Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 228 of 313
Found at i:70219004 original size:75 final size:74
Alignment explanation
Indices: 70218881--70219026 Score: 177
Period size: 75 Copynumber: 1.9 Consensus size: 74
70218871 ATTTAAAGGA
* * *
70218881 ATTTTGTTTCAATAAAAACGGCAGTGTTCTATAGGATATATTAGTGGCGTTTTGGGTAAAACACC
1 ATTTTGTTTCAATAAAAACGGCA-CGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACACC
70218946 GCAAAATGTG
65 GCAAAATGTG
* * * * *
70218956 ATTTTGTTTCAATAAAAACGTTGC-CGTTCTGTAAGATTTCTTACTGGCGTTTTTGGTAAAACGC
1 ATTTTGTTTCAATAAAAACG--GCACGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACAC
*
70219020 CGGAAAA
64 CGCAAAA
70219027 GATCATCCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
75 58 0.97
77 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (74 bp):
ATTTTGTTTCAATAAAAACGGCACGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACACCG
CAAAATGTG
Found at i:70219221 original size:114 final size:115
Alignment explanation
Indices: 70218966--70219222 Score: 286
Period size: 114 Copynumber: 2.3 Consensus size: 115
70218956 ATTTTGTTTC
* *
70218966 AATAAAAACGTTGCCGTTCTGTAAGATTTCTTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
1 AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
* * * * * * *
70219031 ATCCTTTAGCGGCGCTATGTCAAAAACGCCGCAAAATGTGATTCTGTTTT
66 AGCCTTTAGCGGCGCTACGTCAAAAACGCCACAAAATGTCAATCGGTTAT
* ** * *
70219081 AAT-AAAACGCTGCCGTGGTGTAGGATTTATTAGTGGCGTTTTTTGTAAAACGCC-GAAAACG-T
1 AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAA-GAT
* *** * *
70219143 CAGCCTTTAGCGGCGCTGCGTTGGAAACGCCACAAAATTTCAATGGGTTAT
65 CAGCCTTTAGCGGCGCTACGTCAAAAACGCCACAAAATGTCAATCGGTTAT
* *
70219194 AATAAAAACGTTGCCGTTTTGTTGGATTT
1 AATAAAAACGTTGCCGTTCTGTAGGATTT
70219223 TGTGTTGACC
Statistics
Matches: 116, Mismatches: 24, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
113 47 0.41
114 66 0.57
115 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (115 bp):
AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
AGCCTTTAGCGGCGCTACGTCAAAAACGCCACAAAATGTCAATCGGTTAT
Found at i:70219452 original size:189 final size:189
Alignment explanation
Indices: 70219219--70219597 Score: 589
Period size: 189 Copynumber: 2.0 Consensus size: 189
70219209 GTTTTGTTGG
* * * *
70219219 ATTTTGTGTTGACCGAAACGAAATCGTTTTTATGTTTTTAGTGGCGTTTTTGTTAAAACGCCGGA
1 ATTTTGTGTTGACCAAAACGAAACCGTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCCGCA
* * * *
70219284 AAAGATCTTGCTTTAGCGGCGCTTATCTTAAAACGCCGCAAGAATGTTATTTTGTGTTTACCAAA
66 AAAGATCTTACTTTAGCGGCGCTTATCTTAAAACGCCACAAAAATGTTATTATGTGTTTACCAAA
70219349 ACGTGACCGTTTTTTTATGTATTTAGTGGCGTTTTTATTAAAACGCCGCAAAA-ATGTT
131 ACGTGACCGTTTTTTTATGTATTTAGTGGCGTTTTTATTAAAACGCCGCAAAATATGTT
* **
70219407 ATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCCGC
1 ATTTTGTGTTGACCAAAACGAAACCG-TTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCCGC
* * * *
70219472 AAAAGATGTTACTTTAGCGGCGCTTCTTTTAAAATGCCACAAAAATGTTATTATGTGTTTACCAA
65 AAAAGATCTTACTTTAGCGGCGCTTATCTTAAAACGCCACAAAAATGTTATTATGTGTTTACCAA
* *
70219537 AACGTGACCGTTTTTTTATGTATTTAGTGGCGTTTTTGTTAAAATGCCGCAAAATATGTT
130 AACGTGACCGTTTTTTTATGTATTTAGTGGCGTTTTTATTAAAACGCCGCAAAATATGTT
70219597 A
1 A
70219598 CTTTAGCGGC
Statistics
Matches: 172, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
188 21 0.12
189 145 0.84
190 6 0.03
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (189 bp):
ATTTTGTGTTGACCAAAACGAAACCGTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCCGCA
AAAGATCTTACTTTAGCGGCGCTTATCTTAAAACGCCACAAAAATGTTATTATGTGTTTACCAAA
ACGTGACCGTTTTTTTATGTATTTAGTGGCGTTTTTATTAAAACGCCGCAAAATATGTT
Found at i:70219474 original size:74 final size:75
Alignment explanation
Indices: 70219311--70219482 Score: 310
Period size: 75 Copynumber: 2.3 Consensus size: 75
70219301 GGCGCTTATC
*
70219311 TTAAAACGCCGCAAGAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
70219376 GGCGTTTTTA
66 GGCGTTTTTA
70219386 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCG-TTTTTTATGTATTTAGT
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
*
70219450 GGCGTTTTTG
66 GGCGTTTTTA
70219460 TTAAAACGCCGCAAAAGATGTTA
1 TTAAAACGCCGCAAAA-ATGTTA
70219483 CTTTAGCGGC
Statistics
Matches: 94, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
74 42 0.45
75 52 0.55
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (75 bp):
TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
GGCGTTTTTA
Found at i:70219601 original size:115 final size:114
Alignment explanation
Indices: 70219386--70219702 Score: 553
Period size: 115 Copynumber: 2.8 Consensus size: 114
70219376 GGCGTTTTTA
70219386 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
* *
70219451 GCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGCGCTTCTT
66 GCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGCGCTTATC
* * *
70219500 TTAAAATGCCACAAAAATGTTATTATGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCG-TTTTTTATGTATTTAGT
* *
70219565 GGCGTTTTTGTTAAAATGCCGCAAAATATGTTACTTTAGCGGCGCTTATC
65 GGCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGCGCTTATC
70219615 TTAAAACGCCGCAAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGT
1 TTAAAACGCCGC-AAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGT
70219680 GGCGTTTTTGTTAAAACGCCGCA
65 GGCGTTTTTGTTAAAACGCCGCA
70219703 GGTGTTTATT
Statistics
Matches: 190, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
114 44 0.23
115 112 0.59
116 34 0.18
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (114 bp):
TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
GCGTTTTTGTTAAAACGCCGCAAAAGATGTTACTTTAGCGGCGCTTATC
Found at i:70222496 original size:17 final size:17
Alignment explanation
Indices: 70222474--70222772 Score: 161
Period size: 17 Copynumber: 16.6 Consensus size: 17
70222464 GTTAAATTTA
70222474 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
70222491 TTACTAAAATAAATTAC
1 TTACTAAAATACATTAC
*
70222508 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
70222531 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
70222548 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
* *
70222565 TTACATAAATTTGTTTAAATTTA-
1 TTAC-TAAA-----ATACA-TTAC
*
70222588 TTTCTAAAATACATTAC
1 TTACTAAAATACATTAC
*
70222605 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
70222628 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
70222645 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
70222662 TTACTAAAAT---TT-G
1 TTACTAAAATACATTAC
** *
70222675 TT--T-AAATTTATTAA
1 TTACTAAAATACATTAC
*
70222689 TTACTTAAATACATTAC
1 TTACTAAAATACATTAC
*
70222706 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
70222729 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
70222746 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
70222763 TTACTAAAAT
1 TTACTAAAAT
70222773 TTGTTTAAAT
Statistics
Matches: 225, Mismatches: 18, Indels: 78
0.70 0.06 0.24
Matches are distributed among these distances:
10 4 0.02
11 1 0.00
13 4 0.02
14 4 0.02
16 13 0.06
17 136 0.60
18 4 0.02
22 4 0.02
23 43 0.19
24 12 0.05
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.43
Consensus pattern (17 bp):
TTACTAAAATACATTAC
Found at i:70222547 original size:40 final size:40
Alignment explanation
Indices: 70222491--70222654 Score: 157
Period size: 40 Copynumber: 3.7 Consensus size: 40
70222481 AATACATTAC
*
70222491 TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
*
70222531 TTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGTTTAAA
1 TTACTAAAATACATTACTTACTAAAAT---TT-GTT---TAAA----TTT--A
70222584 TTTATTTCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 -TTA---CTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
70222628 TTACTAAAATACATTACTTACTAAAAT
1 TTACTAAAATACATTACTTACTAAAAT
70222655 ACATTACTTA
Statistics
Matches: 104, Mismatches: 3, Indels: 34
0.74 0.02 0.24
Matches are distributed among these distances:
40 50 0.48
43 5 0.05
44 3 0.03
46 3 0.03
47 4 0.04
50 4 0.04
51 3 0.03
53 3 0.03
54 5 0.05
57 24 0.23
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (40 bp):
TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
Found at i:70222553 original size:57 final size:57
Alignment explanation
Indices: 70222465--70222614 Score: 266
Period size: 57 Copynumber: 2.6 Consensus size: 57
70222455 CGATTGAATG
70222465 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTAC-TAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACAT-AAATTTGT
*
70222522 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACATAAATTTGT
*
70222579 TTAAATTTATTTCTAAAATACATTACTTACTAAAAT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAAT
70222615 TTGTTTAAAT
Statistics
Matches: 90, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
57 89 0.99
58 1 0.01
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (57 bp):
TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACATAAATTTGT
Found at i:70222610 original size:97 final size:97
Alignment explanation
Indices: 70222494--70222805 Score: 518
Period size: 97 Copynumber: 3.2 Consensus size: 97
70222484 ACATTACTTA
*
70222494 CTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
70222559 CATTACTTAC-ATAAATTTGTTTAAATTTATTT
66 CATTACTTACTA-AAATTTGTTTAAATTTATTT
70222591 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
70222656 CATTACTTACTAAAATTTGTTTAAATTTATTAATT
66 CATTACTTACTAAAATTTGTTTAAATTTA-T--TT
*
70222691 ACTTAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAAT
1 -CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAAT
*
70222756 ACATTACTTACTAAAATTTGTTTAAATTTATTA
65 ACATTACTTACTAAAATTTGTTTAAATTTATTT
* **
70222789 CTTAAATATGTTACTTA
1 CTAAAATACATTACTTA
70222806 AATTTATTAC
Statistics
Matches: 205, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
97 106 0.52
98 3 0.01
100 3 0.01
101 93 0.45
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (97 bp):
CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
CATTACTTACTAAAATTTGTTTAAATTTATTT
Found at i:70222652 original size:57 final size:60
Alignment explanation
Indices: 70222591--70222715 Score: 211
Period size: 57 Copynumber: 2.1 Consensus size: 60
70222581 AAATTTATTT
70222591 CTAAAATACATTACTTACTAAAATTTGTTTAAA-T-TT-ATTACTAAAATACATTACTTA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTATTAATTACTAAAATACATTACTTA
*
70222648 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTAATTACTTAAATACATTACTTA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAA-TTATTAATTACTAAAATACATTACTTA
70222709 CTAAAAT
1 CTAAAAT
70222716 TTGTTTAAAT
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
57 33 0.52
59 1 0.02
60 2 0.03
61 27 0.43
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (60 bp):
CTAAAATACATTACTTACTAAAATTTGTTTAAATTATTAATTACTAAAATACATTACTTA
Found at i:70222723 original size:101 final size:100
Alignment explanation
Indices: 70222486--70222788 Score: 533
Period size: 101 Copynumber: 3.0 Consensus size: 100
70222476 ACTAAAATAC
*
70222486 ATTACTTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTA
1 ATTA-TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTA
70222551 CTAAAATACATTACTTAC-ATAAATTTGTTTAAATTT
65 CTAAAATACATTACTTACTA-AAATTTGTTTAAATTT
70222587 A-T-TT-CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTAC
1 ATTATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTAC
70222649 TAAAATACATTACTTACTAAAATTTGTTTAAATTT
66 TAAAATACATTACTTACTAAAATTTGTTTAAATTT
*
70222684 ATTAATTACTTAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTA
1 ATT-ATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTA
70222749 CTAAAATACATTACTTACTAAAATTTGTTTAAATTT
65 CTAAAATACATTACTTACTAAAATTTGTTTAAATTT
70222785 ATTA
1 ATTA
70222789 CTTAAATATG
Statistics
Matches: 195, Mismatches: 2, Indels: 11
0.94 0.01 0.05
Matches are distributed among these distances:
97 91 0.47
98 4 0.02
100 4 0.02
101 96 0.49
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (100 bp):
ATTATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTAC
TAAAATACATTACTTACTAAAATTTGTTTAAATTT
Found at i:70222732 original size:40 final size:43
Alignment explanation
Indices: 70222640--70222755 Score: 184
Period size: 44 Copynumber: 2.7 Consensus size: 43
70222630 ACTAAAATAC
*
70222640 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTT
1 ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAA-TT
*
70222684 ATTAATTACTTAAATACATTACTTACTAAAATTTGTTTAAA-T
1 ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAATT
70222726 -TT-ATTACTAAAATACATTACTTACTAAAAT
1 ATTAATTACTAAAATACATTACTTACTAAAAT
70222756 ACATTACTTA
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
40 27 0.39
41 2 0.03
42 1 0.01
44 39 0.57
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (43 bp):
ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAATT
Found at i:70222759 original size:57 final size:57
Alignment explanation
Indices: 70222684--70222805 Score: 199
Period size: 57 Copynumber: 2.1 Consensus size: 57
70222674 GTTTAAATTT
* *
70222684 ATTAATTACTTAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATAC
1 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATAC
* *
70222741 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTTAAATAT
1 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATAC
*
70222798 GTTACTTA
1 ATTACTTA
70222806 AATTTATTAC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.45
Consensus pattern (57 bp):
ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATAC
Found at i:70222795 original size:13 final size:13
Alignment explanation
Indices: 70222777--70222847 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
70222767 TAAAATTTGT
70222777 TTAAATTTATTAC
1 TTAAATTTATTAC
* *
70222790 TTAAATATGTTAC
1 TTAAATTTATTAC
70222803 TTAAATTTATTAC
1 TTAAATTTATTAC
* *
70222816 TTAAATATGTTAC
1 TTAAATTTATTAC
70222829 TTAAATTTATTAC
1 TTAAATTTATTAC
70222842 TTAAAT
1 TTAAAT
70222848 AATTATAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (13 bp):
TTAAATTTATTAC
Found at i:70222813 original size:26 final size:26
Alignment explanation
Indices: 70222777--70222848 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
70222767 TAAAATTTGT
70222777 TTAAATTTATTACTTAAATATGTTAC
1 TTAAATTTATTACTTAAATATGTTAC
70222803 TTAAATTTATTACTTAAATATGTTAC
1 TTAAATTTATTACTTAAATATGTTAC
70222829 TTAAATTTATTACTTAAATA
1 TTAAATTTATTACTTAAATA
70222849 ATTATAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (26 bp):
TTAAATTTATTACTTAAATATGTTAC
Found at i:70223077 original size:74 final size:74
Alignment explanation
Indices: 70222997--70223144 Score: 296
Period size: 74 Copynumber: 2.0 Consensus size: 74
70222987 AATAAAATAT
70222997 AAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
1 AAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
70223062 ATAATTATA
66 ATAATTATA
70223071 AAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
1 AAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
70223136 ATAATTATA
66 ATAATTATA
70223145 TTAGTAATGT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (74 bp):
AAAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTA
ATAATTATA
Found at i:70223223 original size:18 final size:18
Alignment explanation
Indices: 70223200--70223321 Score: 74
Period size: 18 Copynumber: 6.4 Consensus size: 18
70223190 AATAACTTAC
70223200 AACTTACATAATACATTT
1 AACTTACATAATACATTT
*
70223218 AACTTACATTACTTACA--T
1 AACTTACA-TA-ATACATTT
*
70223236 AA--TACATAATA-ACTTAC
1 AACTTACATAATACA-TT-T
70223253 AACTTACATAATACATTTAACTT
1 AACTTACATAATACA--T---TT
70223276 ACAACTTACATAATACATTT
1 --AACTTACATAATACATTT
* *
70223296 GACTGACATAATACATTT
1 AACTTACATAATACATTT
70223314 AACTTACA
1 AACTTACA
70223322 ACTTACACAA
Statistics
Matches: 80, Mismatches: 9, Indels: 30
0.67 0.08 0.25
Matches are distributed among these distances:
13 1 0.01
14 2 0.03
15 2 0.03
16 4 0.05
17 2 0.03
18 33 0.41
19 11 0.14
20 7 0.09
21 1 0.01
23 1 0.01
24 1 0.01
25 15 0.19
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:70223264 original size:26 final size:26
Alignment explanation
Indices: 70223181--70223792 Score: 914
Period size: 26 Copynumber: 24.1 Consensus size: 26
70223171 ATTTTATTAA
70223181 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223207 ATAATACAT-TTAACTTACATTACTTAC
1 ATAATACATAATAACTTACA--ACTTAC
70223234 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223260 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
70223285 ATAATAC---AT---TT--GACTGAC
1 ATAATACATAATAACTTACAACTTAC
*
70223303 ATAATACATT-TAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223328 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
70223354 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223380 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
70223406 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
70223432 ATAATACAT-TTAACTTGCAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223457 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
70223483 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223509 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
70223534 ACAATACATTATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
70223560 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223586 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
70223612 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
70223638 ATAATACAT-TTAACTTGCAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223663 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
70223689 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
70223715 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
70223740 ACAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
70223765 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
70223791 AT
1 AT
70223793 TTAACTTACA
Statistics
Matches: 534, Mismatches: 36, Indels: 32
0.89 0.06 0.05
Matches are distributed among these distances:
18 12 0.02
20 3 0.01
23 3 0.01
25 158 0.30
26 334 0.63
27 15 0.03
28 9 0.02
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (26 bp):
ATAATACATAATAACTTACAACTTAC
Found at i:70223462 original size:77 final size:78
Alignment explanation
Indices: 70223305--70223792 Score: 790
Period size: 77 Copynumber: 6.3 Consensus size: 78
70223295 TGACTGACAT
* * *
70223305 AATACAT-TTAACTTACAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAAC
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAAC
70223369 TTACAACTTACAC
66 TTACAACTTACAC
* *
70223382 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACAT-TTAAC
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAAC
*
70223446 TTGCAACTTACAC
66 TTACAACTTACAC
* *
70223459 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACAT-TTAAC
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAAC
70223523 TTACAACTTACAC
66 TTACAACTTACAC
*
70223536 AATACATTATAACTTACAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAAC
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAAC
*
70223601 TTACAACTTACAT
66 TTACAACTTACAC
* *
70223614 AATACATAATAACTTACAACTTACATAATACAT-TTAACTTGCAACTTACACAATACATAATAAC
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAAC
*
70223678 TTACAACTTACAT
66 TTACAACTTACAC
* *
70223691 AATACATAATAACTTACAACTTACATAATACAT-TTAACTTACAACTTACACAATACAT-TTAAC
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAAC
*
70223754 TTACAACTTACAT
66 TTACAACTTACAC
70223767 AATACATAATAACTTACAACTTACAT
1 AATACATAATAACTTACAACTTACAT
70223793 TTAACTTACA
Statistics
Matches: 395, Mismatches: 14, Indels: 5
0.95 0.03 0.01
Matches are distributed among these distances:
76 43 0.11
77 255 0.65
78 97 0.25
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (78 bp):
AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACACAATACATAATAAC
TTACAACTTACAC
Found at i:70223530 original size:206 final size:205
Alignment explanation
Indices: 70223183--70223791 Score: 1031
Period size: 206 Copynumber: 3.0 Consensus size: 205
70223173 TTTATTAAAT
* *
70223183 AATACATAATAACTTACAACTTACATAATACAT-TTAACTTACATTACTTACATAATACATAATA
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACA--ACTTACATAATACAT-TTA
* * * * *
70223247 ACTTACAACTTACATAATACAT-TTAACTTACAACTTACATAATAC---AT---TT--GACTGAC
63 ACTTGCAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTAC
70223303 ATAATACATTTAACTTACAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAA
128 ATAATACATTTAACTTACAACTTACACAATACAT-ATAACTTACAACTTACATAATACATAATAA
70223368 CTTACAACTTACAC
192 CTTACAACTTACAC
70223382 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
70223447 TGCAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATA
66 TGCAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATA
70223512 ATACATTTAACTTACAACTTACACAATACATTATAACTTACAACTTACATAATACATAATAACTT
131 ATACATTTAACTTACAACTTACACAATACA-TATAACTTACAACTTACATAATACATAATAACTT
70223577 ACAACTTACAC
195 ACAACTTACAC
70223588 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
70223653 TGCAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATA
66 TGCAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATA
*
70223718 ATACATTTAACTTACAACTTACACAATACATTTAACTTACAACTTACATAATACATAATAACTTA
131 ATACATTTAACTTACAACTTACACAATACATATAACTTACAACTTACATAATACATAATAACTTA
70223783 CAACTTACA
196 CAACTTACA
70223792 TTTAACTTAC
Statistics
Matches: 391, Mismatches: 8, Indels: 16
0.94 0.02 0.04
Matches are distributed among these distances:
197 22 0.06
198 37 0.09
199 33 0.08
200 9 0.02
201 2 0.01
204 2 0.01
205 43 0.11
206 242 0.62
207 1 0.00
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.32
Consensus pattern (205 bp):
AATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
TGCAACTTACACAATACATAATAACTTACAACTTACATAATACATAATAACTTACAACTTACATA
ATACATTTAACTTACAACTTACACAATACATATAACTTACAACTTACATAATACATAATAACTTA
CAACTTACAC
Found at i:70223639 original size:19 final size:19
Alignment explanation
Indices: 70223487--70223617 Score: 81
Period size: 19 Copynumber: 7.5 Consensus size: 19
70223477 ACTTACATAA
70223487 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
*
70223506 TACATAAT-ACATT-TAACT
1 TACATAATAAC-TTACAACT
* *
70223524 TACA-ACTTAC--ACAA--
1 TACATAATAACTTACAACT
*
70223538 TACATTATAACTTACAACT
1 TACATAATAACTTACAACT
* *
70223557 TACATAAT-ACATAATAACT
1 TACATAATAAC-TTACAACT
* *
70223576 TACA-ACTTAC--ACAA--
1 TACATAATAACTTACAACT
70223590 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
70223609 TACATAATA
1 TACATAATA
70223618 CATAATAACT
Statistics
Matches: 84, Mismatches: 13, Indels: 30
0.66 0.10 0.24
Matches are distributed among these distances:
14 8 0.10
15 7 0.08
16 5 0.06
17 10 0.12
18 16 0.19
19 38 0.45
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (19 bp):
TACATAATAACTTACAACT
Found at i:70223800 original size:11 final size:10
Alignment explanation
Indices: 70223784--70223837 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
70223774 AATAACTTAC
70223784 AACTTACATTT
1 AACTTACA-TT
70223795 AACTTACA-T
1 AACTTACATT
70223804 AA--TACATTT
1 AACTTACA-TT
70223813 AACTTACA-T
1 AACTTACATT
70223822 AACTTACA-T
1 AACTTACATT
70223831 AACTTAC
1 AACTTAC
70223838 CATTGCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.10
9 23 0.59
11 12 0.31
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (10 bp):
AACTTACATT
Found at i:70223821 original size:18 final size:18
Alignment explanation
Indices: 70223758--70223823 Score: 89
Period size: 18 Copynumber: 3.6 Consensus size: 18
70223748 TTTAACTTAC
*
70223758 AACTTACATAATACATAAT
1 AACTTACATAATACAT-TT
*
70223777 AACTTACA-ACTTACATTT
1 AACTTACATA-ATACATTT
70223795 AACTTACATAATACATTT
1 AACTTACATAATACATTT
70223813 AACTTACATAA
1 AACTTACATAA
70223824 CTTACATAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
18 28 0.67
19 14 0.33
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:70223833 original size:18 final size:18
Alignment explanation
Indices: 70223673--70223837 Score: 69
Period size: 18 Copynumber: 9.5 Consensus size: 18
70223663 ACAATACATA
70223673 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
*
70223689 ATAATACATA-ATAACTTAC
1 AT-A-ACTTACATAACTTAC
70223708 --AACTTACATAA--TAC
1 ATAACTTACATAACTTAC
70223722 ATTTAACTTAC--AACTTAC
1 A--TAACTTACATAACTTAC
*
70223740 ACAA--TACATTTAACTTAC
1 ATAACTTACA--TAACTTAC
*
70223758 --AACTTACATAATACATA-
1 ATAACTTACAT-A-ACTTAC
70223775 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
70223791 ATTTAACTTACATAA--TAC
1 A--TAACTTACATAACTTAC
70223809 ATTTAACTTACATAACTTAC
1 A--TAACTTACATAACTTAC
70223829 ATAACTTAC
1 ATAACTTAC
70223838 CATTGCAATT
Statistics
Matches: 116, Mismatches: 5, Indels: 54
0.66 0.03 0.31
Matches are distributed among these distances:
14 6 0.05
15 8 0.07
16 16 0.14
17 2 0.02
18 64 0.55
19 14 0.12
20 6 0.05
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAACTTACATAACTTAC
Found at i:70229314 original size:21 final size:21
Alignment explanation
Indices: 70229288--70229358 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
70229278 CTACAACTTA
* *
70229288 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* *
70229309 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
70229330 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGGG
70229351 AAGCAGAG
1 AAGCAGAG
70229359 CAGAGCAAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.45, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:70229601 original size:14 final size:14
Alignment explanation
Indices: 70229582--70229615 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
70229572 ATTGCTATTG
70229582 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
70229596 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
70229610 TTTGCT
1 GTTGCT
70229616 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:70229732 original size:40 final size:41
Alignment explanation
Indices: 70229682--70230013 Score: 189
Period size: 42 Copynumber: 7.9 Consensus size: 41
70229672 GTTTTTGTAT
* * *
70229682 AAAAGCGCCACTAAAGAACATGTTCTTTTGCGGCGTTTG-T
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAA
* *
70229722 AAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGAAAA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTG--AA
* * ***
70229766 AAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTCCC
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTGAA
** * * ***
70229808 TTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTGAA
** * * ***
70229850 CTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTGAA
** * * * * * ***
70229892 CTAAGCGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGC-GTTTGAA
* * ***
70229934 ACAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCG-TTTGAA
** * * *
70229976 CTAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTT
70230014 TTTTCTAAGC
Statistics
Matches: 252, Mismatches: 34, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
40 32 0.13
41 6 0.02
42 180 0.71
44 34 0.13
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (41 bp):
AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGTTTGAA
Found at i:70229835 original size:42 final size:42
Alignment explanation
Indices: 70229771--70230057 Score: 452
Period size: 42 Copynumber: 6.8 Consensus size: 42
70229761 GAAAAAAAAA
* **
70229771 CGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTCCCTTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTC-TAAG
70229813 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
70229855 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
* * * *
70229897 CGCCGCTAAAGAACATGGTCTTTAGTGGCATTTTTTTAC-AAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTT-CTAAG
70229939 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
*
70229981 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
* *
70230023 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTT
70230058 GTTTGTAAAC
Statistics
Matches: 228, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
41 1 0.00
42 221 0.97
43 6 0.03
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:70230575 original size:27 final size:27
Alignment explanation
Indices: 70230521--70231002 Score: 454
Period size: 27 Copynumber: 17.9 Consensus size: 27
70230511 ACACATCAGG
* * * *
70230521 AAAGGAATCCTTTATTGCTAACACTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
** * *
70230548 AAATAAAGCTTTTGTGGCTAACTTTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
*
70230575 AAAGGAAGCCTTTGTGGCTAACACTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
*
70230602 AAAGGAAGCCTTTATGGCTAACTCTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
* * * *
70230629 AAAGGAAGACTTTGCGGCGAACTTTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
*
70230656 AAAAGAAGCCTTTGTGG-TGAACAT-TGA
1 AAAGGAAGCCTTTGTGGCT-AAC-TCTGA
* *
70230683 AAAGAAAGCCTTTGTGG-TGAACACTGA
1 AAAGGAAGCCTTTGTGGCT-AACTCTGA
* * *
70230710 AAATGAAGTCTTTGTGGCTAACTATGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
*
70230737 AAAGGAAGCCTTTGTAG-TGAACAT-TGA
1 AAAGGAAGCCTTTGTGGCT-AAC-TCTGA
**
70230764 AAAGGAAGCCTTTACGGCTAACTCTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
* * * *
70230791 AAATGAAGCATTTGTGGCTAACTTTAA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
* * *
70230818 AAAGTAAGCCTTTGTGG-TGAACACTAA
1 AAAGGAAGCCTTTGTGGCT-AACTCTGA
* * * * *
70230845 AAAAGAAGTCTTTATGGCGAACACTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
* * *
70230872 AAAGAAAGCATTTGTCGCTAACTCTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
*
70230899 AAAGGAAGCCTTTGTGGCTAACTCTAA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
* * *
70230926 AAAGGAAACTTTTGTGGCTAACTCTAA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
* *
70230953 AAAGGAAGCCTTTGTGGCGAACACTGA
1 AAAGGAAGCCTTTGTGGCTAACTCTGA
* *
70230980 AAAGGGAGCCTTTGTGGCAAACT
1 AAAGGAAGCCTTTGTGGCTAACT
70231003 TCGAAGGAAT
Statistics
Matches: 368, Mismatches: 77, Indels: 20
0.79 0.17 0.04
Matches are distributed among these distances:
26 3 0.01
27 361 0.98
28 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (27 bp):
AAAGGAAGCCTTTGTGGCTAACTCTGA
Found at i:70230656 original size:81 final size:81
Alignment explanation
Indices: 70230521--70230996 Score: 512
Period size: 81 Copynumber: 5.9 Consensus size: 81
70230511 ACACATCAGG
* * ** *
70230521 AAAGGAATCCTTTATTGCTAACACTGAAAATAAAGCTTTTGTGGCTAACTTTGAAAAGGAAGCCT
1 AAAGGAAGCCTTTATGGCTAACACTGAAAAGGAAGCATTTGTGGCTAACTTTGAAAAGGAAGCCT
70230586 TTGTGGCT-AACACTGA
66 TTGTGG-TGAACACTGA
* * * *
70230602 AAAGGAAGCCTTTATGGCTAACTCTGAAAAGGAAG-ACTTTGCGGCGAACTTTGAAAAAGAAGCC
1 AAAGGAAGCCTTTATGGCTAACACTGAAAAGGAAGCA-TTTGTGGCTAACTTTGAAAAGGAAGCC
*
70230666 TTTGTGGTGAACATTGA
65 TTTGTGGTGAACACTGA
* * * *
70230683 AAAGAAAGCCTTTGTGG-TGAACACTGAAAATGAAGTC-TTTGTGGCTAACTATGAAAAGGAAGC
1 AAAGGAAGCCTTTATGGCT-AACACTGAAAAGGAAG-CATTTGTGGCTAACTTTGAAAAGGAAGC
* *
70230746 CTTTGTAGTGAACATTGA
64 CTTTGTGGTGAACACTGA
* * * * *
70230764 AAAGGAAGCCTTTACGGCTAACTCTGAAAATGAAGCATTTGTGGCTAACTTTAAAAAGTAAGCCT
1 AAAGGAAGCCTTTATGGCTAACACTGAAAAGGAAGCATTTGTGGCTAACTTTGAAAAGGAAGCCT
*
70230829 TTGTGGTGAACACTAA
66 TTGTGGTGAACACTGA
* * * * * *
70230845 AAAAGAAGTCTTTATGGCGAACACTGAAAAGAAAGCATTTGTCGCTAACTCTGAAAAGGAAGCCT
1 AAAGGAAGCCTTTATGGCTAACACTGAAAAGGAAGCATTTGTGGCTAACTTTGAAAAGGAAGCCT
* *
70230910 TTGTGGCT-AACTCTAA
66 TTGTGG-TGAACACTGA
* * * * * * * ** *
70230926 AAAGGAAACTTTTGTGGCTAACTCTAAAAAGGAAGCCTTTGTGGCGAACACTGAAAAGGGAGCCT
1 AAAGGAAGCCTTTATGGCTAACACTGAAAAGGAAGCATTTGTGGCTAACTTTGAAAAGGAAGCCT
70230991 TTGTGG
66 TTGTGG
70230997 CAAACTTCGA
Statistics
Matches: 332, Mismatches: 55, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
80 3 0.01
81 327 0.98
82 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.26
Consensus pattern (81 bp):
AAAGGAAGCCTTTATGGCTAACACTGAAAAGGAAGCATTTGTGGCTAACTTTGAAAAGGAAGCCT
TTGTGGTGAACACTGA
Found at i:70231016 original size:27 final size:27
Alignment explanation
Indices: 70230986--70231051 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
70230976 CTGAAAAGGG
70230986 AGCCTTTGTGGCAAACTTC-GAAG-GAAT
1 AGCCTTTGTGGCAAA-TTCTGAAGTG-AT
* * * *
70231013 AGCCTCTATGGTAAATTCTGATGTGAT
1 AGCCTTTGTGGCAAATTCTGAAGTGAT
70231040 AGCCTTTGTGGC
1 AGCCTTTGTGGC
70231052 GTAATATGAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
26 3 0.10
27 26 0.87
28 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (27 bp):
AGCCTTTGTGGCAAATTCTGAAGTGAT
Found at i:70238047 original size:16 final size:16
Alignment explanation
Indices: 70238026--70238057 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
70238016 GTTTTGTTGC
*
70238026 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
70238042 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
70238058 CTTTCAACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:70238339 original size:51 final size:51
Alignment explanation
Indices: 70238275--70238475 Score: 257
Period size: 51 Copynumber: 4.0 Consensus size: 51
70238265 ATTAATGATA
* *
70238275 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTAT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTAT
* *
70238326 CCGATACACATAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTAT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTAT
* * *
70238377 CCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-T
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTAT
* * *
70238427 CTGGTACACGTAGTAGCCTGCACATAGTACTACACACGTAACCATCACT
1 CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
70238476 TTCACTTTCA
Statistics
Matches: 129, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
49 4 0.03
50 41 0.32
51 81 0.63
52 2 0.02
53 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (51 bp):
CCGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTAT
Found at i:70238491 original size:101 final size:102
Alignment explanation
Indices: 70238275--70238470 Score: 290
Period size: 102 Copynumber: 1.9 Consensus size: 102
70238265 ATTAATGATA
*
70238275 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACATAGT
1 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACATAGT
* *
70238340 AGCCTGCACATAGTACTACACACGTGATCGAAGCTAT
66 AGCCTGCACATAGTACTACACACGTGAACCAAGCTAT
* * * * *
70238377 CCGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAG
1 CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACATAG
70238440 TAGCCTGCACATAGTACTACACACGT-AACCA
65 TAGCCTGCACATAGTACTACACACGTGAACCA
70238471 TCACTTTCAC
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
100 3 0.04
101 37 0.44
102 41 0.48
103 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (102 bp):
CCGGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACATAGT
AGCCTGCACATAGTACTACACACGTGAACCAAGCTAT
Found at i:70245059 original size:51 final size:51
Alignment explanation
Indices: 70245001--70245192 Score: 192
Period size: 51 Copynumber: 3.8 Consensus size: 51
70244991 GATACTGATT
* * *
70245001 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCCCTATCCGATA
1 CACATAGTAGCCTACACATAGTACTACACACGTGACCATCCCTATCCGGTA
* **
70245052 CACATAGTAGCCTACACATAGTACTACACACGTGATCGA-AGCTATCCGGTA
1 CACATAGTAGCCTACACATAGTACTACACACGTGA-CCATCCCTATCCGGTA
* * * * * *
70245103 CGCATTGTAGCCTACACATAGTACTACACATGCGACCTAT-CAT-TCTGGTA
1 CACATAGTAGCCTACACATAGTACTACACACGTGACC-ATCCCTATCCGGTA
* * ** *
70245153 CACGTAGTAGCCTGCACATAGCCCTACACACGTAACCATC
1 CACATAGTAGCCTACACATAGTACTACACACGTGACCATC
70245193 ACTTTCACTT
Statistics
Matches: 114, Mismatches: 23, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
49 2 0.02
50 35 0.31
51 75 0.66
52 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.23
Consensus pattern (51 bp):
CACATAGTAGCCTACACATAGTACTACACACGTGACCATCCCTATCCGGTA
Found at i:70247411 original size:51 final size:53
Alignment explanation
Indices: 70247327--70247465 Score: 156
Period size: 51 Copynumber: 2.6 Consensus size: 53
70247317 CATGGCAAGA
* * * * *
70247327 AGACTATATAGTGTAAGACCTAGTCTTAAACTATGATATCAAATAGGGG-AA-
1 AGACCATATAGTGTAAGACCTAATCTGAGACTATGACATCAAATAGGGGAAAG
* * * *
70247378 ATACCATATAGTGTAAGACCTAATCTGAGACTATGGCATCATATGGGGGAAAAG
1 AGACCATATAGTGTAAGACCTAATCTGAGACTATGACATCAAATAGGGG-AAAG
* *
70247432 AGACCATATAGTGTAAGACCTATTCTGGGACTAT
1 AGACCATATAGTGTAAGACCTAATCTGAGACTAT
70247466 CATGTCATGT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
51 40 0.55
53 2 0.03
54 31 0.42
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (53 bp):
AGACCATATAGTGTAAGACCTAATCTGAGACTATGACATCAAATAGGGGAAAG
Found at i:70250241 original size:37 final size:37
Alignment explanation
Indices: 70250161--70250243 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 37
70250151 TAAATAATGT
* * * *
70250161 TCAGTTAAGCTTTATTCGGTTTACCAGTAGGTATCGC
1 TCAGTTGAGCTTTAGTCAGTATACCAGTAGGTATCGC
*
70250198 TCAGTTGAGCTTTAGTCAGTATATCAGTAGGTGAT-GC
1 TCAGTTGAGCTTTAGTCAGTATACCAGTAGGT-ATCGC
70250235 TCAGTTGAG
1 TCAGTTGAG
70250244 TAATACTCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 38 0.95
38 2 0.05
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (37 bp):
TCAGTTGAGCTTTAGTCAGTATACCAGTAGGTATCGC
Found at i:70251445 original size:21 final size:20
Alignment explanation
Indices: 70251399--70251446 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
70251389 CACGTGCTGC
**
70251399 TCACACGGGTGTGTGTCCCT
1 TCACACGGGCATGTGTCCCT
*
70251419 TCCACACGGGCATGTGTAGCCT
1 T-CACACGGGCATGTGT-CCCT
70251441 TCACAC
1 TCACAC
70251447 AGCCTGGGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 18 0.78
22 4 0.17
ACGTcount: A:0.17, C:0.33, G:0.25, T:0.25
Consensus pattern (20 bp):
TCACACGGGCATGTGTCCCT
Found at i:70260042 original size:38 final size:35
Alignment explanation
Indices: 70259991--70260067 Score: 118
Period size: 35 Copynumber: 2.1 Consensus size: 35
70259981 AGACGTTAGC
70259991 TTTTTCCTTTTCTCTTTTTTTTTTATTAATTTTTTTGG
1 TTTTTCCTTTTCTC---TTTTTTTATTAATTTTTTTGG
*
70260029 TTTTTTCTTTTCTCTTTTTTTATTAATTTTTTTGG
1 TTTTTCCTTTTCTCTTTTTTTATTAATTTTTTTGG
70260064 TTTT
1 TTTT
70260068 CTTGTCAGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
35 25 0.66
38 13 0.34
ACGTcount: A:0.08, C:0.09, G:0.05, T:0.78
Consensus pattern (35 bp):
TTTTTCCTTTTCTCTTTTTTTATTAATTTTTTTGG
Found at i:70269509 original size:14 final size:14
Alignment explanation
Indices: 70269490--70269519 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70269480 CTATAGTGAT
70269490 AGAGACAAGTACAA
1 AGAGACAAGTACAA
70269504 AGAGACAAGTACAA
1 AGAGACAAGTACAA
70269518 AG
1 AG
70269520 TATTGCACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.13, G:0.23, T:0.07
Consensus pattern (14 bp):
AGAGACAAGTACAA
Found at i:70269925 original size:39 final size:39
Alignment explanation
Indices: 70269874--70269987 Score: 178
Period size: 39 Copynumber: 2.9 Consensus size: 39
70269864 AAAATTCGGT
*
70269874 TAATTACTCAACCCAATAAAACTAAAACTAAAGTCTA-C
1 TAATTACCCAACCCAATAAAACTAAAACTAAAGTCTACC
*
70269912 TAAATTACCCAACCCAATAAAACTAAAACTAAAGTCCACC
1 T-AATTACCCAACCCAATAAAACTAAAACTAAAGTCTACC
*
70269952 TAATTA-CCAACCCAATAAAAATAAAACTAAAGTCTA
1 TAATTACCCAACCCAATAAAACTAAAACTAAAGTCTA
70269988 ACTCTTAAGT
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
38 29 0.41
39 39 0.56
40 2 0.03
ACGTcount: A:0.52, C:0.25, G:0.03, T:0.21
Consensus pattern (39 bp):
TAATTACCCAACCCAATAAAACTAAAACTAAAGTCTACC
Found at i:70270194 original size:9 final size:9
Alignment explanation
Indices: 70270180--70270212 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
70270170 GTAGTGATTC
70270180 AATTCGAGT
1 AATTCGAGT
70270189 AATTCGAGT
1 AATTCGAGT
70270198 AATTCG-GTT
1 AATTCGAG-T
70270207 AATTCG
1 AATTCG
70270213 GTTAATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 1 0.04
9 22 0.96
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.36
Consensus pattern (9 bp):
AATTCGAGT
Found at i:70270774 original size:21 final size:20
Alignment explanation
Indices: 70270734--70270774 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70270724 TTCTTTAGCT
*
70270734 TAGAAACAATTCTTTTAAAA
1 TAGAAACAATTCTATTAAAA
*
70270754 TAGAAGCAATTCCTATTAAAA
1 TAGAAACAATT-CTATTAAAA
70270775 ATTTATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (20 bp):
TAGAAACAATTCTATTAAAA
Found at i:70274936 original size:21 final size:20
Alignment explanation
Indices: 70274912--70274951 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
70274902 ACTTAACACT
70274912 TAATCACTATTTTGAAATTTC
1 TAATCACTATTTT-AAATTTC
* *
70274933 TAATTACTCTTTTAAATTT
1 TAATCACTATTTTAAATTT
70274952 TATATTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.53
Consensus pattern (20 bp):
TAATCACTATTTTAAATTTC
Found at i:70279078 original size:66 final size:66
Alignment explanation
Indices: 70278961--70279093 Score: 178
Period size: 66 Copynumber: 2.0 Consensus size: 66
70278951 TGATGAGCTT
* * **
70278961 AAAATGAGATGAAGTATATTCTTGCTTTACAATTCAATTAAAACAGGTAATTACAAGACCAAGGG
1 AAAATAAGATGAAGTATATTCTTGCTTGACAATTCAATTAAAACACATAATTACAAGACCAAGGG
70279026 A
66 A
* * * *
70279027 AAAATAAGATGAGGTATATTCTTGCCTTGA-AATTCAATTCAAACCCATAATTACAAGACTAAGG
1 AAAATAAGATGAAGTATATTCTTG-CTTGACAATTCAATTAAAACACATAATTACAAGACCAAGG
70279091 GA
65 GA
70279093 A
1 A
70279094 CCATTATCAT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 54 0.93
67 4 0.07
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (66 bp):
AAAATAAGATGAAGTATATTCTTGCTTGACAATTCAATTAAAACACATAATTACAAGACCAAGGG
A
Found at i:70286169 original size:20 final size:20
Alignment explanation
Indices: 70286137--70286174 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70286127 ATTGAATTTT
*
70286137 ATTTAAAATTAATCATAACG
1 ATTTAAAATTAATAATAACG
70286157 ATTTACAAA-TAATAATAA
1 ATTTA-AAATTAATAATAA
70286175 ACAAGATTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
ATTTAAAATTAATAATAACG
Found at i:70294358 original size:294 final size:294
Alignment explanation
Indices: 70293829--70294417 Score: 1178
Period size: 294 Copynumber: 2.0 Consensus size: 294
70293819 ATTCCAACTC
70293829 AGTGTGGGAACTTGTAGACTTATCGGAAGGGATAAAACCCATTATCTACAAGATGAAAAGAAATG
1 AGTGTGGGAACTTGTAGACTTATCGGAAGGGATAAAACCCATTATCTACAAGATGAAAAGAAATG
70293894 CATATGGAAAACTGGAAACTTATAAAGCCGGACTTGTAGCAAAAGGTTATACTAAAAAATAAGGT
66 CATATGGAAAACTGGAAACTTATAAAGCCGGACTTGTAGCAAAAGGTTATACTAAAAAATAAGGT
70293959 ACTAATTACGAAGAAACCTTATCTCTGATTGCCATGCTCAACTCAATATACATATTGTTATTCGT
131 ACTAATTACGAAGAAACCTTATCTCTGATTGCCATGCTCAACTCAATATACATATTGTTATTCGT
70294024 TATGGCGATTCATGATCACGAGATCTGGCAAATGGATTTCAAGACAACGTTTTTGAACGGCTATC
196 TATGGCGATTCATGATCACGAGATCTGGCAAATGGATTTCAAGACAACGTTTTTGAACGGCTATC
70294089 TTGAAGAGAGCATTTATATGTTACAACCCAACAA
261 TTGAAGAGAGCATTTATATGTTACAACCCAACAA
70294123 AGTGTGGGAACTTGTAGACTTATCGGAAGGGATAAAACCCATTATCTACAAGATGAAAAGAAATG
1 AGTGTGGGAACTTGTAGACTTATCGGAAGGGATAAAACCCATTATCTACAAGATGAAAAGAAATG
70294188 CATATGGAAAACTGGAAACTTATAAAGCCGGACTTGTAGCAAAAGGTTATACTAAAAAATAAGGT
66 CATATGGAAAACTGGAAACTTATAAAGCCGGACTTGTAGCAAAAGGTTATACTAAAAAATAAGGT
70294253 ACTAATTACGAAGAAACCTTATCTCTGATTGCCATGCTCAACTCAATATACATATTGTTATTCGT
131 ACTAATTACGAAGAAACCTTATCTCTGATTGCCATGCTCAACTCAATATACATATTGTTATTCGT
70294318 TATGGCGATTCATGATCACGAGATCTGGCAAATGGATTTCAAGACAACGTTTTTGAACGGCTATC
196 TATGGCGATTCATGATCACGAGATCTGGCAAATGGATTTCAAGACAACGTTTTTGAACGGCTATC
70294383 TTGAAGAGAGCATTTATATGTTACAACCCAACAA
261 TTGAAGAGAGCATTTATATGTTACAACCCAACAA
70294417 A
1 A
70294418 TATATAGCTG
Statistics
Matches: 295, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
294 295 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (294 bp):
AGTGTGGGAACTTGTAGACTTATCGGAAGGGATAAAACCCATTATCTACAAGATGAAAAGAAATG
CATATGGAAAACTGGAAACTTATAAAGCCGGACTTGTAGCAAAAGGTTATACTAAAAAATAAGGT
ACTAATTACGAAGAAACCTTATCTCTGATTGCCATGCTCAACTCAATATACATATTGTTATTCGT
TATGGCGATTCATGATCACGAGATCTGGCAAATGGATTTCAAGACAACGTTTTTGAACGGCTATC
TTGAAGAGAGCATTTATATGTTACAACCCAACAA
Found at i:70296740 original size:57 final size:58
Alignment explanation
Indices: 70296640--70296760 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
70296630 ATAAAAATGG
* * ** *
70296640 TGAAAGTGGAGAAATGGAAAACATTTGGAAATGGTTATGGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATAGAAAACATTTGGAAATGAATATAGTTTTCTCCAAAATGAAAA
* *
70296698 TGAAAATGGAGAAATAGAATA-ATTTGGAAATGAATGTAGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAATAGAAAACATTTGGAAATGAATATAGTTTTCTCCAAAATGAAAA
*
70296755 TTAAAA
1 TGAAAA
70296761 ATGAAAATGA
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
57 37 0.67
58 18 0.33
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.28
Consensus pattern (58 bp):
TGAAAATGGAGAAATAGAAAACATTTGGAAATGAATATAGTTTTCTCCAAAATGAAAA
Found at i:70297703 original size:10 final size:10
Alignment explanation
Indices: 70297687--70297725 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
70297677 ATCAAATTTC
70297687 ATTAATTATT
1 ATTAATTATT
*
70297697 TTTAATTATT
1 ATTAATTATT
70297707 ATTAATCTGATT
1 ATTAAT-T-ATT
70297719 ATTAATT
1 ATTAATT
70297726 TAGTGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 14 0.56
11 2 0.08
12 9 0.36
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (10 bp):
ATTAATTATT
Found at i:70299085 original size:10 final size:10
Alignment explanation
Indices: 70299059--70299091 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
70299049 TTATTCCCAC
*
70299059 AAAGAAACAA
1 AAAGAAAAAA
70299069 AAA-AAAAAA
1 AAAGAAAAAA
70299078 AAAGAAAAAA
1 AAAGAAAAAA
70299088 AAAG
1 AAAG
70299092 GAGCATCTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:70302757 original size:21 final size:21
Alignment explanation
Indices: 70302732--70302772 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70302722 CTCAATTCTA
70302732 AATTCTCTCAATAAATTCGTC
1 AATTCTCTCAATAAATTCGTC
* *
70302753 AATTCTCTCGATAATTTCGT
1 AATTCTCTCAATAAATTCGT
70302773 TTCAAATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (21 bp):
AATTCTCTCAATAAATTCGTC
Found at i:70308905 original size:25 final size:26
Alignment explanation
Indices: 70308869--70308922 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
70308859 TAATTAGTAT
*
70308869 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
70308894 AAAA-ATTAAATAATTAAATAAAATTG
1 AAAATATT-AATAATTAAATAAAATTG
70308920 AAA
1 AAA
70308923 TTCAGGAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 3 0.12
25 14 0.54
26 9 0.35
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:70309887 original size:29 final size:30
Alignment explanation
Indices: 70309829--70309887 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
70309819 TGCCTTTGAA
* * *
70309829 AATATTTGCAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACAACTAAATTTT
70309859 AATATTTACAAAAAGAG-CAACTAAATTTT
1 AATATTTACAAAAAGAGACAACTAAATTTT
70309888 GAAAATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACTAAATTTT
Found at i:70314971 original size:27 final size:27
Alignment explanation
Indices: 70314938--70314993 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
70314928 AAGTGACTTA
*
70314938 TAAGTTTCGGGTCAATACTCTCTATAG
1 TAAGTTTCAGGTCAATACTCTCTATAG
*
70314965 TAAGTTTTAGGTCAATACTCTCTATAG
1 TAAGTTTCAGGTCAATACTCTCTATAG
70314992 TA
1 TA
70314994 TTGGTTTACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (27 bp):
TAAGTTTCAGGTCAATACTCTCTATAG
Found at i:70315778 original size:28 final size:28
Alignment explanation
Indices: 70315715--70315778 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
70315705 TGACAGTAAT
*
70315715 AGTAT-AGTGTGGGCCTTAGCCCAAAAC
1 AGTATCAGTGTGGGCCTAAGCCCAAAAC
* * * * *
70315742 AGAAACAGTGTGGGCCTAAGCTCGATAC
1 AGTATCAGTGTGGGCCTAAGCCCAAAAC
70315770 AGTATCAGT
1 AGTATCAGT
70315779 ATGGTGCAAG
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
27 3 0.11
28 25 0.89
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (28 bp):
AGTATCAGTGTGGGCCTAAGCCCAAAAC
Found at i:70316018 original size:32 final size:32
Alignment explanation
Indices: 70315963--70316040 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 32
70315953 GAATGCCTAC
* * *
70315963 AAGCCATAAGTA-TAGTAATATGATTGGCACA
1 AAGCCATTAGTAGCAGTAATATGATCGGCACA
*
70315994 AAGCCATTAGTAGCAGTGATATGATCGGCACA
1 AAGCCATTAGTAGCAGTAATATGATCGGCACA
* *
70316026 CAGTCATTAGTAGCA
1 AAGCCATTAGTAGCA
70316041 ACGCACCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 11 0.28
32 29 0.73
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24
Consensus pattern (32 bp):
AAGCCATTAGTAGCAGTAATATGATCGGCACA
Found at i:70316124 original size:27 final size:27
Alignment explanation
Indices: 70316086--70316139 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
70316076 AGCTGCTAGT
70316086 ATAGTATATGTGGCCA-AGCCACCAGTA
1 ATAGTATATGTGG-CAGAGCCACCAGTA
70316113 ATAGTGAT-TGTGGCAGAGCCACCAGTA
1 ATAGT-ATATGTGGCAGAGCCACCAGTA
70316140 CAGTACTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 2 0.08
27 21 0.84
28 2 0.08
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (27 bp):
ATAGTATATGTGGCAGAGCCACCAGTA
Found at i:70316237 original size:24 final size:24
Alignment explanation
Indices: 70316210--70316279 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 24
70316200 ATGCTCAGAG
*
70316210 TCAGTCATTCAAATCACAGACAAA
1 TCAGTCATTCAAAACACAGACAAA
* * *
70316234 TCAGTCATACAAAACATAAACAAA
1 TCAGTCATTCAAAACACAGACAAA
* * *
70316258 TAAGTCATT-TAACCACAGACAA
1 TCAGTCATTCAAAACACAGACAA
70316280 TTAAATCATT
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
23 9 0.25
24 27 0.75
ACGTcount: A:0.50, C:0.23, G:0.07, T:0.20
Consensus pattern (24 bp):
TCAGTCATTCAAAACACAGACAAA
Found at i:70316559 original size:27 final size:27
Alignment explanation
Indices: 70316299--70316558 Score: 305
Period size: 27 Copynumber: 9.7 Consensus size: 27
70316289 TTGACCTCGA
*
70316299 GGGTATTACGATCATTTTACCTTACAG
1 GGGTATTACGATCATTTTACCCTACAG
* * *
70316326 GGGCATTACGGTCATTTTACCCTA-AA
1 GGGTATTACGATCATTTTACCCTACAG
* *
70316352 GGGTA-TACGATCATTTTACCCTAAAA
1 GGGTATTACGATCATTTTACCCTACAG
*
70316378 GGGCATTACGATCATTTTACCCTACAG
1 GGGTATTACGATCATTTTACCCTACAG
*
70316405 GGGTATTAC-AGTCATTTTACCCTATAG
1 GGGTATTACGA-TCATTTTACCCTACAG
* * * *
70316432 AGGAATTA-TAGTCATTTTACCTTACAG
1 GGGTATTACGA-TCATTTTACCCTACAG
*
70316459 GGGCATTACGATCATTTTACCCTACAG
1 GGGTATTACGATCATTTTACCCTACAG
*
70316486 GGGTATTAC-AGTCATTTTACCCTACAA
1 GGGTATTACGA-TCATTTTACCCTACAG
* *
70316513 GGGCATTACGATCATTTTATCCTACAG
1 GGGTATTACGATCATTTTACCCTACAG
*
70316540 GGGTATTACGGTCATTTTA
1 GGGTATTACGATCATTTTA
70316559 TAAAATTTCC
Statistics
Matches: 200, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
25 17 0.09
26 13 0.06
27 168 0.84
28 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (27 bp):
GGGTATTACGATCATTTTACCCTACAG
Found at i:70317726 original size:8 final size:8
Alignment explanation
Indices: 70317713--70317742 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
70317703 GAGAGATACG
70317713 GCTTTTCA
1 GCTTTTCA
*
70317721 GCTTTTCG
1 GCTTTTCA
70317729 GCTTTTCA
1 GCTTTTCA
70317737 GCTTTT
1 GCTTTT
70317743 GCCAATTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.07, C:0.23, G:0.17, T:0.53
Consensus pattern (8 bp):
GCTTTTCA
Found at i:70317732 original size:16 final size:16
Alignment explanation
Indices: 70317711--70317742 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
70317701 GGGAGAGATA
70317711 CGGCTTTTCAGCTTTT
1 CGGCTTTTCAGCTTTT
70317727 CGGCTTTTCAGCTTTT
1 CGGCTTTTCAGCTTTT
70317743 GCCAATTCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.19, T:0.50
Consensus pattern (16 bp):
CGGCTTTTCAGCTTTT
Found at i:70320783 original size:55 final size:54
Alignment explanation
Indices: 70320688--70320837 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
70320678 CTACTTTGTT
* ** * *
70320688 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
70320742 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
70320797 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
70320838 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:70320800 original size:27 final size:27
Alignment explanation
Indices: 70320660--70320837 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
70320650 TAAATTGTAC
70320660 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
70320687 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
70320713 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
70320741 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
70320769 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
70320796 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
70320823 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70320838 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:70320801 original size:82 final size:81
Alignment explanation
Indices: 70320661--70320816 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
70320651 AAATTGTACA
* * * *
70320661 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
70320726 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
70320742 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
70320805 TGTGCGAGTTGA
63 TGTGCGAATTGA
70320817 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:70328753 original size:27 final size:27
Alignment explanation
Indices: 70328722--70328899 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70328712 TAAATTGTAC
70328722 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70328749 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70328775 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70328803 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70328831 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70328858 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70328885 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70328900 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70328836 original size:82 final size:81
Alignment explanation
Indices: 70328723--70328878 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70328713 AAATTGTACA
* *
70328723 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70328787 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70328804 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70328869 TGCGAGTTGA
65 TGCGAATTGA
70328879 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70328890 original size:82 final size:81
Alignment explanation
Indices: 70328719--70328899 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70328709 GATTAAATTG
* *
70328719 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70328784 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70328800 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70328864 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70328882 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70328900 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70340360 original size:42 final size:42
Alignment explanation
Indices: 70340301--70340384 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
70340291 GTTGCTAATT
70340301 TAACCCCCAACTACCTTAGATGATTAAACATGCACTGATTAA
1 TAACCCCCAACTACCTTAGATGATTAAACATGCACTGATTAA
70340343 TAACCCCCAACTACCTTAGATGATTAAACATGCACTGATTAA
1 TAACCCCCAACTACCTTAGATGATTAAACATGCACTGATTAA
70340385 GTATCGTGTC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (42 bp):
TAACCCCCAACTACCTTAGATGATTAAACATGCACTGATTAA
Found at i:70347538 original size:56 final size:56
Alignment explanation
Indices: 70347452--70347634 Score: 357
Period size: 56 Copynumber: 3.3 Consensus size: 56
70347442 ACAAGGGATG
*
70347452 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
70347508 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
70347564 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
70347620 ATGGGCAAAACATGT
1 ATGGGCAAAACATGT
70347635 TCCGACTTTG
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 126 1.00
ACGTcount: A:0.45, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:70355227 original size:40 final size:39
Alignment explanation
Indices: 70355196--70355405 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
70355186 GGACTAAGAT
* *
70355196 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
70355236 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
70355276 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
70355316 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
70355356 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
70355395 CCGAAGGCATT
1 CCGAAGGCATT
70355406 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:70355359 original size:120 final size:120
Alignment explanation
Indices: 70355143--70355405 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
70355133 TTGAATGCTG
* *
70355143 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
70355207 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
70355263 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
70355326 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
70355382 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
70355406 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:70355425 original size:79 final size:80
Alignment explanation
Indices: 70355144--70355440 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
70355134 TGAATGCTGT
* ** * * * **
70355144 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
70355207 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
70355224 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
70355288 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
70355304 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
70355368 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
70355383 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
70355441 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:70364519 original size:20 final size:20
Alignment explanation
Indices: 70364496--70364539 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
70364486 TAAAGAAAGT
*
70364496 AAATGC-AATGGAAAGTAATG
1 AAATGCAAATGGAAA-TAATA
70364516 AAATGCAAATGGAAATAATA
1 AAATGCAAATGGAAATAATA
70364536 AAAT
1 AAAT
70364540 TTGAAAGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.57, C:0.05, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATGCAAATGGAAATAATA
Found at i:70368609 original size:20 final size:20
Alignment explanation
Indices: 70368572--70368612 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70368562 GTTTCCATTG
* *
70368572 ATGTTAATTGAAGTTTTTGA
1 ATGTTAATGGAAGATTTTGA
*
70368592 ATGTTAATGGTAGATTTTGA
1 ATGTTAATGGAAGATTTTGA
70368612 A
1 A
70368613 GCTTAGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (20 bp):
ATGTTAATGGAAGATTTTGA
Found at i:70382309 original size:17 final size:17
Alignment explanation
Indices: 70382259--70382314 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
70382249 GCCTAATATT
70382259 CCCACACACCTGTGTGG
1 CCCACACACCTGTGTGG
** * *
70382276 TTCAC-C-CATGTGGGG
1 CCCACACACCTGTGTGG
70382291 CCCACACACCTGTGTGG
1 CCCACACACCTGTGTGG
70382308 CCCACAC
1 CCCACAC
70382315 GACCCAATTT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
15 10 0.34
16 2 0.07
17 17 0.59
ACGTcount: A:0.18, C:0.41, G:0.23, T:0.18
Consensus pattern (17 bp):
CCCACACACCTGTGTGG
Found at i:70387831 original size:78 final size:76
Alignment explanation
Indices: 70387739--70387904 Score: 296
Period size: 76 Copynumber: 2.2 Consensus size: 76
70387729 CATATATCAC
70387739 ATATCACATATTATTCACTTTAGCATGCTTTAATATATTTTCATATTAAATCATGGATCTCATCA
1 ATATCACATATTATTCACTTTAGCATGCTTTAATATATTTTC--ATTAAATCATGGATCTCATCA
70387804 TACAGATGTATAT
64 TACAGATGTATAT
*
70387817 ATATCACATATTATTCACTTTAGCATGCTTTAATATATTTTCATTAATTCATGGATCTCATCATA
1 ATATCACATATTATTCACTTTAGCATGCTTTAATATATTTTCATTAAATCATGGATCTCATCATA
70387882 CAGATGTATAT
66 CAGATGTATAT
*
70387893 ATAACACATATT
1 ATATCACATATT
70387905 TAAATCATCA
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
76 44 0.51
78 42 0.49
ACGTcount: A:0.35, C:0.16, G:0.07, T:0.42
Consensus pattern (76 bp):
ATATCACATATTATTCACTTTAGCATGCTTTAATATATTTTCATTAAATCATGGATCTCATCATA
CAGATGTATAT
Found at i:70393050 original size:40 final size:40
Alignment explanation
Indices: 70392966--70393190 Score: 249
Period size: 40 Copynumber: 5.7 Consensus size: 40
70392956 TTGAATGCTG
* * * * *
70392966 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
70393006 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70393046 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70393086 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
70393126 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
70393165 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
70393191 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.22
40 115 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70393103 original size:80 final size:79
Alignment explanation
Indices: 70392966--70393190 Score: 274
Period size: 80 Copynumber: 2.8 Consensus size: 79
70392956 TTGAATGCTG
* * * * *
70392966 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGA-T-ACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
70393029 TTGTGCGAGTTATTAAT
63 TTGTGCGAGTTATTAAA
* *
70393046 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTT
70393111 GTGCGAGTTATTAAA
65 GTGCGAGTTATTAAA
* * * * * *
70393126 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
70393191 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
79 39 0.31
80 76 0.60
81 10 0.08
82 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTATTAAA
Found at i:70393208 original size:79 final size:80
Alignment explanation
Indices: 70393019--70393223 Score: 200
Period size: 79 Copynumber: 2.6 Consensus size: 80
70393009 GGACTAAGAT
* ** * * * *
70393019 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTA
1 CCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTA
* *
70393084 AATCCGGGTTAAGTC
66 AAACCGGGCTAAGTC
** * * * * *
70393099 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTA
1 CCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTA
*
70393163 AAACCGGGCTATGTC
66 AAACCGGGCTAAGTC
* * *
70393178 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
70393224 TACGTGATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 15 0.14
79 48 0.45
80 44 0.41
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTA
AAACCGGGCTAAGTC
Found at i:70401983 original size:39 final size:39
Alignment explanation
Indices: 70401860--70401999 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 39
70401850 TGAATGCTGT
* * * * *
70401860 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGT-ATGAGTTACTATAA
* **
70401900 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-T-TAA
1 CCGGGCTAAG-TCCCGAAGGCA-TTGTATGAGTTACTATAA
*
70401938 TTCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 --CCGGGCTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
*
70401979 CCGGGCTATGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
70402000 CTTGAACGAG
Statistics
Matches: 80, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
38 2 0.03
39 31 0.39
40 39 0.49
41 8 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
Found at i:70414691 original size:24 final size:24
Alignment explanation
Indices: 70414664--70414715 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
70414654 AATCACAGTC
** *
70414664 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
70414688 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATACT
70414712 AAAT
1 AAAT
70414716 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:70417725 original size:5 final size:6
Alignment explanation
Indices: 70417695--70417728 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
70417685 AATGAAAAAT
**
70417695 AAGAAA AAGAAA AAGAAA GTGAAA AAGAAA AAGA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGA
70417729 GTGCGAGCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (6 bp):
AAGAAA
Found at i:70417761 original size:17 final size:16
Alignment explanation
Indices: 70417741--70417780 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
70417731 GCGAGCGAGA
70417741 AAATGAAAAAGAAAAAG
1 AAATGAAAAA-AAAAAG
*
70417758 AAATGAAAGAAAAAAG
1 AAATGAAAAAAAAAAG
70417774 AAGATGA
1 AA-ATGA
70417781 GCGTGAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.07
Consensus pattern (16 bp):
AAATGAAAAAAAAAAG
Found at i:70417789 original size:48 final size:48
Alignment explanation
Indices: 70417697--70417790 Score: 120
Period size: 48 Copynumber: 2.0 Consensus size: 48
70417687 TGAAAAATAA
* *
70417697 GAAAAAGAAAAAGAAAGTGAAAAAGAAAAAGAGTGCGAGCGAGAAAAT
1 GAAAAAGAAAAAGAAAGTGAAAAAAAAAAAGAGTGAGAGCGAGAAAAT
* *
70417745 GAAAAAGAAAAAGAAA-TGAAAGAAAAAAGAAGA-TGAGCGTGAGAAA
1 GAAAAAGAAAAAGAAAGTGAAA-AAAAAA-AAGAGTGAGAGCGAGAAA
70417791 GAAAAGAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 5 0.12
48 31 0.77
49 4 0.10
ACGTcount: A:0.64, C:0.03, G:0.27, T:0.06
Consensus pattern (48 bp):
GAAAAAGAAAAAGAAAGTGAAAAAAAAAAAGAGTGAGAGCGAGAAAAT
Found at i:70417811 original size:30 final size:31
Alignment explanation
Indices: 70417755--70417825 Score: 74
Period size: 30 Copynumber: 2.3 Consensus size: 31
70417745 GAAAAAGAAA
* *
70417755 AAGAAATG-AAAGAAAAAAGAAGATGAGCGTG
1 AAGAAA-GAAAAGAAAAAAGAAAATGAGAGTG
** *
70417786 -AGAAAGAAAAGAAAATTGAAAATGAGATTG
1 AAGAAAGAAAAGAAAAAAGAAAATGAGAGTG
70417816 AAGAAAGAAA
1 AAGAAAGAAA
70417826 TGAGAGTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
29 1 0.03
30 23 0.70
31 9 0.27
ACGTcount: A:0.62, C:0.01, G:0.25, T:0.11
Consensus pattern (31 bp):
AAGAAAGAAAAGAAAAAAGAAAATGAGAGTG
Found at i:70418140 original size:13 final size:13
Alignment explanation
Indices: 70418122--70418146 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70418112 TATTTTAATA
70418122 TTATTTTGTGTGT
1 TTATTTTGTGTGT
70418135 TTATTTTGTGTG
1 TTATTTTGTGTG
70418147 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:70419634 original size:41 final size:41
Alignment explanation
Indices: 70419583--70419729 Score: 217
Period size: 41 Copynumber: 3.6 Consensus size: 41
70419573 CAGACTTTAC
*
70419583 GTCTAGCAGGCTAAGTGCCGATGATCTGAAAT-AGGCTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTG-AATCAGGCTATAA
*
70419624 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
**
70419665 ACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
1 GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
*
70419706 G-CTTAGCAGGTTAAGTGCCGGTGA
1 GTC-TAGCAGGCTAAGTGCCGGTGA
70419730 ATATGTTAAA
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
40 4 0.04
41 93 0.96
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (41 bp):
GTCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAA
Found at i:70433787 original size:50 final size:50
Alignment explanation
Indices: 70433708--70433848 Score: 192
Period size: 50 Copynumber: 2.8 Consensus size: 50
70433698 CATTTGGGTA
70433708 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** * * *
70433758 AAGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * *
70433808 GAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
70433849 TAGTACAGGA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:70434155 original size:20 final size:20
Alignment explanation
Indices: 70434117--70434155 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
70434107 CAAGCAAGCA
*
70434117 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
70434137 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
70434156 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:70436505 original size:37 final size:37
Alignment explanation
Indices: 70436455--70436528 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
70436445 TCTCCCAACC
70436455 GAATTAATTTTGTTTTTGTGAAGTTTTTATGAGTACA
1 GAATTAATTTTGTTTTTGTGAAGTTTTTATGAGTACA
70436492 GAATTAATTTTGTTTTTGTGAAGTTTTTATGAGTACA
1 GAATTAATTTTGTTTTTGTGAAGTTTTTATGAGTACA
70436529 TGATAGAGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.51
Consensus pattern (37 bp):
GAATTAATTTTGTTTTTGTGAAGTTTTTATGAGTACA
Found at i:70436751 original size:27 final size:27
Alignment explanation
Indices: 70436713--70436774 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
70436703 ATATATTAAA
70436713 TATATTTTTTATTTTTAATCAAATATC
1 TATATTTTTTATTTTTAATCAAATATC
*
70436740 TATATTTTTTATTTTTAATCAAATATG
1 TATATTTTTTATTTTTAATCAAATATC
70436767 TATATTTT
1 TATATTTT
70436775 ATATATATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (27 bp):
TATATTTTTTATTTTTAATCAAATATC
Found at i:70441787 original size:14 final size:15
Alignment explanation
Indices: 70441744--70441800 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
70441734 AAATTGAAAT
*
70441744 TTAACTATTGAAAAA
1 TTAAGTATTGAAAAA
* *
70441759 GTTTA-TGTTGAAAAA
1 -TTAAGTATTGAAAAA
70441774 TTAAGTATTGAAAAA
1 TTAAGTATTGAAAAA
*
70441789 TTAAGTGTTGAA
1 TTAAGTATTGAA
70441801 TTTAAGTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 3 0.09
15 29 0.83
16 3 0.09
ACGTcount: A:0.46, C:0.02, G:0.16, T:0.37
Consensus pattern (15 bp):
TTAAGTATTGAAAAA
Found at i:70441798 original size:30 final size:30
Alignment explanation
Indices: 70441744--70441800 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
70441734 AAATTGAAAT
*
70441744 TTAACTATTGAAAAAGTTTATGTTGAAAAA
1 TTAACTATTGAAAAAGTTAATGTTGAAAAA
*
70441774 TTAAGTATTGAAAAA-TTAAGTGTTGAA
1 TTAACTATTGAAAAAGTTAA-TGTTGAA
70441801 TTTAAGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.46, C:0.02, G:0.16, T:0.37
Consensus pattern (30 bp):
TTAACTATTGAAAAAGTTAATGTTGAAAAA
Found at i:70449701 original size:9 final size:9
Alignment explanation
Indices: 70449687--70449715 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
70449677 GGTCTGCAGC
70449687 ATTAGTGGA
1 ATTAGTGGA
70449696 ATTAGTGGA
1 ATTAGTGGA
70449705 ATTAGTGGA
1 ATTAGTGGA
70449714 AT
1 AT
70449716 CTTGGGGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (9 bp):
ATTAGTGGA
Found at i:70452872 original size:35 final size:35
Alignment explanation
Indices: 70452799--70452872 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
70452789 TACATCTATT
* * *
70452799 GGTCCTTCGAGACGATACCATGCAAACAGTATATA
1 GGTCCTTCGAGACGACACCATGCAAACAGTAGACA
* * *
70452834 GGTCCTTCGGGGCGACACCATGCAAACGGTAGACA
1 GGTCCTTCGAGACGACACCATGCAAACAGTAGACA
70452869 GGTC
1 GGTC
70452873 TTTTAAGGAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.28, C:0.26, G:0.27, T:0.19
Consensus pattern (35 bp):
GGTCCTTCGAGACGACACCATGCAAACAGTAGACA
Found at i:70453529 original size:5 final size:5
Alignment explanation
Indices: 70453521--70453613 Score: 77
Period size: 5 Copynumber: 18.6 Consensus size: 5
70453511 ATTTAAAATA
*
70453521 TATAT TATAT TATAT TATAT TATAT TATAT T-TACT TA-AT TA-AT AAGTAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATA-T TATAT TATAT TA-TAT
* * * *
70453570 GT-TAT TACAT TATATT TTTAT AATAT TATAT AATAT TATAT TAT
1 -TATAT TATAT TATA-T TATAT TATAT TATAT TATAT TATAT TAT
70453614 TATATATATA
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
4 9 0.13
5 56 0.79
6 6 0.08
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:70454731 original size:22 final size:22
Alignment explanation
Indices: 70454703--70454812 Score: 89
Period size: 22 Copynumber: 4.9 Consensus size: 22
70454693 CGCTCTCTAA
*
70454703 TATTTAGCACGTTAGTGCTCTC
1 TATTTAGCACATTAGTGCTCTC
*
70454725 TATTTAGCACATCT-GTACTCTC
1 TATTTAGCACAT-TAGTGCTCTC
* *
70454747 TGATTATTAGCACGTCAGTGCTCTC
1 T-A-T-TTAGCACATTAGTGCTCTC
*
70454772 TGTTTAGCACATCTA-TGCTCTC
1 TATTTAGCACAT-TAGTGCTCTC
* * *
70454794 TGTATAGCACTTTAGTGCT
1 TATTTAGCACATTAGTGCT
70454813 TTCTGTTCAT
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
21 2 0.03
22 48 0.68
23 4 0.06
24 1 0.01
25 16 0.23
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (22 bp):
TATTTAGCACATTAGTGCTCTC
Found at i:70454757 original size:47 final size:45
Alignment explanation
Indices: 70454706--70454812 Score: 144
Period size: 47 Copynumber: 2.4 Consensus size: 45
70454696 TCTCTAATAT
*
70454706 TTAGCACGTTAGTGCTCTCTATTTAGCACATCTGTACTCTCTGATTA
1 TTAGCACGTTAGTGCTCTCTATTTAGCACATCTATACTCTCTG--TA
* * *
70454753 TTAGCACGTCAGTGCTCTCTGTTTAGCACATCTATGCTCTCTGTA
1 TTAGCACGTTAGTGCTCTCTATTTAGCACATCTATACTCTCTGTA
*
70454798 -TAGCACTTTAGTGCT
1 TTAGCACGTTAGTGCT
70454813 TTCTGTTCAT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
44 13 0.24
45 2 0.04
47 39 0.72
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (45 bp):
TTAGCACGTTAGTGCTCTCTATTTAGCACATCTATACTCTCTGTA
Found at i:70454758 original size:25 final size:22
Alignment explanation
Indices: 70454717--70454803 Score: 93
Period size: 22 Copynumber: 3.8 Consensus size: 22
70454707 TAGCACGTTA
*
70454717 GTGCTCTCTATTTAGCACATCT
1 GTGCTCTCTGTTTAGCACATCT
* * *
70454739 GTACTCTCTGATTATTAGCACGTCA
1 GTGCTCTCTG--T-TTAGCACATCT
70454764 GTGCTCTCTGTTTAGCACATCT
1 GTGCTCTCTGTTTAGCACATCT
* *
70454786 ATGCTCTCTGTATAGCAC
1 GTGCTCTCTGTTTAGCAC
70454804 TTTAGTGCTT
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
22 33 0.62
23 1 0.02
24 1 0.02
25 18 0.34
ACGTcount: A:0.20, C:0.26, G:0.16, T:0.38
Consensus pattern (22 bp):
GTGCTCTCTGTTTAGCACATCT
Found at i:70464446 original size:21 final size:19
Alignment explanation
Indices: 70464420--70464460 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
70464410 AATATGTTAA
*
70464420 ATGGGTCATGTTCGTAAGTAT
1 ATGGGTCAGGTT-GTAA-TAT
70464441 ATGGGTCAGGTTGTAATAT
1 ATGGGTCAGGTTGTAATAT
70464460 A
1 A
70464461 GTTACAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 4 0.21
21 11 0.58
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (19 bp):
ATGGGTCAGGTTGTAATAT
Found at i:70466260 original size:50 final size:50
Alignment explanation
Indices: 70466201--70466332 Score: 174
Period size: 50 Copynumber: 2.6 Consensus size: 50
70466191 TATTGAGGTT
* * *
70466201 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGTACTGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACTGAG
* *
70466251 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACTGAG
** * * *
70466301 ATGAGAACTCTCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGA
70466333 TATGACATTT
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACTGAG
Found at i:70469415 original size:20 final size:20
Alignment explanation
Indices: 70469392--70469438 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
70469382 TTAAATAATT
*
70469392 AATTTAAAT-ATTAAGGACTA
1 AATTGAAATAATTAA-GACTA
*
70469412 AATTGAAATAATTTAGACTA
1 AATTGAAATAATTAAGACTA
70469432 AATTGAA
1 AATTGAA
70469439 TAAACTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34
Consensus pattern (20 bp):
AATTGAAATAATTAAGACTA
Found at i:70470994 original size:41 final size:43
Alignment explanation
Indices: 70470944--70471025 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 43
70470934 TTTTTTCACC
* *
70470944 TTTAAATCTTCA-TT-TTTCTTCTTCTATTTTCTACTTTTCCT
1 TTTAAATCTTCATTTGTTTCTTCCTCTAGTTTCTACTTTTCCT
70470985 TTTAAATCTTCATTTTGTTTCTTCCTCTAGTTTCTACTTTT
1 TTTAAATCTTCA-TTTGTTTCTTCCTCTAGTTTCTACTTTT
70471026 TCTATAAGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 12 0.33
43 2 0.06
44 22 0.61
ACGTcount: A:0.15, C:0.21, G:0.02, T:0.62
Consensus pattern (43 bp):
TTTAAATCTTCATTTGTTTCTTCCTCTAGTTTCTACTTTTCCT
Found at i:70474870 original size:3 final size:3
Alignment explanation
Indices: 70474862--70474896 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
70474852 ATTAAACTAA
70474862 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
70474897 TAATAGACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:70487558 original size:21 final size:21
Alignment explanation
Indices: 70487532--70487580 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
70487522 GCAACTCAAT
70487532 TTTATTTATATTT-TATTTTA
1 TTTATTTATATTTATATTTTA
*
70487552 TTATATTTATATTTATATTTTC
1 TT-TATTTATATTTATATTTTA
70487574 TTTATTT
1 TTTATTT
70487581 TCTTGCATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 16 0.62
22 8 0.31
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTATTTATATTTATATTTTA
Found at i:70487561 original size:6 final size:6
Alignment explanation
Indices: 70487530--70487571 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
70487520 AGGCAACTCA
70487530 ATTT-T ATTTAT ATTT-T ATTT-T A-TTAT ATTTAT ATTTAT ATTT
1 ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTTAT ATTT
70487572 TCTTTATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
4 2 0.06
5 13 0.38
6 19 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
ATTTAT
Found at i:70491946 original size:341 final size:332
Alignment explanation
Indices: 70491325--70491985 Score: 887
Period size: 341 Copynumber: 2.0 Consensus size: 332
70491315 GTTGATCCAA
* *
70491325 GACTTAGCTAGTTTGAATGGCTCAAAGCTAATGTTGACTCAAAGGTTTGGTTCTAAAAAGTTCAA
1 GACTTAGCTAGTTTGAATGGCTCAAAGCTAATGTTGACTCAAAGGTTTGATTCCAAAAAGTTCAA
** * * * **
70491390 ATTCCTTAGAAATACGTGTACTGTTTCTTTCTCAAAGAAAATTTTGGCTCGTATGGAACTCATTG
66 ATAACTTAGAAATACGTGAACTGTTACTTTCTCAAAGAAAATTTTGGCTCGTATAGAACTCATCA
* * *
70491455 GTCTTCACAAGTAAACCATTCCATGTGATAATATCTCAAGAGCTTTAGGAAAAGTAAATGAATTC
131 GTCTTCACAAGTAAACCATTCCATGAGATAATATCTCAAGAGCTTTAGGAAAAGCAAACGAATTC
* * * *
70491520 TTTGGCCTTGCTACCGTGATTAAAAATAAAATCCCTTTACCCACAATTGTAGGAGTAACATGGAG
196 TTTGGCCTTGCTACCGTGAGTAAAAAGAAAATCCATTTAACCACAATTGTAGGAGTAACATGGAG
* * * * *
70491585 GGCACCACAAGCACAATGGCATTAACTTAGTACAAATGACTCCATCATGGGGAATTTGGAAATAG
261 GCCACCACAAGAAAAATGGCATAAACTCA--ACAAATGACTCCAT--T-GGGAATTTGGAAATAG
70491650 TGTTAGATACAG
321 TGTTAGATACAG
*
70491662 GACTTAGCTAGTTTGAATGGCTCAAAGCTAATGTTGACTCAAATGTTTGATTCCAAAAAGTTCAA
1 GACTTAGCTAGTTTGAATGGCTCAAAGCTAATGTTGACTCAAAGGTTTGATTCCAAAAAGTTCAA
* * *
70491727 ATAACTTAGAATTACGTGAACTGCTTCACTATT-TGAGAAGAAAATTTTGGCTGGTATAGAACTC
66 ATAACTTAGAAATACGTGAACTG-TT-ACT-TTCTCA-AAGAAAATTTTGGCTCGTATAGAACTC
* * *
70491791 ATCAGTCTTCACAGGTAAACCCATTCCATGAGATATTATCTCAAGAGCTTT-GGCAAAAGCAAGC
127 ATCAGTCTTCACAAGTAAA-CCATTCCATGAGATAATATCTCAAGAGCTTTAGG-AAAAGCAAAC
* * *
70491855 GAATTCTTTGGCTTTGCTACCGTG-GTAGAAAAGAAGATCCATTTAACCACATTTGTAGGAGTAA
190 GAATTCTTTGGCCTTGCTACCGTGAGTA-AAAAGAAAATCCATTTAACCACAATTGTAGGAGTAA
* * *
70491919 CATGGAGGCCATCACAAGAAAAATGGCATAAACTCAACAGATGACTCCATTGGGAATTTGGGAAT
254 CATGGAGGCCACCACAAGAAAAATGGCATAAACTCAACAAATGACTCCATTGGGAATTTGGAAAT
70491984 AG
319 AG
70491986 AGTGTTGAAT
Statistics
Matches: 283, Mismatches: 34, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
336 15 0.05
337 82 0.29
338 2 0.01
339 17 0.06
340 47 0.17
341 120 0.42
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (332 bp):
GACTTAGCTAGTTTGAATGGCTCAAAGCTAATGTTGACTCAAAGGTTTGATTCCAAAAAGTTCAA
ATAACTTAGAAATACGTGAACTGTTACTTTCTCAAAGAAAATTTTGGCTCGTATAGAACTCATCA
GTCTTCACAAGTAAACCATTCCATGAGATAATATCTCAAGAGCTTTAGGAAAAGCAAACGAATTC
TTTGGCCTTGCTACCGTGAGTAAAAAGAAAATCCATTTAACCACAATTGTAGGAGTAACATGGAG
GCCACCACAAGAAAAATGGCATAAACTCAACAAATGACTCCATTGGGAATTTGGAAATAGTGTTA
GATACAG
Found at i:70498149 original size:14 final size:15
Alignment explanation
Indices: 70498124--70498174 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
70498114 TATTTCTTAA
70498124 TTTTT-TTATATTTTC
1 TTTTTCTTATA-TTTC
* *
70498139 TTTTTCTTATTCTTTT
1 TTTTTCTTA-TATTTC
70498155 TTTTTCTT-TATTTC
1 TTTTTCTTATATTTC
70498169 TTTTTC
1 TTTTTC
70498175 ATTCTCTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 10 0.33
15 5 0.17
16 14 0.47
17 1 0.03
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTCTTATATTTC
Found at i:70498186 original size:41 final size:43
Alignment explanation
Indices: 70498104--70498184 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 43
70498094 TTTAATTTAA
*
70498104 ATTCATTTTTTATTTCTTAATTTTTTTATATTTTCTTTTTCTT
1 ATTCATTTTTTATTTCTTAATTTTTTTATATTCTCTTTTTCTT
*
70498147 ATTC-TTTTTT-TTTCTTTATTTCTTTT-TCATTCTCTTTT
1 ATTCATTTTTTATTTCTTAATTT-TTTTAT-ATTCTCTTTT
70498185 CTCTCCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
41 11 0.32
42 19 0.56
43 4 0.12
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (43 bp):
ATTCATTTTTTATTTCTTAATTTTTTTATATTCTCTTTTTCTT
Found at i:70500440 original size:14 final size:14
Alignment explanation
Indices: 70500423--70500466 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 14
70500413 TAACATAGTG
70500423 TAATCTTAATTAAT
1 TAATCTTAATTAAT
70500437 TAATCTTAATCATAATT
1 TAATCTTAAT--TAA-T
70500454 TAA-CTTAATTAAT
1 TAATCTTAATTAAT
70500467 CTATGTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 1 0.04
14 13 0.48
16 9 0.33
17 4 0.15
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATCTTAATTAAT
Found at i:70510717 original size:12 final size:12
Alignment explanation
Indices: 70510692--70510725 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
70510682 GGATTGCAAG
70510692 TTTCCATTTTCA
1 TTTCCATTTTCA
* *
70510704 TTTTCATTTCCA
1 TTTCCATTTTCA
70510716 TTTCCATTTT
1 TTTCCATTTT
70510726 TGGAAACCTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCCATTTTCA
Found at i:70513392 original size:33 final size:32
Alignment explanation
Indices: 70513320--70513395 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 32
70513310 ATGTTTGAAT
* * *
70513320 GTAAGACCATAGCTGGGCTATGACATTTTAAT
1 GTAAGACCATAACTGGGCTATGACATTTAAAC
* * *
70513352 GAAAAGACCATAACTGGGTTATGGCATCTTAAAC
1 G-TAAGACCATAACTGGGCTATGACAT-TTAAAC
70513386 GTAAGACCAT
1 GTAAGACCAT
70513396 GGTTGGACCA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
32 1 0.03
33 29 0.83
34 5 0.14
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (32 bp):
GTAAGACCATAACTGGGCTATGACATTTAAAC
Found at i:70513502 original size:105 final size:101
Alignment explanation
Indices: 70513287--70513483 Score: 252
Period size: 105 Copynumber: 1.9 Consensus size: 101
70513277 ATTGACGGAC
* * **
70513287 AAGACCATGGTTGGACCATGGAAATGTTTGAATGTAAGACCATAGCTGGGCTATGACATTTTAAT
1 AAGACCATGGTTGGACCATGGAAATGTATGAATGTAAGACCATAGCTAGGCTATGACATCCTAAT
70513352 GAAAAGACCATAACTGGGTTATGGCATCTTAAACGT
66 GAAAAGACCATAACTGGGTTATGGCATCTTAAACGT
* **
70513388 AAGACCATGGTTGGACCATGGTAGAAAGTGTAT-ACGTGTAAGACCATAGCTAGGCTATGGTATC
1 AAGACCATGGTTGGACCAT-G--GAAA-TGTATGA-ATGTAAGACCATAGCTAGGCTATGACATC
* * *
70513452 CTGATGATAAGGCCATAACTGGGTTATGGCAT
61 CTAATGAAAAGACCATAACTGGGTTATGGCAT
70513484 TATGAGTGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
101 19 0.23
102 1 0.01
104 5 0.06
105 56 0.69
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (101 bp):
AAGACCATGGTTGGACCATGGAAATGTATGAATGTAAGACCATAGCTAGGCTATGACATCCTAAT
GAAAAGACCATAACTGGGTTATGGCATCTTAAACGT
Found at i:70513512 original size:105 final size:105
Alignment explanation
Indices: 70513319--70513513 Score: 250
Period size: 105 Copynumber: 1.9 Consensus size: 105
70513309 AATGTTTGAA
* **
70513319 TGTAAGACCATAGCTGGGCTATGACATTTTAATGAAAAGACCATAACTGGGTTATGGCATCTTAA
1 TGTAAGACCATAGCTAGGCTATGACATCCTAATGAAAAGACCATAACTGGGTTATGGCATCTTAA
*
70513384 ACGTAAGACCATGGTTGGACCATGGTAGAAAGTGTATACG
66 ACGTAAGACCATGGTAGGACCATGGTAGAAAGTGTATACG
** * * * *
70513424 TGTAAGACCATAGCTAGGCTATGGTATCCTGATGATAAGGCCATAACTGGGTTATGGCAT-TATG
1 TGTAAGACCATAGCTAGGCTATGACATCCTAATGAAAAGACCATAACTGGGTTATGGCATCT-TA
**
70513488 AGTGTAAGACCATGGCTAGG-CCATGG
65 AACGTAAGACCATGG-TAGGACCATGG
70513514 CAATTGTGTA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
104 1 0.01
105 72 0.95
106 3 0.04
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (105 bp):
TGTAAGACCATAGCTAGGCTATGACATCCTAATGAAAAGACCATAACTGGGTTATGGCATCTTAA
ACGTAAGACCATGGTAGGACCATGGTAGAAAGTGTATACG
Found at i:70514059 original size:20 final size:20
Alignment explanation
Indices: 70514036--70514078 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
70514026 ACATGAGATG
70514036 AGTGAAATAGGACATTTTTA
1 AGTGAAATAGGACATTTTTA
70514056 AGTGAAATAGGACATTTTTA
1 AGTGAAATAGGACATTTTTA
70514076 AGT
1 AGT
70514079 TAGGAACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.35
Consensus pattern (20 bp):
AGTGAAATAGGACATTTTTA
Found at i:70515073 original size:50 final size:50
Alignment explanation
Indices: 70514962--70515196 Score: 272
Period size: 50 Copynumber: 4.6 Consensus size: 50
70514952 ATTTGGGTAA
* * * *
70514962 AGAGATCCAATGTAAGACCATGTCTGGGTCATGGCCTTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC--GAG---ATG
* *
70515018 AGAGGTCCCATGTAAGACCATGTCTGGGAAATGGCGTTGTCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
70515068 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
70515118 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCATCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
70515168 AGAACTCCCATGTAAGACCATATCTGGGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGA
70515197 TATGACATTA
Statistics
Matches: 158, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
50 117 0.74
53 3 0.02
55 2 0.01
56 36 0.23
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:70529645 original size:31 final size:30
Alignment explanation
Indices: 70529607--70529665 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
70529597 CACCCTTAAA
* *
70529607 ATATTTACACTATTGGTCCTTCAAATTTTTC
1 ATATTTACACT-TTAGTCCCTCAAATTTTTC
*
70529638 ATATTTACACTTTAGTCCCTCAAGTTTT
1 ATATTTACACTTTAGTCCCTCAAATTTT
70529666 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.25, C:0.20, G:0.07, T:0.47
Consensus pattern (30 bp):
ATATTTACACTTTAGTCCCTCAAATTTTTC
Found at i:70529675 original size:30 final size:31
Alignment explanation
Indices: 70529607--70529675 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
70529597 CACCCTTAAA
* * *
70529607 ATATTTACACTATTGGTCCTTCAAATTTTTC
1 ATATTTACACTATTAGTCCCTCAAAGTTTTC
*
70529638 ATATTTACACT-TTAGTCCCTC-AAGTTTTG
1 ATATTTACACTATTAGTCCCTCAAAGTTTTC
70529667 AGTATTTAC
1 A-TATTTAC
70529676 TATTGGGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 7 0.21
30 15 0.45
31 11 0.33
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAGTCCCTCAAAGTTTTC
Found at i:70545645 original size:44 final size:44
Alignment explanation
Indices: 70545596--70545684 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
70545586 ATAGGTGAAG
70545596 TATGTACCGAGTTAATCTTTGATTATAATGTGATGATAATTACA
1 TATGTACCGAGTTAATCTTTGATTATAATGTGATGATAATTACA
*
70545640 TATGTACCGAGTTAATCTTTGATTGTAATGTGATGATAATTACA
1 TATGTACCGAGTTAATCTTTGATTATAATGTGATGATAATTACA
70545684 T
1 T
70545685 GGTTACTAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.42
Consensus pattern (44 bp):
TATGTACCGAGTTAATCTTTGATTATAATGTGATGATAATTACA
Found at i:70563530 original size:44 final size:44
Alignment explanation
Indices: 70563465--70563744 Score: 176
Period size: 44 Copynumber: 6.4 Consensus size: 44
70563455 CGGATTTTAC
* ** *
70563465 CTCCTTGAGATTACAACGGAGCAGATTGAAGCCAGTAATCCTAT
1 CTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTAATCTTAT
* * * *** *
70563509 TTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG-GATCTTAT
1 CTCCCTGAGATTACAGTGGAGCAGATT-GAAGCCAGTAATCTTAT
* * * * * * * * *
70563553 CTCTCTAAAATTACAGTAGAGTAGATCGCA-TCAG--GTCTTAT
1 CTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTAATCTTAT
** * * *
70563594 CTCCCTGAGATTACAGTGGAATAGACTGAAG-AATTTCAAATCTTAT
1 CTCCCTGAGATTACAGTGGAGCAGATTGAAGCCA-GT--AATCTTAT
* * *
70563640 CTCCCTGA-AGTTACAGTGGAGCAAATTGAAGCCAGAAATCGTAT
1 CTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCCAGTAATCTTAT
* *
70563684 CTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTAT
1 CTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTAATCTTAT
* * *
70563728 TTCCCTAATATTACAGT
1 CTCCCTGAGATTACAGT
70563745 AAAGGATCTT
Statistics
Matches: 175, Mismatches: 51, Indels: 20
0.71 0.21 0.08
Matches are distributed among these distances:
41 29 0.17
42 2 0.01
43 1 0.01
44 105 0.60
45 6 0.03
46 31 0.18
47 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
CTCCCTGAGATTACAGTGGAGCAGATTGAAGCCAGTAATCTTAT
Done.