1 CTTTAGCGGCGCTTAT
69611094 TTCACAAACG
Statistics
Matches: 270, Mismatches: 31, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
41 10 0.04
42 169 0.63
43 69 0.26
44 22 0.08
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (42 bp):
CTTTAGCGGCGCTTATGAAAAAAAGCCGCTAAAGATCATGTT
Found at i:69611565 original size:21 final size:21
Alignment explanation
Indices: 69611541--69611598 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
69611531 GCTTCTATCG
* *
69611541 CTGCTTCTGTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
69611562 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
69611583 CTGCTTCCCTCGCTGC
1 CTGCTTCTCTCGCTGC
69611599 CGCCCCTACT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.02, C:0.41, G:0.22, T:0.34
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:69617150 original size:9 final size:9
Alignment explanation
Indices: 69617115--69617645 Score: 440
Period size: 9 Copynumber: 59.0 Consensus size: 9
69617105 TTAAACAATA
69617115 ATGTAAGTT
1 ATGTAAGTT
*
69617124 A-GGAAGGTT
1 ATGTAA-GTT
69617133 ATGT-A-TT
1 ATGTAAGTT
69617140 ATGTAAGTT
1 ATGTAAGTT
*
69617149 ATGTAAATT
1 ATGTAAGTT
69617158 ATGTAAGTT
1 ATGTAAGTT
*
69617167 ATGTAATTT
1 ATGTAAGTT
69617176 ATGTAAGTT
1 ATGTAAGTT
69617185 ATGTAAGTT
1 ATGTAAGTT
69617194 ATGTAAGTT
1 ATGTAAGTT
* *
69617203 ATTTAATTT
1 ATGTAAGTT
69617212 ATGTAAGTT
1 ATGTAAGTT
*
69617221 ATGTAAGAT
1 ATGTAAGTT
69617230 ATGTAAGTT
1 ATGTAAGTT
69617239 ATGTAAGTT
1 ATGTAAGTT
*
69617248 ATTTAAGTT
1 ATGTAAGTT
69617257 ATGTAAGTT
1 ATGTAAGTT
69617266 A--TAAGTT
1 ATGTAAGTT
*
69617273 ATTTAAGTT
1 ATGTAAGTT
69617282 ATGTAAGTT
1 ATGTAAGTT
69617291 ATGTAAGTT
1 ATGTAAGTT
69617300 ATGTAAGTT
1 ATGTAAGTT
*
69617309 ATTTAA-TT
1 ATGTAAGTT
69617317 AATGTAAGTT
1 -ATGTAAGTT
69617327 ATGTAAGTT
1 ATGTAAGTT
* *
69617336 ATATAATTT
1 ATGTAAGTT
69617345 ATGTAAGCAATT
1 ATGTAAG---TT
* *
69617357 -TAGAAAAAATT
1 AT-G--TAAGTT
69617368 ATGTAAGTT
1 ATGTAAGTT
69617377 ATGTACTAAGTT
1 ATG---TAAGTT
69617389 ATGT-A-TT
1 ATGTAAGTT
*
69617396 ATGTAAATT
1 ATGTAAGTT
69617405 ATGTACTAAGTT
1 ATG---TAAGTT
69617417 ATGT-A-TT
1 ATGTAAGTT
* *
69617424 ATGTAAATA
1 ATGTAAGTT
* *
69617433 ATTTAAGTA
1 ATGTAAGTT
*
69617442 ATGTATGTT
1 ATGTAAGTT
69617451 ATGTAAG-T
1 ATGTAAGTT
* *
69617459 AAGT-TGTT
1 ATGTAAGTT
69617467 ATGTAAGTT
1 ATGTAAGTT
* *
69617476 TTG-CA-TT
1 ATGTAAGTT
69617483 ATGTAAGTT
1 ATGTAAGTT
69617492 ATGTAAGTT
1 ATGTAAGTT
** *
69617501 ATCAAAGTA
1 ATGTAAGTT
*
69617510 ATGTATGTT
1 ATGTAAGTT
69617519 ATGTAAGTTGTT
1 ATGTAA---GTT
69617531 ATGTAAGTT
1 ATGTAAGTT
* *
69617540 TTG-CA-TT
1 ATGTAAGTT
69617547 ATGTAAGTT
1 ATGTAAGTT
69617556 ATGTAAGTT
1 ATGTAAGTT
69617565 ATGTAAGTT
1 ATGTAAGTT
69617574 AAATGT-A-TT
1 --ATGTAAGTT
69617583 ATG-AAGGTT
1 ATGTAA-GTT
69617592 ATGTAAGTT
1 ATGTAAGTT
*
69617601 GTGTAAGTT
1 ATGTAAGTT
69617610 ATGTAAGTT
1 ATGTAAGTT
69617619 ATGTAAGTT
1 ATGTAAGTT
69617628 AAATGT-A-TT
1 --ATGTAAGTT
69617637 ATGTAAGTT
1 ATGTAAGTT
69617646 TATATAAAAA
Statistics
Matches: 423, Mismatches: 55, Indels: 88
0.75 0.10 0.16
Matches are distributed among these distances:
7 42 0.10
8 23 0.05
9 307 0.73
10 7 0.02
11 12 0.03
12 30 0.07
14 2 0.00
ACGTcount: A:0.35, C:0.01, G:0.19, T:0.45
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:69617406 original size:28 final size:28
Alignment explanation
Indices: 69617365--69617431 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
69617355 TTTAGAAAAA
*
69617365 ATTATGTAAGTTATGTACTAAGTTATGT
1 ATTATGTAAATTATGTACTAAGTTATGT
69617393 ATTATGTAAATTATGTACTAAGTTATGT
1 ATTATGTAAATTATGTACTAAGTTATGT
69617421 ATTATGTAAAT
1 ATTATGTAAAT
69617432 AATTTAAGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (28 bp):
ATTATGTAAATTATGTACTAAGTTATGT
Found at i:69617474 original size:12 final size:12
Alignment explanation
Indices: 69617457--69617539 Score: 55
Period size: 12 Copynumber: 6.6 Consensus size: 12
69617447 TGTTATGTAA
69617457 GTAAGTTGTTAT
1 GTAAGTTGTTAT
69617469 GTAAGTTTTGCATTAT
1 GTAAG--TTG--TTAT
69617485 GTAA---GTTAT
1 GTAAGTTGTTAT
* * *
69617494 GTAAGTTATCAAA
1 GTAAGTTGT-TAT
69617507 GTAATGTATGTTAT
1 GTAA-GT-TGTTAT
69617521 GTAAGTTGTTAT
1 GTAAGTTGTTAT
69617533 GTAAGTT
1 GTAAGTT
69617540 TTGCATTATG
Statistics
Matches: 55, Mismatches: 6, Indels: 20
0.68 0.07 0.25
Matches are distributed among these distances:
9 8 0.15
11 1 0.02
12 19 0.35
13 7 0.13
14 10 0.18
15 2 0.04
16 8 0.15
ACGTcount: A:0.30, C:0.02, G:0.22, T:0.46
Consensus pattern (12 bp):
GTAAGTTGTTAT
Found at i:69617550 original size:64 final size:64
Alignment explanation
Indices: 69617437--69617628 Score: 241
Period size: 64 Copynumber: 3.0 Consensus size: 64
69617427 TAAATAATTT
69617437 AAGTAATGTATGTTATGTAAGTAAGTTGTTATGTAAGTTTTGCATTATGTAAGTTATGTAAGTTA
1 AAGTAATGTATGTTA--T--GTAAGTTGTTATGTAAGTTTTGCATTATGTAAGTTATGTAAGTTA
69617502 TCA
62 TCA
**
69617505 AAGTAATGTATGTTATGTAAGTTGTTATGTAAGTTTTGCATTATGTAAGTTATGTAAGTTATGT
1 AAGTAATGTATGTTATGTAAGTTGTTATGTAAGTTTTGCATTATGTAAGTTATGTAAGTTATCA
* *
69617569 AAGTTAAATGTA--TTATG-AAG--GTTATGTAAGTTGTGTAAGTTATGTAAGTTATGTAAGTTA
1 AAG-T-AATGTATGTTATGTAAGTTGTTATGTAAGTTTTG-CA-TTATGTAAGTTATGTAAGTTA
69617629 AATGTATTAT
Statistics
Matches: 116, Mismatches: 4, Indels: 13
0.87 0.03 0.10
Matches are distributed among these distances:
61 14 0.12
62 1 0.01
63 24 0.21
64 54 0.47
65 1 0.01
66 7 0.06
68 15 0.13
ACGTcount: A:0.32, C:0.02, G:0.22, T:0.44
Consensus pattern (64 bp):
AAGTAATGTATGTTATGTAAGTTGTTATGTAAGTTTTGCATTATGTAAGTTATGTAAGTTATCA
Found at i:69617674 original size:37 final size:37
Alignment explanation
Indices: 69617630--69617719 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
69617620 TGTAAGTTAA
69617630 ATGTATTATGTAAGTTTATATAAAAAAATTAT-AAGTT
1 ATGTATTATGTAAGTTTATAT-AAAAAATTATAAAGTT
*
69617667 ATGTATTATGTAAGTTTATATAAAAAATTTTAAAGTT
1 ATGTATTATGTAAGTTTATATAAAAAATTATAAAGTT
69617704 ATGTATTATGTAAGTT
1 ATGTATTATGTAAGTT
69617720 GTAATGTATT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 9 0.18
37 42 0.82
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (37 bp):
ATGTATTATGTAAGTTTATATAAAAAATTATAAAGTT
Found at i:69617805 original size:63 final size:63
Alignment explanation
Indices: 69617737--69617860 Score: 230
Period size: 63 Copynumber: 2.0 Consensus size: 63
69617727 ATTATGTAAG
*
69617737 TTTACATATATGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAAAT
1 TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAAAT
*
69617800 TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAA
1 TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAA
69617861 GTAATAAATT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.43
Consensus pattern (63 bp):
TTTACATATAAGTAAACTTACTTAAATTTTAGTAAGTAATGTATTTAAGTAACATACTTAAAT
Found at i:69617850 original size:13 final size:13
Alignment explanation
Indices: 69617832--69617883 Score: 61
Period size: 13 Copynumber: 4.0 Consensus size: 13
69617822 TAAATTTTAG
*
69617832 TAAGTAATGTATT
1 TAAGTAATATATT
*
69617845 TAAGTAACATATT
1 TAAGTAATATATT
*
69617858 TAAGTAATAAATT
1 TAAGTAATATATT
69617871 TAA-TATATATATT
1 TAAGTA-ATATATT
69617884 AGTAATAAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
12 2 0.06
13 31 0.94
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:69619602 original size:11 final size:10
Alignment explanation
Indices: 69619568--69619598 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
69619558 GCAAAGTTAA
69619568 ATTAAAAAAT
1 ATTAAAAAAT
69619578 ATTAAAAAGAT
1 ATTAAAAA-AT
69619589 ATTAAAAAAT
1 ATTAAAAAAT
69619599 TATTTTGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (10 bp):
ATTAAAAAAT
Found at i:69620643 original size:147 final size:147
Alignment explanation
Indices: 69620426--69620762 Score: 374
Period size: 147 Copynumber: 2.3 Consensus size: 147
69620416 CGGCCTCGTA
* * * *
69620426 TCGATAAATGTTAAAACATTTTTACGGCGTTTTAATTAAAGCGCCACTAACTATAAATCAAAACA
1 TCGATAAATGTTAAAACAATTTTGCGGCGTTTTAAGTAAAGCGCCACTAAATATAAATCAAAACA
* * * * *
69620491 CAGTCGCTTCATCAACACTTACCTCAAACCCGTGGTGTTTTAAAAAAATCGCCACTAATAACATT
66 CAGTCGCTTCACCAACACTTAACTCAAACCCGTGGCGTTTCAAAAAAAGCGCCACTAATAACATT
* * *
69620556 TAAAAAACGGCAACGTT
131 GAAAAAACGACAACATT
* * *
69620573 TCTATAAATGTTAGAACAATGTTGCGGCGTTTTAAGTAAAGCGCCACTAAATATAAGATC-AAAC
1 TCGATAAATGTTAAAACAATTTTGCGGCGTTTTAAGTAAAGCGCCACTAAATATAA-ATCAAAAC
* * * * ** * *
69620637 GA-AGTCGTTTCCCCAACATTTAACTCAAGCTTGTGGCGTTTCCAAAAAAGCGCCACTAATACCA
65 -ACAGTCGCTTCACCAACACTTAACTCAAACCCGTGGCGTTTCAAAAAAAGCGCCACTAATAACA
* *
69620701 TTGACAAAATGACAACATT
129 TTGAAAAAACGACAACATT
** *
69620720 TCGATAAA-CATAAATACAATTTTGCGGCGTTTTATGTAAAGCG
1 TCGATAAATGTTAAA-ACAATTTTGCGGCGTTTTAAGTAAAGCG
69620763 ACAGTAATAG
Statistics
Matches: 156, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
146 3 0.02
147 149 0.96
148 4 0.03
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.28
Consensus pattern (147 bp):
TCGATAAATGTTAAAACAATTTTGCGGCGTTTTAAGTAAAGCGCCACTAAATATAAATCAAAACA
CAGTCGCTTCACCAACACTTAACTCAAACCCGTGGCGTTTCAAAAAAAGCGCCACTAATAACATT
GAAAAAACGACAACATT
Found at i:69625108 original size:15 final size:15
Alignment explanation
Indices: 69625084--69625114 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69625074 GAATTTTTTG
*
69625084 ATATTTTAATTTCAT
1 ATATTATAATTTCAT
69625099 ATATTATAATTTCAT
1 ATATTATAATTTCAT
69625114 A
1 A
69625115 CATAAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (15 bp):
ATATTATAATTTCAT
Found at i:69634615 original size:31 final size:31
Alignment explanation
Indices: 69634577--69634650 Score: 148
Period size: 31 Copynumber: 2.4 Consensus size: 31
69634567 AAAGTGACTT
69634577 AGAGTGACTAAAATTGACAACTTATCTAATA
1 AGAGTGACTAAAATTGACAACTTATCTAATA
69634608 AGAGTGACTAAAATTGACAACTTATCTAATA
1 AGAGTGACTAAAATTGACAACTTATCTAATA
69634639 AGAGTGACTAAA
1 AGAGTGACTAAA
69634651 TAACAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (31 bp):
AGAGTGACTAAAATTGACAACTTATCTAATA
Found at i:69638924 original size:27 final size:27
Alignment explanation
Indices: 69638894--69639011 Score: 91
Period size: 25 Copynumber: 4.5 Consensus size: 27
69638884 TCTGACCCAT
*
69638894 AGCTCGTCTGAGCAGACCCATTTTCAC
1 AGCTCGTGTGAGCAGACCCATTTTCAC
** * * *
69638921 AGCTTATGTGAGC--ACGCATATTCAT
1 AGCTCGTGTGAGCAGACCCATTTTCAC
* *
69638946 ATCTCGTGTGAGTAGACCCATTTTCAC
1 AGCTCGTGTGAGCAGACCCATTTTCAC
* * * * *
69638973 AGCTCATGTAAGC--ACGCATATTCAT
1 AGCTCGTGTGAGCAGACCCATTTTCAC
69638998 AGCTCGTGTGAGCA
1 AGCTCGTGTGAGCA
69639012 TATATGTACA
Statistics
Matches: 66, Mismatches: 22, Indels: 7
0.69 0.23 0.07
Matches are distributed among these distances:
25 38 0.58
27 28 0.42
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (27 bp):
AGCTCGTGTGAGCAGACCCATTTTCAC
Found at i:69638974 original size:52 final size:52
Alignment explanation
Indices: 69638891--69639011 Score: 197
Period size: 52 Copynumber: 2.3 Consensus size: 52
69638881 CATTCTGACC
* * *
69638891 CATAGCTCGTCTGAGCAGACCCATTTTCACAGCTTATGTGAGCACGCATATT
1 CATAGCTCGTGTGAGCAGACCCATTTTCACAGCTCATGTAAGCACGCATATT
* *
69638943 CATATCTCGTGTGAGTAGACCCATTTTCACAGCTCATGTAAGCACGCATATT
1 CATAGCTCGTGTGAGCAGACCCATTTTCACAGCTCATGTAAGCACGCATATT
69638995 CATAGCTCGTGTGAGCA
1 CATAGCTCGTGTGAGCA
69639012 TATATGTACA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (52 bp):
CATAGCTCGTGTGAGCAGACCCATTTTCACAGCTCATGTAAGCACGCATATT
Found at i:69639704 original size:20 final size:20
Alignment explanation
Indices: 69639657--69639704 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
69639647 AAGCTAAAGA
*
69639657 AAGAAAATGCAATGGAAAGT
1 AAGAAAATGCAATGGAAAAT
69639677 AATG-AAATGCAAAT-GAAAAT
1 AA-GAAAATGC-AATGGAAAAT
69639697 AAGAAAAT
1 AAGAAAAT
69639705 TTGAAAGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
19 1 0.04
20 19 0.79
21 4 0.17
ACGTcount: A:0.60, C:0.04, G:0.19, T:0.17
Consensus pattern (20 bp):
AAGAAAATGCAATGGAAAAT
Found at i:69645629 original size:50 final size:50
Alignment explanation
Indices: 69645563--69645853 Score: 282
Period size: 50 Copynumber: 5.8 Consensus size: 50
69645553 ATTTGGGTAA
* * * *
69645563 AGAGATCCCATGTAAGACCATGTCTGGGACATGACGTTGGCTCCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* ** *
69645613 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* * * *
69645663 ACAGGTCCCATGTAAGACCATGTTTGGGACATCGCATTGGCGCCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * * *
69645713 AGAGGTCCCCGGTAAGACCGTGTCTGGGACATGGCATAGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * * *
69645763 AGAACTCTCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACAAGA--
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA--CCAAGATG
** * * *
69645813 A-ACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
69645854 TGTTATATTC
Statistics
Matches: 195, Mismatches: 44, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
49 32 0.16
50 160 0.82
52 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
Found at i:69647645 original size:56 final size:53
Alignment explanation
Indices: 69647554--69647807 Score: 295
Period size: 56 Copynumber: 4.8 Consensus size: 53
69647544 ATTTGGGTAA
*
69647554 AGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA-C-TTGAGA-TATG
69647610 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA-C-TTGAGA-TATG
* *
69647666 AGAGGTCCCATGTAAGACCATGTTTGGGACATGACATTGGCAC-CGAG--ATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACTTGAGATATG
* * * * *
69647716 AGAAGTCTCATGTAAGACCATGTCTGGGACATGGCATAGGCACCT---ATATG
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACTTGAGATATG
** * * *
69647766 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA
69647808 GTACAAGAAA
Statistics
Matches: 181, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
50 81 0.45
53 3 0.02
55 1 0.01
56 96 0.53
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (53 bp):
AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACTTGAGATATG
Found at i:69647855 original size:49 final size:50
Alignment explanation
Indices: 69647559--69647856 Score: 231
Period size: 56 Copynumber: 5.7 Consensus size: 50
69647549 GGTAAAGAGA
* * * **
69647559 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C-CT-ACA--A-GAGAAC
* * * **
69647615 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C-CT-ACA--A-GAGAAC
* * * * * *
69647671 TCCCATGTAAGACCATGTTTGGGACATGACATTGGCACCGAGATGAGAAG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTACAAGAGAAC
* * * *
69647721 TCTCATGTAAGACCATGTCTGGGACATGGCATAGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTACAAGAGAAC
* * *
69647771 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTACAAGAGAAC
* * *
69647819 ATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
69647857 TGTTATATTC
Statistics
Matches: 217, Mismatches: 24, Indels: 9
0.87 0.10 0.04
Matches are distributed among these distances:
48 3 0.01
49 37 0.17
50 81 0.37
53 3 0.01
55 1 0.00
56 92 0.42
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTACAAGAGAAC
Found at i:69653283 original size:13 final size:13
Alignment explanation
Indices: 69653267--69653302 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
69653257 ATGATTTCAT
69653267 GAAAATTTCGTTC
1 GAAAATTTCGTTC
69653280 GAAAATTTCGTTC
1 GAAAATTTCGTTC
69653293 GAAAATTTCG
1 GAAAATTTCG
69653303 ACGTTTGGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (13 bp):
GAAAATTTCGTTC
Found at i:69665780 original size:19 final size:19
Alignment explanation
Indices: 69665758--69665795 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
69665748 TCAATCATCC
69665758 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
69665777 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
69665796 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:69668851 original size:40 final size:40
Alignment explanation
Indices: 69668790--69668961 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
69668780 TCTTCGGAAT
* * *
69668790 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATATCAACAAGCACAAATGCCTTCGGGTC
* * *
69668829 TTAACCCGGGTATAGCAACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACAAGCACAAATGCCTTCGGGTC
**
69668869 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACAAGCACAAATGCCTTCGGGTC
* * * *
69668909 TTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCAACAAGCACAAATGCCTTCGGGTC
69668949 TTAGCCCGGATAT
1 TTAGCCCGGATAT
69668962 CATTCAAATG
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 4 0.03
40 108 0.93
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATATCAACAAGCACAAATGCCTTCGGGTC
Found at i:69671737 original size:27 final size:26
Alignment explanation
Indices: 69671705--69671912 Score: 281
Period size: 27 Copynumber: 7.8 Consensus size: 26
69671695 TCAATTCCTA
*
69671705 GGGGTATTTCAGTCATTTTACCCTTC
1 GGGGTATTTCGGTCATTTTACCCTTC
* *
69671731 GGAGGTATTTCGATCATTTTATCCTTC
1 GG-GGTATTTCGGTCATTTTACCCTTC
*
69671758 GGGGGTATTTTGGTCATTTTACCCTTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
* *
69671785 AGGGGTGTTTCGGTCAATTTACCCTTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
* *
69671812 AGGGGTATTTCGGCCATTTTACCCCTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
*
69671839 GGGGTATTTCGGTCATTTTACCATTC
1 GGGGTATTTCGGTCATTTTACCCTTC
69671865 GGGGGTATTTCGGTCATTTTACCCTTC
1 -GGGGTATTTCGGTCATTTTACCCTTC
69671892 GAGGGTATTTCGGTCATTTTA
1 G-GGGTATTTCGGTCATTTTA
69671913 GGCCCATTAC
Statistics
Matches: 160, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
26 26 0.16
27 132 0.82
28 2 0.01
ACGTcount: A:0.15, C:0.21, G:0.24, T:0.41
Consensus pattern (26 bp):
GGGGTATTTCGGTCATTTTACCCTTC
Found at i:69671877 original size:80 final size:80
Alignment explanation
Indices: 69671704--69671912 Score: 294
Period size: 80 Copynumber: 2.6 Consensus size: 80
69671694 TTCAATTCCT
* * * * *
69671704 AGGGGTATTTCAGTCATTTTACCCTTCGGAGGTATTTCGATCATTTTATCCTTCGGGGGTATTTT
1 AGGGGTATTTCGGTCATTTTACCCTTCGG-GGTATTTCGGTCATTTTACCCCTCGGGGGTATTTC
*
69671769 GGTCATTTTACCCTTC
65 GGTCATTTTACCATTC
* * *
69671785 AGGGGTGTTTCGGTCAATTTACCCTTCAGGGGTATTTCGGCCATTTTACCCCTC-GGGGTATTTC
1 AGGGGTATTTCGGTCATTTTACCCTTC-GGGGTATTTCGGTCATTTTACCCCTCGGGGGTATTTC
69671849 GGTCATTTTACCATTC
65 GGTCATTTTACCATTC
*
69671865 GGGGGTATTTCGGTCATTTTACCCTTCGAGGGTATTTCGGTCATTTTA
1 AGGGGTATTTCGGTCATTTTACCCTTCG-GGGTATTTCGGTCATTTTA
69671913 GGCCCATTAC
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.01
80 66 0.58
81 44 0.39
82 2 0.02
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (80 bp):
AGGGGTATTTCGGTCATTTTACCCTTCGGGGTATTTCGGTCATTTTACCCCTCGGGGGTATTTCG
GTCATTTTACCATTC
Found at i:69686950 original size:17 final size:17
Alignment explanation
Indices: 69686928--69686977 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
69686918 TTATTTCTTG
69686928 TTTTCAGTTTTAGTTTA
1 TTTTCAGTTTTAGTTTA
* *
69686945 TTTTCAGGTTTTTATTTTG
1 TTTTCA-G-TTTTAGTTTA
69686964 TTTTC-G-TTTAGTTT
1 TTTTCAGTTTTAGTTT
69686978 GCTTAAGGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 7 0.25
17 7 0.25
18 1 0.04
19 13 0.46
ACGTcount: A:0.12, C:0.06, G:0.14, T:0.68
Consensus pattern (17 bp):
TTTTCAGTTTTAGTTTA
Found at i:69688243 original size:19 final size:19
Alignment explanation
Indices: 69688219--69688257 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
69688209 ATTTTAATTT
69688219 GATTTT-AAAGATGTTTAAA
1 GATTTTCAAAGA-GTTTAAA
*
69688238 GATTTTCTAAGAGTTTAAA
1 GATTTTCAAAGAGTTTAAA
69688257 G
1 G
69688258 TGGATATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (19 bp):
GATTTTCAAAGAGTTTAAA
Found at i:69690968 original size:13 final size:11
Alignment explanation
Indices: 69690932--69690972 Score: 64
Period size: 11 Copynumber: 3.5 Consensus size: 11
69690922 TCACAAAATT
69690932 ATTTCGTAAAA
1 ATTTCGTAAAA
69690943 ATTTCGTAAAA
1 ATTTCGTAAAA
69690954 ATTTCGTTCAAAA
1 ATTTCG-T-AAAA
69690967 ATTTCG
1 ATTTCG
69690973 ACATTTGGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 17 0.61
12 1 0.04
13 10 0.36
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (11 bp):
ATTTCGTAAAA
Found at i:69696304 original size:43 final size:43
Alignment explanation
Indices: 69696256--69696358 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
69696246 TTGGTTTTCA
69696256 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
69696299 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
69696342 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
69696359 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:69696375 original size:29 final size:30
Alignment explanation
Indices: 69696340--69696413 Score: 100
Period size: 29 Copynumber: 2.5 Consensus size: 30
69696330 GTTGTGAGAT
*
69696340 TGGCACTAAGTGTGCGG-GCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGGAG-TTGAAAGTACA
*
69696369 TGGCACTAAGTGTG-GGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGGAGTTGAAAGTACA
69696398 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69696414 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 7 0.17
29 32 0.80
30 1 0.03
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.26
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGGAGTTGAAAGTACA
Found at i:69696814 original size:40 final size:39
Alignment explanation
Indices: 69696770--69696906 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 39
69696760 CATATCCTGA
* *
69696770 CTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGG
1 CTAAG-TCCGAAGAGCATTCGTGCGAGTGA-TAAATCCGGG
* * **
69696810 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
1 CTAAGT-CCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
** * *
69696850 CTAAGTTCCGAAGAGCATTCGTGCTTGTGATATATCCGTG
1 CTAAG-TCCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
*
69696890 CTAAATCCCGAAGAGCA
1 CTAAGT-CCGAAGAGCA
69696907 ATCATGCTGG
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
39 2 0.02
40 67 0.82
41 13 0.16
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
CTAAGTCCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
Found at i:69696860 original size:80 final size:81
Alignment explanation
Indices: 69696724--69696920 Score: 204
Period size: 80 Copynumber: 2.5 Consensus size: 81
69696714 TCGAATGATG
** *
69696724 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCTGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
69696786 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** * *
69696804 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
** *
69696868 TCGTGCTTGTGATATA
66 TCGTGCGAGTGATAAA
* * * *
69696884 TCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
69696921 GTGTATTCGG
Statistics
Matches: 97, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
80 72 0.74
81 19 0.20
82 6 0.06
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:69701932 original size:37 final size:37
Alignment explanation
Indices: 69701876--69701954 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
69701866 CCGAGCTCTA
* * *
69701876 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
69701913 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
69701950 AAGAC
1 AAGAC
69701955 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:69702996 original size:150 final size:150
Alignment explanation
Indices: 69702725--69703016 Score: 548
Period size: 150 Copynumber: 1.9 Consensus size: 150
69702715 AGTAGGATTG
* *
69702725 GAATTAAATAATGAATAAATTATGTAAATGAACCTTGATGAATCTGTTTTCATAGGAAAGTAACA
1 GAATTAAATAATGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACA
69702790 AAACGATCATATAGACAGTATGTTAAGAGATATTTAGGTTCTCGTGAGACAGGGCCAGAACGGTT
66 AAACGATCATATAGACAGTATGTTAAGAGATATTTAGGTTCTCGTGAGACAGGGCCAGAACGGTT
69702855 TCTGGATTCCCTATTTCGAT
131 TCTGGATTCCCTATTTCGAT
*
69702875 GAATTAAATAATGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACG
1 GAATTAAATAATGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACA
*
69702940 AAACGATCATATGGACAGTATGTTAAGAGATATTTAGGTTCTCGTGAGACAGGGCCAGAACGGTT
66 AAACGATCATATAGACAGTATGTTAAGAGATATTTAGGTTCTCGTGAGACAGGGCCAGAACGGTT
69703005 TCTGGATTCCCT
131 TCTGGATTCCCT
69703017 GTTCCGACTT
Statistics
Matches: 138, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 138 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (150 bp):
GAATTAAATAATGAATAAATTATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACA
AAACGATCATATAGACAGTATGTTAAGAGATATTTAGGTTCTCGTGAGACAGGGCCAGAACGGTT
TCTGGATTCCCTATTTCGAT
Found at i:69703072 original size:31 final size:31
Alignment explanation
Indices: 69703034--69703099 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
69703024 CTTTGGAAAT
*
69703034 TCATTATAAATTAACCAGAGATAATTAGGAG
1 TCATTATAAATTAACCAGAGATAATTAGAAG
69703065 TCATTATAAATTAACCAGAGATAATTAGAAG
1 TCATTATAAATTAACCAGAGATAATTAGAAG
69703096 TCAT
1 TCAT
69703100 GCCATATATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (31 bp):
TCATTATAAATTAACCAGAGATAATTAGAAG
Found at i:69703419 original size:67 final size:67
Alignment explanation
Indices: 69703309--69703441 Score: 239
Period size: 67 Copynumber: 2.0 Consensus size: 67
69703299 GCATATGAGT
69703309 CTAGTTTCAGGAAAAATTTACAGAACTGGATTTCGAGTATCAGAACTCAAGATATGATTTTTAAA
1 CTAGTTTCAGGAAAAATTTACAGAACTGGATTTCGAGTATCAGAACTCAAGATATGATTTTTAAA
69703374 GA
66 GA
* * *
69703376 CTAGTTTCAGGGAAAATTTACGGAACTGGATTTCGAGTTTCAGAACTCAAGATATGATTTTTAAA
1 CTAGTTTCAGGAAAAATTTACAGAACTGGATTTCGAGTATCAGAACTCAAGATATGATTTTTAAA
69703441 G
66 G
69703442 CGACTAGTAC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (67 bp):
CTAGTTTCAGGAAAAATTTACAGAACTGGATTTCGAGTATCAGAACTCAAGATATGATTTTTAAA
GA
Found at i:69712528 original size:21 final size:21
Alignment explanation
Indices: 69712503--69712580 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
69712493 ATCTTCAAGG
69712503 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
69712524 ATATGCAATCTTGGATATG--
1 ATATGCAATCTTAGATATGAT
69712543 ATATGCAATCTTGAAAGATATGAT
1 ATATGCAATCTT---AGATATGAT
* *
69712567 -TTTGTAATCTTAGA
1 ATATGCAATCTTAGA
69712581 GATTTAATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
19 12 0.25
20 3 0.06
21 18 0.38
22 6 0.12
23 9 0.19
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:69715105 original size:31 final size:31
Alignment explanation
Indices: 69715062--69715124 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
69715052 CTGTTGCCCA
* *
69715062 AGGATTCAAGATGGCAAAGATTATTCGAGAG
1 AGGACTCAAGATGACAAAGATTATTCGAGAG
69715093 AGGACTCAAGATGACAAAGATTATTCGAGAG
1 AGGACTCAAGATGACAAAGATTATTCGAGAG
69715124 A
1 A
69715125 CGCTGAACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.41, C:0.11, G:0.27, T:0.21
Consensus pattern (31 bp):
AGGACTCAAGATGACAAAGATTATTCGAGAG
Found at i:69719648 original size:44 final size:43
Alignment explanation
Indices: 69719600--69720183 Score: 115
Period size: 44 Copynumber: 13.3 Consensus size: 43
69719590 AGACACCAGC
69719600 CTTGCCTCCATGGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
1 CTTGCCTCC-TGGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
* * * * * * * *
69719644 CTTGCCTTCCTGCATCGACAGCGAAGCAAAT-C-GAAGACACCAG-C
1 CTTGCC-TCCTGGATTG-CAGCGGAGC--ATGCTAAAAATAGCAGAT
* * *
69719688 CTTGTCTCCCTGGGTTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCT-CCTGGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
* ** * * * * * * * *
69719732 CTTGCCTTCCTGCACCGACAGTGAAGCA-GATCGAATACACCAG-C
1 CTTGCC-TCCTGGATTG-CAGCGGAGCATGCT-AAAAATAGCAGAT
*
69719776 CTTGCCTCCCTAGG-TTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCT-CCT-GGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
* ** * * * * * * * *
69719820 CTTGCCTTCCTGCACCGACAGTGAAGCA-GATCGAATACACCAG-C
1 CTTGCC-TCCTGGATTG-CAGCGGAGCATGCT-AAAAATAGCAGAT
*
69719864 CTTGCCTCCCTAGG-TTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCT-CCT-GGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
* ** * * * * * * * *
69719908 CTTGCCTTCCTGCACCGACAGTGAAGCA-GATCGAATACACCAG-C
1 CTTGCC-TCCTGGATTG-CAGCGGAGCATGCT-AAAAATAGCAGAT
*
69719952 CTTGCCTCCCTAGG-TTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCT-CCT-GGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
* ** * * * * * * * *
69719996 CTTGCCTTCCTGCACCGACAGTGAAGCA-GATCGAATACACCAG-C
1 CTTGCC-TCCTGGATTG-CAGCGGAGCATGCT-AAAAATAGCAGAT
*
69720040 CTTGCCTCCCTAGG-TTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCT-CCT-GGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
* ** * * * * * * * *
69720084 CTTGCCTTCCTGCACCGACAGTGAAGCA-GATCGAATACACCAG-C
1 CTTGCC-TCCTGGATTG-CAGCGGAGCATGCT-AAAAATAGCAGAT
*
69720128 CTTGCCTCCCTAGG-TTGCAGCGGAGCAGGCTAAAAATAGCAGAT
1 CTTGCCT-CCT-GGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
69720172 CTTGCCTTCCTG
1 CTTGCC-TCCTG
69720184 CACTGACAAC
Statistics
Matches: 361, Mismatches: 131, Indels: 97
0.61 0.22 0.16
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 101 0.28
44 151 0.42
45 104 0.29
46 1 0.00
47 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (43 bp):
CTTGCCTCCTGGATTGCAGCGGAGCATGCTAAAAATAGCAGAT
Found at i:69720216 original size:88 final size:88
Alignment explanation
Indices: 69719542--69720191 Score: 1176
Period size: 88 Copynumber: 7.4 Consensus size: 88
69719532 AGCAGATCGG
* * *
69719542 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCTAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
* *
69719607 CCAT-GGATTGCAGCGGAGCATGC
66 CCCTAGG-TTGCAGCGGAGCAGGC
* * * * *
69719630 TAAAAATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAAATCGAAGACACCAGCCTTGTCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
*
69719695 CCCTGGGTTGCAGCGGAGCAGGC
66 CCCTAGGTTGCAGCGGAGCAGGC
69719718 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
69719783 CCCTAGGTTGCAGCGGAGCAGGC
66 CCCTAGGTTGCAGCGGAGCAGGC
69719806 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
69719871 CCCTAGGTTGCAGCGGAGCAGGC
66 CCCTAGGTTGCAGCGGAGCAGGC
69719894 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
69719959 CCCTAGGTTGCAGCGGAGCAGGC
66 CCCTAGGTTGCAGCGGAGCAGGC
69719982 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
69720047 CCCTAGGTTGCAGCGGAGCAGGC
66 CCCTAGGTTGCAGCGGAGCAGGC
69720070 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
69720135 CCCTAGGTTGCAGCGGAGCAGGC
66 CCCTAGGTTGCAGCGGAGCAGGC
*
69720158 TAAAAATAGCAGATCTTGCCTTCCTGCACTGACA
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACA
69720192 ACGAAGCATA
Statistics
Matches: 548, Mismatches: 13, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
88 546 1.00
89 2 0.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (88 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAGATCGAATACACCAGCCTTGCCT
CCCTAGGTTGCAGCGGAGCAGGC
Found at i:69720343 original size:44 final size:44
Alignment explanation
Indices: 69720218--69720974 Score: 904
Period size: 44 Copynumber: 17.8 Consensus size: 44
69720208 AACCCAGCCA
* *
69720218 TATCTCACTGGTCAGCAGTGGAATAGGTTAGAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
69720262 TATCTCCCTGGACA-AAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
69720305 TATCTCCCTGGACAACAGAGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
69720349 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
69720393 TATCTCCCTGGGCAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
69720431 TATCTCCCTGGTCAGCAGTGGAATAAGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
69720475 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGAGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
69720519 TATCTCCCTGGTCAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
69720557 TATCTCCCTGGTCAGTAGTCGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
69720601 TATCTCCCTGGACAGCAGTGGAATAGGTTAAATATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * **
69720645 TATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
69720689 TATCTCCCTAGG-CAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
69720727 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
69720771 TATCTCCCTGGACAGAAGTGGAATAGGTTAAAGATTGTAAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * *
69720815 TATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * *
69720859 TATCTCCCTAAG-CAGCAGTGGAATAGATTAAAGA----G--CCC
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
69720897 TATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
*
69720941 TATCTCCCTAGGT-AGCAGTGGAATAGATTAAAGA
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGA
69720975 GTCCTATCTC
Statistics
Matches: 608, Mismatches: 75, Indels: 60
0.82 0.10 0.08
Matches are distributed among these distances:
37 3 0.00
38 126 0.21
40 4 0.01
42 4 0.01
43 41 0.07
44 425 0.70
45 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
Found at i:69720482 original size:126 final size:126
Alignment explanation
Indices: 69720218--69720974 Score: 810
Period size: 126 Copynumber: 5.9 Consensus size: 126
69720208 AACCCAGCCA
* * *
69720218 TATCTCACTGGTCAGCAGTGGAATAGGTTAGAGATTGTGAATCCTATCTCCCTGGACA-AAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTA-AGATTGAGAATCCTATCTCCCTGGACAGCAGTGG
* * *
69720282 AATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAACAGAGGAATAGGTTAAAGATTGTGAAT
65 AATAGGTTAAAGA----G-ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
69720347 CC
125 CC
* * *
69720349 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTGGGCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTT-AAGATTGAGAATCCTATCTCCCTGGACAGCAGTGG
* * *
69720414 AATAGATTAAAGAG-CCCTATCTCCCTGGTCAGCAGTGGAATAAGTTAAAGATTGTGAATCC
65 AATAGGTTAAAGAGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* *
69720475 TATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGATTGAGAATCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTT-AAGATTGAGAATCCTATCTCCCTGGACAGCAGTGG
* * * *
69720540 AATAGATTAAAGAG-CCCTATCTCCCTGGTCAGTAGTCGAATAGGTTAAAGATTGTGAATCC
65 AATAGGTTAAAGAGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
* * * * *
69720601 TATCTCCCTGGACAGCAGTGGAATAGGTTAAATATTGTGAATCCTATCTCCCAGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTT-AAGATTGAGAATCCTATCTCCCTGGACAGCAGTGG
** *
69720666 AATAGGTTGAAGATTGAGAATTTTATCTCCCTAGG-CAGCAGTGGAATAGATTAAAGA----G--
65 AATAGGTT-AA-A--GAG-ATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAA
*
69720724 CCC
124 TCC
* *
69720727 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGAAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTT-AAGATTGAGAATCCTATCTCCCTGGACAGCAGTGG
* * *
69720792 AATAGGTTAAAGATTGTAAATCCTATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
65 AATAGGTTAAAGA--G---ATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
*
69720857 TC
125 CC
* * *
69720859 TATCTCCCTAAG-CAGCAGTGGAATAGATTAA-A--GAG--CCCTATCTCCCTGGACAGCAGTGG
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTAAGATTGAGAATCCTATCTCCCTGGACAGCAGTGG
*
69720918 AATAGGTTAAAGATTGTGAATCCTATCTCCCTAGGT-AGCAGTGGAATAGATTAAAGA
65 AATAGGTTAAAGA----G-ATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGA
69720975 GTCCTATCTC
Statistics
Matches: 548, Mismatches: 54, Indels: 53
0.84 0.08 0.08
Matches are distributed among these distances:
122 2 0.00
124 2 0.00
125 4 0.01
126 395 0.72
127 5 0.01
128 7 0.01
130 5 0.01
131 53 0.10
132 72 0.13
133 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (126 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTAAGATTGAGAATCCTATCTCCCTGGACAGCAGTGGA
ATAGGTTAAAGAGATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCC
Found at i:69720605 original size:170 final size:170
Alignment explanation
Indices: 69720213--69720974 Score: 1076
Period size: 170 Copynumber: 4.5 Consensus size: 170
69720203 TGATGAACCC
* * * *
69720213 AGCCATATCTCACTGGTCAGCAGTGGAATAGGTTAGAGATTGTGAATCCTATCTCCCTGGACA-A
1 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
* * * *
69720277 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAACAGAGGAATAGGTTAAAGATTG
66 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
* * *
69720342 TGAATCCTATCTCCCT-GGTCAGTAGTGGAATAGGTTGAAGATTG
131 AGAATCCTATCTCCCTAGG-CAGCAGTGGAATAGATT-AA-A--G
** * * * *
69720386 AGAATTCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGA----G--CCCTATCTCCCTGGTCA
1 AG--CCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACA
* *
69720445 GCAGTGGAATAAGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGAAATAGGTTGAAGAT
64 GCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGAT
69720510 TGAGAATCCTATCTCCCT-GGTCAGCAGTGGAATAGATTAAAG
129 TGAGAATCCTATCTCCCTAGG-CAGCAGTGGAATAGATTAAAG
* *
69720552 AGCCCTATCTCCCTGGTCAGTAGTCGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
1 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
* *
69720617 AGTGGAATAGGTTAAATATTGTGAATCCTATCTCCCAGGTCAGCAGTGGAATAGGTTGAAGATTG
66 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
**
69720682 AGAATTTTATCTCCCTAGGCAGCAGTGGAATAGATTAAAG
131 AGAATCCTATCTCCCTAGGCAGCAGTGGAATAGATTAAAG
*
69720722 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGA
1 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
* *
69720787 AGTGGAATAGGTTAAAGATTGTAAATCCTATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATTG
66 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
* *
69720852 AGAATTCTATCTCCCTAAGCAGCAGTGGAATAGATTAAAG
131 AGAATCCTATCTCCCTAGGCAGCAGTGGAATAGATTAAAG
* *
69720892 AGCCCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTAGG-TAG
1 AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCT-GGACAG
*
69720956 CAGTGGAATAGATTAAAGA
65 CAGTGGAATAGGTTAAAGA
69720975 GTCCTATCTC
Statistics
Matches: 532, Mismatches: 46, Indels: 25
0.88 0.08 0.04
Matches are distributed among these distances:
164 31 0.06
166 3 0.01
168 2 0.00
169 17 0.03
170 442 0.83
171 5 0.01
173 2 0.00
175 30 0.06
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (170 bp):
AGCCCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGC
AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG
AGAATCCTATCTCCCTAGGCAGCAGTGGAATAGATTAAAG
Found at i:69720944 original size:82 final size:82
Alignment explanation
Indices: 69720813--69720984 Score: 272
Period size: 82 Copynumber: 2.1 Consensus size: 82
69720803 GATTGTAAAT
* * * *
69720813 CCTATCTCCTTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAATTCTATCTCCCTAAGCAGCAGT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTAAGCAGCAGT
69720878 GGAATAGATTAAAGAGC
66 GGAATAGATTAAAGAGC
* * *
69720895 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTAGGTAGCAGT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTAAGCAGCAGT
*
69720960 GGAATAGATTAAAGAGT
66 GGAATAGATTAAAGAGC
69720977 CCTATCTC
1 CCTATCTC
69720985 TGTAACACCC
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (82 bp):
CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGAGAATCCTATCTCCCTAAGCAGCAGT
GGAATAGATTAAAGAGC
Found at i:69721791 original size:22 final size:22
Alignment explanation
Indices: 69721765--69721840 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
69721755 TTTCACATTC
69721765 ATCACATCGGCCATTTGGCCTT
1 ATCACATCGGCCATTTGGCCTT
**** ** *
69721787 ATCACATATATACACTTTCACATT
1 ATCACAT-CGGCCA-TTTGGCCTT
69721811 CATCACATCGGCCATTTGGCCTT
1 -ATCACATCGGCCATTTGGCCTT
69721834 ATCACAT
1 ATCACAT
69721841 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATCGGCCATTTGGCCTT
Found at i:69721794 original size:47 final size:47
Alignment explanation
Indices: 69721742--69721878 Score: 265
Period size: 47 Copynumber: 2.9 Consensus size: 47
69721732 AATCATCACA
69721742 CACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTAT
69721789 CACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTAT
1 CACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTAT
*
69721836 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CACATATATACACTTTCACATTCATCACATCGGCCATTTGGCC
69721879 ATACTATCAT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTAT
Found at i:69724334 original size:44 final size:44
Alignment explanation
Indices: 69724271--69724820 Score: 670
Period size: 44 Copynumber: 12.6 Consensus size: 44
69724261 GGGTGTCACA
*
69724271 ATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * **
69724315 ATCTCCTTGGTCAGCAGTGGAATAGGTTTAAGATTGAGAATTTT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* *
69724359 ATCTCCCTAGGT-AGCAGTGGAATAGATTAAAGA----G--CCCT
1 ATCTCCCT-GGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
*
69724397 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAATATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * *
69724441 ATCTCCCTGGACAGTAGTGGAATATGTTAAAGATTGTAAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* *
69724485 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAATATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * *
69724529 ATCTCCCTGGACAGTAGTGGAATATGTTAAAGATTGTAAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
69724573 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* *
69724617 ATCTCCCTGGACAGCAGTGGGATAGGTTAAAGATTGTGAATCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * *
69724661 ATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAATTCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
* * * * *
69724705 ATCTCTCTGGGCAGCAGTGGAATAGATTGAAGATTGT-AGGTCCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGA-ATCCT
* * **
69724749 ATCTCCCTGGTCAGCAGTGGAATAGGTTGAACATCATGAA-CGCT
1 ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATC-CT
* *
69724793 ATCTCCCTGAG-CAGTAGTGGAGTAGGTT
1 ATCTCCCTG-GTCAGCAGTGGAATAGGTT
69724821 GAAAATAACA
Statistics
Matches: 434, Mismatches: 60, Indels: 24
0.84 0.12 0.05
Matches are distributed among these distances:
37 3 0.01
38 28 0.06
40 1 0.00
42 1 0.00
43 2 0.00
44 394 0.91
45 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (44 bp):
ATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCT
Found at i:69724959 original size:50 final size:50
Alignment explanation
Indices: 69724896--69725037 Score: 131
Period size: 50 Copynumber: 2.8 Consensus size: 50
69724886 CTTGATGTTG
* * * *
69724896 CAATGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACATTG
1 CAATGAAAAAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACAGTA
* * * * * ****
69724946 CAATTAAAAAGATTGAAGCCACAACGGTGAATCTTATTTCCTTGGCAGTA
1 CAATGAAAAAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACAGTA
* * * *
69724996 TAGTGGAATAGATTGAAGCTACGACGGCGAATCTTGTTTCCC
1 CAATGAAAAAGATTGAAGCTACGACGGCGAATCTTGTTTCCC
69725038 TGATATTCCA
Statistics
Matches: 69, Mismatches: 23, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (50 bp):
CAATGAAAAAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCAACAGTA
Found at i:69725167 original size:44 final size:44
Alignment explanation
Indices: 69725074--69725270 Score: 120
Period size: 44 Copynumber: 4.6 Consensus size: 44
69725064 ATGGCAAATA
* * *
69725074 TTATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGTCGATAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACCATAATC
* * * *
69725118 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA-ACCTTGGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACCAT-AATC
* * * * * * *
69725162 TTATCTCTCTGAAGTTACAG-AGAGTAGA-T--CGCATC-TAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-ACCATAATC
* * * *
69725202 TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAATA-AATAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACCAT-AATC
* * * *
69725246 CTACCTCCCTAAAGTTGTAGTGGAG
1 TTATCTCCCTGAAGTTGCAGTGGAG
69725271 TGGATCAGAA
Statistics
Matches: 113, Mismatches: 31, Indels: 18
0.70 0.19 0.11
Matches are distributed among these distances:
40 19 0.17
41 7 0.06
42 4 0.04
43 9 0.08
44 74 0.65
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGACCATAATC
Found at i:69725308 original size:128 final size:129
Alignment explanation
Indices: 69725074--69725325 Score: 319
Period size: 128 Copynumber: 2.0 Consensus size: 129
69725064 ATGGCAAATA
* * * ** * *
69725074 TTATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGTCGATAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAAGTAAATAATCCTACCTCCCTAAAGTTGCAGT
* * * * *
69725139 GGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTACAG-AGAGTAGATCGCATCTAGTC
66 GGAGCGGATCAAAACCATGGATCTTATCTCTCTAAAATTACAGTAGAGTAGACCGCATCTAGTC
*
69725202 TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAA-TAAATAAATCCTACCTCCCTAAAGTTGTAG
1 TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAAGTAAAT-AATCCTACCTCCCTAAAGTTGCAG
* * ** *
69725266 TGGAGTGGATCAGAATGATGGATCTTATCTCTCTAAAATTACAGTATAGTAGACCGCATC
65 TGGAGCGGATCAAAACCATGGATCTTATCTCTCTAAAATTACAGTAGAGTAGACCGCATC
69725326 AAATTTATTT
Statistics
Matches: 104, Mismatches: 18, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
127 3 0.03
128 88 0.85
129 13 0.12
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (129 bp):
TTATCTCCCCGAAGTTGCAGTGGAGCAGACTAAAGTAAATAATCCTACCTCCCTAAAGTTGCAGT
GGAGCGGATCAAAACCATGGATCTTATCTCTCTAAAATTACAGTAGAGTAGACCGCATCTAGTC
Found at i:69726624 original size:20 final size:20
Alignment explanation
Indices: 69726585--69726624 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
69726575 AGTTTTTTTT
**
69726585 ATTTTTTTAATTTCCCTTTA
1 ATTTTTTTAATTTCAATTTA
69726605 ATTTTTTTAATTTCAATTTA
1 ATTTTTTTAATTTCAATTTA
69726625 GCCCTATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.25, C:0.10, G:0.00, T:0.65
Consensus pattern (20 bp):
ATTTTTTTAATTTCAATTTA
Found at i:69726884 original size:27 final size:26
Alignment explanation
Indices: 69726829--69726893 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 26
69726819 AATTATTTTT
*
69726829 TATGTAATTTTTATTATTTATATATA
1 TATGTAATTTTTATTATTTATATACA
* *
69726855 TATGTACATTTGTTGTT-TTTATGTACA
1 TATGTA-ATTT-TTATTATTTATATACA
* *
69726882 TATTTATTTTTT
1 TATGTAATTTTT
69726894 TTAATGAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
25 2 0.06
26 9 0.28
27 17 0.53
28 4 0.12
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.63
Consensus pattern (26 bp):
TATGTAATTTTTATTATTTATATACA
Found at i:69728119 original size:14 final size:14
Alignment explanation
Indices: 69728100--69728142 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
69728090 TTGTCGGTTG
69728100 TTTATTT-TTTCTTA
1 TTTATTTATTT-TTA
69728114 TTTATTTATTTATT-
1 TTTATTTATTT-TTA
69728128 TTTATTTATTTTTA
1 TTTATTTATTTTTA
69728142 T
1 T
69728143 CTCATTAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 2 0.08
14 19 0.73
15 5 0.19
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTATTTATTTTTA
Found at i:69728121 original size:18 final size:18
Alignment explanation
Indices: 69728100--69728138 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
69728090 TTGTCGGTTG
69728100 TTTATTT-TTTCTTATTTA
1 TTTATTTATTT-TTATTTA
69728118 TTTATTTATTTTTATTTA
1 TTTATTTATTTTTATTTA
69728136 TTT
1 TTT
69728139 TTATCTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTATTTATTTTTATTTA
Found at i:69728918 original size:41 final size:41
Alignment explanation
Indices: 69728873--69728951 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
69728863 TGGCGCTAAC
* * * *
69728873 AGAAAAACGCCGCAATAGGTAAAGAAGTAGCGGCGTTTATA
1 AGAAAAACACCACAAAAGGTAAAGAAGTAACGGCGTTTATA
*
69728914 AGAAAAACACCACAAAAGGTAAAGTAGTAACGGCGTTT
1 AGAAAAACACCACAAAAGGTAAAGAAGTAACGGCGTTT
69728952 TTCTCATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.44, C:0.15, G:0.24, T:0.16
Consensus pattern (41 bp):
AGAAAAACACCACAAAAGGTAAAGAAGTAACGGCGTTTATA
Found at i:69729170 original size:25 final size:25
Alignment explanation
Indices: 69729136--69729214 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
69729126 GATTGTCCCT
* *
69729136 TCTACTGCATCACTATCGACACTCC
1 TCTACCGCATCACTGTCGACACTCC
* *
69729161 TCTACCGCATTACCGTC-AGCACTCC
1 TCTACCGCATCACTGTCGA-CACTCC
* *
69729186 TTTGCCGCATCA-TCGTCGACACTCC
1 TCTACCGCATCACT-GTCGACACTCC
69729211 TCTA
1 TCTA
69729215 TTGCATCGAT
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
24 1 0.02
25 39 0.95
26 1 0.02
ACGTcount: A:0.20, C:0.41, G:0.11, T:0.28
Consensus pattern (25 bp):
TCTACCGCATCACTGTCGACACTCC
Found at i:69729495 original size:22 final size:23
Alignment explanation
Indices: 69729470--69729514 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
69729460 TTTTTTTGGG
*
69729470 TTATTTTTTAGGTT-TATTATTA
1 TTATTTTTTAGGTTATATCATTA
*
69729492 TTATTTTTTGGGTTATATCATTA
1 TTATTTTTTAGGTTATATCATTA
69729515 ACTTTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.22, C:0.02, G:0.11, T:0.64
Consensus pattern (23 bp):
TTATTTTTTAGGTTATATCATTA
Found at i:69730221 original size:28 final size:28
Alignment explanation
Indices: 69730190--69730341 Score: 100
Period size: 28 Copynumber: 5.2 Consensus size: 28
69730180 TAATTAAATA
69730190 AATAATCATATTTCATAATAATTTTATG
1 AATAATCATATTTCATAATAATTTTATG
** *
69730218 AATAA-CTATTTAATTTTCGAT--TAATTAAATA
1 AATAATC-A--T-A-TTTC-ATAATAATTTTATG
69730249 AATAATCATATTTCATAATAATTTTATG
1 AATAATCATATTTCATAATAATTTTATG
** *
69730277 AATAA-CTATTTAATTTTCGAT--TAATTAAATA
1 AATAATC-A--T-A-TTTC-ATAATAATTTTATG
69730308 AATAATCATATTTCATAATAATTTTATG
1 AATAATCATATTTCATAATAATTTTATG
69730336 AATAAT
1 AATAAT
69730342 TATTTAATTT
Statistics
Matches: 94, Mismatches: 12, Indels: 36
0.66 0.08 0.25
Matches are distributed among these distances:
26 4 0.04
27 10 0.11
28 34 0.36
29 2 0.02
30 2 0.02
31 28 0.30
32 10 0.11
33 4 0.04
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (28 bp):
AATAATCATATTTCATAATAATTTTATG
Found at i:69730243 original size:31 final size:31
Alignment explanation
Indices: 69730208--69730361 Score: 98
Period size: 27 Copynumber: 5.2 Consensus size: 31
69730198 TATTTCATAA
*
69730208 TAATTTTATGAATAACTATTTAATTTTCGAT
1 TAATTTTATGAATAAATATTTAATTTTCGAT
* *
69730239 TAA--TTA--AATAAATA-ATCATATTTC-AT
1 TAATTTTATGAATAAATATTTAAT-TTTCGAT
*
69730265 AATAATTTTATGAATAACTATTTAATTTTCGAT
1 --TAATTTTATGAATAAATATTTAATTTTCGAT
* *
69730298 TAA--TTA--AATAAATA-ATCATATTTC-AT
1 TAATTTTATGAATAAATATTTAAT-TTTCGAT
* *
69730324 AATAATTTTATGAATAATTATTTAATTTTTGAT
1 --TAATTTTATGAATAAATATTTAATTTTCGAT
69730357 TAATT
1 TAATT
69730362 AAATAAATAA
Statistics
Matches: 92, Mismatches: 13, Indels: 36
0.65 0.09 0.26
Matches are distributed among these distances:
26 10 0.11
27 22 0.24
28 6 0.07
29 6 0.07
30 6 0.07
31 11 0.12
32 21 0.23
33 10 0.11
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (31 bp):
TAATTTTATGAATAAATATTTAATTTTCGAT
Found at i:69730260 original size:59 final size:59
Alignment explanation
Indices: 69730172--69730379 Score: 398
Period size: 59 Copynumber: 3.5 Consensus size: 59
69730162 AGTTAATTAG
69730172 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
1 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
69730231 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
1 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
*
69730290 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAATTATTTAA
1 TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
*
69730349 TTTTTGATTAATTAAATAAATAATCATATTT
1 TTTTCGATTAATTAAATAAATAATCATATTT
69730380 AAAGTTAATG
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
59 147 1.00
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (59 bp):
TTTTCGATTAATTAAATAAATAATCATATTTCATAATAATTTTATGAATAACTATTTAA
Found at i:69730423 original size:43 final size:43
Alignment explanation
Indices: 69730376--69730458 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
69730366 AAATAATCAT
69730376 ATTTAAAGTTAATGATAATCATAACTTACATAAACATTTAAAC
1 ATTTAAAGTTAATGATAATCATAACTTACATAAACATTTAAAC
* *
69730419 ATTTAAAGTTAATGATTATCATAACTTATATAAACATTTA
1 ATTTAAAGTTAATGATAATCATAACTTACATAAACATTTA
69730459 GAGAATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.39
Consensus pattern (43 bp):
ATTTAAAGTTAATGATAATCATAACTTACATAAACATTTAAAC
Found at i:69738884 original size:247 final size:247
Alignment explanation
Indices: 69738441--69738929 Score: 771
Period size: 247 Copynumber: 2.0 Consensus size: 247
69738431 GAAGTGCAGT
* *
69738441 GAAAGGCCTCGAGCCTAATTTACAGGCAGCTCAGCTGCAAACCACTATCTAGTGCCACATTCAGT
1 GAAAGGCCTCGAGCCTAATTTACAGACAGCTCAACTGCAAACCACTATCTAGTGCCACATTCAGT
* * * * *
69738506 CCTTTTTGGAGGGTAAGGATGGGTGGGTTGATTATATCCTCACATGGAGTGTAGGGTTGGACGGA
66 ACGTTTTGGAGGGTAAGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTAGACAGA
* *
69738571 GTTGGAGTGTAGAGGCTGGCTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAGTATTG
131 GTTGGAGTGTAGAGGCTAGCTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAATATTG
* *
69738636 ATACTGTAATGGGCCAAGGCCCAAATGCATGACTGCTTATGTATTGTTCGGA
196 ATACTGTAATGAGCCAAGGCCCAAATGCATGACTACTTATGTATTGTTCGGA
* * ** **
69738688 GAAAGGCCTCGAGCCTAATTTACTGACAGTTCAACTGCAAACCACTATCTAGTGCCGGATTTGGT
1 GAAAGGCCTCGAGCCTAATTTACAGACAGCTCAACTGCAAACCACTATCTAGTGCCACATTCAGT
* *
69738753 ACGTTTTGGAGTGTAGGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTAGACAGA
66 ACGTTTTGGAGGGTAAGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTAGACAGA
* *
69738818 GTTGGAGTGTTGAGGCTAGTTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAATATTG
131 GTTGGAGTGTAGAGGCTAGCTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAATATTG
* *
69738883 ATACTGTAATGAGCCAAGGCCCAAATGTATGACTACTTCTGTATTGT
196 ATACTGTAATGAGCCAAGGCCCAAATGCATGACTACTTATGTATTGT
69738930 AATGGGCTAA
Statistics
Matches: 219, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
247 219 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (247 bp):
GAAAGGCCTCGAGCCTAATTTACAGACAGCTCAACTGCAAACCACTATCTAGTGCCACATTCAGT
ACGTTTTGGAGGGTAAGGATGGGTGGGTTGATTATATCCCCACATGGAGTGTAGGGTTAGACAGA
GTTGGAGTGTAGAGGCTAGCTGGGTAGGATTTGATACTGCATATCTGTTACTGTACTGAATATTG
ATACTGTAATGAGCCAAGGCCCAAATGCATGACTACTTATGTATTGTTCGGA
Found at i:69738889 original size:18 final size:19
Alignment explanation
Indices: 69738852--69738890 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
69738842 TAGGATTTGA
* *
69738852 TACTGCATATCTGTTACTG
1 TACTGAATATCTGATACTG
69738871 TACTGAATAT-TGATACTG
1 TACTGAATATCTGATACTG
69738889 TA
1 TA
69738891 ATGAGCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (19 bp):
TACTGAATATCTGATACTG
Found at i:69739170 original size:6 final size:6
Alignment explanation
Indices: 69739159--69739185 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
69739149 TTTAATTAGG
69739159 TTTATT TTTATT TTTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTT
69739186 TTGAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:69742039 original size:25 final size:25
Alignment explanation
Indices: 69741977--69742057 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
69741967 AGTAAGTTTT
* * * *
69741977 CTGAAACTATTTTTGATAGTATATC
1 CTGAAACTACTATAGATAGTATATA
* * *
69742002 CTGAAATTGCTATAGGTAGTATATA
1 CTGAAACTACTATAGATAGTATATA
*
69742027 CTGAGACTACTATAGATAG-ACTATA
1 CTGAAACTACTATAGATAGTA-TATA
69742052 CTGAAA
1 CTGAAA
69742058 ACACTCAAAT
Statistics
Matches: 43, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
24 1 0.02
25 42 0.98
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (25 bp):
CTGAAACTACTATAGATAGTATATA
Found at i:69744157 original size:12 final size:12
Alignment explanation
Indices: 69744140--69744164 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69744130 GATCCATGCG
69744140 TATGTGTATTGA
1 TATGTGTATTGA
69744152 TATGTGTATTGA
1 TATGTGTATTGA
69744164 T
1 T
69744165 TACCGACAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (12 bp):
TATGTGTATTGA
Found at i:69750007 original size:43 final size:43
Alignment explanation
Indices: 69749918--69750000 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
69749908 GTTAGTGGCG
* * * *
69749918 TTTTCCCACAAACACCACTAAAGAACATGA-CATTTATCGGCAC
1 TTTTCCCACAAACGCCGCTAAAGAACATGATC-TTTAGCGACAC
69749961 TTTTCCCACAAACGCCGCTAAAGAACATGATCTTTAGCGA
1 TTTTCCCACAAACGCCGCTAAAGAACATGATCTTTAGCGA
69750001 TGCTTTTACT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 34 0.97
44 1 0.03
ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24
Consensus pattern (43 bp):
TTTTCCCACAAACGCCGCTAAAGAACATGATCTTTAGCGACAC
Found at i:69750051 original size:43 final size:43
Alignment explanation
Indices: 69749970--69750051 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 43
69749960 CTTTTCCCAC
*
69749970 AAACGCCGCTAAAGAACATGATCTTTAGCGATGCTTTTACTGA
1 AAACGCCGCTAAAGAACATGATCTTTAGCGACGCTTTTACTGA
* * * * * *
69750013 AAACGCCGTTAAAGATCATGTTTTTTAGCGGCGTTTTTA
1 AAACGCCGCTAAAGAACATGATCTTTAGCGACGCTTTTA
69750052 TGAGAAGTGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGACGCTTTTACTGA
Found at i:69752719 original size:35 final size:35
Alignment explanation
Indices: 69752673--69752742 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
69752663 AGACTGAGGA
69752673 TTACCTGCACGGTTAAAAGGAAAGAGCGAGTTTAC
1 TTACCTGCACGGTTAAAAGGAAAGAGCGAGTTTAC
* *
69752708 TTACCTGCACGGTTAAAAGGGAAGAGTGAGTTTAC
1 TTACCTGCACGGTTAAAAGGAAAGAGCGAGTTTAC
69752743 GAAACTCAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (35 bp):
TTACCTGCACGGTTAAAAGGAAAGAGCGAGTTTAC
Found at i:69753251 original size:54 final size:51
Alignment explanation
Indices: 69753192--69753350 Score: 153
Period size: 54 Copynumber: 3.0 Consensus size: 51
69753182 GGTCATAACA
*
69753192 GTCATTTCATCTCCTAGGGGTATAATAGTCATTTTACCCTATGGGGCTAATTCG
1 GTCATTTCATC-CCTAGGGGTA-ATTAGTCATTTTACCCTATGGGG-TAATTCG
* * *
69753246 GTCATTTTA-CCTTATGGGGTAATTCGGTCATTTTACCCTATGAGGGTAATTCG
1 GTCATTTCATCCCTA-GGGGTAATT-AGTCATTTTACCCTATG-GGGTAATTCG
*
69753299 GTCA-TTC-TACCCTATAGGGGTAATTCGATCATTTTACCCTATGGGGGTAATT
1 GTCATTTCAT-CCC--TAGGGGTAATTAG-TCATTTTACCCTAT-GGGGTAATT
69753351 TAATCATTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
52 7 0.08
53 37 0.42
54 42 0.47
55 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (51 bp):
GTCATTTCATCCCTAGGGGTAATTAGTCATTTTACCCTATGGGGTAATTCG
Found at i:69753358 original size:54 final size:53
Alignment explanation
Indices: 69753220--69753350 Score: 208
Period size: 53 Copynumber: 2.5 Consensus size: 53
69753210 GGTATAATAG
* * * *
69753220 TCATTTTACCCTATGGGGCTAATTCGGTCATTTTACCTTATGGGGTAATTCGG
1 TCATTTTACCCTATGGGGGTAATTCGGTCATTCTACCCTATGGGGTAATTCGA
*
69753273 TCATTTTACCCTATGAGGGTAATTCGGTCATTCTACCCTATAGGGGTAATTCGA
1 TCATTTTACCCTATGGGGGTAATTCGGTCATTCTACCCTAT-GGGGTAATTCGA
69753327 TCATTTTACCCTATGGGGGTAATT
1 TCATTTTACCCTATGGGGGTAATT
69753351 TAATCATTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 37 0.52
54 34 0.48
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (53 bp):
TCATTTTACCCTATGGGGGTAATTCGGTCATTCTACCCTATGGGGTAATTCGA
Found at i:69753361 original size:27 final size:27
Alignment explanation
Indices: 69753219--69753350 Score: 203
Period size: 27 Copynumber: 4.9 Consensus size: 27
69753209 GGGTATAATA
*
69753219 GTCATTTTACCCTATGGGGCTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
*
69753246 GTCATTTTACCTTAT-GGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
*
69753272 GTCATTTTACCCTATGAGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
* *
69753299 GTCATTCTACCCTATAGGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
*
69753326 ATCATTTTACCCTATGGGGGTAATT
1 GTCATTTTACCCTATGGGGGTAATT
69753351 TAATCATTTT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 24 0.26
27 70 0.74
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTAATTCG
Found at i:69756310 original size:60 final size:60
Alignment explanation
Indices: 69756139--69756302 Score: 321
Period size: 60 Copynumber: 2.8 Consensus size: 60
69756129 ATTACATAAA
69756139 TATTTAAAGTTAAAAAGTTAAAATATATGATATGGAAAAAGAAATAAAAAAAGAAGTATT
1 TATTTAAAGTTAAAAAGTTAAAATATATGATATGGAAAAAGAAATAAAAAAAGAAGTATT
69756199 TATTTAAAGTTAAAAAGTTAAAATATATGATATGGAAAAAGAAATAAAAAAAGAAGTATT
1 TATTTAAAGTTAAAAAGTTAAAATATATGATATGGAAAAAGAAATAAAAAAAGAAGTATT
69756259 TATTTAAAGTTAAAAAGTTAAAATATATGATATGGAAAAA-AAAT
1 TATTTAAAGTTAAAAAGTTAAAATATATGATATGGAAAAAGAAAT
69756303 TTTAAAAAAA
Statistics
Matches: 104, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
59 4 0.04
60 100 0.96
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (60 bp):
TATTTAAAGTTAAAAAGTTAAAATATATGATATGGAAAAAGAAATAAAAAAAGAAGTATT
Found at i:69763105 original size:2 final size:2
Alignment explanation
Indices: 69763098--69763140 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
69763088 AGATAAAATT
*
69763098 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TC TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
69763140 T
1 T
69763141 CACTACATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.02, G:0.47, T:0.51
Consensus pattern (2 bp):
TG
Found at i:69764965 original size:23 final size:22
Alignment explanation
Indices: 69764913--69764970 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
69764903 AATCTTCAAA
*
69764913 GATATGAAATCTTAG---ATAT
1 GATATGTAATCTTAGAACATAT
69764932 GATATGTAATCTTAGAACATAT
1 GATATGTAATCTTAGAACATAT
*
69764954 GATTCTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
69764971 GTTTTGATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.42
22 6 0.18
23 13 0.39
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
GATATGTAATCTTAGAACATAT
Found at i:69765886 original size:28 final size:28
Alignment explanation
Indices: 69765854--69765909 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
69765844 AAGCAGTTTG
69765854 ATATAGTGATTATAGGTAAAGCTTAAAA
1 ATATAGTGATTATAGGTAAAGCTTAAAA
69765882 ATATAGTGATTATAGGTAAAGCTTAAAA
1 ATATAGTGATTATAGGTAAAGCTTAAAA
69765910 GGTGCGAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.18, T:0.32
Consensus pattern (28 bp):
ATATAGTGATTATAGGTAAAGCTTAAAA
Found at i:69780871 original size:27 final size:27
Alignment explanation
Indices: 69780841--69781017 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
69780831 AAATTGTACA
* * *
69780841 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
69780868 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
69780895 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
69780922 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * * *
69780950 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
69780977 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
69781004 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
69781018 GGCTCAATAA
Statistics
Matches: 125, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 100 0.80
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:69780960 original size:82 final size:81
Alignment explanation
Indices: 69780841--69780996 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
69780831 AAATTGTACA
* * * * *
69780841 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGGGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
69780905 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
69780922 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGGGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
69780987 TGCGAGTTGA
65 TGCGAATTGA
69780997 TTATATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 14 0.22
82 48 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:69780981 original size:55 final size:54
Alignment explanation
Indices: 69780841--69781017 Score: 187
Period size: 54 Copynumber: 3.3 Consensus size: 54
69780831 AAATTGTACA
* * * *
69780841 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
* * ** *
69780895 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGAT-GAATATGAT
* * * *
69780949 GGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 -GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
*
69781003 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
69781018 GGCTCAATAA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
54 58 0.57
55 44 0.43
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGATGAATATGAT
Found at i:69781008 original size:82 final size:81
Alignment explanation
Indices: 69780837--69781017 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
69780827 GATTAAATTG
* * * * * *
69780837 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
69780902 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
69780918 TGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
69780982 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
69781000 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
69781018 GGCTCAATAA
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:69783516 original size:32 final size:32
Alignment explanation
Indices: 69783473--69783552 Score: 97
Period size: 32 Copynumber: 2.5 Consensus size: 32
69783463 TGATTGGAAT
*
69783473 AAAGCCATCAGTAGCAGTGACATGACCAGCAC
1 AAAGCCATCAGTAGCAGTAACATGACCAGCAC
* * * * *
69783505 ACAGCCATCAGTAACGGTAATATGACCGGCAC
1 AAAGCCATCAGTAGCAGTAACATGACCAGCAC
*
69783537 AAAGCCGTCAGTAGCA
1 AAAGCCATCAGTAGCA
69783553 TCGCAGCAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.36, C:0.28, G:0.23, T:0.14
Consensus pattern (32 bp):
AAAGCCATCAGTAGCAGTAACATGACCAGCAC
Found at i:69783655 original size:80 final size:80
Alignment explanation
Indices: 69783507--69783659 Score: 245
Period size: 80 Copynumber: 1.9 Consensus size: 80
69783497 ACCAGCACAC
* * * *
69783507 AGCCATCAGTAACGGTAATATGACCGGCACAAAGCCGTCAGTAGCATCGCAGCAAAGTTGTCAGC
1 AGCCATCAGTAACGATAATATGACCGGCACAAAGCCATCAGTAGCATCGCAGCAAAGTTGCCAAC
69783572 AACAGTATCGCAGCA
66 AACAGTATCGCAGCA
*
69783587 AGCCATCAGTAACGATAATATGACCGGCACAAAGCCATCAGTAGTATCGCAGCAAAGCTT-CCAA
1 AGCCATCAGTAACGATAATATGACCGGCACAAAGCCATCAGTAGCATCGCAGCAAAG-TTGCCAA
69783651 CAACAGTAT
65 CAACAGTAT
69783660 TGCAACAAAG
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
80 65 0.97
81 2 0.03
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (80 bp):
AGCCATCAGTAACGATAATATGACCGGCACAAAGCCATCAGTAGCATCGCAGCAAAGTTGCCAAC
AACAGTATCGCAGCA
Found at i:69783898 original size:24 final size:24
Alignment explanation
Indices: 69783801--69783890 Score: 117
Period size: 24 Copynumber: 3.8 Consensus size: 24
69783791 CCATGCTCAG
**
69783801 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATTTAAATCACAGACA
* * *
69783825 AATTAGTCATTTAAATCACAAAAA
1 AATCAGTCATTTAAATCACAGACA
*
69783849 AATCAATCATTTAAATCACAGACA
1 AATCAGTCATTTAAATCACAGACA
*
69783873 AATCAGTCATTTACATCA
1 AATCAGTCATTTAAATCA
69783891 GGGACAAAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 55 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.26
Consensus pattern (24 bp):
AATCAGTCATTTAAATCACAGACA
Found at i:69783934 original size:26 final size:25
Alignment explanation
Indices: 69783872--69783948 Score: 77
Period size: 26 Copynumber: 3.0 Consensus size: 25
69783862 AATCACAGAC
*
69783872 AAATCAGTCATTTACA-TCAGGGACAA
1 AAAT-AGTCATTTACACTCAGGGGC-A
69783898 AAATA-TCATTTACACTCGAGGGGCA
1 AAATAGTCATTTACACTC-AGGGGCA
* *
69783923 AAATAGTTATTTACCCTCCAGGGGCA
1 AAATAGTCATTTACACT-CAGGGGCA
69783949 TTATGATCAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
24 9 0.20
25 9 0.20
26 25 0.57
27 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (25 bp):
AAATAGTCATTTACACTCAGGGGCA
Found at i:69783972 original size:27 final size:27
Alignment explanation
Indices: 69783932--69784422 Score: 444
Period size: 27 Copynumber: 18.1 Consensus size: 27
69783922 AAAATAGTTA
* * *
69783932 TTTACCCTCCAGGGGCATTATGATCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * * * *
69783959 TTTACCTTATAGGGGTATTTCAGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* ** *
69783986 TTAACCCTATGGGGGTATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* *
69784013 TTTACCCTACATGGGCATTATGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
*
69784040 TTTACCCTACAAGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
*
69784067 TTTACCTTACAGGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
** *
69784094 TTTACCCTATGGGGGCATTACGGTTAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * ** **
69784121 TTTACCTTATAGGGGTTTTTTGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * *
69784148 TTTACCTTACAAGGGCATTACAGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* *
69784175 TTTACCCTACGGGGGCATTACGGTTAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* ** **
69784202 TTTACCCTATAAGGGGTTTTTTGGTCAT
1 TTTACCCTA-CAGGGGCATTACGGTCAT
* * *
69784230 TTTACCCTACAGGGGTATTACGATTAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * *
69784257 TTTAACTTACAAGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* *
69784284 TTTACCCTAC-GGGGACGTTACGATCAT
1 TTTACCCTACAGGGG-CATTACGGTCAT
** ** * *
69784311 TTTACCCTATGGGGGTTTTTCGATCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
*
69784338 TTTACCCTACAAGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
* * ** * *
69784365 TTTACCCTATAAGGGTTTTTCAGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
*
69784392 TTTACCCTACAGGGGTATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGGTCAT
69784419 TTTA
1 TTTA
69784423 AAAATATTGG
Statistics
Matches: 370, Mismatches: 91, Indels: 6
0.79 0.19 0.01
Matches are distributed among these distances:
26 3 0.01
27 343 0.93
28 24 0.06
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
TTTACCCTACAGGGGCATTACGGTCAT
Found at i:69784029 original size:81 final size:81
Alignment explanation
Indices: 69783932--69784422 Score: 502
Period size: 81 Copynumber: 6.0 Consensus size: 81
69783922 AAAATAGTTA
* * * * * **
69783932 TTTACCCTCCAGGGGCATTATGATCATTTTACCTTATAGGGGTATTTCAGTCATTTAACCCTATG
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
69783997 GGGGTATTACGGTCAT
66 GGGGTATTACGGTCAT
* * * * * * * *
69784013 TTTACCCTACATGGGCATTATGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACCTTACA
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
*
69784078 GGGGCATTACGGTCAT
66 GGGGTATTACGGTCAT
** * * * ** *
69784094 TTTACCCTATGGGGGCATTACGGTTATTTTACCTTATAGGGGTTTTTTGGTCATTTTACCTTACA
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
* * *
69784159 AGGGCATTACAGTCAT
66 GGGGTATTACGGTCAT
* * * **
69784175 TTTACCCTACGGGGGCATTACGGTTATTTTACCCTATAAGGGGTTTTTTGGTCATTTTACCCTAC
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTAT-AGGGGTATTTCAGTCATTTTACCCTAC
* *
69784240 AGGGGTATTACGATTAT
65 AGGGGTATTACGGTCAT
* * * * *
69784257 TTTAACTTACAAGGGCATTACGGTCATTTTACCCTA-CGGGG-ACGTT-ACGATCATTTTACCCT
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTA-TTTCA-G-TCATTTTACCCT
** * * *
69784319 ATGGGGGTTTTTCGATCAT
63 ACAGGGGTATTACGGTCAT
* * *
69784338 TTTACCCTACAAGGGCATTACGGTCATTTTACCCTATAAGGGTTTTTCAGTCATTTTACCCTACA
1 TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
69784403 GGGGTATTACGGTCAT
66 GGGGTATTACGGTCAT
69784419 TTTA
1 TTTA
69784423 AAAATATTGG
Statistics
Matches: 342, Mismatches: 61, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
80 7 0.02
81 259 0.76
82 75 0.22
83 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (81 bp):
TTTACCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTTCAGTCATTTTACCCTACA
GGGGTATTACGGTCAT
Found at i:69792346 original size:22 final size:22
Alignment explanation
Indices: 69792321--69792362 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
69792311 CGGCACCACC
69792321 ATTTTTTTAATAAT-TTATTTTT
1 ATTTTTTTAA-AATATTATTTTT
69792343 ATTTTTTTAAAATATTATTT
1 ATTTTTTTAAAATATTATTT
69792363 ATTTAGTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (22 bp):
ATTTTTTTAAAATATTATTTTT
Found at i:69792938 original size:108 final size:105
Alignment explanation
Indices: 69792750--69793011 Score: 318
Period size: 108 Copynumber: 2.5 Consensus size: 105
69792740 TTTTATGTTG
* * *
69792750 TTTTTAATTTATTTTAAAGTT-TTTTGTTAGTTACTATTATAAATTATTTGTTTAGTTTAATGTT
1 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAACTATTATAAATTAATTGTTTAGTTTAAGGTT
**
69792814 TATTGTGATTTGTTAGGTTATGGATAT-TAAT-TTTTATTAA
66 TATTGTGATTTGTTAGGTTAT-GA-ATGTAATCTTTTAACAA
* * ** *
69792854 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAGTTTTGTGATTAGGTTAATTGTTT-GTTTAG
1 TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAA-CTAT-T-A-TAAATTAATTGTTTAGTTTAA
*
69792918 GGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTAACAT
62 GGTTTATTGTGATTTGTTAGGTTATGAATGTAATCTTTTAACAA
*
69792962 TTTTTAATTTATTTGT-ACGTTATTTTGTTAGTAACTATTATAAATTAATT
1 TTTTTAATTTATTT-TAAAGTTATTTTGTTAGTAACTATTATAAATTAATT
69793012 ATTAGTTAGT
Statistics
Matches: 134, Mismatches: 16, Indels: 16
0.81 0.10 0.10
Matches are distributed among these distances:
104 29 0.22
105 12 0.09
106 5 0.04
107 9 0.07
108 67 0.50
109 12 0.09
ACGTcount: A:0.26, C:0.02, G:0.14, T:0.58
Consensus pattern (105 bp):
TTTTTAATTTATTTTAAAGTTATTTTGTTAGTAACTATTATAAATTAATTGTTTAGTTTAAGGTT
TATTGTGATTTGTTAGGTTATGAATGTAATCTTTTAACAA
Found at i:69796893 original size:112 final size:108
Alignment explanation
Indices: 69796680--69796893 Score: 277
Period size: 112 Copynumber: 1.9 Consensus size: 108
69796670 ATCAAATAAA
* * * *
69796680 TAAAAAACAAATAAAATTACATTATAACAAATCACAATACACATTAAACTAAACAAATAATTTAT
1 TAAAAAACAAAAAAAATTACATTATAACAAATCACAATAAACACTAAACTAAACAAACAATTTAT
**
69796745 AACCTAATCATAAATTACTAACAAAATAACTTAAAAATAATTT
66 AACCTAATCATAAATTACTAACAAAATAACCAAAAAATAATTT
* *
69796788 TAAAACACAAAAAAAATTTACATTTATAACAAGTCACAATAAACACTAAACTAAACACAAACAAT
1 TAAAAAACAAAAAAAA-TTACA-TTATAACAAATCACAATAAACACTAAACT-AA-ACAAACAAT
* **
69796853 TTATAACCTAATTATAAATTACTGGGCAAAAT-ACCAAAAAA
62 TTATAACCTAATCATAAATTACT-AACAAAATAACCAAAAAA
69796894 AGCCCTATTT
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
108 14 0.16
109 5 0.06
110 26 0.29
111 2 0.02
112 37 0.41
113 6 0.07
ACGTcount: A:0.57, C:0.15, G:0.02, T:0.25
Consensus pattern (108 bp):
TAAAAAACAAAAAAAATTACATTATAACAAATCACAATAAACACTAAACTAAACAAACAATTTAT
AACCTAATCATAAATTACTAACAAAATAACCAAAAAATAATTT
Found at i:69798198 original size:105 final size:102
Alignment explanation
Indices: 69798018--69798619 Score: 668
Period size: 105 Copynumber: 5.8 Consensus size: 102
69798008 TAATTTGCCC
* * * *
69798018 TAAATTGCTAACAAAATAACTTTAAAATAAAT-AACAAAATTTGCATTCATAAAAAAATCACAAT
1 TAAATTACTAACAAAATAACTTTAAAATAATTAAAAAAAATTTACATTCAT-AAAAAATCACAA-
69798082 AAACACTAAACTAAACACAAACAATTTATAACCTAATCA
64 AAACACTAAACTAAACACAAACAATTTATAACCTAATCA
* *
69798121 AAAATTACTAACAAAATAACTTTCAAATAATTAAAAAAAATTTTACATTCATAAAAAAATCACAA
1 TAAATTACTAACAAAATAACTTTAAAATAATTAAAAAAAA-TTTACATTCAT-AAAAAATCACAA
* * *
69798186 TAAACATTAAACTAAATACAAACAATTTATAACCTAACCA
64 -AAACACTAAACTAAACACAAACAATTTATAACCTAATCA
* * * *
69798226 TAAATTACTAACAAAATGACTTTCAAATAATTTAAAAAATACAAAAAGAAATTTACGTTCATGAA
1 TAAATTACTAACAAAATAACTTT--AA-AA--T----AAT-TAAAAA-AAATTTACATTCATAAA
*
69798291 AAATCACAAAAA-ACTAAACTAAACACAAACAATTTATAACCAAATCA
55 AAATCACAAAAACACTAAACTAAACACAAACAATTTATAACCTAATCA
* *
69798338 TAAATTACTAACAAAATAACTATAAAATAATTAAAAAAACAAAAAAAATTACATTCAT-AAAAAT
1 TAAATTACTAACAAAATAACTTTAAAATAATT------A-AAAAAAATTTACATTCATAAAAAAT
*
69798402 CAC-AAAATACTAAACTAAACACAAACAATTTATAACCTAATCA
59 CACAAAAACACTAAACTAAACACAAACAATTTATAACCTAATCA
* * * * * *
69798445 TAAATTATTAA-AAAGTAACTATAAAATAATTTTAAAAAAATTTACATTAATAAAAATTCAC-AA
1 TAAATTACTAACAAAATAACTTTAAAATAA-TTAAAAAAAATTTACATTCATAAAAAATCACAAA
*
69798508 AACACTAAACTAAATACAAACAATTTATAACCTAATCA
65 AACACTAAACTAAACACAAACAATTTATAACCTAATCA
* *
69798546 TAAATTACTAACAAAATAACTTTCAAATAA-T-AAAAAAA-TAACATTCATAAAAAATCAC-AAA
1 TAAATTACTAACAAAATAACTTTAAAATAATTAAAAAAAATTTACATTCATAAAAAATCACAAAA
69798607 ACA-TAAAACTAAA
66 ACACT-AAACTAAA
69798620 AATAAACACA
Statistics
Matches: 434, Mismatches: 40, Indels: 55
0.82 0.08 0.10
Matches are distributed among these distances:
97 1 0.00
98 31 0.07
99 7 0.02
100 17 0.04
101 56 0.13
102 15 0.03
103 31 0.07
104 6 0.01
105 81 0.19
106 21 0.05
107 57 0.13
108 15 0.03
109 6 0.01
110 3 0.01
112 52 0.12
113 3 0.01
114 14 0.03
115 15 0.03
116 3 0.01
ACGTcount: A:0.59, C:0.15, G:0.01, T:0.25
Consensus pattern (102 bp):
TAAATTACTAACAAAATAACTTTAAAATAATTAAAAAAAATTTACATTCATAAAAAATCACAAAA
ACACTAAACTAAACACAAACAATTTATAACCTAATCA
Found at i:69798340 original size:112 final size:109
Alignment explanation
Indices: 69798153--69798484 Score: 463
Period size: 112 Copynumber: 3.0 Consensus size: 109
69798143 TCAAATAATT
* *
69798153 AAAAAAAATTTTACATTCATAAAAAAATCACAATAAACATTAAACTAAATACAAACAATTTATAA
1 AAAAAAAA-TTTACATTCAT--AAAAATCACAA-AAA-ACTAAACTAAACACAAACAATTTATAA
* * * *
69798218 CCTAACCATAAATTACTAACAAAATGACTTTCAAATAATTTAAAAAATAC
61 CCTAATCATAAATTACTAACAAAATAACTATAAAATAATTTAAAAAA-AC
* *
69798268 AAAAAGAAATTTACGTTCATGAAAAATCACAAAAAACTAAACTAAACACAAACAATTTATAACCA
1 AAAAA-AAATTTACATTCAT-AAAAATCACAAAAAACTAAACTAAACACAAACAATTTATAACCT
69798333 AATCATAAATTACTAACAAAATAACTATAAAATAA-TTAAAAAAAC
64 AATCATAAATTACTAACAAAATAACTATAAAATAATTTAAAAAAAC
*
69798378 AAAAAAAA-TTACATTCATAAAAATCACAAAATACTAAACTAAACACAAACAATTTATAACCTAA
1 AAAAAAAATTTACATTCATAAAAATCACAAAAAACTAAACTAAACACAAACAATTTATAACCTAA
* *
69798442 TCATAAATTATTAA-AAAGTAACTATAAAATAATTTTAAAAAAA
66 TCATAAATTACTAACAAAATAACTATAAAATAA-TTTAAAAAAA
69798485 TTTACATTAA
Statistics
Matches: 200, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
106 17 0.09
107 57 0.28
108 18 0.09
109 3 0.01
110 7 0.04
111 8 0.04
112 58 0.29
113 3 0.01
114 11 0.05
115 15 0.08
116 3 0.01
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.25
Consensus pattern (109 bp):
AAAAAAAATTTACATTCATAAAAATCACAAAAAACTAAACTAAACACAAACAATTTATAACCTAA
TCATAAATTACTAACAAAATAACTATAAAATAATTTAAAAAAAC
Found at i:69798627 original size:98 final size:98
Alignment explanation
Indices: 69798379--69798627 Score: 333
Period size: 101 Copynumber: 2.5 Consensus size: 98
69798369 TAAAAAAACA
* *
69798379 AAAAAAATTACATTCAT-AAAAATCACAAAATACTAAACTAAACACAAACAATTTATAACCTAAT
1 AAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAAAACAAACAATTTATAACCTAAT
* *
69798443 CATAAATTATTAAAAAGTAACTATAAAATAATTTT
66 CATAAATTACTAAAAAATAACTATAAAATAA--TT
* * *
69798478 AAAAAAATTTACATTAATAAAAATTCACAAAACACTAAACTAAATACAAACAATTTATAACCTAA
1 AAAAAAA-TTACATTCATAAAAAATCACAAAACACTAAACTAAAAACAAACAATTTATAACCTAA
* *
69798543 TCATAAATTACTAACAAAATAACTTTCAAATAA-T
65 TCATAAATTACTAA-AAAATAACTATAAAATAATT
* *
69798577 AAAAAAATAACATTCATAAAAAATCACAAAACA-TAAAACTAAAAATAAACA
1 AAAAAAATTACATTCATAAAAAATCACAAAACACT-AAACTAAAAACAAACA
69798628 CAAACACAAA
Statistics
Matches: 133, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
97 1 0.01
98 37 0.28
99 15 0.11
100 9 0.07
101 56 0.42
102 15 0.11
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.25
Consensus pattern (98 bp):
AAAAAAATTACATTCATAAAAAATCACAAAACACTAAACTAAAAACAAACAATTTATAACCTAAT
CATAAATTACTAAAAAATAACTATAAAATAATT
Found at i:69798681 original size:208 final size:207
Alignment explanation
Indices: 69798053--69798677 Score: 526
Period size: 208 Copynumber: 3.0 Consensus size: 207
69798043 AATAAATAAC
*
69798053 AAAATTTGCATTCATAAAAAAATCACAATAAACACTAAACTAAACACAAACAATTTATAACCTAA
1 AAAATTTACATTCAT-AAAAAATCAC-A-AAACACTAAACTAAACACAAACAATTTATAACCTAA
* *
69798118 TCAAAAATTACTAACAAAATAACTTTCAAATAATTAAAAAAAATTTTACATTCATAAAAAAATCA
63 TCATAAATTACTAACAAAATAACTTTCAAATAA-T-AAAAAAA--TAACATTCAT-AAAAAATCA
* * * *** * * ** *
69798183 CAATAAACATTAAACTAAATACAAACA-ATTTATAACCTAA-CCAT-A-AATTACTAACAAAATG
123 C-A-AAACATAAAACTAAAAATAAACACAAACACAAAC-AATTTATAATAATTAATAACAAAA--
**
69798244 ACTTTCAA-ATAATTTAAAA-AATACAAAA
183 A--AACAATATAA---AAAATAATACAAAA
* * * *
69798272 AGAAATTTACGTTCATGAAAAATCACAAAAAACTAAACTAAACACAAACAATTTATAACCAAATC
1 A-AAATTTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAATC
* * * * **
69798337 ATAAATTACTAACAAAATAACTATAAAATAAT-TAAAAA-AACA---A-AAAAAATTAC-ATTCA
65 ATAAATTACTAACAAAATAACTTTCAAATAATAAAAAAATAACATTCATAAAAAATCACAAAACA
* * **
69798395 TAAAAATCACAAAATACTAA-ACTAAACACAAACAATTTATAACCTAATCATAAATTATTAAAAA
130 TAAAACT-A-AAAATA--AACAC-AAACACAAACAATTTATAA--TAAT--T-AATAACAAAAAA
** ***
69798459 GTAACTAT--AAAATAATTTTAAA
185 ACAA-TATAAAAAATAATACAAAA
* * *
69798481 AAAATTTACATTAATAAAAATTCACAAAACACTAAACTAAATACAAACAATTTATAACCTAATCA
1 AAAATTTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAATCA
69798546 TAAATTACTAACAAAATAACTTTCAAATAATAAAAAAATAACATTCATAAAAAATCACAAAACAT
66 TAAATTACTAACAAAATAACTTTCAAATAATAAAAAAATAACATTCATAAAAAATCACAAAACAT
69798611 AAAACTAAAAATAAACACAAACACAAACAATTTATAATAATTAATAACAAAAAAACAATATAAAA
131 AAAACTAAAAATAAACACAAACACAAACAATTTATAATAATTAATAACAAAAAAACAATATAAAA
69798676 AA
196 AA
69798678 ATAACTAATC
Statistics
Matches: 325, Mismatches: 53, Indels: 68
0.73 0.12 0.15
Matches are distributed among these distances:
203 8 0.02
204 1 0.00
205 7 0.02
206 21 0.06
207 9 0.03
208 98 0.30
209 17 0.05
210 4 0.01
211 26 0.08
212 5 0.02
213 10 0.03
214 16 0.05
215 15 0.05
216 1 0.00
217 64 0.20
218 1 0.00
219 10 0.03
220 12 0.04
ACGTcount: A:0.60, C:0.15, G:0.01, T:0.25
Consensus pattern (207 bp):
AAAATTTACATTCATAAAAAATCACAAAACACTAAACTAAACACAAACAATTTATAACCTAATCA
TAAATTACTAACAAAATAACTTTCAAATAATAAAAAAATAACATTCATAAAAAATCACAAAACAT
AAAACTAAAAATAAACACAAACACAAACAATTTATAATAATTAATAACAAAAAAACAATATAAAA
AATAATACAAAA
Found at i:69799116 original size:23 final size:24
Alignment explanation
Indices: 69799073--69799122 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
69799063 CGACACTACT
* *
69799073 AAATAAAATAATATTTCTTAA-AA
1 AAATAAAATAATAATTATTAACAA
69799096 AAATAAAAATAA-AATTATTAACAA
1 AAAT-AAAATAATAATTATTAACAA
69799120 AAA
1 AAA
69799123 GGTGATGCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAAATAATAATTATTAACAA
Found at i:69802995 original size:27 final size:22
Alignment explanation
Indices: 69802924--69802989 Score: 109
Period size: 22 Copynumber: 3.0 Consensus size: 22
69802914 GTCAAGGGTT
69802924 AGGG-TTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTA
69802945 AGGGTTTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTA
69802967 AGGGTTTAGGGTTTGTTAA-TTA
1 AGGGTTTAGGGTTT-TTAAGTTA
69802989 A
1 A
69802990 ATTAAGCATT
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
21 4 0.09
22 35 0.81
23 4 0.09
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (22 bp):
AGGGTTTAGGGTTTTTAAGTTA
Found at i:69803553 original size:18 final size:17
Alignment explanation
Indices: 69803522--69803561 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
69803512 ACTCGGAAAG
* *
69803522 AGGAACATATAAGGGTT
1 AGGAACATAAAAGGGCT
69803539 AGGATACATAAAAGGGCT
1 AGGA-ACATAAAAGGGCT
69803557 AGGAA
1 AGGAA
69803562 ACGCACCTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.45, C:0.07, G:0.30, T:0.17
Consensus pattern (17 bp):
AGGAACATAAAAGGGCT
Found at i:69807341 original size:122 final size:122
Alignment explanation
Indices: 69807174--69807418 Score: 445
Period size: 122 Copynumber: 2.0 Consensus size: 122
69807164 ATAGATACTC
69807174 TATAAGATTAAAGTTATCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT
1 TATAAGATTAAAGTTATCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT
* *
69807239 TTCAATCCGGGTAAAACCTTAGAGAAAGAGTGAACTAACCTTCCATATCTTTTTTTA
66 TTCAATCCAGGTAAAACCTTAGAGAAAGAGTGAACTAACCTTCCATATCTATTTTTA
* *
69807296 TATAAGATTGAAGTTGTCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT
1 TATAAGATTAAAGTTATCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT
*
69807361 TTCAATCCAGGTAAAACCTTGGAGAAAGAGTGAACTAACCTTCCATATCTATTTTTA
66 TTCAATCCAGGTAAAACCTTAGAGAAAGAGTGAACTAACCTTCCATATCTATTTTTA
69807418 T
1 T
69807419 TGTATCATTC
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
122 118 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (122 bp):
TATAAGATTAAAGTTATCTTCTTGGAATTATGGTTGGGAGGAAATTTTGATATTTTAGAGTATGT
TTCAATCCAGGTAAAACCTTAGAGAAAGAGTGAACTAACCTTCCATATCTATTTTTA
Found at i:69832224 original size:68 final size:68
Alignment explanation
Indices: 69832101--69832263 Score: 177
Period size: 68 Copynumber: 2.4 Consensus size: 68
69832091 CATAGCCTAA
* * * ** * * **
69832101 CTATGGTCTTACACTATATGATGTCACGTTTACTTTCCTGGTGGATTTCATATGTTGTTATAACT
1 CTATGGTCTTACACAATATGGTGTCATGTTTACTTTCCTGGCAGACTTCACATGTTGCCAT-ACT
*
69832166 -CTG
65 GCAG
*
69832169 CTATGGTCTTACACAATATGGTGTCATGTTTA-TTGTCCTGGCAGACTTCACATGTTGCCATAGT
1 CTATGGTCTTACACAATATGGTGTCATGTTTACTT-TCCTGGCAGACTTCACATGTTGCCATACT
69832233 GCAG
65 GCAG
* *
69832237 CTATGGTCTTACACAACATGGTTTCAT
1 CTATGGTCTTACACAATATGGTGTCAT
69832264 ATTTTCCCAT
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
67 4 0.05
68 76 0.95
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (68 bp):
CTATGGTCTTACACAATATGGTGTCATGTTTACTTTCCTGGCAGACTTCACATGTTGCCATACTG
CAG
Found at i:69837997 original size:27 final size:27
Alignment explanation
Indices: 69837966--69838142 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
69837956 TAAATTGTAC
69837966 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
69837993 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69838019 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
69838047 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
69838075 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
69838102 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69838129 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
69838143 AGACTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69838080 original size:82 final size:81
Alignment explanation
Indices: 69837967--69838122 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
69837957 AAATTGTACA
* *
69837967 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
69838031 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
69838048 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
69838113 TGCGAGTTGA
65 TGCGAATTGA
69838123 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:69838134 original size:82 final size:81
Alignment explanation
Indices: 69837963--69838142 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
69837953 GATTAAATTG
* *
69837963 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
69838028 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
69838044 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
69838108 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
69838126 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
69838143 AGACTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:69840071 original size:16 final size:16
Alignment explanation
Indices: 69840050--69840080 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69840040 TTCACTATTA
*
69840050 TGTCTTTTTTATTTTT
1 TGTCTTTTATATTTTT
69840066 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
69840081 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.06, T:0.77
Consensus pattern (16 bp):
TGTCTTTTATATTTTT
Found at i:69841798 original size:21 final size:20
Alignment explanation
Indices: 69841763--69841825 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
69841753 TATCTTGTAG
* * *
69841763 ATAAGTATTCTATTATTTTA
1 ATAAATATTATATTAATTTA
69841783 ATAAGAT-TTAATATTAAATTTA
1 ATAA-ATATT-ATATT-AATTTA
69841805 ATAAATATTATATTAATTTA
1 ATAAATATTATATTAATTTA
69841825 A
1 A
69841826 AATTAAAGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
20 13 0.36
21 12 0.33
22 11 0.31
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (20 bp):
ATAAATATTATATTAATTTA
Found at i:69842414 original size:38 final size:38
Alignment explanation
Indices: 69842356--69842507 Score: 187
Period size: 38 Copynumber: 4.0 Consensus size: 38
69842346 TAGACTATTT
**
69842356 TCATGGTGTCGCTCCGTAGAGCCAATAGATAATAATTC
1 TCATGGTGTCGCTCCGTAGAGCCAATAGATAACCATTC
* * * * *
69842394 TCATAGTGTCACTCCATAGAGCCAGTAGTTAACCATTC
1 TCATGGTGTCGCTCCGTAGAGCCAATAGATAACCATTC
*
69842432 TCATGGTGTCGCTTCGTAGAGCCAATAGATAACCATTC
1 TCATGGTGTCGCTCCGTAGAGCCAATAGATAACCATTC
* * * * *
69842470 TCACGGTGTCGCTCTGTAGAACTAGTAGATAACCATTC
1 TCATGGTGTCGCTCCGTAGAGCCAATAGATAACCATTC
69842508 CACGATGCCG
Statistics
Matches: 95, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 95 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (38 bp):
TCATGGTGTCGCTCCGTAGAGCCAATAGATAACCATTC
Found at i:69842479 original size:76 final size:75
Alignment explanation
Indices: 69842325--69842507 Score: 217
Period size: 76 Copynumber: 2.4 Consensus size: 75
69842315 CCTCTTTCAA
* * *
69842325 GGTGTCACTCCATAGAACCTGTAG--ACTATTTTCATGGTGTCGCTCCGTAGAGCCAATAGATAA
1 GGTGTCACTCCATAGAACCAGTAGTAACCATTCTCATGGTGTCGCTCCGTAGAGCCAATAGATAA
* *
69842388 TAATTCTCAT
66 CAATTCTCAC
* * *
69842398 AGTGTCACTCCATAGAGCCAGTAGTTAACCATTCTCATGGTGTCGCTTCGTAGAGCCAATAGATA
1 GGTGTCACTCCATAGAACCAGTAG-TAACCATTCTCATGGTGTCGCTCCGTAGAGCCAATAGATA
*
69842463 ACCATTCTCAC
65 ACAATTCTCAC
* ** *
69842474 GGTGTCGCTCTGTAGAACTAGTAGATAACCATTC
1 GGTGTCACTCCATAGAACCAGTAG-TAACCATTC
69842508 CACGATGCCG
Statistics
Matches: 91, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
73 21 0.23
76 70 0.77
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (75 bp):
GGTGTCACTCCATAGAACCAGTAGTAACCATTCTCATGGTGTCGCTCCGTAGAGCCAATAGATAA
CAATTCTCAC
Found at i:69843593 original size:18 final size:17
Alignment explanation
Indices: 69843570--69843626 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 17
69843560 TTTGAAATTT
69843570 ATTTAATATTTTTATAAA
1 ATTTAATATTTTT-TAAA
69843588 ATTTAATAATTTTTTTAAA
1 ATTTAAT-A-TTTTTTAAA
**
69843607 AAAT-ATATTTTTTAAA
1 ATTTAATATTTTTTAAA
69843623 ATTT
1 ATTT
69843627 TTAAAAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 11 0.33
17 1 0.03
18 9 0.27
19 7 0.21
20 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTAATATTTTTTAAA
Found at i:69843602 original size:21 final size:22
Alignment explanation
Indices: 69843564--69843638 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
69843554 GAAAATTTTG
* *
69843564 AAATTTATTTAATATTTTTATA
1 AAATTTATATAATATTTTTAAA
*
69843586 AAATTTA-ATAATTTTTTTAAAA
1 AAATTTATATAATATTTTT-AAA
* * *
69843608 AATATATTTTTTAAAATTTTTAAA
1 AA-AT-TTATATAATATTTTTAAA
69843632 AAATTTA
1 AAATTTA
69843639 AGCTTTGAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
21 9 0.22
22 13 0.32
23 4 0.10
24 7 0.17
25 8 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
AAATTTATATAATATTTTTAAA
Found at i:69843616 original size:25 final size:25
Alignment explanation
Indices: 69843588--69843635 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
69843578 TTTTTATAAA
**
69843588 ATTTAATAATTTTTTTAAAAAATAT
1 ATTTAATAAAATTTTTAAAAAATAT
**
69843613 ATTTTTTAAAATTTTTAAAAAAT
1 ATTTAATAAAATTTTTAAAAAAT
69843636 TTAAGCTTTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTAATAAAATTTTTAAAAAATAT
Found at i:69850675 original size:15 final size:15
Alignment explanation
Indices: 69850657--69850691 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
69850647 AAATTTCATG
69850657 ATAAAAAATAAAAAA
1 ATAAAAAATAAAAAA
* *
69850672 ATAAAAAATTATAAA
1 ATAAAAAATAAAAAA
69850687 ATAAA
1 ATAAA
69850692 TAACATGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (15 bp):
ATAAAAAATAAAAAA
Done.