Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 230 of 313
Found at i:70847576 original size:14 final size:14
Alignment explanation
Indices: 70847557--70847587 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
70847547 GAATATCCAG
70847557 TAAGCTATGAACCT
1 TAAGCTATGAACCT
70847571 TAAGCTATGAACCT
1 TAAGCTATGAACCT
70847585 TAA
1 TAA
70847588 TGTTTGTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (14 bp):
TAAGCTATGAACCT
Found at i:70849112 original size:107 final size:107
Alignment explanation
Indices: 70848936--70849149 Score: 419
Period size: 107 Copynumber: 2.0 Consensus size: 107
70848926 AAAGTTTATT
*
70848936 CAAGTTGCTCCAATAACGAATGTGATGTCTCATACCTGGACCCAACAACCGGGTTGGTGTGGGGT
1 CAAGTTGCTCCAACAACGAATGTGATGTCTCATACCTGGACCCAACAACCGGGTTGGTGTGGGGT
70849001 GTCACATTGGATTAAAAAGAGGTCTGGAAATCAAAGTGTAAG
66 GTCACATTGGATTAAAAAGAGGTCTGGAAATCAAAGTGTAAG
70849043 CAAGTTGCTCCAACAACGAATGTGATGTCTCATACCTGGACCCAACAACCGGGTTGGTGTGGGGT
1 CAAGTTGCTCCAACAACGAATGTGATGTCTCATACCTGGACCCAACAACCGGGTTGGTGTGGGGT
70849108 GTCACATTGGATTAAAAAGAGGTCTGGAAATCAAAGTGTAAG
66 GTCACATTGGATTAAAAAGAGGTCTGGAAATCAAAGTGTAAG
70849150 AAGGGCAATA
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
107 106 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (107 bp):
CAAGTTGCTCCAACAACGAATGTGATGTCTCATACCTGGACCCAACAACCGGGTTGGTGTGGGGT
GTCACATTGGATTAAAAAGAGGTCTGGAAATCAAAGTGTAAG
Found at i:70850769 original size:15 final size:14
Alignment explanation
Indices: 70850726--70850769 Score: 56
Period size: 12 Copynumber: 3.2 Consensus size: 14
70850716 TTAATATATA
70850726 AATAAATAAATTAT
1 AATAAATAAATTAT
*
70850740 --TAAATAAAATAT
1 AATAAATAAATTAT
70850752 AATAAATATAATTAT
1 AATAAATA-AATTAT
70850767 AAT
1 AAT
70850770 GTATGGCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 11 0.44
14 6 0.24
15 8 0.32
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATAAATAAATTAT
Found at i:70853599 original size:14 final size:15
Alignment explanation
Indices: 70853574--70853603 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
70853564 AAACTTTGGT
70853574 ATTTTAAAAAAATTA
1 ATTTTAAAAAAATTA
70853589 ATTTT-AAAAAATTA
1 ATTTTAAAAAAATTA
70853603 A
1 A
70853604 ATCAATGACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTTAAAAAAATTA
Found at i:70854006 original size:79 final size:79
Alignment explanation
Indices: 70853910--70854070 Score: 304
Period size: 79 Copynumber: 2.0 Consensus size: 79
70853900 TAACTATTTA
*
70853910 ATACACCACTAGTAGAATTTTTTAGACTCCAAAAGTGGGTTGAGGCCATAACAAGTGTCACATTT
1 ATACACCACTAGTAGAATTTTTTAGACTCCAAAAGCGGGTTGAGGCCATAACAAGTGTCACATTT
70853975 GTTTATATATATAT
66 GTTTATATATATAT
*
70853989 ATACACCACTAGTAGAATTTTTTAGACTCCAAAAGCGGGTTGATGCCATAACAAGTGTCACATTT
1 ATACACCACTAGTAGAATTTTTTAGACTCCAAAAGCGGGTTGAGGCCATAACAAGTGTCACATTT
70854054 GTTTATATATATAT
66 GTTTATATATATAT
70854068 ATA
1 ATA
70854071 TATATATATA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
Consensus pattern (79 bp):
ATACACCACTAGTAGAATTTTTTAGACTCCAAAAGCGGGTTGAGGCCATAACAAGTGTCACATTT
GTTTATATATATAT
Found at i:70854064 original size:2 final size:2
Alignment explanation
Indices: 70854057--70854089 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
70854047 CACATTTGTT
70854057 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70854090 TACTACACCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:70856578 original size:19 final size:20
Alignment explanation
Indices: 70856554--70856599 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
70856544 TGTACATGAA
*
70856554 AATAATG-AATAATATTAAT
1 AATAATGCAATAATAGTAAT
70856573 AATAATATGCAATAATAGTAAT
1 AAT-A-ATGCAATAATAGTAAT
70856595 AATAA
1 AATAA
70856600 ACAAGTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 3 0.13
20 2 0.09
21 4 0.17
22 14 0.61
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (20 bp):
AATAATGCAATAATAGTAAT
Found at i:70861670 original size:3 final size:3
Alignment explanation
Indices: 70861664--70861704 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
70861654 TTAGAGAACC
70861664 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
70861705 GGTTTAAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:70875313 original size:14 final size:14
Alignment explanation
Indices: 70875294--70875328 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
70875284 ATTTAAATAT
70875294 TAAATATTTTTTTA
1 TAAATATTTTTTTA
70875308 TAAATATTTTTTTA
1 TAAATATTTTTTTA
*
70875322 TTAATAT
1 TAAATAT
70875329 CGTAAGTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TAAATATTTTTTTA
Found at i:70881740 original size:18 final size:17
Alignment explanation
Indices: 70881710--70881743 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70881700 TGGGTCGCAA
*
70881710 TTTTTTTCGTTTCAAAT
1 TTTTTTTCATTTCAAAT
70881727 TTTTTTTCTATTTCAAA
1 TTTTTTTC-ATTTCAAA
70881744 CTTTATAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.12, G:0.03, T:0.65
Consensus pattern (17 bp):
TTTTTTTCATTTCAAAT
Found at i:70882321 original size:17 final size:17
Alignment explanation
Indices: 70882299--70882357 Score: 118
Period size: 17 Copynumber: 3.5 Consensus size: 17
70882289 CACACGAGCT
70882299 AGCCACACGTCCGTGTG
1 AGCCACACGTCCGTGTG
70882316 AGCCACACGTCCGTGTG
1 AGCCACACGTCCGTGTG
70882333 AGCCACACGTCCGTGTG
1 AGCCACACGTCCGTGTG
70882350 AGCCACAC
1 AGCCACAC
70882358 AGGCTGGCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.20, C:0.37, G:0.27, T:0.15
Consensus pattern (17 bp):
AGCCACACGTCCGTGTG
Found at i:70883216 original size:14 final size:14
Alignment explanation
Indices: 70883197--70883226 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70883187 GTTGTGTTCA
70883197 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
*
70883211 TAGTTAATTTAGAT
1 TAGTTAAATTAGAT
70883225 TA
1 TA
70883227 AAAACAACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:70883500 original size:14 final size:14
Alignment explanation
Indices: 70883481--70883507 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
70883471 ATTTTTAGTT
70883481 TAATTTTTGTTTTC
1 TAATTTTTGTTTTC
70883495 TAATTTTTGTTTT
1 TAATTTTTGTTTT
70883508 ATTTACTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74
Consensus pattern (14 bp):
TAATTTTTGTTTTC
Found at i:70886747 original size:21 final size:20
Alignment explanation
Indices: 70886696--70886749 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 20
70886686 ACCCATTTTC
70886696 CTATTTTTTA-TTATTTATT
1 CTATTTTTTATTTATTTATT
*
70886715 TTATCTTCTTTATTTATTTATT
1 CTAT-TT-TTTATTTATTTATT
70886737 CTATTATTTTATT
1 CTATT-TTTTATT
70886750 CCTTTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 3 0.10
20 2 0.07
21 11 0.38
22 13 0.45
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (20 bp):
CTATTTTTTATTTATTTATT
Found at i:70886763 original size:29 final size:29
Alignment explanation
Indices: 70886699--70886765 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
70886689 CATTTTCCTA
*
70886699 TTTTTTATTATTTATTTTATCTTCTTTAT
1 TTTTTTATTATTTATTTTATCTCCTTTAT
* *
70886728 TTATTTATTCTATTATTTTAT-TCCTTTAT
1 TTTTTTATTAT-TTATTTTATCTCCTTTAT
70886757 TTTTTTATT
1 TTTTTTATT
70886766 TTAGTTGTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 24 0.73
30 9 0.27
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.75
Consensus pattern (29 bp):
TTTTTTATTATTTATTTTATCTCCTTTAT
Found at i:70888481 original size:6 final size:6
Alignment explanation
Indices: 70888470--70888502 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
70888460 AGTCTATTTG
*
70888470 TTTTAT TTTTAT TTTTAT GTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
70888503 GTTAGACTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:70889486 original size:13 final size:13
Alignment explanation
Indices: 70889468--70889492 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70889458 TTGTTCTCAA
70889468 AAAAAGAAAAAAG
1 AAAAAGAAAAAAG
70889481 AAAAAGAAAAAA
1 AAAAAGAAAAAA
70889493 AAGAGTATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAG
Found at i:70898792 original size:22 final size:21
Alignment explanation
Indices: 70898767--70898922 Score: 98
Period size: 22 Copynumber: 7.1 Consensus size: 21
70898757 GGGATATTGC
70898767 ATACCAGAGGTCTGGTATCGCG
1 ATACCAG-GGTCTGGTATCGCG
*
70898789 ATACCAGAGGTCCGGTATCGCG
1 ATACCAG-GGTCTGGTATCGCG
* * * *
70898811 ATGCTAGGGGCTTGGTATCACG
1 ATACCAGGGTC-TGGTATCGCG
* *
70898833 ATGCCAGGGTCTGGTATCGCC
1 ATACCAGGGTCTGGTATCGCG
* * * *
70898854 ATACTAGGGGTTTGGTATCACC
1 ATACCA-GGGTCTGGTATCGCG
* *
70898876 ATACTAGGTGT-TCGCTATCGCG
1 ATACCAGG-GTCT-GGTATCGCG
* **
70898898 ATACCAAAGGTCCCGTATCGCG
1 ATACC-AGGGTCTGGTATCGCG
70898920 ATA
1 ATA
70898923 TCCATAAGAG
Statistics
Matches: 106, Mismatches: 22, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
21 18 0.17
22 86 0.81
23 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (21 bp):
ATACCAGGGTCTGGTATCGCG
Found at i:70898851 original size:43 final size:44
Alignment explanation
Indices: 70898779--70898879 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 44
70898769 ACCAGAGGTC
* * *
70898779 TGGTATCGCGATACCAGAGGTCCGGTATCGCGATGCTAGGGGCT
1 TGGTATCACGATACCAGAGGTCCGGTATCGCCATACTAGGGGCT
* * *
70898823 TGGTATCACGATGCCAG-GGTCTGGTATCGCCATACTAGGGGTT
1 TGGTATCACGATACCAGAGGTCCGGTATCGCCATACTAGGGGCT
*
70898866 TGGTATCACCATAC
1 TGGTATCACGATAC
70898880 TAGGTGTTCG
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 34 0.69
44 15 0.31
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.26
Consensus pattern (44 bp):
TGGTATCACGATACCAGAGGTCCGGTATCGCCATACTAGGGGCT
Found at i:70899114 original size:22 final size:22
Alignment explanation
Indices: 70899084--70899161 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
70899074 CATGCAATGA
*
70899084 GTCTAGTATCGCGATGCTAGGG
1 GTCTGGTATCGCGATGCTAGGG
*
70899106 GT-TCGGTATTGCGATGCTAGGG
1 GTCT-GGTATCGCGATGCTAGGG
* * * *
70899128 GTCTGGTATCTCCATACTAAGG
1 GTCTGGTATCGCGATGCTAGGG
70899150 GTCTGGTATCGC
1 GTCTGGTATCGC
70899162 CATACCAAGG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.02
22 44 0.96
23 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.33, T:0.31
Consensus pattern (22 bp):
GTCTGGTATCGCGATGCTAGGG
Found at i:70899164 original size:22 final size:22
Alignment explanation
Indices: 70899126--70899173 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
70899116 GCGATGCTAG
* *
70899126 GGGTCTGGTATCTCCATACTAA
1 GGGTCTGGTATCGCCATACCAA
70899148 GGGTCTGGTATCGCCATACCAA
1 GGGTCTGGTATCGCCATACCAA
70899170 GGGT
1 GGGT
70899174 GCGATATCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (22 bp):
GGGTCTGGTATCGCCATACCAA
Found at i:70899181 original size:22 final size:21
Alignment explanation
Indices: 70899134--70899200 Score: 53
Period size: 22 Copynumber: 3.0 Consensus size: 21
70899124 AGGGGTCTGG
* * *
70899134 TATCTCCATACTAAGGGTCTGG
1 TATCGCCATACCAAGGGTC-GA
70899156 TATCGCCATACCAAGGGTGCGA
1 TATCGCCATACCAAGGGT-CGA
** *
70899178 TATCGTGATACCAATGGTTCGA
1 TATCGCCATACCAA-GGGTCGA
70899200 T
1 T
70899201 TTTGCGATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
22 33 0.89
23 4 0.11
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.28
Consensus pattern (21 bp):
TATCGCCATACCAAGGGTCGA
Found at i:70899214 original size:287 final size:287
Alignment explanation
Indices: 70898803--70899372 Score: 799
Period size: 287 Copynumber: 2.0 Consensus size: 287
70898793 CAGAGGTCCG
* *
70898803 GTATCGCGATGCTAGGGGCTTGGTATCACGATGCCAGGGTCTGGTATCGCCATACTAGGGGTTTG
1 GTATCGCGATGCTAGGGGCTTGGTATCACGATGCCAGGGTCTGGTATCGCCATACTAAGGGTCTG
* * * *
70898868 GTATCACCATACTAGGTGTTCGCTATCGCGATACCAAAGGTCCCGTATCGCGATATCCATAAGAG
66 GTATCACCATACAAGGTGTGCGATATCGCGATACCAAAGGTCCCGTATCGCGATATCCATAAAAG
* *
70898933 TTTTGGCCTCCCCTCGAAACTATCCAGGATATTGCGATATCCA-CCATTAGGTGTCGTGATACCA
131 TTTTGGCCTCCCCTCGAAACTATCAAGGATATTGCGATATCCAGCC-TTAGGTGTCGTGATACAA
* * * * *
70898997 CTGTATAGTTGTCAAACTTT-CAAAATTTTTATCTTCCTCTAAACACAAAATAGGACCCCTAAAT
195 CTGTATAGTTCTCAAAATTTACAAAATTTTCATCTTCCTCTAAACACAAAACAAGACCCCTAAAT
70899061 CCCTAAAATTCAACATGCAATGAGTCTA
260 CCCTAAAATTCAACATGCAATGAGTCTA
** * *
70899089 GTATCGCGATGCTAGGGG-TTCGGTATTGCGATGCTAGGGGTCTGGTATCTCCATACTAAGGGTC
1 GTATCGCGATGCTAGGGGCTT-GGTATCACGATGCCA-GGGTCTGGTATCGCCATACTAAGGGTC
* * * * * *
70899153 TGGTATCGCCATACCAAGG-GTGCGATATCGTGATACCAATGGT-TCGATTTTGCGATATCCATA
64 TGGTATCACCATA-CAAGGTGTGCGATATCGCGATACCAAAGGTCCCG-TATCGCGATATCCATA
* * ** *
70899216 AAATTTTTGGCCTTCTTTCGAAACTATCAAGGGTATTGCGATATCCAGCCTTAGGTGTCGTGATA
127 AAAGTTTTGGCCTCCCCTCGAAACTATCAAGGATATTGCGATATCCAGCCTTAGGTGTCGTGATA
70899281 CAACTGTATAGTTCTCAAAATTTCACAAAATTTTCATCTTCCTCTAAACACAAAACAAGACCCCT
192 CAACTGTATAGTTCTCAAAATTT-ACAAAATTTTCATCTTCCTCTAAACACAAAACAAGACCCCT
70899346 AAATCCCTAAAATTCAACATGCAATGA
256 AAATCCCTAAAATTCAACATGCAATGA
70899373 ATTTAAAACC
Statistics
Matches: 249, Mismatches: 28, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
285 2 0.01
286 32 0.13
287 145 0.58
288 6 0.02
289 64 0.26
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (287 bp):
GTATCGCGATGCTAGGGGCTTGGTATCACGATGCCAGGGTCTGGTATCGCCATACTAAGGGTCTG
GTATCACCATACAAGGTGTGCGATATCGCGATACCAAAGGTCCCGTATCGCGATATCCATAAAAG
TTTTGGCCTCCCCTCGAAACTATCAAGGATATTGCGATATCCAGCCTTAGGTGTCGTGATACAAC
TGTATAGTTCTCAAAATTTACAAAATTTTCATCTTCCTCTAAACACAAAACAAGACCCCTAAATC
CCTAAAATTCAACATGCAATGAGTCTA
Found at i:70901080 original size:7 final size:7
Alignment explanation
Indices: 70901068--70901102 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
70901058 TCTTCATCAA
70901068 CACATAT
1 CACATAT
70901075 CACATAT
1 CACATAT
70901082 CACATAT
1 CACATAT
*
70901089 CACGTAT
1 CACATAT
70901096 CACATAT
1 CACATAT
70901103 TGATAGTGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.40, C:0.29, G:0.03, T:0.29
Consensus pattern (7 bp):
CACATAT
Found at i:70904788 original size:34 final size:34
Alignment explanation
Indices: 70904750--70904820 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
70904740 TCCACAATAG
70904750 AGTATGTGTTAGCTTTGCATGTTAGCCACATGTT
1 AGTATGTGTTAGCTTTGCATGTTAGCCACATGTT
*
70904784 AGTATGTGTTAGCTTTGCATGTTAGCCACGTGTT
1 AGTATGTGTTAGCTTTGCATGTTAGCCACATGTT
70904818 AGT
1 AGT
70904821 TCTACGAGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.20, C:0.14, G:0.25, T:0.41
Consensus pattern (34 bp):
AGTATGTGTTAGCTTTGCATGTTAGCCACATGTT
Found at i:70905340 original size:49 final size:48
Alignment explanation
Indices: 70905233--70905353 Score: 129
Period size: 49 Copynumber: 2.5 Consensus size: 48
70905223 GTTACAGTAA
*
70905233 GCCACTGGTAGGGCATGTTAGTTGCAAACTAGATTGGTAGATGTTTTAG
1 GCCACTGGTAGGGCATGTTAGTTGCAAACTAGATTGGTAGATG-TATAG
* * * * *
70905282 ACCATTGGTAGGGCATGTTCGTTGCTAACTAGATTGACGT-GTATG-ATGG
1 GCCACTGGTAGGGCATGTTAGTTGCAAACTAGATTG--GTAG-ATGTATAG
*
70905331 GCCACTGGTAGGACATGTTAGTT
1 GCCACTGGTAGGGCATGTTAGTT
70905354 ATTAACTAGG
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
49 53 0.90
50 1 0.02
51 5 0.08
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (48 bp):
GCCACTGGTAGGGCATGTTAGTTGCAAACTAGATTGGTAGATGTATAG
Found at i:70907669 original size:57 final size:57
Alignment explanation
Indices: 70907557--70907667 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 57
70907547 TCATTTTTAA
* *
70907557 TTTCATTTTGGAGAAAACCACATTCATTTCCAAATAATTCTATTTCCCTATTTTCAT
1 TTTCATTTGGGAGAAAACCACATTCATTTCCAAATAATTCCATTTCCCTATTTTCAT
* * ** *
70907614 TTTCATTTGGGAGAAAACCTCATTCATTTCCTAATGTTTCCCATTTCTCTATTT
1 TTTCATTTGGGAGAAAACCACATTCATTTCCAAATAATT-CCATTTCCCTATTT
70907668 CACCATTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 34 0.74
58 12 0.26
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.45
Consensus pattern (57 bp):
TTTCATTTGGGAGAAAACCACATTCATTTCCAAATAATTCCATTTCCCTATTTTCAT
Found at i:70919264 original size:15 final size:14
Alignment explanation
Indices: 70919243--70919278 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
70919233 ATAATCCTTA
*
70919243 ATAATTATCTTAAT
1 ATAATTATCCTAAT
70919257 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
70919272 ATAATTA
1 ATAATTA
70919279 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:70920981 original size:5 final size:5
Alignment explanation
Indices: 70920971--70921048 Score: 56
Period size: 5 Copynumber: 15.4 Consensus size: 5
70920961 AGTAATAAAT
* * *
70920971 AATAA AATAA AATAA AGTAATA AATAA AGT-A AAGAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AAT-A-A AATAA AATAA AATAA AATAA AATAA AATAA
70921022 TAA-ATA AAT-A AAT-A AATAAA AATAA AA
1 -AATA-A AATAA AATAA AAT-AA AATAA AA
70921049 ATTGGGTTGC
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
4 10 0.17
5 37 0.63
6 9 0.15
7 3 0.05
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:70920998 original size:4 final size:4
Alignment explanation
Indices: 70920964--70921041 Score: 63
Period size: 4 Copynumber: 18.5 Consensus size: 4
70920954 CCAAATAAGT
*
70920964 AATA AAT- AATAA AATAA AATA AAGT- AATA AATA AAGTA AAGAA AATAA
1 AATA AATA AAT-A AAT-A AATA AA-TA AATA AATA AA-TA AA-TA AAT-A
70921012 AATA AA-A TAATA AATA AATA AATA AATA AA
1 AATA AATA -AATA AATA AATA AATA AATA AA
70921042 AATAAAAATT
Statistics
Matches: 64, Mismatches: 2, Indels: 16
0.78 0.02 0.20
Matches are distributed among these distances:
3 5 0.08
4 37 0.58
5 22 0.34
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:70921050 original size:31 final size:30
Alignment explanation
Indices: 70920956--70921048 Score: 120
Period size: 31 Copynumber: 3.1 Consensus size: 30
70920946 ATTAGTATCC
70920956 AAATAAGT-AATAAAT-AATAAAATAAAATA
1 AAATAA-TAAATAAATAAATAAAATAAAATA
* *
70920985 AAGTAATAAATAAAGTAAAGAAAATAAAATA
1 AAATAATAAATAAA-TAAATAAAATAAAATA
70921016 AAATAATAAATAAATAAAT-AAATAAAAATA
1 AAATAATAAATAAATAAATAAAAT-AAAATA
70921046 AAA
1 AAA
70921049 ATTGGGTTGC
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.02
29 15 0.27
30 14 0.25
31 26 0.46
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (30 bp):
AAATAATAAATAAATAAATAAAATAAAATA
Found at i:70927530 original size:15 final size:14
Alignment explanation
Indices: 70927509--70927544 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
70927499 ATAATCTTTA
*
70927509 ATAATTATCTTAAT
1 ATAATTATCCTAAT
70927523 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
70927538 ATAATTA
1 ATAATTA
70927545 AAATAGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:70931590 original size:35 final size:35
Alignment explanation
Indices: 70931544--70931627 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 35
70931534 TACCGTGAAG
*
70931544 ATGGTATATAGGTCTTTTGAGGAAACACAATATAA
1 ATGGTATATAGGTCCTTTGAGGAAACACAATATAA
* ** ** *
70931579 ATGGTATATAGGTCCTTTGGGGCGACACCGTGTAA
1 ATGGTATATAGGTCCTTTGAGGAAACACAATATAA
70931614 ATGGTATATAGGTC
1 ATGGTATATAGGTC
70931628 ACTGGAATAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (35 bp):
ATGGTATATAGGTCCTTTGAGGAAACACAATATAA
Found at i:70936620 original size:7 final size:7
Alignment explanation
Indices: 70936605--70936634 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
70936595 TCAAGTAATT
*
70936605 CATTGAA
1 CATTTAA
70936612 CATTTAA
1 CATTTAA
70936619 CATTTAA
1 CATTTAA
70936626 CATTTAA
1 CATTTAA
70936633 CA
1 CA
70936635 ATTACTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.37
Consensus pattern (7 bp):
CATTTAA
Found at i:70953850 original size:10 final size:10
Alignment explanation
Indices: 70953835--70953859 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70953825 CTTACGCTTA
70953835 TGTGAAGAAC
1 TGTGAAGAAC
70953845 TGTGAAGAAC
1 TGTGAAGAAC
70953855 TGTGA
1 TGTGA
70953860 TAAGTGCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.08, G:0.32, T:0.24
Consensus pattern (10 bp):
TGTGAAGAAC
Found at i:70955283 original size:16 final size:16
Alignment explanation
Indices: 70955259--70955292 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
70955249 TTAATTATTT
70955259 TTTAGTTCTTTAGGAA
1 TTTAGTTCTTTAGGAA
* *
70955275 TTTATTTCTTTAGTAA
1 TTTAGTTCTTTAGGAA
70955291 TT
1 TT
70955293 AGGATTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.59
Consensus pattern (16 bp):
TTTAGTTCTTTAGGAA
Found at i:70968545 original size:12 final size:13
Alignment explanation
Indices: 70968509--70968555 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
70968499 TATTTTCAAA
*
70968509 ATATGTTTTCAAG
1 ATATGTTTTAAAG
* *
70968522 TTATGTTTTTAAG
1 ATATGTTTTAAAG
*
70968535 CTATGTTTTAAAG
1 ATATGTTTTAAAG
70968548 ATATGTTT
1 ATATGTTT
70968556 CACGCATGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.53
Consensus pattern (13 bp):
ATATGTTTTAAAG
Found at i:70970274 original size:39 final size:39
Alignment explanation
Indices: 70970214--70970336 Score: 147
Period size: 40 Copynumber: 3.1 Consensus size: 39
70970204 CTGTTATACT
* *
70970214 TTCTATTTGGTGTGATTCGGGTGGATCAGCTCTTATGAGC
1 TTCTA-TTGGCGTGTTTCGGGTGGATCAGCTCTTATGAGC
*
70970254 TTCTATTGGCGTGTTTCGGGTGGACCAGCTCTTATGAGC
1 TTCTATTGGCGTGTTTCGGGTGGATCAGCTCTTATGAGC
* * * ** *
70970293 TTTTGTTTGGCGTATTTCGATTGGATCAGCTCTTATGAGT
1 TTCT-ATTGGCGTGTTTCGGGTGGATCAGCTCTTATGAGC
70970333 TTCT
1 TTCT
70970337 GTTTGGTGTG
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 34 0.48
40 37 0.52
ACGTcount: A:0.14, C:0.16, G:0.28, T:0.42
Consensus pattern (39 bp):
TTCTATTGGCGTGTTTCGGGTGGATCAGCTCTTATGAGC
Found at i:70981005 original size:17 final size:17
Alignment explanation
Indices: 70980985--70981022 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
70980975 ACAAATCTCG
*
70980985 CCAAAACACATAATTCA
1 CCAAAACACAGAATTCA
*
70981002 CCAAAACACAGGATTCA
1 CCAAAACACAGAATTCA
70981019 CCAA
1 CCAA
70981023 TTAGTTCGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.32, G:0.05, T:0.13
Consensus pattern (17 bp):
CCAAAACACAGAATTCA
Found at i:70984530 original size:140 final size:140
Alignment explanation
Indices: 70984278--70984558 Score: 553
Period size: 140 Copynumber: 2.0 Consensus size: 140
70984268 TGCATTTCTT
70984278 TAATCATAGTTTGGACTCATATAATTGTTTATATCTTTCCTCGAAGTTTCTCGTGTTCAATCAGC
1 TAATCATAGTTTGGACTCATATAATTGTTTATATCTTTCCTCGAAGTTTCTCGTGTTCAATCAGC
70984343 ATGACCCTGTTGAGAATTAATAAATGCGTATTAGGTGCTGACATGTAGTGCAGATGGTACACTAC
66 ATGACCCTGTTGAGAATTAATAAATGCGTATTAGGTGCTGACATGTAGTGCAGATGGTACACTAC
70984408 TTGCCAGTGC
131 TTGCCAGTGC
70984418 TAATCATAGTTTGGACTCATATAATTGTTTATATCTTTCCTCGAAGTTTCTCGTGTTCAATCAGC
1 TAATCATAGTTTGGACTCATATAATTGTTTATATCTTTCCTCGAAGTTTCTCGTGTTCAATCAGC
*
70984483 ATGACCCTGTTGAGAATTAATAAATGCGTATTAGGTGCTGACATGTAGTTCAGATGGTACACTAC
66 ATGACCCTGTTGAGAATTAATAAATGCGTATTAGGTGCTGACATGTAGTGCAGATGGTACACTAC
70984548 TTGCCAGTGC
131 TTGCCAGTGC
70984558 T
1 T
70984559 GTCAAGGTGT
Statistics
Matches: 140, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 140 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (140 bp):
TAATCATAGTTTGGACTCATATAATTGTTTATATCTTTCCTCGAAGTTTCTCGTGTTCAATCAGC
ATGACCCTGTTGAGAATTAATAAATGCGTATTAGGTGCTGACATGTAGTGCAGATGGTACACTAC
TTGCCAGTGC
Found at i:70988152 original size:3 final size:3
Alignment explanation
Indices: 70988144--70988168 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
70988134 CCTTTTCCTT
70988144 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
70988169 CTCTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:70989703 original size:15 final size:15
Alignment explanation
Indices: 70989683--70989723 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
70989673 TATACAATAA
70989683 ACAACAAGATTATCC
1 ACAACAAGATTATCC
* *
70989698 ACAACACGATTATCT
1 ACAACAAGATTATCC
70989713 ACAACAAGATT
1 ACAACAAGATT
70989724 TGAACAAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.46, C:0.24, G:0.07, T:0.22
Consensus pattern (15 bp):
ACAACAAGATTATCC
Found at i:70990599 original size:214 final size:212
Alignment explanation
Indices: 70990232--70990652 Score: 745
Period size: 214 Copynumber: 2.0 Consensus size: 212
70990222 ATGCCAAAGG
*
70990232 ACCCAATAAAATTTGGGTATCAAAATCCGAAGTTAGACACCACAAAGTTGGATGTTGCACTAGAG
1 ACCCAATAAAATTTGGGTATCAAAATCCAAAGTTAGACACCACAAAGTTGGATGTTGCACTAGAG
* *
70990297 AGTGTCAATTTGAGACGGGAGATGCTTGAGATGTTGGATTTCATCAAAAGAAAAAATCTTAGTAG
66 AGGGTCAATTTGAGACAGGAGATGCTTGAGATGTTGGATTTCATCAAAAGAAAAAATCTTAGTAG
70990362 AAGTTGTCTCCTTAGATGACTATAATTTTTGTCAAATTTGCTTGAGCCCTTGTAGACTTGACTCT
131 AAGTTGTCTCCTTAGATGACTATAATTTTTGTCAAATTTGCTTGAGCCCTTGTAGACTTGACTCT
70990427 TTTCCCTCCATGCCCAA
196 TTTCCCTCCATGCCCAA
**
70990444 ACCCAATAAAATTTGGGTATCAAAATCCAAAGTTAGACTTCACAAAGTTGGATGTTGCACTAGAG
1 ACCCAATAAAATTTGGGTATCAAAATCCAAAGTTAGACACCACAAAGTTGGATGTTGCACTAGAG
*
70990509 AAAGGGTCAATTTGAGACAGGAGATGGTTGAGATGTTGGATTTCATCAAAAGAAAAAATCTTAGT
66 --AGGGTCAATTTGAGACAGGAGATGCTTGAGATGTTGGATTTCATCAAAAGAAAAAATCTTAGT
*
70990574 AGAAGTTGTCTCCTTATG-TGACTATAATTTTTGTCAAATTTGCTTGAGCCCTTGTTGACTTGAC
129 AGAAGTTGTCTCCTTA-GATGACTATAATTTTTGTCAAATTTGCTTGAGCCCTTGTAGACTTGAC
70990638 TCTTTTCCCTCCATG
193 TCTTTTCCCTCCATG
70990653 TCCTCTAGTG
Statistics
Matches: 199, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
212 62 0.31
214 136 0.68
215 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (212 bp):
ACCCAATAAAATTTGGGTATCAAAATCCAAAGTTAGACACCACAAAGTTGGATGTTGCACTAGAG
AGGGTCAATTTGAGACAGGAGATGCTTGAGATGTTGGATTTCATCAAAAGAAAAAATCTTAGTAG
AAGTTGTCTCCTTAGATGACTATAATTTTTGTCAAATTTGCTTGAGCCCTTGTAGACTTGACTCT
TTTCCCTCCATGCCCAA
Found at i:70993687 original size:19 final size:19
Alignment explanation
Indices: 70993663--70993701 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
70993653 GACTAATTGG
70993663 TATAGCAGATTATTTGGGA
1 TATAGCAGATTATTTGGGA
*
70993682 TATAGCAGATTTTTTGGGA
1 TATAGCAGATTATTTGGGA
70993701 T
1 T
70993702 GTAATTAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.26, T:0.41
Consensus pattern (19 bp):
TATAGCAGATTATTTGGGA
Found at i:71000649 original size:18 final size:18
Alignment explanation
Indices: 71000609--71000650 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
71000599 CAAAAAATTT
**
71000609 AAAAAATAAAGAAAAGTA
1 AAAAAATAAAGAAAAAAA
71000627 AAAAAATAAA-AAAAAAA
1 AAAAAATAAAGAAAAAAA
71000644 AGAAAAA
1 A-AAAAA
71000651 CATTTTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (18 bp):
AAAAAATAAAGAAAAAAA
Found at i:71012418 original size:12 final size:12
Alignment explanation
Indices: 71012401--71012425 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71012391 TGCAAATGAA
71012401 TCATTTCCATTT
1 TCATTTCCATTT
71012413 TCATTTCCATTT
1 TCATTTCCATTT
71012425 T
1 T
71012426 GGAAGCATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.60
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:71017770 original size:27 final size:28
Alignment explanation
Indices: 71017717--71017771 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
71017707 CCCAAAATCT
*
71017717 AACCCAATTAACCTAGCCCAATATAAAC
1 AACCCAATTAACCTAGCCCAACATAAAC
* * *
71017745 AACCC-ATTAATCTAGCCCGACCTAAAC
1 AACCCAATTAACCTAGCCCAACATAAAC
71017772 TCGATTCTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.42, C:0.35, G:0.05, T:0.18
Consensus pattern (28 bp):
AACCCAATTAACCTAGCCCAACATAAAC
Found at i:71022650 original size:21 final size:19
Alignment explanation
Indices: 71022604--71022652 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
71022594 TGAAGTTTAT
*
71022604 AAAAATATTCAAAAAAATTA
1 AAAAAT-TTCAAAAAAAATA
71022624 AGAAAATTTCAAAATAAAAATA
1 A-AAAATTTC-AAA-AAAAATA
71022646 AAAAATT
1 AAAAATT
71022653 CATAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 4 0.16
21 14 0.56
22 7 0.28
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (19 bp):
AAAAATTTCAAAAAAAATA
Found at i:71027855 original size:29 final size:29
Alignment explanation
Indices: 71027818--71027874 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
71027808 AGTTTGATAG
*
71027818 GCTCACACTTTGGTTACTCTCTTCAACAA
1 GCTCACACTTTGCTTACTCTCTTCAACAA
* *
71027847 GCTCGCACTTTGCTTACTGTCTTCAACA
1 GCTCACACTTTGCTTACTCTCTTCAACA
71027875 GGCTTGCAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (29 bp):
GCTCACACTTTGCTTACTCTCTTCAACAA
Found at i:71031237 original size:17 final size:17
Alignment explanation
Indices: 71031215--71031254 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
71031205 ATAAATATTT
71031215 AAAATTAACATTAAA-TA
1 AAAATTAA-ATTAAATTA
71031232 AAAATTAAATTAAATTA
1 AAAATTAAATTAAATTA
71031249 AAAATT
1 AAAATT
71031255 TTATCTCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 6 0.27
17 16 0.73
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATTAAATTAAATTA
Found at i:71039614 original size:240 final size:240
Alignment explanation
Indices: 71039191--71039670 Score: 960
Period size: 240 Copynumber: 2.0 Consensus size: 240
71039181 GCAATTTGAA
71039191 GCATTGAGGTGAACTAAAATTTAGCCTAAGAAGGTCCAAAATTATATGTATTAATTCATAATATA
1 GCATTGAGGTGAACTAAAATTTAGCCTAAGAAGGTCCAAAATTATATGTATTAATTCATAATATA
71039256 ATTAATTTTAATTTATATCCAATTTAATTTGGGTTAATAAATTATTATTAATTAATTATGAAAAA
66 ATTAATTTTAATTTATATCCAATTTAATTTGGGTTAATAAATTATTATTAATTAATTATGAAAAA
71039321 GTGGTCCAGTTGAATTGAACTGTGTGAACTGAACCGACCAAGAAATGGACAGCCCAAAAAACCAT
131 GTGGTCCAGTTGAATTGAACTGTGTGAACTGAACCGACCAAGAAATGGACAGCCCAAAAAACCAT
71039386 CCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAAGCT
196 CCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAAGCT
71039431 GCATTGAGGTGAACTAAAATTTAGCCTAAGAAGGTCCAAAATTATATGTATTAATTCATAATATA
1 GCATTGAGGTGAACTAAAATTTAGCCTAAGAAGGTCCAAAATTATATGTATTAATTCATAATATA
71039496 ATTAATTTTAATTTATATCCAATTTAATTTGGGTTAATAAATTATTATTAATTAATTATGAAAAA
66 ATTAATTTTAATTTATATCCAATTTAATTTGGGTTAATAAATTATTATTAATTAATTATGAAAAA
71039561 GTGGTCCAGTTGAATTGAACTGTGTGAACTGAACCGACCAAGAAATGGACAGCCCAAAAAACCAT
131 GTGGTCCAGTTGAATTGAACTGTGTGAACTGAACCGACCAAGAAATGGACAGCCCAAAAAACCAT
71039626 CCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAAGCT
196 CCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAAGCT
71039671 TGCAAAGAGA
Statistics
Matches: 240, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
240 240 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (240 bp):
GCATTGAGGTGAACTAAAATTTAGCCTAAGAAGGTCCAAAATTATATGTATTAATTCATAATATA
ATTAATTTTAATTTATATCCAATTTAATTTGGGTTAATAAATTATTATTAATTAATTATGAAAAA
GTGGTCCAGTTGAATTGAACTGTGTGAACTGAACCGACCAAGAAATGGACAGCCCAAAAAACCAT
CCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAAGCT
Found at i:71046109 original size:50 final size:50
Alignment explanation
Indices: 71046043--71046141 Score: 162
Period size: 50 Copynumber: 2.0 Consensus size: 50
71046033 TGAGGTTATG
* * *
71046043 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGATATA
1 AGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGATATA
*
71046093 AGAGGTCCCCCATAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
71046142 GAGAACTCAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGATATA
Found at i:71046159 original size:50 final size:50
Alignment explanation
Indices: 71046053--71046171 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 50
71046043 AGAGGTCCCA
* * ** *
71046053 CGTAAGACCATGTCTGGGACATGGCGTTGGCACCGATATAAGAGGTCCCC
1 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATAAGAACTCACC
* * **
71046103 CATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCATG
1 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATAAGAACTCACC
* *
71046153 TGTAAGACCATATCTGGGA
1 CGTAAGACCATGTCTGGGA
71046172 TTTGACATTT
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATAAGAACTCACC
Found at i:71058472 original size:79 final size:81
Alignment explanation
Indices: 71058363--71058545 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
71058353 TACTCGTTCA
* *
71058363 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
71058426 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
71058443 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
71058506 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
71058522 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
71058546 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:71058545 original size:40 final size:40
Alignment explanation
Indices: 71058342--71058545 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
71058332 CGGAATTTAA
** *
71058342 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71058382 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71058422 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71058461 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
71058501 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71058541 CCGGA
1 CCGGA
71058546 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71059740 original size:56 final size:56
Alignment explanation
Indices: 71059673--71059792 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
71059663 TATTAGTTTA
71059673 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
71059729 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
71059785 TTGCCCAT
1 TTGCCCAT
71059793 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:71060528 original size:50 final size:50
Alignment explanation
Indices: 71060458--71060553 Score: 156
Period size: 50 Copynumber: 1.9 Consensus size: 50
71060448 TGAGGTTATG
* * *
71060458 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATA
1 AGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATA
*
71060508 AGAGGTCCCCCATAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 AGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGA
71060554 TATGAGAACT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.26, C:0.26, G:0.31, T:0.17
Consensus pattern (50 bp):
AGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATA
Found at i:71060574 original size:50 final size:50
Alignment explanation
Indices: 71060468--71060586 Score: 130
Period size: 50 Copynumber: 2.4 Consensus size: 50
71060458 AGAGGTCCCA
* * ** *
71060468 CGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCC
1 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCACC
* * * **
71060518 CATAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCATG
1 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCACC
* *
71060568 TGTAAGACCATATCTGGGA
1 CGTAAGACCATGTCTGGGA
71060587 TTTGACATTT
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 56 1.00
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (50 bp):
CGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATAAGAACTCACC
Found at i:71060867 original size:12 final size:12
Alignment explanation
Indices: 71060850--71060888 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
71060840 ATGAGTTATT
*
71060850 TAAGTAAGCAAG
1 TAAGTAAACAAG
71060862 TAAGTAAACAAG
1 TAAGTAAACAAG
* *
71060874 TAAGTGAATAAG
1 TAAGTAAACAAG
71060886 TAA
1 TAA
71060889 AGAAGAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.54, C:0.05, G:0.21, T:0.21
Consensus pattern (12 bp):
TAAGTAAACAAG
Found at i:71064901 original size:20 final size:20
Alignment explanation
Indices: 71064873--71064910 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
71064863 AATTTTTCTC
71064873 CTAAATTTTAATTTTATTAT
1 CTAAATTTTAATTTTATTAT
*
71064893 CTAATTTTTAATTTTATT
1 CTAAATTTTAATTTTATT
71064911 GAATTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (20 bp):
CTAAATTTTAATTTTATTAT
Found at i:71068292 original size:509 final size:509
Alignment explanation
Indices: 71067335--71068352 Score: 2036
Period size: 509 Copynumber: 2.0 Consensus size: 509
71067325 TTAGTGGAGA
71067335 AAAATTACTATGTCAACATATGAAGGCATAAGTTAAACTTAATGATTGCAACTTAATCTTGAATA
1 AAAATTACTATGTCAACATATGAAGGCATAAGTTAAACTTAATGATTGCAACTTAATCTTGAATA
71067400 AGGAAATAAAATCAAATTGGTAAGGGTTAACATGTCTTGTTAAGGGAGCTTTTAGTCTAATTTTT
66 AGGAAATAAAATCAAATTGGTAAGGGTTAACATGTCTTGTTAAGGGAGCTTTTAGTCTAATTTTT
71067465 CTATCATAATAGTTGTTGAGATTAATTTAAACGATATGTATACTTAAGTAGCATAACTATCAAAT
131 CTATCATAATAGTTGTTGAGATTAATTTAAACGATATGTATACTTAAGTAGCATAACTATCAAAT
71067530 TTCTTGTTTTTGAGCATAAGTATATTAAATTCATAATTCTGGGAAGGATGTTATTCTGAAGGAAT
196 TTCTTGTTTTTGAGCATAAGTATATTAAATTCATAATTCTGGGAAGGATGTTATTCTGAAGGAAT
71067595 TTTTCAAAGGTGTTTTCTGAGTAATTCTTTTTAATTTGTGCATTACTCGAGACGAGCAATGAATT
261 TTTTCAAAGGTGTTTTCTGAGTAATTCTTTTTAATTTGTGCATTACTCGAGACGAGCAATGAATT
71067660 AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
326 AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
71067725 TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
391 TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
71067790 AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTT
456 AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTT
71067844 AAAATTACTATGTCAACATATGAAGGCATAAGTTAAACTTAATGATTGCAACTTAATCTTGAATA
1 AAAATTACTATGTCAACATATGAAGGCATAAGTTAAACTTAATGATTGCAACTTAATCTTGAATA
71067909 AGGAAATAAAATCAAATTGGTAAGGGTTAACATGTCTTGTTAAGGGAGCTTTTAGTCTAATTTTT
66 AGGAAATAAAATCAAATTGGTAAGGGTTAACATGTCTTGTTAAGGGAGCTTTTAGTCTAATTTTT
71067974 CTATCATAATAGTTGTTGAGATTAATTTAAACGATATGTATACTTAAGTAGCATAACTATCAAAT
131 CTATCATAATAGTTGTTGAGATTAATTTAAACGATATGTATACTTAAGTAGCATAACTATCAAAT
71068039 TTCTTGTTTTTGAGCATAAGTATATTAAATTCATAATTCTGGGAAGGATGTTATTCTGAAGGAAT
196 TTCTTGTTTTTGAGCATAAGTATATTAAATTCATAATTCTGGGAAGGATGTTATTCTGAAGGAAT
71068104 TTTTCAAAGGTGTTTTCTGAGTAATTCTTTTTAATTTGTGCATTACTCGAGACGAGCAATGAATT
261 TTTTCAAAGGTGTTTTCTGAGTAATTCTTTTTAATTTGTGCATTACTCGAGACGAGCAATGAATT
71068169 AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
326 AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
71068234 TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
391 TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
71068299 AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTT
456 AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTT
71068353 TGGTTATTTT
Statistics
Matches: 509, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
509 509 1.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (509 bp):
AAAATTACTATGTCAACATATGAAGGCATAAGTTAAACTTAATGATTGCAACTTAATCTTGAATA
AGGAAATAAAATCAAATTGGTAAGGGTTAACATGTCTTGTTAAGGGAGCTTTTAGTCTAATTTTT
CTATCATAATAGTTGTTGAGATTAATTTAAACGATATGTATACTTAAGTAGCATAACTATCAAAT
TTCTTGTTTTTGAGCATAAGTATATTAAATTCATAATTCTGGGAAGGATGTTATTCTGAAGGAAT
TTTTCAAAGGTGTTTTCTGAGTAATTCTTTTTAATTTGTGCATTACTCGAGACGAGCAATGAATT
AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTT
Found at i:71069281 original size:587 final size:587
Alignment explanation
Indices: 71068169--71069342 Score: 2348
Period size: 587 Copynumber: 2.0 Consensus size: 587
71068159 GCAATGAATT
71068169 AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
1 AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
71068234 TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
66 TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
71068299 AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTTTGGTTATTTTC
131 AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTTTGGTTATTTTC
71068364 GATAGATTTGCACAAAGGGCGAAAAATGACTCAGCAAACATTGATAGAAGCACAAAACCGAGAAG
196 GATAGATTTGCACAAAGGGCGAAAAATGACTCAGCAAACATTGATAGAAGCACAAAACCGAGAAG
71068429 CAATTTGAAGTATCAAGGTGAACTAAATTTTAGCCTAAGATGGTCCAAAATTATATTTATTAATT
261 CAATTTGAAGTATCAAGGTGAACTAAATTTTAGCCTAAGATGGTCCAAAATTATATTTATTAATT
71068494 CATAATATAATTAATTTTAATTTATATCCAATTTAACTTGGGTTAATAAATTATTATTAATTAAT
326 CATAATATAATTAATTTTAATTTATATCCAATTTAACTTGGGTTAATAAATTATTATTAATTAAT
71068559 TATGAAAAAGTGGTCCAGTTGAACTAAACCGTGTGAACCGAACCGACCAAGAAATGGACAGCCCA
391 TATGAAAAAGTGGTCCAGTTGAACTAAACCGTGTGAACCGAACCGACCAAGAAATGGACAGCCCA
71068624 AAAAAGGGTCCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAATCTTGCAAAGAGGC
456 AAAAAGGGTCCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAATCTTGCAAAGAGGC
71068689 CCTTGAACACTTTTTTAAGTTGCATTCAAACCCCTCCACAATTGGTGGCTTTATAGATTTGCCCC
521 CCTTGAACACTTTTTTAAGTTGCATTCAAACCCCTCCACAATTGGTGGCTTTATAGATTTGCCCC
71068754 AA
586 AA
71068756 AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
1 AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
71068821 TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
66 TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
71068886 AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTTTGGTTATTTTC
131 AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTTTGGTTATTTTC
71068951 GATAGATTTGCACAAAGGGCGAAAAATGACTCAGCAAACATTGATAGAAGCACAAAACCGAGAAG
196 GATAGATTTGCACAAAGGGCGAAAAATGACTCAGCAAACATTGATAGAAGCACAAAACCGAGAAG
71069016 CAATTTGAAGTATCAAGGTGAACTAAATTTTAGCCTAAGATGGTCCAAAATTATATTTATTAATT
261 CAATTTGAAGTATCAAGGTGAACTAAATTTTAGCCTAAGATGGTCCAAAATTATATTTATTAATT
71069081 CATAATATAATTAATTTTAATTTATATCCAATTTAACTTGGGTTAATAAATTATTATTAATTAAT
326 CATAATATAATTAATTTTAATTTATATCCAATTTAACTTGGGTTAATAAATTATTATTAATTAAT
71069146 TATGAAAAAGTGGTCCAGTTGAACTAAACCGTGTGAACCGAACCGACCAAGAAATGGACAGCCCA
391 TATGAAAAAGTGGTCCAGTTGAACTAAACCGTGTGAACCGAACCGACCAAGAAATGGACAGCCCA
71069211 AAAAAGGGTCCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAATCTTGCAAAGAGGC
456 AAAAAGGGTCCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAATCTTGCAAAGAGGC
71069276 CCTTGAACACTTTTTTAAGTTGCATTCAAACCCCTCCACAATTGGTGGCTTTATAGATTTGCCCC
521 CCTTGAACACTTTTTTAAGTTGCATTCAAACCCCTCCACAATTGGTGGCTTTATAGATTTGCCCC
71069341 AA
586 AA
71069343 GCCTAAATTA
Statistics
Matches: 587, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
587 587 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (587 bp):
AAGATTGGGGGTGTGGAAACACGAAAATTTACACATTTTTACATTCCCTTTTTAACTTAAAATCA
TACAGTTTCGATAAAATTCTTGTTGAAAAAATAATTAATTTTTACAAGATAATTAAAGTGCACAT
AAAATATGAACATGTTCAATTTTAGTTAATTTTATAATTAATTTTGATGAATTTTGGTTATTTTC
GATAGATTTGCACAAAGGGCGAAAAATGACTCAGCAAACATTGATAGAAGCACAAAACCGAGAAG
CAATTTGAAGTATCAAGGTGAACTAAATTTTAGCCTAAGATGGTCCAAAATTATATTTATTAATT
CATAATATAATTAATTTTAATTTATATCCAATTTAACTTGGGTTAATAAATTATTATTAATTAAT
TATGAAAAAGTGGTCCAGTTGAACTAAACCGTGTGAACCGAACCGACCAAGAAATGGACAGCCCA
AAAAAGGGTCCCAAGAGCTGACCCAAATCAGCTTATTAGCTGATTATTTAATCTTGCAAAGAGGC
CCTTGAACACTTTTTTAAGTTGCATTCAAACCCCTCCACAATTGGTGGCTTTATAGATTTGCCCC
AA
Found at i:71084442 original size:23 final size:23
Alignment explanation
Indices: 71084416--71084463 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
71084406 CATATAAACA
* * *
71084416 AACATGTTTGCGAATGTTAAATG
1 AACATGTTCGCGAACGCTAAATG
71084439 AACATGTTCGCGAACGCTAAATG
1 AACATGTTCGCGAACGCTAAATG
71084462 AA
1 AA
71084464 TTGAGCCTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.27
Consensus pattern (23 bp):
AACATGTTCGCGAACGCTAAATG
Found at i:71089920 original size:22 final size:22
Alignment explanation
Indices: 71089895--71089946 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
71089885 GTTATAATTC
*
71089895 TAAAAAATATTCCAAAATAAAT
1 TAAAAAATATTCCAAAACAAAT
* *
71089917 TAAAAAA-ATTCGATAACAAAT
1 TAAAAAATATTCCAAAACAAAT
71089938 TATAAAAAT
1 TA-AAAAAT
71089947 GATTTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 13 0.52
22 12 0.48
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAAAAATATTCCAAAACAAAT
Found at i:71091927 original size:32 final size:32
Alignment explanation
Indices: 71091883--71091949 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
71091873 AAGCATAAAG
*
71091883 CTTAGTACGATAATATGGAAATACCTTATATA
1 CTTAGTAAGATAATATGGAAATACCTTATATA
71091915 CTTAGTAAGATAATATGGAAATACCTTATATA
1 CTTAGTAAGATAATATGGAAATACCTTATATA
71091947 CTT
1 CTT
71091950 GTCTTTAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (32 bp):
CTTAGTAAGATAATATGGAAATACCTTATATA
Found at i:71098388 original size:22 final size:20
Alignment explanation
Indices: 71098363--71098406 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
71098353 TATGCATTTA
*
71098363 TAATTATAATTTTAACTATGTT
1 TAATTAAAATTTTAA-T-TGTT
71098385 TAATTAAAATTTTAATTGTT
1 TAATTAAAATTTTAATTGTT
71098405 TA
1 TA
71098407 CGATTCGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 1 0.05
22 14 0.67
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (20 bp):
TAATTAAAATTTTAATTGTT
Found at i:71101509 original size:42 final size:42
Alignment explanation
Indices: 71101462--71101559 Score: 169
Period size: 42 Copynumber: 2.3 Consensus size: 42
71101452 GCTCTCGGTA
* *
71101462 TCGCACACTTAGTGCCCGTTATTCAACATCATCATTTTAATT
1 TCGCACACTTAGTGCCCATTATCCAACATCATCATTTTAATT
*
71101504 TCGCACACTTAGTGCCCATTATCCAACATCATTATTTTAATT
1 TCGCACACTTAGTGCCCATTATCCAACATCATCATTTTAATT
71101546 TCGCACACTTAGTG
1 TCGCACACTTAGTG
71101560 TCGTTCATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.37
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCATTATCCAACATCATCATTTTAATT
Found at i:71101991 original size:16 final size:17
Alignment explanation
Indices: 71101958--71101991 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
71101948 TATAAAGTTA
*
71101958 ATATTTACCTTATTACT
1 ATATTAACCTTATTACT
71101975 ATATTAACCTT-TTACT
1 ATATTAACCTTATTACT
71101991 A
1 A
71101992 ATAATTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTAACCTTATTACT
Found at i:71110987 original size:11 final size:11
Alignment explanation
Indices: 71110957--71110990 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
71110947 AATATTGTAT
71110957 TTATTAATTT-
1 TTATTAATTTA
71110967 TTATTAATTTA
1 TTATTAATTTA
*
71110978 TTATTTATTTA
1 TTATTAATTTA
71110989 TT
1 TT
71110991 CCAAATTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATTAATTTA
Found at i:71111249 original size:27 final size:27
Alignment explanation
Indices: 71111198--71111249 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
71111188 GTTAATAAAA
*
71111198 TTCTCTTTGAGTTTTCTTTTTAAGAAT
1 TTCTCTTTGAGTTTTCTTTTGAAGAAT
71111225 TTCTC-TTGAGTTTTCTTTTAGAAGA
1 TTCTCTTTGAGTTTTCTTTT-GAAGA
71111250 GTTTTAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.19, C:0.12, G:0.13, T:0.56
Consensus pattern (27 bp):
TTCTCTTTGAGTTTTCTTTTGAAGAAT
Found at i:71117442 original size:5 final size:6
Alignment explanation
Indices: 71117417--71117452 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
71117407 TAATATTGTG
71117417 TTATTAT TTATTT TTATTT TTATTT TTA-TT TTATTT
1 TTATT-T TTATTT TTATTT TTATTT TTATTT TTATTT
71117453 CGTTCATACC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.18
6 18 0.64
7 5 0.18
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:71117531 original size:27 final size:28
Alignment explanation
Indices: 71117483--71117538 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
71117473 CAAAATTTTG
* * *
71117483 TTATATATATACATATATACATGTATTT
1 TTATATATATACATACACACATATATTT
*
71117511 TTATA-ATATACATACGCACATATATTT
1 TTATATATATACATACACACATATATTT
71117538 T
1 T
71117539 ATGTTTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (28 bp):
TTATATATATACATACACACATATATTT
Found at i:71117780 original size:26 final size:26
Alignment explanation
Indices: 71117722--71117783 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
71117712 AAGTATACTT
* **
71117722 ATATACATTTTATAATACATATATGT
1 ATATATATTTTATAATACATATATAC
* **
71117748 ACATATATTTTATAATTTATATATAC
1 ATATATATTTTATAATACATATATAC
71117774 ATATATATTT
1 ATATATATTT
71117784 GTTATATTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (26 bp):
ATATATATTTTATAATACATATATAC
Found at i:71123455 original size:13 final size:13
Alignment explanation
Indices: 71123439--71123473 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
71123429 ATTATATTTC
71123439 AAAAAAA-AATAAG
1 AAAAAAAGAA-AAG
71123452 AAAAAAAGAAAAG
1 AAAAAAAGAAAAG
71123465 AAAAAAAGA
1 AAAAAAAGA
71123474 GAGGCCAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 19 0.90
14 2 0.10
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (13 bp):
AAAAAAAGAAAAG
Found at i:71124955 original size:50 final size:50
Alignment explanation
Indices: 71124877--71128241 Score: 2194
Period size: 50 Copynumber: 67.3 Consensus size: 50
71124867 TATCCCCCTA
* * * *
71124877 AATAGATTGAAGCTACAACAGCTAATCTTACTTCCTTAGTGGTGTAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * ** **
71124927 AACAGATTGAAGCTACAACAGCGAATCTTACTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * * * **
71124977 AATAGATTCAAACTACAACAGCAAATCCTACTTCCCT-GGGTGTGCAACGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCG-GTGCAGTGG
* * * * * ** *
71125027 AACAGATTGAAGCTACAACA-TGAATCTTGCTTCCCCAACATTGCAGT-T
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * *
71125075 ATATAGATTGAAGCTACAACAGTGAATCTTACCTCCCTGGCGGTGCAGTGG
1 A-ATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * ** * **
71125126 AACAGATTGAAGCTACAACAGCGAATCTTGCTTCCC-CGACATTACAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* ** * *
71125176 AATAGATTGAAGCTACAATAGCGAATCTTACTTTTCTGGCGGTACAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * ** * * ** **
71125226 AACAGATTGAAGCTACAATAATGAATCTTGCTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * *
71125276 AATAGATTG-AGCTACAACAGTGAATCTTACTTCCCTGGCGGTGTAGTCG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * ** **
71125325 AACAGATTGAAGCTACAATAGCAAATCTTTCTTCCCT-GACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * ** **
71125375 AATAAATTGAAGTTACAACAGTAAATCTTACTTCCCTAGTAGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * ** * **
71125425 AACAGATTGAAGCTACAACAGAGAATCTTGCTTCCCT-GACATTGTAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* *
71125475 AATAGATTTG-AGCTACAACAGCGAATCTTACTTTCC-AGGCGGTGCAGTAG
1 AATAGA-TTGAAGCTACAACAGCGAATCTTACTTCCCTA-GCGGTGCAGTGG
* * * * * **
71125525 AACAGATTGAAGCTACAACAGTGAATCTTGCTTCCC-CGACAGTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* ** *
71125575 AATAGATTGAAGCTACAATAGCGAATCTTACTTCTTTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * * *** **
71125625 GATAGATTGAAACTACAACAGCGAATTTTGCTT-CCTCGAAATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* *
71125675 AATAGATTGGAGCTACAACAGCGAATTTTACTTCCCT-GACGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * * * ** **
71125725 AACAGATTGAAGCAACAACAGTGAATCTTGCTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * * * *
71125775 AATAGATTGAAGCTACAACAACAAATCTTACTTTCCTGGCGATGTAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * *** **
71125825 AATAGATTGAAGCTACGACAGCGAATCTTGCTTCCC-CGAAATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * * * *
71125875 AATATATTAAAGCTACAACAGCGAATCTTACTTCCCTGGTGATGTAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * ** * * * ** **
71125925 AACAGATTGAAGCTACAATAATGAATATTGCTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * * * *
71125975 AATAGATTGAAGCTACAACAGCGAATGTTACATCCCTGGTGATACAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * ** **
71126025 AACAGATTGAAGCGACAACAGTGAATCTTACTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * * *
71126075 AATAGATTAAAGCTACAATAGCAAATCTTACTTCCTTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * ** **
71126125 AACAGATTGAAGCTACAACAGCGAATCTTACTTCTCCGA-CATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTC-CCTAGCGGTGCAGTGG
* * * *
71126175 AATAGATTGAAGCTACAACGAGTGACTCTTACTTCCCTGGCGGTGTAGTGG
1 AATAGATTGAAGCTACAAC-AGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * ** * **
71126226 AACAGATTGAAGCTACAACAGTGAATCTTGCTTCCC-CGACATTGCAATTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * **
71126276 AATAAATTGAAGCTACAACAGCGAATCTTACTTCCCT-GACAGTGTAGTCA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * * ** * *
71126326 AACAGATTGAAGCTACAACAACGAATCTTGCTTCACC-AACATTGAAGT-T
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTC-CCTAGCGGTGCAGTGG
* *
71126375 AGATAGATTGAAGTTACAACAGTGAATCTTACTTCCCTAGTGCGGT--AGTGG
1 A-ATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTA--GCGGTGCAGTGG
* * * ** **
71126426 AACAGATTGAAGCTACAACAGTGAATCTTGA-TTCCCTAACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTT-ACTTCCCTAGCGGTGCAGTGG
* * * *
71126476 AATCGATTGAAGCTACAACAGTGAATCTTACTTCCCTCGCGGTG-GGATGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAG-TGG
* * * ** **
71126526 AATAGATTGAAGCTACAACAGTGAATCTTGCTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * ** * *
71126576 AATAGATTGAAGCTGCAACAGTGAATCTTACTTCTTTGGCGGTACAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * ** * **
71126626 GATTGATTGAAGCTACAACAGCGAATCTTGCTTCCC-CGACATTACAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * *
71126676 AATAGATTGAAGCTACAACAACGAATCTTACTTCCCTGGCAGTGTAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * * ** **
71126726 AACATATTGAAGCTACAACAGTGAATCTTGCTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* *
71126776 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * * **** * **
71126826 AACAGATTGAAGCTACAACAACAAATCTTGCTTCCCCAAAATTCCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * *
71126876 AATAGACTAAAGCTACAATAGCAAATCTTACCTCCCT-GCCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * ** * * ** * **
71126926 AACAGATTGAAGCTACAATAGTTAATCTTGCTTCCC-CGACATTGCAATTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * *
71126976 AATAGATTGAAGCTACAACAACGAATCTTACTTCCTTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * ** * **
71127026 AATAGATTGAAGCTACAATAGTGAATCTTGCTTCCC-CGACATTGCAATTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* *
71127076 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCTTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * ** * **
71127126 AATAGATTGAAGCTACAATAGTGAATCTTTCTTCCC-CGACATTGCAATTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
** *
71127176 AATAGATTGAAGCTACAACAGTAAATCTTACTTCCTTAGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * *
71127226 GATAGATTGAAGCTACAACAGCGAATCTTACTTCCTTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * * ** **
71127276 GATAGATTGAAGGTACAACAGCGAATCTTGCTTCCCCAACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* *
71127326 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGATGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* *** * * ** **
71127376 AACAGATTGAAGCTACAACAATAAATCTTGCTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * ** * *
71127426 AATAGATTGAAACTATAACAATGAATCTTACTT-CCTAGGCGGTGTAGTCG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTA-GCGGTGCAGTGG
* * * * **** **
71127476 AATGGATTGAAGCTACAACAGCAAATCTTGCTTCCCCAATATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* *
71127526 AATAGATTGAAGCTACAACAGCGAATCTTACCTCCCTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * ** * **
71127576 AACAGATTGAAGCTACAACAGCGAATCTTGCTTTCCT-GACATTGTAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * *
71127626 AATAGATTGAAGCTACAACAACGAATCTTACTTCTCTGGCGGTGTAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * ** **
71127676 AACAGATAGAAGCTACAACAGCGAATCTTGCTTCCCCCA-CATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTT-CCCTAGCGGTGCAGTGG
* * * * * *
71127726 AATAGATTGAAGTTACAACTGTGAATCTTACTTCCCTGGCGGTGTAATGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* *** * **
71127776 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCC-CGAAATTGTAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * *
71127826 AATAGATTGAAACTACAACAGCGAATCTTACTTCCTTGGCGGTGCAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * * * * * * ** **
71127876 AACATATTTAAGCTATAATAGTGAATCCTGCTTCCC-CGACATTGCAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
*
71127926 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGTAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * ** * **
71127976 AACAGATTGAAGCTACAACAGCGAATCTTGCTTCCC-CGACATTACAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
*** * *
71128026 AATAGATTGAAGCTACAACAGCGAATCTTACTTTTTTGGCGGTACAGTGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
* * * * ** * **
71128076 GATTGATTGAAGCTACAACAGCGAATCTTGCTTCCC-CGACATTACAGTTA
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAG-CGGTGCAGTGG
* * * * * *
71128126 AATAGATTGAAGCTACAATAGCGAATCATATTTCTCTGGC-GTGGCAATGG
1 AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGT-GCAGTGG
* * * ** *
71128176 AACAGATTAAAGCTA-AAGGTAGCGAATCTTGTTTCCCTAGCGTTGCTA-TGG
1 AATAGATTGAAGCTACAA--CAGCGAATCTTACTTCCCTAGCGGTGC-AGTGG
*
71128227 AATAGATTAAAGCTA
1 AATAGATTGAAGCTA
71128242 AAGCGGAGTA
Statistics
Matches: 2523, Mismatches: 709, Indels: 165
0.74 0.21 0.05
Matches are distributed among these distances:
48 3 0.00
49 110 0.04
50 2294 0.91
51 112 0.04
52 4 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (50 bp):
AATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTAGCGGTGCAGTGG
Found at i:71125193 original size:100 final size:100
Alignment explanation
Indices: 71124875--71127811 Score: 3253
Period size: 100 Copynumber: 29.4 Consensus size: 100
71124865 CCTATCCCCC
* * * * *
71124875 TAAATAGATTGAAGCTACAACAGCTAATCTTACTTCCTTAGTGGTGTAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* *
71124940 TACAACAGCGAATCTTACTTCCCCGACATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * * **
71124975 TAAATAGATTCAAACTACAACAGCAAATCCTACTTCCCTGG-GTGTGCAACGGAACAGATTGAAG
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCG-GTGCAGTGGAACAGATTGAAG
*
71125039 CTACAACA-TGAATCTTGCTTCCCCAACATTGCAGT
65 CTACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * *
71125074 TATATAGATTGAAGCTACAACAGTGAATCTTACCTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* *
71125139 TACAACAGCGAATCTTGCTTCCCCGACATTACAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* ** *
71125174 TAAATAGATTGAAGCTACAATAGCGAATCTTACTTTTCTGGCGGTACAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* *
71125239 TACAATAATGAATCTTGCTTCCCCGACATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * *
71125274 TAAATAGATTG-AGCTACAACAGTGAATCTTACTTCCCTGGCGGTGTAGTCGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* ** * *
71125338 TACAATAGCAAATCTTTCTTCCCTGACATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * ** * **
71125373 TAAATAAATTGAAGTTACAACAGTAAATCTTACTTCCCTAGTAGTGCAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * *
71125438 TACAACAGAGAATCTTGCTTCCCTGACATTGTAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * *
71125473 TAAATAGATTTG-AGCTACAACAGCGAATCTTACTTTCCAGGCGGTGCAGTAGAACAGATTGAAG
1 TAAATAGA-TTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
*
71125537 CTACAACAGTGAATCTTGCTTCCCCGACAGTGCAGT
65 CTACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* ** * * *
71125573 TAAATAGATTGAAGCTACAATAGCGAATCTTACTTCTTTGGCGGTGCAGTGGGATAGATTGAAAC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * *
71125638 TACAACAGCGAATTTTGCTTCCTCGAAATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * *
71125673 TAAATAGATTGGAGCTACAACAGCGAATTTTACTTCCCTGACGGTGCAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
*
71125738 AACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * * * *
71125773 TAAATAGATTGAAGCTACAACAACAAATCTTACTTTCCTGGCGATGTAGTGGAATAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * *
71125838 TACGACAGCGAATCTTGCTTCCCCGAAATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * * *
71125873 TAAATATATTAAAGCTACAACAGCGAATCTTACTTCCCTGGTGATGTAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * *
71125938 TACAATAATGAATATTGCTTCCCCGACATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * * *
71125973 TAAATAGATTGAAGCTACAACAGCGAATGTTACATCCCTGGTGATACAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* *
71126038 GACAACAGTGAATCTTACTTCCCCGACATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * *
71126073 TAAATAGATTAAAGCTACAATAGCAAATCTTACTTCCTTGGCGGTGCAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * *
71126138 TACAACAGCGAATCTTACTTCTCCGACATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * *
71126173 TAAATAGATTGAAGCTACAACGAGTGACTCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAG
1 TAAATAGATTGAAGCTACAAC-AGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAG
*
71126238 CTACAACAGTGAATCTTGCTTCCCCGACATTGCAAT
65 CTACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * * **
71126274 TAAATAAATTGAAGCTACAACAGCGAATCTTACTTCCCTGACAGTGTAGTCAAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
** * * *
71126339 TACAACAACGAATCTTGCTTCACCAACATTGAAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * *
71126374 TAGATAGATTGAAGTTACAACAGTGAATCTTACTTCCCTAGTGCGGT--AGTGGAACAGATTGAA
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCT-G-GCGGTGCAGTGGAACAGATTGAA
* **
71126437 GCTACAACAGTGAATCTTGATTCCCTAACATTGCAGT
64 GCTACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * * *
71126474 TAAATCGATTGAAGCTACAACAGTGAATCTTACTTCCCTCGCGGTG-GGATGGAATAGATTGAAG
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAG-TGGAACAGATTGAAG
71126538 CTACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
65 CTACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * ** * * **
71126574 TAAATAGATTGAAGCTGCAACAGTGAATCTTACTTCTTTGGCGGTACAGTGGGATTGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* *
71126639 TACAACAGCGAATCTTGCTTCCCCGACATTACAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * *
71126674 TAAATAGATTGAAGCTACAACAACGAATCTTACTTCCCTGGCAGTGTAGTGGAACATATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
71126739 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
*
71126774 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
*** * * *
71126839 TACAACAACAAATCTTGCTTCCCCAAAATTCCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * * * * *
71126874 TAAATAGACTAAAGCTACAATAGCAAATCTTACCTCCCTGCCGGTGCAGTGGAACAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * *
71126939 TACAATAGTTAATCTTGCTTCCCCGACATTGCAAT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* * *
71126974 TAAATAGATTGAAGCTACAACAACGAATCTTACTTCCTTGGCGGTGCAGTGGAATAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* *
71127039 TACAATAGTGAATCTTGCTTCCCCGACATTGCAAT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
* *
71127074 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCTTGGCGGTGCAGTGGAATAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * *
71127139 TACAATAGTGAATCTTTCTTCCCCGACATTGCAAT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
** * * * *
71127174 TAAATAGATTGAAGCTACAACAGTAAATCTTACTTCCTTAGCGGTGCAGTGGGATAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * ** * **
71127239 TACAACAGCGAATCTTACTTCCTTGGCGGTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
*** * * *** ** ** *
71127274 GGGATAGATTGAAGGTACAACAGCGAATCTTGCTTCCCCAACATTGCAGTTAAATAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * *
71127339 TACAACAGCGAATCTTACTTCCCTGGCGA-TGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGAC-ATTGCAGT
** * *** * * * ** ** * *
71127374 GGAACAGATTGAAGCTACAACAATAAATCTTGCTTCCCCGACATTGCAGTTAAATAGATTGAAAC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * ** * ** *
71127439 TATAACAATGAATCTTACTTCCTAGGCGGTGTAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
** * * * ****** ** *
71127474 CGAATGGATTGAAGCTACAACAGCAAATCTTGCTTCCCCAATATTGCAGTTAAATAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * * **
71127539 TACAACAGCGAATCTTACCTCCCTGGCGGTGCAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
** * * * * ** * ** *
71127574 GGAACAGATTGAAGCTACAACAGCGAATCTTGCTTTCCTGACATTGTAGTTAAATAGATTGAAGC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
** * * * * ** *
71127639 TACAACAACGAATCTTACTTCTCTGGCGGTGTAGT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
** * * * *** ** ** * *
71127674 GGAACAGATAGAAGCTACAACAGCGAATCTTGCTTCCCCCACATTGCAGTTAAATAGATTGAAGT
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
* * * * ** * *
71127739 TACAACTGTGAATCTTACTTCCCTGGCGGTGTAAT
66 TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
**
71127774 GGAATAGATTGAAGCTACAACAGCGAATCTTACTTCCC
1 TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCC
71127812 CGAAATTGTA
Statistics
Matches: 2477, Mismatches: 346, Indels: 28
0.87 0.12 0.01
Matches are distributed among these distances:
98 5 0.00
99 176 0.07
100 2198 0.89
101 95 0.04
102 3 0.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (100 bp):
TAAATAGATTGAAGCTACAACAGCGAATCTTACTTCCCTGGCGGTGCAGTGGAACAGATTGAAGC
TACAACAGTGAATCTTGCTTCCCCGACATTGCAGT
Found at i:71128227 original size:51 final size:51
Alignment explanation
Indices: 71128144--71128244 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
71128134 GAAGCTACAA
* *
71128144 TAGCGAATCATATTTCTCTGGCGTGGCAATGGAACAGATTAAAGCTAAAGG
1 TAGCGAATCATATTTCCCTAGCGTGGCAATGGAACAGATTAAAGCTAAAGG
* * * * *
71128195 TAGCGAATCTTGTTTCCCTAGCGTTGCTATGGAATAGATTAAAGCTAAAG
1 TAGCGAATCATATTTCCCTAGCGTGGCAATGGAACAGATTAAAGCTAAAG
71128245 CGGAGTAGAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (51 bp):
TAGCGAATCATATTTCCCTAGCGTGGCAATGGAACAGATTAAAGCTAAAGG
Found at i:71128654 original size:44 final size:44
Alignment explanation
Indices: 71128533--71128707 Score: 151
Period size: 44 Copynumber: 3.9 Consensus size: 44
71128523 AAAGTAGATC
* *
71128533 ATAT-CAAACCTTATCTACCTGAAGTTGCAGTGGAGCCA-ATTGAACA
1 ATATACAAACCTTATCTCCCTGAAGTTGCAGTGGAG-CAGGTTG---A
* ** * *
71128579 CATGCTACAAGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGA
1 -AT-ATACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGA
*
71128625 AGTA-ACAAACCTTATC-CCCTTGAAGTTGCAGTGGGGCAGGTTGA
1 A-TATACAAACCTTATCTCCC-TGAAGTTGCAGTGGAGCAGGTTGA
* **
71128669 ATATGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 ATATACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
71128708 ACTGAAGCTA
Statistics
Matches: 104, Mismatches: 17, Indels: 17
0.75 0.12 0.12
Matches are distributed among these distances:
43 4 0.04
44 60 0.58
45 4 0.04
46 2 0.02
47 2 0.02
48 3 0.03
49 29 0.28
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (44 bp):
ATATACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGA
Found at i:71130568 original size:58 final size:59
Alignment explanation
Indices: 71130459--71130569 Score: 145
Period size: 58 Copynumber: 1.9 Consensus size: 59
71130449 TTTTATATAT
* * *
71130459 TTATACATACATATGTGTTTTATATTCTATAACTTTAATATATATATATACATGCATTC
1 TTATACATACATATGTGTTTTACATTCTATAACTCTAATATATATACATACATGCATTC
* * *
71130518 TTATA-ATATATATGTGTTTTACATTTTATAACTCCT-ATATCTATACATACAT
1 TTATACATACATATGTGTTTTACATTCTATAACT-CTAATATATATACATACAT
71130570 ATATTCTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
58 39 0.87
59 6 0.13
ACGTcount: A:0.35, C:0.13, G:0.05, T:0.48
Consensus pattern (59 bp):
TTATACATACATATGTGTTTTACATTCTATAACTCTAATATATATACATACATGCATTC
Found at i:71130638 original size:26 final size:26
Alignment explanation
Indices: 71130609--71130662 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
71130599 ATCTTAAAAT
*
71130609 ATACATATACT-TATATACATTTTATA
1 ATACATATA-TGTACATACATTTTATA
*
71130635 ATACATATATGTACATATATTTTATA
1 ATACATATATGTACATACATTTTATA
71130661 AT
1 AT
71130663 TTATATATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (26 bp):
ATACATATATGTACATACATTTTATA
Found at i:71130668 original size:26 final size:24
Alignment explanation
Indices: 71130609--71130678 Score: 68
Period size: 26 Copynumber: 2.8 Consensus size: 24
71130599 ATCTTAAAAT
* *
71130609 ATACATATACTTATATACATTTTATA
1 ATACATATA--TACATATATTTTATA
71130635 ATACATATATGTACATATATTTTATA
1 ATACATATA--TACATATATTTTATA
**
71130661 ATTTATATATACATATAT
1 ATACATATATACATATAT
71130679 ATTTGTTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 9 0.24
26 29 0.76
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.47
Consensus pattern (24 bp):
ATACATATATACATATATTTTATA
Found at i:71130679 original size:26 final size:26
Alignment explanation
Indices: 71130621--71130682 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
71130611 ACATATACTT
* **
71130621 ATATACATTTTATAATACATATATGT
1 ATATATATTTTATAATACATATATAC
* **
71130647 ACATATATTTTATAATTTATATATAC
1 ATATATATTTTATAATACATATATAC
71130673 ATATATATTT
1 ATATATATTT
71130683 GTTATATTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (26 bp):
ATATATATTTTATAATACATATATAC
Found at i:71131237 original size:71 final size:71
Alignment explanation
Indices: 71131121--71131255 Score: 234
Period size: 71 Copynumber: 1.9 Consensus size: 71
71131111 TCTTTTCAAA
*
71131121 CTCAAGTTTTAAACCATCTCGGGAATGAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCCT
1 CTCAAGTTTTAAACCATCTCGGGAATGAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCT
71131186 TTTTTT
66 TTTTTT
** *
71131192 CTCAAGTTTTAAATTATCTCGGGAATTAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCC
1 CTCAAGTTTTAAACCATCTCGGGAATGAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCC
71131256 CCTTTTTTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 60 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (71 bp):
CTCAAGTTTTAAACCATCTCGGGAATGAAGAAAAGATCGTGTCCTAACTTACTGGGCATGATCCT
TTTTTT
Found at i:71134738 original size:20 final size:19
Alignment explanation
Indices: 71134705--71134750 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
71134695 TTTTTATTTT
71134705 AAAAATTTTAAAAAATTAAA
1 AAAAATTTTAAAAAA-TAAA
71134725 AAAATATTTT-AAAAATAAA
1 AAAA-ATTTTAAAAAATAAA
71134744 AAAAATT
1 AAAAATT
71134751 AAAAAAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.12
19 8 0.32
20 9 0.36
21 5 0.20
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAAATTTTAAAAAATAAA
Found at i:71134796 original size:39 final size:39
Alignment explanation
Indices: 71134724--71134872 Score: 169
Period size: 39 Copynumber: 3.7 Consensus size: 39
71134714 AAAAAATTAA
*
71134724 AAAAATATTTTAAAAATAAAAAAAATTAAAAAAAAAGTATTTT
1 AAAAATATTTT-AAAAT-TAAAAAATT--AAAAAAAGTATTTT
*
71134767 AAAAATATTTTAAAATTTAAAAATTAAAAAATA-TATTTT
1 AAAAATATTTTAAAATTAAAAAATTAAAAAA-AGTATTTT
* *
71134806 AAAAAGATTTTAAAATTAAAAAAAATT-AAAAAAGTA-TGT
1 AAAAATATTTTAAAATT--AAAAAATTAAAAAAAGTATTTT
*
71134845 AAAAATATTTTAAAATTAAAAAAATAAA
1 AAAAATATTTTAAAATTAAAAAATTAAA
71134873 TATATTTATT
Statistics
Matches: 94, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
37 7 0.07
38 2 0.02
39 47 0.50
40 8 0.09
41 14 0.15
42 5 0.05
43 11 0.12
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (39 bp):
AAAAATATTTTAAAATTAAAAAATTAAAAAAAGTATTTT
Found at i:71134824 original size:31 final size:27
Alignment explanation
Indices: 71134767--71134829 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 27
71134757 AAAGTATTTT
71134767 AAAAATATTTTAAAATTTAAAAATTAA
1 AAAAATATTTTAAAATTTAAAAATTAA
*
71134794 AAAATATATTTTAAAAAGATTTTAAAATTAA
1 AAAA-ATATTTT--AAA-ATTTAAAAATTAA
71134825 AAAAA
1 AAAAA
71134830 ATTAAAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
27 4 0.13
28 7 0.23
30 4 0.13
31 16 0.52
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (27 bp):
AAAAATATTTTAAAATTTAAAAATTAA
Found at i:71140813 original size:41 final size:40
Alignment explanation
Indices: 71140738--71140937 Score: 249
Period size: 41 Copynumber: 4.9 Consensus size: 40
71140728 CTAACCTTTC
* *
71140738 GGGGCTTTAGCGGCGTTTTTGCAAAAGCGTCGCTAATGCTT
1 GGGGCTTTAGCGGCGTTTTT-CAAAAGCGCCGCTAATGCTA
* *
71140779 GGGTCTTTAGCGGCGTTTTTCTAAAAACGCCGCTAATGCTA
1 GGGGCTTTAGCGGCGTTTTTC-AAAAGCGCCGCTAATGCTA
*
71140820 GGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCA
1 GGGGCTTTAGCGGCGTTTTT-CAAAAGCGCCGCTAATGCT-A
* *
71140862 -GGGTTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTA
1 GGGGCTTTAGCGGCGTTTTT-CAAAAGCGCCGCTAATGCTA
* * *
71140902 GGGGATTTAGCGGTGTTTTTGCAAAAGAGCCGCTAA
1 GGGGCTTTAGCGGCGTTTTT-CAAAAGCGCCGCTAA
71140938 AAACATTTTA
Statistics
Matches: 143, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.01
41 140 0.98
42 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.29
Consensus pattern (40 bp):
GGGGCTTTAGCGGCGTTTTTCAAAAGCGCCGCTAATGCTA
Found at i:71140875 original size:82 final size:82
Alignment explanation
Indices: 71140738--71140937 Score: 303
Period size: 82 Copynumber: 2.4 Consensus size: 82
71140728 CTAACCTTTC
* * *
71140738 GGGGCTTTAGCGGCGTTTTTGCAAAAGCGTCGCTAATGCTTGGGTCTTTAGCGGCGTTTTTCTAA
1 GGGGCTTTAGCGGCGTTTTTGCAAAAGCGCCGCTAATGCTAGGGTCTTTAGCGGCGTTTTTCGAA
71140803 AAACGCCGCTAATGCTA
66 AAACGCCGCTAATGCTA
* *
71140820 GGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTCAGGGT-TTTAGCGGCGTTTTTGGA
1 GGGGCTTTAGCGGCGTTTTTGCAAAAGCGCCGCTAATGCT-AGGGTCTTTAGCGGCGTTTTTCGA
*
71140884 AAAGCGCCGCTAATGCTA
65 AAAACGCCGCTAATGCTA
* * *
71140902 GGGGATTTAGCGGTGTTTTTGCAAAAGAGCCGCTAA
1 GGGGCTTTAGCGGCGTTTTTGCAAAAGCGCCGCTAA
71140938 AAACATTTTA
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
82 103 0.96
83 4 0.04
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.29
Consensus pattern (82 bp):
GGGGCTTTAGCGGCGTTTTTGCAAAAGCGCCGCTAATGCTAGGGTCTTTAGCGGCGTTTTTCGAA
AAACGCCGCTAATGCTA
Found at i:71141325 original size:14 final size:15
Alignment explanation
Indices: 71141286--71141332 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 15
71141276 TATTTTAAAG
* *
71141286 TTTAGGGAGTATGAA
1 TTTAGGGATTATGGA
*
71141301 TTTAAGGATTATGGA
1 TTTAGGGATTATGGA
71141316 -TTAGGGATTATGG-
1 TTTAGGGATTATGGA
71141329 TTTA
1 TTTA
71141333 AGGGGTGGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.40
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:71141447 original size:15 final size:15
Alignment explanation
Indices: 71141429--71141458 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
71141419 ACTATTTTAA
71141429 TGTTTAGGGATTATG
1 TGTTTAGGGATTATG
71141444 TGTTTAGGGATTATG
1 TGTTTAGGGATTATG
71141459 GATCATGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (15 bp):
TGTTTAGGGATTATG
Found at i:71141501 original size:24 final size:25
Alignment explanation
Indices: 71141472--71141518 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
71141462 CATGGTTTAT
71141472 GGTTTAAGGGTT-GGGGTTTAAGCA
1 GGTTTAAGGGTTAGGGGTTTAAGCA
*
71141496 GGTTTAGGGGTTAGGGGTTTAAG
1 GGTTTAAGGGTTAGGGGTTTAAG
71141519 GTTTATGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.19, C:0.02, G:0.45, T:0.34
Consensus pattern (25 bp):
GGTTTAAGGGTTAGGGGTTTAAGCA
Found at i:71141544 original size:7 final size:7
Alignment explanation
Indices: 71141465--71141623 Score: 74
Period size: 7 Copynumber: 22.0 Consensus size: 7
71141455 TATGGATCAT
*
71141465 GGTTTAT
1 GGTTTAG
71141472 GGTTTAAG
1 GGTTT-AG
*
71141480 GG-TTGG
1 GGTTTAG
71141486 GGTTTAAG
1 GGTTT-AG
71141494 CAGGTTTAG
1 --GGTTTAG
*
71141503 GGGTTAGG
1 GGTTTA-G
*
71141511 GGTTTAA
1 GGTTTAG
*
71141518 GGTTTAT
1 GGTTTAG
* *
71141525 GTTTTAT
1 GGTTTAG
*
71141532 GATTTAG
1 GGTTTAG
71141539 GGTTTAG
1 GGTTTAG
*
71141546 GAGATTAG
1 G-GTTTAG
71141554 GG-TTATG
1 GGTTTA-G
*
71141561 GGTTTAA
1 GGTTTAG
*
71141568 GGTTTAT
1 GGTTTAG
* *
71141575 GTTTTAT
1 GGTTTAG
*
71141582 GATTTAG
1 GGTTTAG
71141589 GG-TTAG
1 GGTTTAG
*
71141595 GAGATTAG
1 G-GTTTAG
71141603 GG-TTAG
1 GGTTTAG
71141609 GGATTTAG
1 GG-TTTAG
71141617 GGTTTAG
1 GGTTTAG
71141624 ATTAATTGGT
Statistics
Matches: 121, Mismatches: 18, Indels: 26
0.73 0.11 0.16
Matches are distributed among these distances:
6 17 0.14
7 67 0.55
8 30 0.25
9 2 0.02
10 5 0.04
ACGTcount: A:0.21, C:0.01, G:0.36, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:71141568 original size:50 final size:48
Alignment explanation
Indices: 71141503--71141622 Score: 195
Period size: 50 Copynumber: 2.4 Consensus size: 48
71141493 GCAGGTTTAG
71141503 GGGTTAGGGGTTTAAGGTTTATGTTTTATGATTTAGGGTTTAGGAGATTA
1 GGGTTA-GGGTTTAAGGTTTATGTTTTATGATTTAGGG-TTAGGAGATTA
71141553 GGGTTATGGGTTTAAGGTTTATGTTTTATGATTTAGGGTTAGGAGATTA
1 GGGTTA-GGGTTTAAGGTTTATGTTTTATGATTTAGGGTTAGGAGATTA
*
71141602 GGGTTAGGGATTTAGGGTTTA
1 GGGTTAGGG-TTTAAGGTTTA
71141623 GATTAATTGG
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
48 3 0.04
49 27 0.40
50 37 0.55
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (48 bp):
GGGTTAGGGTTTAAGGTTTATGTTTTATGATTTAGGGTTAGGAGATTA
Found at i:71145842 original size:43 final size:43
Alignment explanation
Indices: 71145781--71145871 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
71145771 CTTTGAGTCC
* *
71145781 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGTATTATATCTTTT
* * *
71145823 ATTACCAAGGTTTACTTGATTAAGAAAATGTATTGTATTTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGTATTATATCTTTT
71145866 ATTACC
1 ATTACC
71145872 TTGCAATGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGTATTATATCTTTT
Found at i:71146332 original size:43 final size:43
Alignment explanation
Indices: 71146275--71146530 Score: 287
Period size: 43 Copynumber: 5.9 Consensus size: 43
71146265 CAATAGCTGT
* * *
71146275 GTTTGTGACAAAAGCGTCGCTAAAGGTCATGGTCTTTTGCGGC
1 GTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGC
* * *
71146318 ATTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTTTAGTGGC
1 GTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGC
* *
71146361 GTTTGTGACAAAAGTGCCGCTAAAGGTCATGGTCTTTAGCGGC
1 GTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGC
** * * ** ** * *
71146404 ACTTGTGATAAAAACGTCGCTAAAGACCCCATGACCGTTAGCGGT
1 GTTTGTGATAAAAGCGCCGCTAAAG--GTCATGGTCTTTAGCGGC
* *
71146449 GTTTGTGTTAAAAGCGCCGCTAAAGGTCATGGTATTTAGCGGC
1 GTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGC
* * *
71146492 GTTTGTGATAAAAGCACCTCTAAAGGTCACGGTCTTTAG
1 GTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTCTTTAG
71146531 TAACGTTGTC
Statistics
Matches: 171, Mismatches: 40, Indels: 4
0.80 0.19 0.02
Matches are distributed among these distances:
43 139 0.81
45 32 0.19
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
GTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGC
Found at i:71146515 original size:88 final size:86
Alignment explanation
Indices: 71146268--71146516 Score: 300
Period size: 88 Copynumber: 2.9 Consensus size: 86
71146258 GTTTGTGCAA
* * *
71146268 TAGCTGTGTTTGTGACAAAAGCGTCGCTAAAGGTCATGGTCTTTTGCGGCATTTGTGATAAAAGC
1 TAGCGGTGTTTGTGACAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCATTTGTGATAAAAGC
** ** *
71146333 GCCGCTAAAGGTCATGTTCTT
66 GCCGCTAAAGCCCATGACCGT
* * * * *
71146354 TAGTGGCGTTTGTGACAAAAGTGCCGCTAAAGGTCATGGTCTTTAGCGGCACTTGTGATAAAAAC
1 TAGCGGTGTTTGTGACAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCATTTGTGATAAAAGC
*
71146419 GTCGCTAAAGACCCCATGACCGT
66 GCCGCTAAAG--CCCATGACCGT
** * *
71146442 TAGCGGTGTTTGTGTTAAAAGCGCCGCTAAAGGTCATGGTATTTAGCGGCGTTTGTGATAAAAGC
1 TAGCGGTGTTTGTGACAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCATTTGTGATAAAAGC
* *
71146507 ACCTCTAAAG
66 GCCGCTAAAG
71146517 GTCACGGTCT
Statistics
Matches: 135, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
86 66 0.49
88 69 0.51
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (86 bp):
TAGCGGTGTTTGTGACAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCATTTGTGATAAAAGC
GCCGCTAAAGCCCATGACCGT
Found at i:71148676 original size:23 final size:23
Alignment explanation
Indices: 71148632--71148719 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 23
71148622 TTAATGTTCA
**
71148632 CGAACATGTTCATTTAAC-TTAAT
1 CGAACATGTTCA-CGAACATTAAT
*
71148655 CGAACATGTTCACGAACATTAAA
1 CGAACATGTTCACGAACATTAAT
* *
71148678 CAAACATGTTCATGAACATATAAT
1 CGAACATGTTCACGAACAT-TAAT
* *
71148702 TGAACATGTTCACTAACA
1 CGAACATGTTCACGAACA
71148720 ATGTTAATAA
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.06
23 33 0.62
24 17 0.32
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (23 bp):
CGAACATGTTCACGAACATTAAT
Found at i:71154521 original size:45 final size:44
Alignment explanation
Indices: 71154442--71154601 Score: 187
Period size: 45 Copynumber: 3.6 Consensus size: 44
71154432 TCCATAGCGA
* * * *
71154442 CTTTCAACTATGGTCTTAGTC-TTGTTTACTATGATGCCATGACGT
1 CTTTCAACTATGGTCTTAGTCATT-TTTTC-ATGATGGCATAACAT
* * *
71154487 CTTTCAGCTATGGTCTTACTCATTTTTGTCATGATGGAATAACAT
1 CTTTCAACTATGGTCTTAGTCATTTTT-TCATGATGGCATAACAT
* *
71154532 CTTTCAACTATGGTCTTAGTCATTTTCATCATGATGGCAAAACAT
1 CTTTCAACTATGGTCTTAGTCATTTT-TTCATGATGGCATAACAT
*
71154577 CTTTCAACTATGGTTTTAGTCATTT
1 CTTTCAACTATGGTCTTAGTCATTT
71154602 AGGCGTGTAG
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
45 96 0.97
46 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.42
Consensus pattern (44 bp):
CTTTCAACTATGGTCTTAGTCATTTTTTCATGATGGCATAACAT
Found at i:71169279 original size:41 final size:41
Alignment explanation
Indices: 71169033--71169271 Score: 271
Period size: 41 Copynumber: 5.8 Consensus size: 41
71169023 CTTGAGATAA
* * *
71169033 TATATCAGGCTTTGTGCCTAGCAGGCTTCCTACCGTTGTAT
1 TATATCAGGCTTTGTGCCTAGCAGGCTTCGTGCCGGTGTAT
* * * * *
71169074 TATATCAAGCTTTGTGCCTAGTAAGCTTCATGCCAGTGTAT
1 TATATCAGGCTTTGTGCCTAGCAGGCTTCGTGCCGGTGTAT
* *
71169115 TATATGAGGCTTTGTGCCTAGCAGGCTTCGTTCCGGTGTAT
1 TATATCAGGCTTTGTGCCTAGCAGGCTTCGTGCCGGTGTAT
** * *
71169156 TATATCAAACTTTGTGCCTAGCAGGCTTTGTGTCGGTGTAT
1 TATATCAGGCTTTGTGCCTAGCAGGCTTCGTGCCGGTGTAT
* * * * * *
71169197 TATATTAGGCTTTGTGCTTAGCAAGCTTCGCGCTGGTGTGT
1 TATATCAGGCTTTGTGCCTAGCAGGCTTCGTGCCGGTGTAT
* * *
71169238 TATATCAGGCTTTGAGCCTAGCAGTCTTCATGCC
1 TATATCAGGCTTTGTGCCTAGCAGGCTTCGTGCC
71169272 AATGTGTTGT
Statistics
Matches: 160, Mismatches: 38, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 160 1.00
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (41 bp):
TATATCAGGCTTTGTGCCTAGCAGGCTTCGTGCCGGTGTAT
Found at i:71171675 original size:36 final size:36
Alignment explanation
Indices: 71171594--71171693 Score: 150
Period size: 34 Copynumber: 2.8 Consensus size: 36
71171584 TTGATTTAAA
* * *
71171594 TATAGATATATACATTGCCGAATTGATTTGTATATG
1 TATACATATATATATTGACGAATTGATTTGTATATG
71171630 TATAC--ATATATATTGACGAATTGATTTGTATATG
1 TATACATATATATATTGACGAATTGATTTGTATATG
*
71171664 TATACATATATATATTGTCGAATTGATTTG
1 TATACATATATATATTGACGAATTGATTTG
71171694 AGCATTGGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
34 32 0.55
36 26 0.45
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (36 bp):
TATACATATATATATTGACGAATTGATTTGTATATG
Found at i:71171860 original size:41 final size:42
Alignment explanation
Indices: 71171815--71171893 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 42
71171805 GAGGTGTGAT
* *
71171815 TTCGTGTAAGACCATGTCTGGGACATTGGCATC-ATATATGA
1 TTCGTATAAGACCATGTCTGGGACAGTGGCATCGATATATGA
* *
71171856 TTCGTATAAGACCCTGTCTGGGATAGTGGCATCGATAT
1 TTCGTATAAGACCATGTCTGGGACAGTGGCATCGATAT
71171894 GCATTAACAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 29 0.88
42 4 0.12
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTCGTATAAGACCATGTCTGGGACAGTGGCATCGATATATGA
Found at i:71178708 original size:34 final size:34
Alignment explanation
Indices: 71178630--71178734 Score: 126
Period size: 34 Copynumber: 3.1 Consensus size: 34
71178620 ATATGTTTTT
* **
71178630 TATATTGCCGAATTGATTTAAATATAG-AT--ATA
1 TATATTGACGAATTGATTTGTATAT-GTATACATA
* * *
71178662 TACATTGTCGAATTGATTTGTATGTGTATACATA
1 TATATTGACGAATTGATTTGTATATGTATACATA
71178696 TATATTGACGAATTGATTTGTATATGTATACATA
1 TATATTGACGAATTGATTTGTATATGTATACATA
71178730 TATAT
1 TATAT
71178735 ATATATTGCC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
31 1 0.02
32 22 0.35
34 39 0.63
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.44
Consensus pattern (34 bp):
TATATTGACGAATTGATTTGTATATGTATACATA
Found at i:71178947 original size:41 final size:42
Alignment explanation
Indices: 71178876--71178954 Score: 99
Period size: 41 Copynumber: 1.9 Consensus size: 42
71178866 GAGGTGTGAT
* *
71178876 TTCGTATAAGACCATGTCTGGGACATTGGCATC-ATATATGA
1 TTCGTATAAGACCATGTCTCGGACAGTGGCATCGATATATGA
* *
71178917 TTCGTATAAGATCC-TGTTTCGGATAGTGGCATCGATAT
1 TTCGTATAAGA-CCATGTCTCGGACAGTGGCATCGATAT
71178955 GCATTAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 26 0.81
42 6 0.19
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (42 bp):
TTCGTATAAGACCATGTCTCGGACAGTGGCATCGATATATGA
Found at i:71180781 original size:32 final size:31
Alignment explanation
Indices: 71180740--71180825 Score: 88
Period size: 33 Copynumber: 2.7 Consensus size: 31
71180730 GAAATATTTT
*
71180740 AATATAATTTAATATAAAATATTTAATTTCAA
1 AATATAATTTAATATAAAATATTTAATAT-AA
71180772 AATATAATTTTAA-ATAAAAATATTTTAATATAA
1 AATATAA-TTTAATAT-AAAATA-TTTAATATAA
*
71180805 AA-ATAATTATATTA-AAAATAT
1 AATATAATT-TAATATAAAATAT
71180826 AATTAAATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
30 1 0.02
31 8 0.17
32 15 0.32
33 16 0.34
34 7 0.15
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (31 bp):
AATATAATTTAATATAAAATATTTAATATAA
Found at i:71180798 original size:15 final size:16
Alignment explanation
Indices: 71180747--71180809 Score: 69
Period size: 16 Copynumber: 3.9 Consensus size: 16
71180737 TTTAATATAA
71180747 TTTAATAT-AAAATA-
1 TTTAATATAAAAATAT
*
71180761 TTTAATTTCAAAATATAAT
1 TTTAATAT-AAAA-AT-AT
71180780 TTTAA-ATAAAAATAT
1 TTTAATATAAAAATAT
71180795 TTTAATATAAAAATA
1 TTTAATATAAAAATA
71180810 ATTATATTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
14 7 0.17
15 7 0.17
16 14 0.34
17 6 0.15
18 2 0.05
19 5 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTAATATAAAAATAT
Found at i:71180808 original size:34 final size:32
Alignment explanation
Indices: 71180740--71180809 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 32
71180730 GAAATATTTT
* *
71180740 AATATAATTTAATATAAAATATTTAATTTCAA
1 AATATAATTTAATATAAAATATTTAATATAAA
71180772 AATATAATTTTAA-ATAAAAATATTTTAATATAAA
1 AATATAA-TTTAATAT-AAAATA-TTTAATATAAA
71180806 AATA
1 AATA
71180810 ATTATATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 9 0.27
33 11 0.33
34 13 0.39
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (32 bp):
AATATAATTTAATATAAAATATTTAATATAAA
Found at i:71180816 original size:14 final size:16
Alignment explanation
Indices: 71180748--71180831 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 16
71180738 TTAATATAAT
71180748 TTAATAT-AAAATAT-
1 TTAATATAAAAATATA
* *
71180762 TTAATTTCAAAATATAATT
1 TTAATAT-AAAA-AT-ATA
*
71180781 TTAA-ATAAAAATATT
1 TTAATATAAAAATATA
71180796 TTAATATAAAAATA-A
1 TTAATATAAAAATATA
71180811 TT-ATATTAAAAATATAA
1 TTAATA-TAAAAATAT-A
71180828 TTAA
1 TTAA
71180832 ATTATATATT
Statistics
Matches: 57, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
14 9 0.16
15 17 0.30
16 14 0.25
17 9 0.16
18 4 0.07
19 4 0.07
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAATATAAAAATATA
Found at i:71197199 original size:41 final size:43
Alignment explanation
Indices: 71197152--71197305 Score: 122
Period size: 43 Copynumber: 3.6 Consensus size: 43
71197142 AACCGTTACT
* *
71197152 CGGTGGAATCAGCACTTAGCAACCACC-TT-ATATTC-AGTGATA
1 CGGTGGAATCAGCACTTAGCAACC-CCTTTCACAATCAAG-GATA
* *
71197194 C-GTGGAATCAGCACATAACAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCCCTTTCACAATCAAGGATA
* * * * ** *
71197236 CGGTGAAATCAGCACTTAGCAAAACACCTTT-AGAATTAATAATT
1 CGGTGGAATCAGCACTTAGC--AACCCCTTTCACAATCAAGGATA
*
71197280 CAG-GGAATCAGCACTTAGCAACCCCT
1 CGGTGGAATCAGCACTTAGCAACCCCT
71197306 CGGGGAATCT
Statistics
Matches: 90, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
40 2 0.02
41 28 0.31
42 10 0.11
43 32 0.36
44 10 0.11
45 8 0.09
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCCCTTTCACAATCAAGGATA
Found at i:71197311 original size:26 final size:26
Alignment explanation
Indices: 71197282--71197331 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
71197272 TAATAATTCA
71197282 GGGAATCAGCACTTAGCAACCCCTCG
1 GGGAATCAGCACTTAGCAACCCCTCG
*
71197308 GGGAATCTGCACTTAGCAACCCCT
1 GGGAATCAGCACTTAGCAACCCCT
71197332 TTTTGATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.34, G:0.22, T:0.18
Consensus pattern (26 bp):
GGGAATCAGCACTTAGCAACCCCTCG
Found at i:71197363 original size:41 final size:41
Alignment explanation
Indices: 71197305--71197455 Score: 216
Period size: 41 Copynumber: 3.7 Consensus size: 41
71197295 TAGCAACCCC
71197305 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
** * *
71197346 TCGGGGAATCTATACTTAGCAACCCCTTTTTGATCAGTGAT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
*
71197387 TCGGGGAATCTGCACTTAGCAACACCTTTTTGATCAGTTA-TT
1 TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAG--AGTT
*
71197429 T-GGGGAATTTGCACTTAGCAACCCCTT
1 TCGGGGAATCTGCACTTAGCAACCCCTT
71197456 ACATTCAATG
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
41 95 0.98
42 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (41 bp):
TCGGGGAATCTGCACTTAGCAACCCCTTTTTGATCAGAGTT
Found at i:71199543 original size:2 final size:2
Alignment explanation
Indices: 71199536--71199568 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
71199526 GTTAAAAAGG
71199536 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71199569 ACACTTGCGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71209131 original size:16 final size:16
Alignment explanation
Indices: 71209106--71209138 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
71209096 TATAACTTTT
71209106 TTTTTCAATTTTTATA
1 TTTTTCAATTTTTATA
*
71209122 TTTTTGAATTTTTATA
1 TTTTTCAATTTTTATA
71209138 T
1 T
71209139 ATTATTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTTTCAATTTTTATA
Found at i:71212082 original size:22 final size:22
Alignment explanation
Indices: 71212057--71212098 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
71212047 AAAGTCCAAT
71212057 AAACCAGCAACAATAACACAAC
1 AAACCAGCAACAATAACACAAC
** *
71212079 AAACTGGTAACAATAACACA
1 AAACCAGCAACAATAACACA
71212099 TAAGTTCAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.57, C:0.26, G:0.07, T:0.10
Consensus pattern (22 bp):
AAACCAGCAACAATAACACAAC
Found at i:71215175 original size:47 final size:47
Alignment explanation
Indices: 71215112--71215347 Score: 400
Period size: 47 Copynumber: 5.0 Consensus size: 47
71215102 ATGATAGTAT
71215112 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
71215159 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
71215206 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
71215253 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * *
71215300 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
71215347 G
1 G
71215348 TCCCGAAGGG
Statistics
Matches: 179, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 179 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:71221473 original size:27 final size:27
Alignment explanation
Indices: 71221429--71221481 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
71221419 CCTCAAACTT
* *
71221429 ACCCGTGTTTACTGTCCTAGCAGACTA
1 ACCCATGTTTACTATCCTAGCAGACTA
* *
71221456 ACCCATGTTTATTATCCTGGCAGACT
1 ACCCATGTTTACTATCCTAGCAGACT
71221482 TAGTCTATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (27 bp):
ACCCATGTTTACTATCCTAGCAGACTA
Found at i:71233153 original size:26 final size:26
Alignment explanation
Indices: 71233079--71233164 Score: 111
Period size: 26 Copynumber: 3.3 Consensus size: 26
71233069 ACAAAAAATG
* *
71233079 GGCCCACACACTCGTGT-GGCCACAC
1 GGCCTACACGCTCGTGTGGGCCACAC
* * *
71233104 GGCCCACACGCTCGTGTGGCCCACAT
1 GGCCTACACGCTCGTGTGGGCCACAC
*
71233130 GTCCTACACGCTCGTGTGGGCCACAC
1 GGCCTACACGCTCGTGTGGGCCACAC
71233156 GGCCTACAC
1 GGCCTACAC
71233165 AAACCCGTGT
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 16 0.31
26 36 0.69
ACGTcount: A:0.17, C:0.42, G:0.26, T:0.15
Consensus pattern (26 bp):
GGCCTACACGCTCGTGTGGGCCACAC
Found at i:71235682 original size:5 final size:5
Alignment explanation
Indices: 71235672--71235696 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
71235662 TTTAACTAAG
71235672 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
71235697 GTTTCAATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:71243479 original size:13 final size:13
Alignment explanation
Indices: 71243426--71243480 Score: 56
Period size: 13 Copynumber: 4.2 Consensus size: 13
71243416 GTATAAACAC
*
71243426 TTCATATAATCAT
1 TTCATATAACCAT
* *
71243439 TTCATATATCTAT
1 TTCATATAACCAT
*
71243452 TTCCATATAAACAT
1 TT-CATATAACCAT
*
71243466 TTCATATTACCAT
1 TTCATATAACCAT
71243479 TT
1 TT
71243481 TTGTTTACTC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
13 23 0.70
14 10 0.30
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (13 bp):
TTCATATAACCAT
Found at i:71243480 original size:27 final size:27
Alignment explanation
Indices: 71243428--71243480 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
71243418 ATAAACACTT
* *
71243428 CATATAATCATTTCATATATCTATTTC
1 CATATAAACATTTCATATATCCATTTC
71243455 CATATAAACATTTCATAT-TACCATTT
1 CATATAAACATTTCATATAT-CCATTT
71243481 TTGTTTACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.36, C:0.19, G:0.00, T:0.45
Consensus pattern (27 bp):
CATATAAACATTTCATATATCCATTTC
Found at i:71252244 original size:39 final size:40
Alignment explanation
Indices: 71252149--71252410 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
71252139 TTGAATGATG
*
71252149 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
71252187 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
71252228 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
71252267 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
71252306 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
71252345 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
71252384 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
71252411 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Done.