Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 23 of 313
Found at i:7852008 original size:46 final size:45
Alignment explanation
Indices: 7851864--7852031 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 45
7851854 TTTGTGTGCT
7851864 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCAC-TTGATGAGAGCC
* * *
7851910 AGTGTATGACCATGTCTGGGACATGGCATCGACA-TTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCACTT--GATGAGAGCC
* *
7851958 AGTGTAAGATATGTCTGGGACGTGCATCGGCCACTTGATGCA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACTTGATG-AGAGCC
* *
7852004 AGTGTAAGGCATGTCTAGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
7852032 TACTTCATGA
Statistics
Matches: 102, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
45 2 0.02
46 44 0.43
47 33 0.32
48 23 0.23
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACTTGATGAGAGCC
Found at i:7856652 original size:93 final size:93
Alignment explanation
Indices: 7856545--7856715 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
7856535 GCCCCTAAGT
* *
7856545 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7856610 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
7856638 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7856703 CGAGTTCGGATGC
66 CGAGTTCGGATGC
7856716 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:7856712 original size:46 final size:46
Alignment explanation
Indices: 7856540--7856712 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
7856530 AACCCGCCCC
* * *
7856540 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
7856586 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
7856634 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
7856679 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
7856713 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:7857169 original size:30 final size:30
Alignment explanation
Indices: 7857135--7857194 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
7857125 ATTTAATACG
7857135 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
7857165 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
7857195 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:7859774 original size:46 final size:46
Alignment explanation
Indices: 7859626--7859891 Score: 198
Period size: 47 Copynumber: 5.7 Consensus size: 46
7859616 TGGGTAAGGT
* * ** *
7859626 GCCGATGCCACGTCCTAGACATGGTCTTACACTGGCTTAGATCACAA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTTCATCTCAAG
* * * * * **
7859673 GTCAATGCCATGTCTCAGACATGGTCTTACACTGACTATCATCTTGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTTCATC-TCAAG
* * * *
7859721 GCTGATGCATGTCCTAGACATGTCTTACATTGGCTTAT-GTCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-TCATCTCAAG
* *
7859767 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATCTCAAG
* * * **
7859813 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTTCAT-CTCAAG
* *
7859861 GCCGATGCATGTCCCGGACATCTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
7859892 AGCCAACGAT
Statistics
Matches: 173, Mismatches: 39, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
45 3 0.02
46 67 0.39
47 74 0.43
48 28 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTTCATCTCAAG
Found at i:7866118 original size:21 final size:22
Alignment explanation
Indices: 7866092--7866143 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
7866082 TTTCTTCTAA
7866092 TTTCTTTT-T-CTTGCTCTTCTT
1 TTTCTTTTCTACTTGCTCTT-TT
*
7866113 TTTCTTTTCTCACTTGTTCTTTT
1 TTTCTTTTCT-ACTTGCTCTTTT
7866136 TTTCTTTT
1 TTTCTTTT
7866144 GGTATTTTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 8 0.30
22 1 0.04
23 10 0.37
24 8 0.30
ACGTcount: A:0.02, C:0.21, G:0.04, T:0.73
Consensus pattern (22 bp):
TTTCTTTTCTACTTGCTCTTTT
Found at i:7866200 original size:18 final size:19
Alignment explanation
Indices: 7866155--7866201 Score: 71
Period size: 17 Copynumber: 2.5 Consensus size: 19
7866145 GTATTTTGCA
7866155 TTCTTTTTCTCATTTTTCTT
1 TTCTTTTT-TCATTTTTCTT
7866175 TTC-TTTTTCA-TTTTCTT
1 TTCTTTTTTCATTTTTCTT
7866192 TTCTTTTTTC
1 TTCTTTTTTC
7866202 TCTTGAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 10 0.38
18 9 0.35
19 4 0.15
20 3 0.12
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (19 bp):
TTCTTTTTTCATTTTTCTT
Found at i:7870249 original size:27 final size:27
Alignment explanation
Indices: 7870219--7870278 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 27
7870209 TTCTTTTTTA
7870219 TTTTTTATAAATTTCGTATTTCTCTTCT
1 TTTTTTATAAATTTCGTATTTCT-TTCT
*
7870247 TTTTTTTTAAATTTCGTATTTCTTT-T
1 TTTTTTATAAATTTCGTATTTCTTTCT
7870273 TTTTTT
1 TTTTTT
7870279 GAATACTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 7 0.23
27 2 0.06
28 22 0.71
ACGTcount: A:0.15, C:0.10, G:0.03, T:0.72
Consensus pattern (27 bp):
TTTTTTATAAATTTCGTATTTCTTTCT
Found at i:7872284 original size:50 final size:51
Alignment explanation
Indices: 7872226--7872335 Score: 159
Period size: 50 Copynumber: 2.2 Consensus size: 51
7872216 TTAATAAAGT
** *
7872226 CATGCATTATGTAACTTTCATGTAAGTTAAGTTTGCATCA-TAAATTATGG
1 CATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCATCATTAAATTAAGG
* * *
7872276 CATGCATTATGTAACTCCCATGTTAGTTAAGTTTTCATCATTAAATTAAGT
1 CATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCATCATTAAATTAAGG
7872327 CATGCATTA
1 CATGCATTA
7872336 AGTGACTCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 36 0.68
51 17 0.32
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (51 bp):
CATGCATTATGTAACTCCCATGTAAGTTAAGTTTGCATCATTAAATTAAGG
Found at i:7883738 original size:16 final size:16
Alignment explanation
Indices: 7883717--7883748 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7883707 AATTTTTGGG
7883717 GCAAAAATATAATTTT
1 GCAAAAATATAATTTT
*
7883733 GCAAAAATATGATTTT
1 GCAAAAATATAATTTT
7883749 TGGATCACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (16 bp):
GCAAAAATATAATTTT
Found at i:7896470 original size:25 final size:25
Alignment explanation
Indices: 7896419--7896470 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
7896409 TAACAGAAAG
*
7896419 TAGTTGAAGTCTGTTAGCAGTTGAT
1 TAGTTGAAGTCTGTTAGCAGTTCAT
7896444 TAGTTGAAGTCTGTTAGCTAG-TCAT
1 TAGTTGAAGTCTGTTAGC-AGTTCAT
7896469 TA
1 TA
7896471 CTTTCTACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (25 bp):
TAGTTGAAGTCTGTTAGCAGTTCAT
Found at i:7900005 original size:19 final size:19
Alignment explanation
Indices: 7899960--7899999 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
7899950 TAATCACTGG
7899960 GACAGATTCTCAGGCTATA
1 GACAGATTCTCAGGCTATA
7899979 GACAGATTCTCAGGCTATA
1 GACAGATTCTCAGGCTATA
7899998 GA
1 GA
7900000 TCGATTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (19 bp):
GACAGATTCTCAGGCTATA
Found at i:7901005 original size:25 final size:25
Alignment explanation
Indices: 7900954--7901005 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
7900944 TAACAGAAAG
* *
7900954 TAGTTGAAGTCTGTTAGTAGTTGAT
1 TAGTTAAAGTCTGTTAGTAGTTCAT
7900979 TAGTTAAAGTCTGTTAGCTAG-TCAT
1 TAGTTAAAGTCTGTTAG-TAGTTCAT
7901004 TA
1 TA
7901006 CTTTCTACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (25 bp):
TAGTTAAAGTCTGTTAGTAGTTCAT
Found at i:7901709 original size:49 final size:49
Alignment explanation
Indices: 7901653--7901757 Score: 122
Period size: 49 Copynumber: 2.1 Consensus size: 49
7901643 GTATCAGTAG
* * *
7901653 GCTACTACGTGTATCAGA-GGTTAGGTCACGTGTGTAGTACTAAGTACAA
1 GCTACTACATGTACCAGATGGTT-GGTCACATGTGTAGTACTAAGTACAA
* * * * *
7901702 GCTACTACATGTACCCGATTGTTGGTCATATGTGTAGTACTAAGTGCAG
1 GCTACTACATGTACCAGATGGTTGGTCACATGTGTAGTACTAAGTACAA
7901751 GCTACTA
1 GCTACTA
7901758 TGCGTACCAG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
49 44 0.94
50 3 0.06
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (49 bp):
GCTACTACATGTACCAGATGGTTGGTCACATGTGTAGTACTAAGTACAA
Found at i:7916060 original size:16 final size:16
Alignment explanation
Indices: 7916039--7916071 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7916029 CTTTTTAAGG
*
7916039 TAACTTTATTTGTATC
1 TAACTTTATTCGTATC
7916055 TAACTTTATTCGTATC
1 TAACTTTATTCGTATC
7916071 T
1 T
7916072 TTCATTTTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.55
Consensus pattern (16 bp):
TAACTTTATTCGTATC
Found at i:7918932 original size:49 final size:49
Alignment explanation
Indices: 7918870--7918994 Score: 137
Period size: 49 Copynumber: 2.6 Consensus size: 49
7918860 AAGTCGGTGC
*
7918870 CATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GCTGATGA
1 CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGCTGATGA
* * * * *
7918919 CGTGTCCCAGACAGGTCCTACACT-AGCTCTCATCTATCGGTGTTGATGC
1 CATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGGTGCTGATGA
* * *
7918968 CATGTCCCAAATAGGTCTTACATTGAC
1 CATGTCCCAGACAGGTCTTACACTGAC
7918995 ACACAACAAG
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
48 2 0.03
49 59 0.95
50 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
CATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCTGATGA
Found at i:7923195 original size:3 final size:3
Alignment explanation
Indices: 7923189--7923232 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7923179 TAGTTGCAGA
7923189 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7923233 AAAAGATGGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7924329 original size:18 final size:20
Alignment explanation
Indices: 7924292--7924328 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7924282 TATGTATAAA
7924292 CATTATAAAAATATAAAAAT
1 CATTATAAAAATATAAAAAT
7924312 CATTATAAAAATA-AAAA
1 CATTATAAAAATATAAAA
7924329 TATAGAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (20 bp):
CATTATAAAAATATAAAAAT
Found at i:7924347 original size:24 final size:25
Alignment explanation
Indices: 7924296--7924360 Score: 80
Period size: 24 Copynumber: 2.6 Consensus size: 25
7924286 TATAAACATT
7924296 ATAAAAATATAAAAATCATTATAAAA
1 ATAAAAATATAAAAATCA-TATAAAA
*
7924322 ATAAAAATATAGAAAA-C-TATAGAA
1 ATAAAAATATA-AAAATCATATAAAA
7924346 ATAAAAATCATAAAA
1 ATAAAAAT-ATAAAA
7924361 GAATTATAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
24 17 0.47
25 3 0.08
26 12 0.33
27 4 0.11
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (25 bp):
ATAAAAATATAAAAATCATATAAAA
Found at i:7924379 original size:20 final size:18
Alignment explanation
Indices: 7924356--7924429 Score: 71
Period size: 20 Copynumber: 3.9 Consensus size: 18
7924346 ATAAAAATCA
7924356 TAAAAGAATTATAAAAGTTG
1 TAAAA-AATTATAAAA-TTG
*
7924376 TAAAAAATTTATAAAAAATCG
1 TAAAAAA-TTAT--AAAATTG
7924397 T-AAAAA-TATAAAATTG
1 TAAAAAATTATAAAATTG
*
7924413 TAAAAAAATATAAAATT
1 TAAAAAATTATAAAATT
7924430 TTATAAAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
16 7 0.15
17 5 0.11
18 12 0.26
19 2 0.04
20 14 0.30
21 3 0.06
22 4 0.09
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (18 bp):
TAAAAAATTATAAAATTG
Found at i:7924415 original size:16 final size:17
Alignment explanation
Indices: 7924365--7924443 Score: 61
Period size: 18 Copynumber: 4.3 Consensus size: 17
7924355 ATAAAAGAAT
7924365 TATAAAAGTTGTAAAAAA
1 TATAAAA-TTGTAAAAAA
*
7924383 TTTATAAAAAATCGT-AAAAA
1 --TAT--AAAATTGTAAAAAA
7924403 TATAAAATTGTAAAAAAA
1 TATAAAATTGT-AAAAAA
*
7924421 TATAAAATTTTATAAAAA
1 TATAAAATTGTA-AAAAA
*
7924439 AATAA
1 TATAA
7924444 TATCTAGGAC
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
16 7 0.14
17 1 0.02
18 27 0.54
20 8 0.16
21 3 0.06
22 4 0.08
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.30
Consensus pattern (17 bp):
TATAAAATTGTAAAAAA
Found at i:7924419 original size:18 final size:19
Alignment explanation
Indices: 7924398--7924443 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
7924388 AAAAAATCGT
7924398 AAAAATATAAAATTGTA-A
1 AAAAATATAAAATTGTATA
*
7924416 AAAAATATAAAATTTTATA
1 AAAAATATAAAATTGTATA
7924435 AAAAA-ATAA
1 AAAAATATAA
7924444 TATCTAGGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAAATATAAAATTGTATA
Found at i:7925262 original size:10 final size:10
Alignment explanation
Indices: 7925247--7925292 Score: 51
Period size: 9 Copynumber: 4.6 Consensus size: 10
7925237 ATTTTTTAAA
7925247 ATTAAAAATT
1 ATTAAAAATT
7925257 ATT-AAAATT
1 ATTAAAAATT
*
7925266 A-TAAAAAAT
1 ATTAAAAATT
7925275 ATTAAAAAATT
1 ATT-AAAAATT
7925286 AATTAAA
1 -ATTAAA
7925293 TGTTAACATG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
8 1 0.03
9 13 0.43
10 4 0.13
11 9 0.30
12 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
ATTAAAAATT
Found at i:7925386 original size:16 final size:16
Alignment explanation
Indices: 7925365--7925408 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7925355 GGTAATTTGA
*
7925365 TAAAAAAATAAAAGTT
1 TAAAAAAATAAAAGAT
7925381 TAAAAATAA-AAAAGAT
1 TAAAAA-AATAAAAGAT
*
7925397 GAAAAAAATAAA
1 TAAAAAAATAAA
7925409 TGAAGGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 2 0.08
16 20 0.83
17 2 0.08
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (16 bp):
TAAAAAAATAAAAGAT
Found at i:7925665 original size:67 final size:67
Alignment explanation
Indices: 7925557--7925692 Score: 236
Period size: 67 Copynumber: 2.0 Consensus size: 67
7925547 AACCTTGACC
*
7925557 TTGTTGCTTTTATAATTCTTTAACAACACTTTTTTTTAGATGTGAAAAATATATAGATAAGTTAA
1 TTGTTGCTTTTATAATTCTTTAACAACACTTTCTTTTAGATGTGAAAAATATATAGATAAGTTAA
7925622 AT
66 AT
* * *
7925624 TTGTTGTTTTTATAATTCTTTAACAACACTTTCTTTTAGATGTGAAAAATATATAGTTATGTTAA
1 TTGTTGCTTTTATAATTCTTTAACAACACTTTCTTTTAGATGTGAAAAATATATAGATAAGTTAA
7925689 AT
66 AT
7925691 TT
1 TT
7925693 TTAATAGTTA
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (67 bp):
TTGTTGCTTTTATAATTCTTTAACAACACTTTCTTTTAGATGTGAAAAATATATAGATAAGTTAA
AT
Found at i:7932231 original size:28 final size:28
Alignment explanation
Indices: 7932175--7932236 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
7932165 AACAAAGATA
*
7932175 AAGTCCACCAGGATAGTAAACATGAGGT
1 AAGTCCACCAGGATAGTAAACACGAGGT
* * *
7932203 ACGTCCACTAGGATAGTAAACACGGGGT
1 AAGTCCACCAGGATAGTAAACACGAGGT
7932231 AAGTCC
1 AAGTCC
7932237 GATGGGACGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (28 bp):
AAGTCCACCAGGATAGTAAACACGAGGT
Found at i:7935482 original size:38 final size:38
Alignment explanation
Indices: 7935431--7935506 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
7935421 CAAGTAGGGA
7935431 ATAAATTTATATTTAATCATTTTATATTCGTTATCCTC
1 ATAAATTTATATTTAATCATTTTATATTCGTTATCCTC
* **
7935469 ATAAATTTATATTTAGTCATTTTATATTTTTTATCCTC
1 ATAAATTTATATTTAATCATTTTATATTCGTTATCCTC
7935507 GCATGATAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.12, G:0.03, T:0.55
Consensus pattern (38 bp):
ATAAATTTATATTTAATCATTTTATATTCGTTATCCTC
Found at i:7937760 original size:57 final size:57
Alignment explanation
Indices: 7937672--7937786 Score: 203
Period size: 57 Copynumber: 2.0 Consensus size: 57
7937662 AAAGACTTAG
* *
7937672 TTTATTTTTTTCAATGGCATGTATAGTATTTTTTAGTATTTTGTTATATGTGTCATT
1 TTTATTTTGTTCAATGGCATGTATAGTATTTTTTAATATTTTGTTATATGTGTCATT
*
7937729 TTTATTTTGTTCAATGGCATGTGTAGTATTTTTTAATATTTTGTTATATGTGTCATT
1 TTTATTTTGTTCAATGGCATGTATAGTATTTTTTAATATTTTGTTATATGTGTCATT
7937786 T
1 T
7937787 GATTTTCCAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.21, C:0.05, G:0.15, T:0.59
Consensus pattern (57 bp):
TTTATTTTGTTCAATGGCATGTATAGTATTTTTTAATATTTTGTTATATGTGTCATT
Found at i:7940881 original size:32 final size:32
Alignment explanation
Indices: 7940831--7940908 Score: 120
Period size: 32 Copynumber: 2.4 Consensus size: 32
7940821 TGTCCCAAGC
* *
7940831 CACATGGGCATGTGTGACCACACGGTTCAACA
1 CACATGGGCGTGTGTGACCACACGGTTAAACA
*
7940863 CACACGGGCGTGTGTGACCACACGGTTAAACA
1 CACATGGGCGTGTGTGACCACACGGTTAAACA
*
7940895 CACATGGGTGTGTG
1 CACATGGGCGTGTG
7940909 ACTCTCCAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (32 bp):
CACATGGGCGTGTGTGACCACACGGTTAAACA
Found at i:7941681 original size:93 final size:93
Alignment explanation
Indices: 7941518--7941703 Score: 354
Period size: 93 Copynumber: 2.0 Consensus size: 93
7941508 ATCAGTCTAA
*
7941518 ATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTAAGGGATTGGGTGAGAGACTGAGAGTTGGC
1 ATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTAAGGGATTGGGTGAGAGACTGAGAGTTGGA
7941583 CGAATTTAGGGAATTGAAGAGGGAAAAT
66 CGAATTTAGGGAATTGAAGAGGGAAAAT
7941611 ATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTAAGGGATTGGGTGAGAGACTGAGAGTTGGA
1 ATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTAAGGGATTGGGTGAGAGACTGAGAGTTGGA
*
7941676 TGAATTTAGGGAATTGAAGAGGGAAAAT
66 CGAATTTAGGGAATTGAAGAGGGAAAAT
7941704 TCGACAGAGG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.35, C:0.03, G:0.38, T:0.24
Consensus pattern (93 bp):
ATGCTTGAATTAAGGAGTGATAAGGGGAGAGATTTAAGGGATTGGGTGAGAGACTGAGAGTTGGA
CGAATTTAGGGAATTGAAGAGGGAAAAT
Found at i:7954467 original size:42 final size:42
Alignment explanation
Indices: 7954413--7954613 Score: 163
Period size: 42 Copynumber: 4.7 Consensus size: 42
7954403 TGCCAAAATG
* * *
7954413 TCCCAGACATGGTCTTACATGGGATCTCACATCGATGCCATT
1 TCCCAGATATGGTCTTACATGAGATCTCACATCGATGCCATA
* * * * * *
7954455 TCCCAAATATGGTCTTATACGAAATCTCACTTCGATGCCATC
1 TCCCAGATATGGTCTTACATGAGATCTCACATCGATGCCATA
* * * * *
7954497 TCCCAGACATGGTCTTACA--CGATCTCATATCAACGCCATA
1 TCCCAGATATGGTCTTACATGAGATCTCACATCGATGCCATA
* * *
7954537 TGCCAGATATGGTCTTACATGATATCACATACCGATGCTGATGCCATA
1 TCCCAGATATGGTCTTACATGAGATCTC--A-C-AT-C-GATGCCATA
* *
7954585 TCCCAGATATGGTCTTATACGAGATCTCA
1 TCCCAGATATGGTCTTACATGAGATCTCA
7954614 TTGATCCAAA
Statistics
Matches: 120, Mismatches: 31, Indels: 12
0.74 0.19 0.07
Matches are distributed among these distances:
40 31 0.26
42 54 0.45
44 1 0.01
46 3 0.03
47 1 0.01
48 30 0.25
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (42 bp):
TCCCAGATATGGTCTTACATGAGATCTCACATCGATGCCATA
Found at i:7954573 original size:82 final size:83
Alignment explanation
Indices: 7954413--7954574 Score: 184
Period size: 82 Copynumber: 2.0 Consensus size: 83
7954403 TGCCAAAATG
* * * * *
7954413 TCCCAGACATGGTCTTACATGGGATCTCACATCGATGCCATTTCCCAAATATGGTCTTATACGAA
1 TCCCAGACATGGTCTTACA-GCGATCTCACATCAACGCCATATCCCAAATATGGTCTTACACGAA
* *
7954478 ATCTCACTTCGATGCCATC
65 ATCACACTCCGATGCCATC
* * * * *
7954497 TCCCAGACATGGTCTTACA-CGATCTCATATCAACGCCATATGCCAGATATGGTCTTACATGATA
1 TCCCAGACATGGTCTTACAGCGATCTCACATCAACGCCATATCCCAAATATGGTCTTACACGAAA
7954561 TCACA-TACCGATGC
66 TCACACT-CCGATGC
7954575 TGATGCCATA
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
81 1 0.02
82 45 0.69
84 19 0.29
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (83 bp):
TCCCAGACATGGTCTTACAGCGATCTCACATCAACGCCATATCCCAAATATGGTCTTACACGAAA
TCACACTCCGATGCCATC
Found at i:7955210 original size:41 final size:41
Alignment explanation
Indices: 7955153--7955236 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
7955143 TTTCTTAAAA
7955153 ATCACTTAGAAAAAGATGTTCATCTAACACCAAACTTCCAT
1 ATCACTTAGAAAAAGATGTTCATCTAACACCAAACTTCCAT
*
7955194 ATCACTTAGAAGAAGATGTTCATCTAACACCAAACTTCCAT
1 ATCACTTAGAAAAAGATGTTCATCTAACACCAAACTTCCAT
7955235 AT
1 AT
7955237 TCCTCCATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.27
Consensus pattern (41 bp):
ATCACTTAGAAAAAGATGTTCATCTAACACCAAACTTCCAT
Found at i:7957199 original size:25 final size:25
Alignment explanation
Indices: 7957171--7957220 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7957161 TCATATTACG
7957171 GGACTCAATAATGTTCCTGTCTCTT
1 GGACTCAATAATGTTCCTGTCTCTT
7957196 GGACTCAATAATGTTCCTGTCTCTT
1 GGACTCAATAATGTTCCTGTCTCTT
7957221 TCTCCTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.16, T:0.40
Consensus pattern (25 bp):
GGACTCAATAATGTTCCTGTCTCTT
Found at i:7958589 original size:46 final size:45
Alignment explanation
Indices: 7958539--7958713 Score: 149
Period size: 46 Copynumber: 3.8 Consensus size: 45
7958529 TATTTGGGAA
*
7958539 TCCGAGCTCATTGAGTTGAGTCCAAGTTCACTTATGGATACGAATG
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-G
** ** * * * *
7958585 TCCGAGCTTGTTGAGTTGAGTCCGAGTT-TGTGAGATGTAATTAGGCA-
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACT--TATG-GA-TACGAAG
* * *
7958632 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAA-G
* *
7958678 CCCGAGCTCATTGAG-TGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
7958714 GAGGGTTACA
Statistics
Matches: 100, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
44 3 0.03
45 21 0.21
46 41 0.41
47 29 0.29
48 2 0.02
49 4 0.04
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAAG
Found at i:7964625 original size:27 final size:27
Alignment explanation
Indices: 7964587--7964847 Score: 224
Period size: 27 Copynumber: 9.7 Consensus size: 27
7964577 AGCTGTTTAG
*
7964587 ATTACCGAAATACCCCTTATTTGTAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
*
7964614 ATTACCAAAATACCCCT-ATTTTGTAAA
1 ATTACCGAAATACCCCTGA-TTTGTAAA
* **
7964641 ATTACCGAAATACCCCTAATTTGTGGA
1 ATTACCGAAATACCCCTGATTTGTAAA
*** *
7964668 ATTATTAAAATACCCCTGGTTTGTAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
** * *
7964695 ATTATTGAAATA-TCCTCGGTTTGTAAA
1 ATTACCGAAATACCCCT-GATTTGTAAA
* ** *
7964722 ATTACTGAAATACCCCCAATTTATAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
7964749 ATTACCGAAATA-CCCTGAGTTTGTAAA
1 ATTACCGAAATACCCCTGA-TTTGTAAA
* * *
7964776 ATTATCAAAATACCCCCGATTTGTAAA
1 ATTACCGAAATACCCCTGATTTGTAAA
* ** *
7964803 ATTATCGAAATACCTTTG-TAGTGTAAA
1 ATTACCGAAATACCCCTGAT-TTGTAAA
* *
7964830 ATTATCGAAAAACCCCTG
1 ATTACCGAAATACCCCTG
7964848 TAGGGTAAAA
Statistics
Matches: 193, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 9 0.05
27 176 0.91
28 8 0.04
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGATTTGTAAA
Found at i:7965238 original size:22 final size:22
Alignment explanation
Indices: 7965213--7965291 Score: 79
Period size: 22 Copynumber: 3.6 Consensus size: 22
7965203 TTAATCTGAT
*
7965213 TATGGCTTTGTGCCAATCTAAA
1 TATGGCTCTGTGCCAATCTAAA
* * * *
7965235 TATGGCTCTGTG-CTATGTTGAT
1 TATGGCTCTGTGCCAAT-CTAAA
* *
7965257 TATGGCTATGTGCCAACCTAAA
1 TATGGCTCTGTGCCAATCTAAA
7965279 TATGGCTCTGTGC
1 TATGGCTCTGTGC
7965292 TATGTTGATT
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
21 3 0.07
22 38 0.88
23 2 0.05
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.37
Consensus pattern (22 bp):
TATGGCTCTGTGCCAATCTAAA
Found at i:7965263 original size:44 final size:44
Alignment explanation
Indices: 7965209--7965318 Score: 193
Period size: 44 Copynumber: 2.5 Consensus size: 44
7965199 CTGCTTAATC
7965209 TGATTATGGCTTTGTGCCAATCTAAATATGGCTCTGTGCTATGT
1 TGATTATGGCTTTGTGCCAATCTAAATATGGCTCTGTGCTATGT
* *
7965253 TGATTATGGCTATGTGCCAACCTAAATATGGCTCTGTGCTATGT
1 TGATTATGGCTTTGTGCCAATCTAAATATGGCTCTGTGCTATGT
*
7965297 TGATTATGGCTTTGTGCAAATC
1 TGATTATGGCTTTGTGCCAATC
7965319 GTATTTACTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 61 1.00
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (44 bp):
TGATTATGGCTTTGTGCCAATCTAAATATGGCTCTGTGCTATGT
Found at i:7965304 original size:22 final size:22
Alignment explanation
Indices: 7965235--7965313 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 22
7965225 CCAATCTAAA
7965235 TATGGCTCTGTGCTATGTTGAT
1 TATGGCTCTGTGCTATGTTGAT
* * *** * *
7965257 TATGGCTATGTGCCAACCTAAA
1 TATGGCTCTGTGCTATGTTGAT
7965279 TATGGCTCTGTGCTATGTTGAT
1 TATGGCTCTGTGCTATGTTGAT
*
7965301 TATGGCTTTGTGC
1 TATGGCTCTGTGC
7965314 AAATCGTATT
Statistics
Matches: 42, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (22 bp):
TATGGCTCTGTGCTATGTTGAT
Found at i:7971327 original size:40 final size:40
Alignment explanation
Indices: 7971243--7971348 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 40
7971233 TACCAGCTCG
* * *
7971243 TAGCCTGCGGGTCTCT-AGCCCGGATAGCATTCTAGCACA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACA
* * *
7971282 AAGCCTGCGGGTCTTTAAGCCTGGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACA
7971322 TAGCCTGCGGGTCTTTAAGCCCGGATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATA
7971349 CAATTCCTCA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 14 0.24
40 44 0.76
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACA
Found at i:7971355 original size:40 final size:40
Alignment explanation
Indices: 7971205--7971355 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
7971195 TTCTAGCACC
** * * * * *
7971205 AGCCTGCGGGAATTTAAACCCGG-TATAATACCAGCTCGT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAT
* * *
7971244 AGCCTGCGGGTCTCT-AGCCCGGATAGC-ATTCTAGCACAA
1 AGCCTGCGGGTCTTTAAGCCCGGATA-CAATTCCAGCACAT
* *
7971283 AGCCTGCGGGTCTTTAAGCCTGGATA-ACATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCACAT
7971323 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCC
7971356 TCAAGTATCA
Statistics
Matches: 90, Mismatches: 16, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
38 6 0.07
39 35 0.39
40 48 0.53
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACAT
Found at i:7977369 original size:40 final size:40
Alignment explanation
Indices: 7977310--7977450 Score: 205
Period size: 40 Copynumber: 3.5 Consensus size: 40
7977300 ACTCGTGGCC
* * * *
7977310 TGCGGGTCTCT-AGCCCGGATAGCATTCTAACACGA-AGCT
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCAC-ATAGCT
7977349 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACATAGCT
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACATAGCT
* *
7977389 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCATATAGCC
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACATAGCT
7977429 TGCGGGTCTTTAAGCCCGGATA
1 TGCGGGTCTTTAAGCCCGGATA
7977451 CAATTCCTCA
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 11 0.12
40 83 0.88
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACATAGCT
Found at i:7979534 original size:27 final size:27
Alignment explanation
Indices: 7979504--7979558 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7979494 CATAATGTTC
* **
7979504 AATAGAACTAGAGATCGTAATTTCTTT
1 AATAGAACTAGAAATAATAATTTCTTT
*
7979531 AATAGAACTCGAAATAATAATTTCTTT
1 AATAGAACTAGAAATAATAATTTCTTT
7979558 A
1 A
7979559 TTCTCATCTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (27 bp):
AATAGAACTAGAAATAATAATTTCTTT
Found at i:7979784 original size:42 final size:41
Alignment explanation
Indices: 7979737--7979889 Score: 108
Period size: 42 Copynumber: 3.6 Consensus size: 41
7979727 TTAGATGCCA
* **
7979737 ATGCCATGTACCAGACATGGTCTTACATGGGATCTCACATCG
1 ATGCCATGT-CCAGACATGGTCTTACACGAAATCTCACATCG
* * * * * *
7979779 ATGCCATATCCCATATATGGTCTTATACGAAATCTCACTTTG
1 ATGCCATGT-CCAGACATGGTCTTACACGAAATCTCACATCG
* * * * *
7979821 ATGTCATGTCCTAGACATGGTCTTATACTAAATCTCATATCA
1 ATGCCATGTCC-AGACATGGTCTTACACGAAATCTCACATCG
* * * *
7979863 ACGCCATATCCCAGATATTGTCTTACA
1 ATGCCATGT-CCAGACATGGTCTTACA
7979890 TGATCACATA
Statistics
Matches: 84, Mismatches: 25, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
41 2 0.02
42 80 0.95
43 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (41 bp):
ATGCCATGTCCAGACATGGTCTTACACGAAATCTCACATCG
Found at i:7981300 original size:38 final size:38
Alignment explanation
Indices: 7981213--7981407 Score: 248
Period size: 38 Copynumber: 5.0 Consensus size: 38
7981203 AAACCCAAAC
* * * *
7981213 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* *
7981253 ATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
7981291 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
7981329 ATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * *
7981367 ATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGAT
1 ATAATACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGAT
7981407 A
1 A
7981408 CACATCAAAT
Statistics
Matches: 139, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
37 1 0.01
38 100 0.72
39 8 0.06
40 30 0.22
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:7986023 original size:45 final size:44
Alignment explanation
Indices: 7985939--7986023 Score: 107
Period size: 45 Copynumber: 1.9 Consensus size: 44
7985929 ATGTAATCTG
* *
7985939 AACTCATTGAGTTATGTCTGAGTTCATGATATATGTGACATCCA
1 AACTCATTAAGTTATGTCTGAGTTCATGATATATATGACATCCA
* * * *
7985983 AACTCATTAAGTTGTGGTCTGTGTTCGTGATATGTATGACA
1 AACTCATTAAGTTAT-GTCTGAGTTCATGATATATATGACA
7986024 CATGTTTTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 13 0.38
45 21 0.62
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (44 bp):
AACTCATTAAGTTATGTCTGAGTTCATGATATATATGACATCCA
Found at i:7987568 original size:29 final size:31
Alignment explanation
Indices: 7987495--7987571 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
7987485 GTGTCCCAAG
* * *
7987495 CCACACTGGCGTGTGTGACCATACGACCTAC
1 CCACACGGGCGTGTGTGACAACACGACCTAC
*
7987526 CCACACGGGCGTGTGTGACAACACGGCCTAC
1 CCACACGGGCGTGTGTGACAACACGACCTAC
*
7987557 CCACACGGGTGTGTG
1 CCACACGGGCGTGTG
7987572 ACTTTCTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.17
Consensus pattern (31 bp):
CCACACGGGCGTGTGTGACAACACGACCTAC
Found at i:7987891 original size:10 final size:9
Alignment explanation
Indices: 7987867--7987892 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7987857 TTCAAGGATC
7987867 TCAAAAACA
1 TCAAAAACA
7987876 TCAAAAACA
1 TCAAAAACA
7987885 TCAAAAAC
1 TCAAAAAC
7987893 TAACATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:7990954 original size:49 final size:49
Alignment explanation
Indices: 7990897--7991130 Score: 288
Period size: 49 Copynumber: 4.7 Consensus size: 49
7990887 ACCTGGCACG
*
7990897 CATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* ** * *
7990946 CATAGTAGCCTGCACTTAGTACTACACACGAGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACA
* * * * *
7990996 CGTAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACA
* * *
7991047 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* * *
7991096 CGTAGTAGCCCGCACTTAGTACTACATACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
7991131 TCACAATAGA
Statistics
Matches: 154, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 72 0.47
50 45 0.29
51 37 0.24
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
Found at i:7993598 original size:21 final size:20
Alignment explanation
Indices: 7993574--7993612 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7993564 AAAACCCTTT
7993574 TTAAAATAAAATAAACCTTAA
1 TTAAAATAAAA-AAACCTTAA
**
7993595 TTAACTTAAAAAAACCTT
1 TTAAAATAAAAAAACCTT
7993613 TCAATTAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (20 bp):
TTAAAATAAAAAAACCTTAA
Found at i:7994711 original size:29 final size:28
Alignment explanation
Indices: 7994654--7994739 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
7994644 TACCTGTATC
*
7994654 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
* *
7994682 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCC-AATCACATTCATA
* ** *
7994711 TCGCCTGTTAAGCCCAGTCACATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
7994739 T
1 T
7994740 TCATGCTCAC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
28 26 0.54
29 22 0.46
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAATCACATTCATA
Found at i:7994980 original size:15 final size:15
Alignment explanation
Indices: 7994948--7994981 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7994938 CATAGCCAAA
*
7994948 CTTTCGGCATTTCGG
1 CTTTCGGCATTTCAG
*
7994963 CTTTCGGCATTTTAG
1 CTTTCGGCATTTCAG
7994978 CTTT
1 CTTT
7994982 TGCCGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (15 bp):
CTTTCGGCATTTCAG
Found at i:8001897 original size:28 final size:28
Alignment explanation
Indices: 8001866--8001939 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
8001856 ATGAATATAT
*
8001866 GCACTATGTGTGCGAGATTAGTAATCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
* *
8001894 GCACTATGTGTGCGAAATTATTAACCGA
1 GCACTATGTGTGCGAGATTAGTAACCGA
8001922 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
8001940 CGGGTGTAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATTAGTAACCGA
Found at i:8009616 original size:28 final size:27
Alignment explanation
Indices: 8009585--8009686 Score: 120
Period size: 28 Copynumber: 3.7 Consensus size: 27
8009575 ATGAATATAT
8009585 GCACTATGTGTGCGAGATTAGTAACCGA
1 GCACTATGTGTGCGAGATT-GTAACCGA
8009613 GCACTATGTGTGCGAGATCGGGTGTAA--G-
1 GCACTATGTGTGCGAGAT----TGTAACCGA
*
8009641 GCACTATGTGTGCGAAATTGTTAACCGA
1 GCACTATGTGTGCGAGATTG-TAACCGA
8009669 GCACTATGTGTGCGAGAT
1 GCACTATGTGTGCGAGAT
8009687 CGGGTGTAAG
Statistics
Matches: 64, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
24 2 0.03
25 3 0.05
27 1 0.02
28 52 0.81
29 1 0.02
31 4 0.06
32 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATTGTAACCGA
Found at i:8009671 original size:56 final size:56
Alignment explanation
Indices: 8009585--8009708 Score: 205
Period size: 56 Copynumber: 2.2 Consensus size: 56
8009575 ATGAATATAT
*
8009585 GCACTATGTGTGCGAGATTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
8009641 GCACTATGTGTGCGAAATT-GTTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAAATTAG-TAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
* *
8009697 GCATTGTGTGTG
1 GCACTATGTGTG
8009709 TGCAAAATTA
Statistics
Matches: 64, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
55 1 0.02
56 63 0.98
ACGTcount: A:0.23, C:0.15, G:0.34, T:0.27
Consensus pattern (56 bp):
GCACTATGTGTGCGAAATTAGTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:8009706 original size:28 final size:28
Alignment explanation
Indices: 8009613--8009708 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
8009603 TAGTAACCGA
8009613 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
* *
8009641 GCACTATGTGTGCGAAAT--TGT-TAACCG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
8009668 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
* *
8009697 GCATTGTGTGTG
1 GCACTATGTGTG
8009709 TGCAAAATTA
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
25 3 0.05
26 2 0.04
27 1 0.02
28 44 0.79
29 1 0.02
30 2 0.04
31 3 0.05
ACGTcount: A:0.22, C:0.15, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:8013387 original size:79 final size:78
Alignment explanation
Indices: 8013285--8013507 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
8013275 GCTCCTCGTT
* *
8013285 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
8013350 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
8013365 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
8013429 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
8013443 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
8013506 GA
63 GA
8013508 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:8013402 original size:39 final size:40
Alignment explanation
Indices: 8013285--8013507 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
8013275 GCTCCTCGTT
* *
8013285 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
8013325 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
8013365 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
8013404 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
8013443 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
8013484 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8013508 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:8015651 original size:43 final size:43
Alignment explanation
Indices: 8015590--8015766 Score: 232
Period size: 43 Copynumber: 4.1 Consensus size: 43
8015580 ATATTCTACA
* * *
8015590 ATGCCAACATCCCAGACGTGATCTTACATGTAATCACATATCG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACATATCG
* * * *
8015633 ATGCCAACGTCCTAGACGTGGTCATACACATAATTACATAAT-G
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACAT-ATCG
* *
8015676 ATGCCAACATCC-CGACGTGGTCTTACACGTAATCACATACCG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACATATCG
* *
8015718 ATGCCAACATTCTAGACGTGGTCTTACACGTAATTACATATCG
1 ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACATATCG
8015761 ATGCCA
1 ATGCCA
8015767 CATATACATC
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
41 1 0.01
42 34 0.30
43 77 0.68
44 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCTAGACGTGGTCTTACACGTAATCACATATCG
Found at i:8015734 original size:85 final size:86
Alignment explanation
Indices: 8015590--8015766 Score: 268
Period size: 85 Copynumber: 2.1 Consensus size: 86
8015580 ATATTCTACA
* * *
8015590 ATGCCAACATCCCAGACGTGATCTTACATGTAATCACATATCGATGCCAACGTCCTAGACGTGGT
1 ATGCCAACATCCCAGACGTGATCTTACACGTAATCACATACCGATGCCAACATCCTAGACGTGGT
8015655 CATACACATAATTACATAAT-G
66 CATACACATAATTACAT-ATCG
* *
8015676 ATGCCAACATCCC-GACGTGGTCTTACACGTAATCACATACCGATGCCAACATTCTAGACGTGGT
1 ATGCCAACATCCCAGACGTGATCTTACACGTAATCACATACCGATGCCAACATCCTAGACGTGGT
* *
8015740 CTTACACGTAATTACATATCG
66 CATACACATAATTACATATCG
8015761 ATGCCA
1 ATGCCA
8015767 CATATACATC
Statistics
Matches: 83, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
84 2 0.02
85 68 0.82
86 13 0.16
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (86 bp):
ATGCCAACATCCCAGACGTGATCTTACACGTAATCACATACCGATGCCAACATCCTAGACGTGGT
CATACACATAATTACATATCG
Found at i:8017313 original size:13 final size:13
Alignment explanation
Indices: 8017295--8017321 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8017285 GGAGTAATTG
8017295 CACACGGGCGTGT
1 CACACGGGCGTGT
8017308 CACACGGGCGTGT
1 CACACGGGCGTGT
8017321 C
1 C
8017322 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:8030975 original size:45 final size:44
Alignment explanation
Indices: 8030891--8030975 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
8030881 ATGTAATCTG
* *
8030891 AACTCATTGAGTTGTGTCTGAGTTCATGATATATGTGACATCCT
1 AACTCATTAAGTTGTGTCTGAGTTCATGATATATATGACATCCT
* *
8030935 AACTCATTAAGTTGTGGTCTGAGTTCGTGATATGTATGACA
1 AACTCATTAAGTTGT-GTCTGAGTTCATGATATATATGACA
8030976 CATGTTTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 14 0.39
45 22 0.61
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (44 bp):
AACTCATTAAGTTGTGTCTGAGTTCATGATATATATGACATCCT
Found at i:8031786 original size:10 final size:10
Alignment explanation
Indices: 8031771--8031801 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
8031761 TTTAATGTGG
8031771 TTATGGTTGA
1 TTATGGTTGA
8031781 TTATGGTTGA
1 TTATGGTTGA
8031791 TTATGGTTGA
1 TTATGGTTGA
8031801 T
1 T
8031802 GAGTGAGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (10 bp):
TTATGGTTGA
Found at i:8032801 original size:10 final size:9
Alignment explanation
Indices: 8032777--8032802 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8032767 TTCAAGGATC
8032777 TCAAAAACA
1 TCAAAAACA
8032786 TCAAAAACA
1 TCAAAAACA
8032795 TCAAAAAC
1 TCAAAAAC
8032803 TAACATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:8035731 original size:51 final size:49
Alignment explanation
Indices: 8035666--8035798 Score: 176
Period size: 49 Copynumber: 2.7 Consensus size: 49
8035656 AACCATCTGA
* * * *
8035666 TACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGG
1 TACACATAGTAGCCTACACTTAGTACTACACACGCGA-CCAA-TAATCGGG
* * *
8035717 TACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGG
1 TACACATAGTAGCCTACACTTAGTACTACACACGCGACCAATAATCGGG
*
8035766 TACACGTAGTAGCCTACACTTAGTACTACACAC
1 TACACATAGTAGCCTACACTTAGTACTACACAC
8035799 ATGACCTCAC
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 36 0.50
50 3 0.04
51 33 0.46
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (49 bp):
TACACATAGTAGCCTACACTTAGTACTACACACGCGACCAATAATCGGG
Found at i:8035787 original size:49 final size:51
Alignment explanation
Indices: 8035660--8035798 Score: 192
Period size: 51 Copynumber: 2.8 Consensus size: 51
8035650 AGACATAACC
* * * *
8035660 ATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTT
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGCGATCCAAGTA
* * * *
8035711 ATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGA-CCAA-TA
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGCGATCCAAGTA
8035760 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACAC
1 ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACAC
8035799 ATGACCTCAC
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
49 36 0.47
50 3 0.04
51 37 0.49
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (51 bp):
ATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGCGATCCAAGTA
Found at i:8040517 original size:40 final size:40
Alignment explanation
Indices: 8040434--8040696 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
8040424 TTGAATGCTG
* * * * * *
8040434 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
8040474 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
8040514 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
8040554 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
8040594 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
8040634 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
8040673 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
8040697 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:8040716 original size:79 final size:80
Alignment explanation
Indices: 8040473--8040731 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
8040463 AAGTGAATAT
* * * * * *
8040473 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
8040537 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
8040553 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
8040618 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
8040633 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
8040697 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
8040712 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
8040732 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:8048467 original size:40 final size:40
Alignment explanation
Indices: 8048384--8048646 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
8048374 TTGAATGCTG
* * * * * *
8048384 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
8048424 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
8048464 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
8048504 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
8048544 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
8048584 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
8048623 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
8048647 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:8048666 original size:79 final size:80
Alignment explanation
Indices: 8048423--8048681 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
8048413 AAGTGAATAT
* * * * * *
8048423 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
8048487 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
8048503 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
8048568 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
8048583 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
8048647 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
8048662 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
8048682 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:8050469 original size:29 final size:29
Alignment explanation
Indices: 8050399--8050513 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
8050389 ACCCCTTACA
* * *
8050399 AAAT-ACCTGTATCTGGCCCATTAAGCCC
1 AAATCACCTATATATGGCCCATTAGGCCC
8050427 -AATCA--TATTCATATGGCCCATTAGGCCC
1 AAATCACCTA-T-ATATGGCCCATTAGGCCC
8050455 AAATCACCTATATATGGCCCATTAGGCCC
1 AAATCACCTATATATGGCCCATTAGGCCC
* * * *
8050484 AAATCACATTTGTATGGCCCGTTAGGCCC
1 AAATCACCTATATATGGCCCATTAGGCCC
8050513 A
1 A
8050514 GTAACATTCA
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
26 1 0.01
27 4 0.05
28 17 0.23
29 49 0.66
30 1 0.01
31 2 0.03
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
AAATCACCTATATATGGCCCATTAGGCCC
Found at i:8050475 original size:57 final size:57
Alignment explanation
Indices: 8050399--8050513 Score: 151
Period size: 58 Copynumber: 2.0 Consensus size: 57
8050389 ACCCCTTACA
* * *
8050399 AAATACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCC
1 AAATACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCC
* ** *
8050455 AAATCACCTATATATGGCCCATTAGGCCCAAATCACATTTGTATGGCCCGTTAGGCCC
1 AAAT-ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCC
8050513 A
1 A
8050514 GTAACATTCA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 4 0.08
57 21 0.42
58 25 0.50
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (57 bp):
AAATACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCC
Found at i:8055296 original size:36 final size:36
Alignment explanation
Indices: 8055249--8055321 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
8055239 TTCATAAGTT
8055249 AATCAAAATGACACCATCTAGCAAGGTATCTGTAAC
1 AATCAAAATGACACCATCTAGCAAGGTATCTGTAAC
*
8055285 AATCAAAATGACACCATTTAGCAAGGTATCTGTAAC
1 AATCAAAATGACACCATCTAGCAAGGTATCTGTAAC
8055321 A
1 A
8055322 CCCTTATCCG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (36 bp):
AATCAAAATGACACCATCTAGCAAGGTATCTGTAAC
Found at i:8056973 original size:21 final size:21
Alignment explanation
Indices: 8056947--8056989 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8056937 CATAACTCAA
8056947 AGACATACTCACCAATGGCTT
1 AGACATACTCACCAATGGCTT
8056968 AGACATACTCACCAATGGCTT
1 AGACATACTCACCAATGGCTT
8056989 A
1 A
8056990 TCTCATTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (21 bp):
AGACATACTCACCAATGGCTT
Found at i:8064920 original size:320 final size:320
Alignment explanation
Indices: 8064338--8064978 Score: 1282
Period size: 320 Copynumber: 2.0 Consensus size: 320
8064328 TCATTTTTTT
8064338 CTCCTATAGCAACATCAAATTCGCACTCTAACTTGTACTTATGAACATTAGGTATTTTTACTGAT
1 CTCCTATAGCAACATCAAATTCGCACTCTAACTTGTACTTATGAACATTAGGTATTTTTACTGAT
8064403 TATGTCATTTTACTCGTTTTCACGTAAAATCGCTTAGGAAAAGTTGTTTTACACAATTTCAAGCT
66 TATGTCATTTTACTCGTTTTCACGTAAAATCGCTTAGGAAAAGTTGTTTTACACAATTTCAAGCT
8064468 TCAGATTTTACCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAAATATAAA
131 TCAGATTTTACCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAAATATAAA
8064533 CCCTAGGTTAAATTATTGCTAGAATAAGCTTAACCAAGTTACCGGGATTTCAAAAACGTAAAGAA
196 CCCTAGGTTAAATTATTGCTAGAATAAGCTTAACCAAGTTACCGGGATTTCAAAAACGTAAAGAA
8064598 CTTTAAAAACGAGGCTAGGGAGCACTTACAATCGAGCTTGGGAGTTTGAACAAACCTTAA
261 CTTTAAAAACGAGGCTAGGGAGCACTTACAATCGAGCTTGGGAGTTTGAACAAACCTTAA
8064658 CTCCTATAGCAACATCAAATTCGCACTCTAACTTGTACTTATGAACATTAGGTATTTTTACTGAT
1 CTCCTATAGCAACATCAAATTCGCACTCTAACTTGTACTTATGAACATTAGGTATTTTTACTGAT
8064723 TATGTCATTTTACTCGTTTTCACGTAAAATCGCTTAGGAAAAGTTGTTTTACACAATTTCAAGCT
66 TATGTCATTTTACTCGTTTTCACGTAAAATCGCTTAGGAAAAGTTGTTTTACACAATTTCAAGCT
8064788 TCAGATTTTACCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAAATATAAA
131 TCAGATTTTACCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAAATATAAA
8064853 CCCTAGGTTAAATTATTGCTAGAATAAGCTTAACCAAGTTACCGGGATTTCAAAAACGTAAAGAA
196 CCCTAGGTTAAATTATTGCTAGAATAAGCTTAACCAAGTTACCGGGATTTCAAAAACGTAAAGAA
8064918 CTTTAAAAACGAGGCTAGGGAGCACTTACAATCGAGCTTGGGAGTTTGAACAAACCTTAA
261 CTTTAAAAACGAGGCTAGGGAGCACTTACAATCGAGCTTGGGAGTTTGAACAAACCTTAA
8064978 C
1 C
8064979 CATGGCTACT
Statistics
Matches: 321, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
320 321 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.32
Consensus pattern (320 bp):
CTCCTATAGCAACATCAAATTCGCACTCTAACTTGTACTTATGAACATTAGGTATTTTTACTGAT
TATGTCATTTTACTCGTTTTCACGTAAAATCGCTTAGGAAAAGTTGTTTTACACAATTTCAAGCT
TCAGATTTTACCATAAAACATCAAAATAAACACATTTCACCTATGGGTATTTTTCCAAATATAAA
CCCTAGGTTAAATTATTGCTAGAATAAGCTTAACCAAGTTACCGGGATTTCAAAAACGTAAAGAA
CTTTAAAAACGAGGCTAGGGAGCACTTACAATCGAGCTTGGGAGTTTGAACAAACCTTAA
Found at i:8072315 original size:37 final size:37
Alignment explanation
Indices: 8072265--8072338 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
8072255 AGTTGAGTTC
8072265 TACATGTTAAAGGTGTCCAATTGTTATGAGATTTTAA
1 TACATGTTAAAGGTGTCCAATTGTTATGAGATTTTAA
8072302 TACATGTTAAAGGTGTCCAATTGTTATGAGATTTTAA
1 TACATGTTAAAGGTGTCCAATTGTTATGAGATTTTAA
8072339 ATTATAGGTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (37 bp):
TACATGTTAAAGGTGTCCAATTGTTATGAGATTTTAA
Found at i:8092479 original size:40 final size:40
Alignment explanation
Indices: 8092424--8092629 Score: 360
Period size: 40 Copynumber: 5.2 Consensus size: 40
8092414 GGACTAAGAT
* * *
8092424 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
8092464 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
8092504 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
8092544 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
8092584 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
8092623 CCGAAGG
1 CCGAAGG
8092630 TACTTGGGTT
Statistics
Matches: 161, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 15 0.09
40 146 0.91
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:8107295 original size:40 final size:40
Alignment explanation
Indices: 8107240--8107499 Score: 434
Period size: 40 Copynumber: 6.5 Consensus size: 40
8107230 NNNNNNNNNN
8107240 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
8107280 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
*
8107320 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
*
8107360 ATCCGGGCTAAGTCTCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
* *
8107400 ATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
* *
8107440 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACTAT
*
8107480 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
8107500 TACTGGGGTT
Statistics
Matches: 207, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 14 0.07
40 190 0.92
41 3 0.01
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.29
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
Found at i:8122802 original size:3 final size:3
Alignment explanation
Indices: 8122796--8122820 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8122786 TAATTACTAC
8122796 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
8122821 TTTCATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:8124429 original size:68 final size:62
Alignment explanation
Indices: 8124314--8124497 Score: 181
Period size: 63 Copynumber: 2.8 Consensus size: 62
8124304 ACAGATAGTG
** * * *
8124314 TGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACAAGACATTA
1 TGTAGCTAGGTCACATGGGTGGTAC-GAGTGTACACCATGTGTACAAGAGAGCTAC--GACA-TA
8124379 TGA
62 --A
* *
8124382 TGTAGCTAGGTCACATGGGTGATACGATGTGTACACCATGTAG-ACAAGAGAGCTACGAGATAA
1 TGTAGCTAGGTCACATGGGTGGTACGA-GTGTACACCATGT-GTACAAGAGAGCTACGACATAA
** * *
8124445 ACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 TGTAGCTAGGTCACATGGGTGGTAC-GAGTGTACACCATGTGTACAAGAGAGC
8124498 CAAAATTATG
Statistics
Matches: 100, Mismatches: 12, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
62 1 0.01
63 45 0.45
64 1 0.01
65 2 0.02
66 3 0.03
67 2 0.02
68 45 0.45
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (62 bp):
TGTAGCTAGGTCACATGGGTGGTACGAGTGTACACCATGTGTACAAGAGAGCTACGACATAA
Found at i:8125091 original size:68 final size:67
Alignment explanation
Indices: 8125019--8125168 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
8125009 CATCATGTGT
* * * *
8125019 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
8125081 ATGTAG
62 ATGTAG
** * *
8125087 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
8125152 AG
66 AG
8125154 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
8125169 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:8125124 original size:64 final size:64
Alignment explanation
Indices: 8125043--8125226 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
8125033 AGACATTATG
* *
8125043 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
8125107 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
8125172 AA
63 AA
* * * *
8125174 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
8125227 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:8131110 original size:16 final size:18
Alignment explanation
Indices: 8131089--8131121 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
8131079 CATACTAGCT
8131089 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
8131105 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
8131122 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:8131776 original size:45 final size:45
Alignment explanation
Indices: 8131662--8131822 Score: 213
Period size: 45 Copynumber: 3.6 Consensus size: 45
8131652 CCGAAATTTC
* *
8131662 GCCTGCTAGGCTCGAAG-CCCG-ATA-TCATTTCACCGACATTATA
1 GCCTGCTAGGCTCGAAGCCCCGAATAGT-ATCTCACCGGCATTATA
*
8131705 G-CTGCTAGGCTTGAAGCCCCGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCCGAATAGTATCTCACCGGCATTATA
* * * *
8131749 GCCTGCTTGGCTCAAAGTCCTGAATAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCCGAATAGTATCTCACCGGCATTATA
*
8131794 GCCTGCTAGGCTCGAAGGCCCGAATAGTA
1 GCCTGCTAGGCTCGAAGCCCCGAATAGTA
8131823 CTGTACGATA
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
42 14 0.14
43 5 0.05
44 19 0.19
45 64 0.63
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (45 bp):
GCCTGCTAGGCTCGAAGCCCCGAATAGTATCTCACCGGCATTATA
Found at i:8132689 original size:47 final size:47
Alignment explanation
Indices: 8132637--8132732 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
8132627 AAAATTTTCT
* * *
8132637 TTAACTAAGTAACTTATCCGGAAATATTAAGGGCAAATTTAATAAGC
1 TTAACTAAGTAAATTATCCGGAAATATTAAGAGCAAATTTAACAAGC
8132684 TTAACTAAGTAAATTATCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAAATTATCCGGAAATATTAAGAGCAAATTTAACAAGC
8132731 TT
1 TT
8132733 TAAATTCAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (47 bp):
TTAACTAAGTAAATTATCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:8135276 original size:37 final size:37
Alignment explanation
Indices: 8135226--8135304 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
8135216 TTATTACGAA
* * *
8135226 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
8135263 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
8135300 GTCTT
1 GTCTT
8135305 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:8135501 original size:47 final size:47
Alignment explanation
Indices: 8135423--8135755 Score: 594
Period size: 47 Copynumber: 7.1 Consensus size: 47
8135413 CCCTTCGGGA
* * * * * *
8135423 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8135470 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8135517 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8135564 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8135611 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8135658 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8135705 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8135752 CTTA
1 CTTA
8135756 CTATCATTTC
Statistics
Matches: 276, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8139758 original size:27 final size:27
Alignment explanation
Indices: 8139726--8140509 Score: 852
Period size: 27 Copynumber: 29.2 Consensus size: 27
8139716 TAGTTTACAA
* *
8139726 AATTACTAAAATACCCCTTTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
8139753 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
8139780 AAATGCTGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
8139807 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
8139834 AATTA-TCGAAATACCCTTATAGGGTAA
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * * *
8139861 AAATACCGAAATAGCCATGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
8139888 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
8139915 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
8139942 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
8139969 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
8139996 AAATATTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
8140023 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** * *
8140050 AATTACCAAAATACCCTTGTAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
8140077 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
8140104 AATTACCGAGANT-----T-TAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
* *
8140126 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
8140153 AAATGCTGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
8140180 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
8140207 AATTA-TCGAAATACCCTTATAGGGTAA
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * * *
8140234 AAATACCGAAATAGCCATGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
8140261 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
8140288 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
8140315 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
8140342 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
8140369 AAATATTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
8140396 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** * *
8140423 AATTACCAAAATACCCTTGTAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
8140450 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
8140477 AATTACCGAGATACCCTTGT-GGGATAA
1 AATTACTGAAATACCCCTGTAGGG-TAG
8140504 AATTAC
1 AATTAC
8140510 CATTTTGCCC
Statistics
Matches: 640, Mismatches: 101, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
21 2 0.00
22 17 0.03
23 1 0.00
26 8 0.01
27 610 0.95
28 2 0.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:8140750 original size:27 final size:27
Alignment explanation
Indices: 8140712--8140814 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
8140702 TGGAGGAAGC
*
8140712 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
8140739 GTTCTGGTGGCTCCGCCATAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* *
8140766 GTTCTAGTGGCTCTACCAC-AATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
8140792 TTATCTGGTGACTCTGTCACAAA
1 GT-TCTGGTGGCTCTGCCACAAA
8140815 AAATCTATTT
Statistics
Matches: 62, Mismatches: 12, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
26 8 0.13
27 52 0.84
28 2 0.03
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:8140985 original size:12 final size:12
Alignment explanation
Indices: 8140968--8140998 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8140958 TTCTGTCACC
*
8140968 TGATTCTGATTT
1 TGATTCTCATTT
8140980 TGATTCTCATTT
1 TGATTCTCATTT
8140992 TGATTCT
1 TGATTCT
8140999 AGTTCTGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.13, G:0.13, T:0.58
Consensus pattern (12 bp):
TGATTCTCATTT
Found at i:8151482 original size:93 final size:93
Alignment explanation
Indices: 8151370--8151540 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
8151360 GCCCATAAGT
* *
8151370 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8151435 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
8151463 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
8151528 CGAGTTCGGATGC
66 CGAGCTCGGATGC
8151541 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:8151537 original size:46 final size:46
Alignment explanation
Indices: 8151362--8151537 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
8151352 TGTAACCCGC
* *
8151362 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
8151408 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
8151454 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
8151501 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
8151538 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:8153973 original size:30 final size:30
Alignment explanation
Indices: 8153929--8154017 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
8153919 CAAAGATAAC
8153929 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
8153958 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
8153988 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
8154018 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:8153977 original size:15 final size:15
Alignment explanation
Indices: 8153929--8154008 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
8153919 CAAAGATAAC
*
8153929 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
8153943 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
8153958 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
8153973 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
8153988 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
8154003 AAGAAA
1 AAGAAA
8154009 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:8154017 original size:15 final size:15
Alignment explanation
Indices: 8153940--8154017 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
8153930 AGAAAACCGA
8153940 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
8153955 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
8153969 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
8153984 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
8154000 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
8154015 ATA
1 ATA
8154018 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:8157057 original size:93 final size:93
Alignment explanation
Indices: 8156945--8157115 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
8156935 GCCCATAAGT
* *
8156945 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8157010 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
8157038 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8157103 CGAGTTCGGATGC
66 CGAGTTCGGATGC
8157116 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8157112 original size:46 final size:46
Alignment explanation
Indices: 8156937--8157112 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
8156927 TGTAACCCGC
* * *
8156937 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
8156983 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
8157033 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
8157076 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
8157113 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:8170092 original size:29 final size:28
Alignment explanation
Indices: 8170051--8170130 Score: 108
Period size: 29 Copynumber: 2.8 Consensus size: 28
8170041 GAGTGTAAAA
*
8170051 GTGATTGGGCCTAGTAGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
*
8170079 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
*
8170108 GAGATTGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAGTGGGCCATA
8170131 AGCATGTATG
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.48
29 23 0.50
30 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:8172253 original size:46 final size:46
Alignment explanation
Indices: 8172203--8172378 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
8172193 TGGTTGAGCA
8172203 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8172249 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8172294 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8172342 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8172379 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:8172359 original size:93 final size:93
Alignment explanation
Indices: 8172200--8172371 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
8172190 GGATGGTTGA
* *
8172200 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8172265 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
8172293 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
8172358 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
8172372 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8178967 original size:20 final size:20
Alignment explanation
Indices: 8178944--8178993 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
8178934 ATAATTCTTA
8178944 AATTTTTATTAAAATTTAAT
1 AATTTTTATTAAAATTTAAT
*
8178964 AATTTTT-TCTAAAATTTATT
1 AATTTTTAT-TAAAATTTAAT
*
8178984 ATTTTTTATT
1 AATTTTTATT
8178994 TTTTATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
AATTTTTATTAAAATTTAAT
Found at i:8179016 original size:27 final size:26
Alignment explanation
Indices: 8178965--8179018 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
8178955 AAATTTAATA
* *
8178965 ATTTTTTCTAAAATTTATTATTTTTT
1 ATTTTTTATAAAATTTATTAATTTTT
*
8178991 ATTTTTTATAAAATTTTTCTAATTTTT
1 ATTTTTTATAAAATTTAT-TAATTTTT
8179018 A
1 A
8179019 ATAAGAGCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (26 bp):
ATTTTTTATAAAATTTATTAATTTTT
Found at i:8182392 original size:22 final size:22
Alignment explanation
Indices: 8182351--8182394 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
8182341 TTTATCTAAA
8182351 ATTATTTAAAATAATATAAAAT
1 ATTATTTAAAATAATATAAAAT
8182373 ATTATATTAATAA-AAT-TAAAAT
1 ATTAT-TTAA-AATAATATAAAAT
8182395 TTAAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
23 7 0.35
24 2 0.10
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTATTTAAAATAATATAAAAT
Found at i:8183878 original size:46 final size:46
Alignment explanation
Indices: 8183814--8183920 Score: 196
Period size: 46 Copynumber: 2.3 Consensus size: 46
8183804 TCCTTCACGA
*
8183814 CTTCTTTTTCTTCTTCTTTTGTATCTAGTGGCTAAGCTGAATACTT
1 CTTCTTCTTCTTCTTCTTTTGTATCTAGTGGCTAAGCTGAATACTT
*
8183860 CTTCTTCTTCTTCTTCTTTTGTATCTAGTGGGTAAGCTGAATACTT
1 CTTCTTCTTCTTCTTCTTTTGTATCTAGTGGCTAAGCTGAATACTT
8183906 CTTCTTCTTCTTCTT
1 CTTCTTCTTCTTCTT
8183921 TGTTGGTTCT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.13, C:0.21, G:0.12, T:0.53
Consensus pattern (46 bp):
CTTCTTCTTCTTCTTCTTTTGTATCTAGTGGCTAAGCTGAATACTT
Found at i:8191727 original size:43 final size:43
Alignment explanation
Indices: 8191677--8191771 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 43
8191667 TTACGACTTT
*
8191677 TTCTTCTTTTATATCTAGTGACTAAGCCGAATACTTCTTCTTC
1 TTCTTCTTTTATATCAAGTGACTAAGCCGAATACTTCTTCTTC
* * *
8191720 TTCTTCTTTTGTATCAAGTGGCTAAGCTGAATACTTCTTCTTC
1 TTCTTCTTTTATATCAAGTGACTAAGCCGAATACTTCTTCTTC
8191763 TTC-TCTTTT
1 TTCTTCTTTT
8191772 GGTGGTCTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.18, C:0.22, G:0.11, T:0.49
Consensus pattern (43 bp):
TTCTTCTTTTATATCAAGTGACTAAGCCGAATACTTCTTCTTC
Found at i:8199093 original size:31 final size:31
Alignment explanation
Indices: 8199010--8199095 Score: 120
Period size: 31 Copynumber: 2.8 Consensus size: 31
8199000 TCAATCTCAG
* *
8199010 CATAT-ACTGGGCCGAAGCCTTCACATTATT
1 CATATCACTGGGCCAAAGCCTTTACATTATT
* * *
8199040 CATGTCACTAGGCCAAAGCCTTTTCATTATT
1 CATATCACTGGGCCAAAGCCTTTACATTATT
8199071 CATATCACTGGGCCAAAGCCTTTAC
1 CATATCACTGGGCCAAAGCCTTTAC
8199096 TGTAACGATA
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCAAAGCCTTTACATTATT
Found at i:8199334 original size:25 final size:25
Alignment explanation
Indices: 8199306--8199358 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
8199296 GCCTAGCCTC
*
8199306 TTTTAAT-AACTGGGGCAAAAACCCT
1 TTTTAATAAACTAGGGC-AAAACCCT
* *
8199331 TTTTGATAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAACCCT
8199356 TTT
1 TTT
8199359 CGGTAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAACCCT
Found at i:8199541 original size:25 final size:25
Alignment explanation
Indices: 8199513--8199560 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8199503 ATAATTAAAC
* **
8199513 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
8199538 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
8199561 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:8204000 original size:38 final size:38
Alignment explanation
Indices: 8203957--8204172 Score: 164
Period size: 38 Copynumber: 5.2 Consensus size: 38
8203947 TTTCAAATTA
8203957 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
1 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
* *
8203995 ACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTATAACTGTGGCATATCCACTTAGCACCACG-T--T
* *
8204036 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACTGTGGCATATCCACTTAGCACCACGTT
* * * * *
8204080 ACATGTTTAGCCGTGGTATATCCACTTAGCACCACATT
1 ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
*
8204118 A-ATGAATCAATATATGTAATCGTGGCATATCCACTTAGCACCACGTT
1 ACATG------TATA---ACT-GTGGCATATCCACTTAGCACCACGTT
8204165 ACATGTAT
1 ACATGTAT
8204173 CAATATGTGT
Statistics
Matches: 141, Mismatches: 17, Indels: 36
0.73 0.09 0.19
Matches are distributed among these distances:
37 3 0.02
38 63 0.45
39 1 0.01
40 3 0.02
41 2 0.01
42 4 0.03
43 4 0.03
44 2 0.01
45 3 0.02
46 1 0.01
47 52 0.37
48 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (38 bp):
ACATGTATAACTGTGGCATATCCACTTAGCACCACGTT
Found at i:8204071 original size:85 final size:85
Alignment explanation
Indices: 8203964--8204170 Score: 369
Period size: 85 Copynumber: 2.4 Consensus size: 85
8203954 TTAACATGTA
* *
8203964 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
8204029 CGTTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
*
8204049 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAGCCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
8204114 CATTAATGAATCAATATATG
66 CATTAATGAATCAATATATG
*
8204134 TAATCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
8204171 ATCAATATGT
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 117 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CATTAATGAATCAATATATG
Found at i:8204189 original size:48 final size:47
Alignment explanation
Indices: 8204091--8204212 Score: 199
Period size: 48 Copynumber: 2.6 Consensus size: 47
8204081 CATGTTTAGC
*
8204091 CGTGGTATATCCACTTAGCACCACATTAATGAATCAATATATGTAAT
1 CGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAT
* * *
8204138 CGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAAT
1 CGTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAAT
8204186 CGTGGTATATCCACTTAGCACCACGTT
1 CGTGGTATATCCACTTAGCACCACGTT
8204213 TTTTCATTCC
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
47 26 0.38
48 43 0.62
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (47 bp):
CGTGGTATATCCACTTAGCACCACGTTAATGAATCAATATATGTAAT
Found at i:8205496 original size:53 final size:53
Alignment explanation
Indices: 8205424--8205530 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
8205414 ACAATTTAGT
*
8205424 CCTTTTTACTAAATTGAGTGCCCAAACGTCGAAATTTTCGAACGAAATTTTCA
1 CCTTTTTACTAAATTGAGTGCCCAAACGTCAAAATTTTCGAACGAAATTTTCA
* *
8205477 CCTTTTTACTAAATTGAGTGCCTAAATGTCAAAATTTTCGAACGAAATTTTCA
1 CCTTTTTACTAAATTGAGTGCCCAAACGTCAAAATTTTCGAACGAAATTTTCA
8205530 C
1 C
8205531 GAAATCATTC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (53 bp):
CCTTTTTACTAAATTGAGTGCCCAAACGTCAAAATTTTCGAACGAAATTTTCA
Found at i:8207016 original size:22 final size:22
Alignment explanation
Indices: 8206968--8207026 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
8206958 GTAAATACGT
*
8206968 TTGGCACGAAGCCATAATCAAG
1 TTGGCACAAAGCCATAATCAAG
* * * *
8206990 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAATCAAG
*
8207012 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
8207027 CGATAATGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:8207415 original size:27 final size:27
Alignment explanation
Indices: 8207382--8207836 Score: 455
Period size: 27 Copynumber: 16.9 Consensus size: 27
8207372 GGTATCTCAG
*
8207382 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
8207409 TATTTCTACCCTACAAAGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
8207436 TAATTCTACCCTACAGGGGTGTTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
8207462 GTAATTCTACCCTACAAGGTTTTTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
8207490 TAATTCTACCTTA-TAGGAGTATTTC-A
1 TAATTCTACCCTACAAGG-GTATTTCGA
*
8207516 GTAATTCTACCCTACAAGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
8207544 TAATTCTACCTTA-TAGGAGTATTTC-A
1 TAATTCTACCCTACAAGG-GTATTTCGA
8207570 GTAATTCTACCCTACAAGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
8207597 GTAATTCTACCATACAAGGGTATTT-TA
1 -TAATTCTACCCTACAAGGGTATTTCGA
8207624 GTAATTCTACCCTACAAGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
8207651 GTAATTCTACCTTATAGGGGTATTTCTG-
1 -TAATTCTACCCTACAAGGGTATTTC-GA
* ** *
8207679 TATTTCTACCCTACAAATGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
8207706 TAATTCTACCTTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
8207733 T-ATTTTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
8207759 TAATTCTACCCTACAAGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
8207786 TATTTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
8207813 TAATTCTACCCTA-TAGGGTATTTC
1 TAATTCTACCCTACAAGGGTATTTC
8207837 AGTAATTAGT
Statistics
Matches: 358, Mismatches: 55, Indels: 31
0.81 0.12 0.07
Matches are distributed among these distances:
26 38 0.11
27 314 0.88
28 6 0.02
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:8207439 original size:54 final size:55
Alignment explanation
Indices: 8207355--8207877 Score: 564
Period size: 54 Copynumber: 9.6 Consensus size: 55
8207345 GGGCAAAATG
* * * * *
8207355 GTAATTTTACCCCACGA-GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * *
8207409 -TATTTCTACCCTACAAAGGTATTTCGGTAATTCTACCCTACAGGGGTGTTTC-A
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * * * *
8207462 GTAATTCTACCCTACAAGGTTTTTTCGGTAATTCTACCTTATAGGAGTATTTC-A
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * *
8207516 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTATAGGAGTATTTC-A
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * * *
8207570 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCATACAAGGGTATTT-TA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * * *
8207624 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCTTATAGGGGTATTTC-T
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* ** * *
8207678 GTATTTCTACCCTACAAATGTATTTCGGTAATTCTACCTTACAAGGGTATTTCG-
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* ** * *
8207732 GT-ATTTTACCCTACAAGGGTATTTCAATAATTCTACCCTACAAGGGTATTTTG-
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
* * *
8207785 GTATTTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATA-GGGTATTTCAGTAATTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-G-----A
* *
8207845 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATT
8207878 TTGTAAATCG
Statistics
Matches: 407, Mismatches: 49, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
53 66 0.16
54 310 0.76
60 31 0.08
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (55 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGA
Found at i:8207470 original size:81 final size:81
Alignment explanation
Indices: 8207355--8207843 Score: 551
Period size: 81 Copynumber: 6.1 Consensus size: 81
8207345 GGGCAAAATG
* * * * * *
8207355 GTAATTTTACCCCACGA-GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
* *
8207419 CTACAAAGGTATTTCG
66 CTACAAGGGTATTTCA
* * * * *
8207435 GTAATTCTACCCTACAGGGGTGTTTCAGTAATTCTACCCTACAAGGTTTTTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
* *
8207500 TTA-TAGGAGTATTTCA
66 CTACAAGG-GTATTTCA
* * *
8207516 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTA-TAGGAGTATTTC-AGTAATTCTA
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGG-GTATTTCGA-TAATTCTA
8207579 CCCTACAAGGGTATTTCA
64 CCCTACAAGGGTATTTCA
* *
8207597 GTAATTCTACCATACAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTC-AGTAATTCTAC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGA-TAATTCTAC
* * * *
8207661 CTTATAGGGGTATTTCT
65 CCTACAAGGGTATTTCA
* ** * * * *
8207678 GTATTTCTACCCTACAAATGTATTTCGGTAATTCTACCTTACAAGGGTATTTCGGT-ATTTTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
8207742 CTACAAGGGTATTTCA
66 CTACAAGGGTATTTCA
* ** * * *
8207758 ATAATTCTACCCTACAAGGGTATTTTGGTATTTCTACCCTACAGGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
*
8207823 CTA-TAGGGTATTTCA
66 CTACAAGGGTATTTCA
8207838 GTAATT
1 GTAATT
8207844 AGTAATTCTA
Statistics
Matches: 343, Mismatches: 58, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
80 101 0.29
81 236 0.69
82 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (81 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGATAATTCTACC
CTACAAGGGTATTTCA
Found at i:8207854 original size:33 final size:34
Alignment explanation
Indices: 8207812--8207877 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
8207802 GGGTATTTCG
*
8207812 GTAATTCTACCCTATA-GGGTATTTCAGTAATTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTA
8207845 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
8207878 TTGTAAATCG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 15 0.48
34 16 0.52
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (34 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTA
Found at i:8207892 original size:27 final size:27
Alignment explanation
Indices: 8207862--8207965 Score: 84
Period size: 27 Copynumber: 3.9 Consensus size: 27
8207852 TACCCTACAG
8207862 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTGTAAATCGA
*** * * *
8207889 GGGTAAAACAGTAATTCTGTAAGTCGG
1 GGGTATTTCAGTAATTTTGTAAATCGA
* ** *
8207916 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTGTAAATCGA
* *
8207943 GGGTATTTCAATAATTTGGTAAA
1 GGGTATTTCAGTAATTTTGTAAA
8207966 CTAAAGTATT
Statistics
Matches: 55, Mismatches: 20, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
26 3 0.05
27 52 0.95
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTGTAAATCGA
Found at i:8209078 original size:27 final size:26
Alignment explanation
Indices: 8209055--8209260 Score: 198
Period size: 27 Copynumber: 7.7 Consensus size: 26
8209045 TTAGTTTACC
*
8209055 AAATTATCAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
* * *
8209082 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCC-TGGTTTGTA
*
8209109 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
8209136 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTA
* *
8209163 AAATTATCAAAATACCACTGG-TTGTG
1 AAATTACCAAAATACC-CTGGTTTGTA
* ***
8209189 AAATTACCGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCT-GGTTTGTA
** **
8209216 AAATTACCAAAATACCCTTAATTTACA
1 AAATTACCAAAATACCC-TGGTTTGTA
*
8209243 AAATTACAAAAATACCCT
1 AAATTACCAAAATACCCT
8209261 TGACTTTCTA
Statistics
Matches: 153, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.01
26 24 0.16
27 123 0.80
28 4 0.03
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCTGGTTTGTA
Found at i:8209246 original size:80 final size:80
Alignment explanation
Indices: 8209109--8209258 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
8209099 TTTGTTTATA
** ** **
8209109 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATC-AA
1 AAATTACCAAAATACCCCTAAATTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA-CAAA
8209173 AATACCACTGGTTGTG
65 AATACCACTGGTTGTG
* *
8209189 AAATTACCGAAATA-CCCTCAAATTGTAAAATTACCAAAATACCCTTAATTTACAAAATTACAAA
1 AAATTACCAAAATACCCCT-AAATTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAAA
8209253 AATACC
65 AATACC
8209259 CTTGACTTTC
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 5 0.08
80 55 0.92
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTAAATTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAAAA
ATACCACTGGTTGTG
Done.