Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 231 of 313
Found at i:71265444 original size:27 final size:27
Alignment explanation
Indices: 71265414--71265466 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
71265404 ACAAATAAAA
71265414 TTTTAAAAA-TATATAAAAAAATATTTT
1 TTTTAAAAAGTATA-AAAAAAATATTTT
*
71265441 TTTTAAAAAGTGTAAAAAAAATATTT
1 TTTTAAAAAGTATAAAAAAAATATTT
71265467 AAACAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 21 0.88
28 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (27 bp):
TTTTAAAAAGTATAAAAAAAATATTTT
Found at i:71265606 original size:11 final size:11
Alignment explanation
Indices: 71265573--71265606 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
71265563 AAATTTATTT
71265573 AAAATTTTTAA
1 AAAATTTTTAA
71265584 AAATATTTTTAA
1 AAA-ATTTTTAA
*
71265596 AAAATTATTAA
1 AAAATTTTTAA
71265607 CAAACTCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AAAATTTTTAA
Found at i:71266322 original size:34 final size:35
Alignment explanation
Indices: 71266264--71266330 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
71266254 CGAATACCAG
71266264 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
71266299 AAAATATTTTCCAG-AAATCATTTTATAGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
71266331 TATTTTACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:71267551 original size:22 final size:23
Alignment explanation
Indices: 71267509--71267552 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
71267499 TTTTTTATAA
*
71267509 AAAATAGATTAAAAATTTTAATC
1 AAAATAGATTAAAAATGTTAATC
*
71267532 AAAATAG-TTAAAGATGTTAAT
1 AAAATAGATTAAAAATGTTAAT
71267553 TATTTGGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (23 bp):
AAAATAGATTAAAAATGTTAATC
Found at i:71269350 original size:24 final size:24
Alignment explanation
Indices: 71269318--71269375 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
71269308 ATCATCTCAT
* *
71269318 ATTAACTCATACACGCATTATATA
1 ATTACCTCATACAAGCATTATATA
*
71269342 CTTACCTCATACAAGCATTATATA
1 ATTACCTCATACAAGCATTATATA
71269366 ATTACCTCAT
1 ATTACCTCAT
71269376 GACTAATCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.34
Consensus pattern (24 bp):
ATTACCTCATACAAGCATTATATA
Found at i:71270970 original size:43 final size:41
Alignment explanation
Indices: 71270923--71271145 Score: 146
Period size: 42 Copynumber: 5.2 Consensus size: 41
71270913 GGTTTAATAA
*
71270923 ATGATGCACTGTGTGTGCCAGAATAATTTCTTCGGTATATCTG
1 ATGATGCACT-TGTGTGCCAGAATAATTTCTTCGGT-TATCCG
*** * * *
71270966 ATGATGCACTTACATGCCAGTATATTTTCTTCGG-TACGTCCA
1 ATGATGCACTTGTGTGCCAGAATAATTTCTTCGGTTA--TCCG
** * *
71271008 ATGATGCACTTACGTGCCA-ACATAATTACTTCAGTTAATCCG
1 ATGATGCACTTGTGTGCCAGA-ATAATTTCTTCGGTT-ATCCG
* * * * *
71271050 ATGATGCACTATGTGTGCAAGTATAATTTCTACAGCTTATCTG
1 ATGATGCACT-TGTGTGCCAGAATAATTTCTTC-GGTTATCCG
* ** *
71271093 ATGGTGCACTATGTGTGCCCCAAT-ATTTCCTTCGATTTATCCG
1 ATGATGCACT-TGTGTGCCAGAATAATTT-CTTCG-GTTATCCG
71271136 ATGATGCACT
1 ATGATGCACT
71271146 ACAGTGCCAG
Statistics
Matches: 139, Mismatches: 31, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
40 2 0.01
42 67 0.48
43 67 0.48
44 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.35
Consensus pattern (41 bp):
ATGATGCACTTGTGTGCCAGAATAATTTCTTCGGTTATCCG
Found at i:71275372 original size:24 final size:24
Alignment explanation
Indices: 71275345--71275396 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
71275335 TTAGTAAGTC
*
71275345 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
71275369 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
71275393 AAAT
1 AAAT
71275397 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:71277341 original size:24 final size:24
Alignment explanation
Indices: 71277314--71277365 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
71277304 TTAGTAAGTC
*
71277314 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
71277338 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
71277362 AAAT
1 AAAT
71277366 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:71278165 original size:95 final size:97
Alignment explanation
Indices: 71278038--71278227 Score: 303
Period size: 95 Copynumber: 2.0 Consensus size: 97
71278028 TCATACTTAC
* *
71278038 TTTCTTCTCTAGTTGGATATTTAATTGGACATTGGAAACCCTTATGATCTTGTGAACTACACTAA
1 TTTCTTCTCTAGTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTGTGAACTACACCAA
* *
71278103 TAACATTTCATAAAAGGTGATAGCTCAATCGT
66 TAACATTGCACAAAAGGTGATAGCTCAATCGT
* *
71278135 TTTC-TCTCTATTTAGAT-TTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACCAA
1 TTTCTTCTCTAGTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTGTGAACTACACCAA
*
71278198 TAACATTGCACAAAATGTGATAGCTCAATC
66 TAACATTGCACAAAAGGTGATAGCTCAATC
71278228 CTATTCCTCC
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
95 71 0.83
96 11 0.13
97 4 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (97 bp):
TTTCTTCTCTAGTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTGTGAACTACACCAA
TAACATTGCACAAAAGGTGATAGCTCAATCGT
Found at i:71280056 original size:24 final size:25
Alignment explanation
Indices: 71280012--71280059 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
71280002 AAACAACTCT
*
71280012 AAAAGAAACTTAAAAGTAATTCTTG
1 AAAAGAAACTCAAAAGTAATTCTTG
71280037 AAAA-AAACTCAAAGAG-AATTCTT
1 AAAAGAAACTCAAA-AGTAATTCTT
71280060 ATCAACTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.25
Consensus pattern (25 bp):
AAAAGAAACTCAAAAGTAATTCTTG
Found at i:71282894 original size:30 final size:29
Alignment explanation
Indices: 71282860--71282924 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
71282850 TAATCCACCA
71282860 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
71282890 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
71282920 CCCAA
1 CCCAA
71282925 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:71282898 original size:31 final size:30
Alignment explanation
Indices: 71282867--71282924 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
71282857 CCACCCAACT
71282867 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
71282897 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
71282925 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:71289940 original size:103 final size:104
Alignment explanation
Indices: 71289761--71290025 Score: 424
Period size: 103 Copynumber: 2.6 Consensus size: 104
71289751 AACCGTTATT
* * * *
71289761 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
71289826 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
*
71289864 GGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
71289929 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
71289968 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
71290026 TTATGTACAA
Statistics
Matches: 149, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:71290387 original size:30 final size:29
Alignment explanation
Indices: 71290353--71290417 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
71290343 TAATCCACCA
71290353 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
71290383 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
71290413 CCCAA
1 CCCAA
71290418 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:71290391 original size:31 final size:30
Alignment explanation
Indices: 71290360--71290417 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
71290350 CCACCCAACT
71290360 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
71290390 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
71290418 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:71291881 original size:19 final size:20
Alignment explanation
Indices: 71291846--71291883 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
71291836 TGGCACCTTG
71291846 TATGGTACATAGGTGATGAA
1 TATGGTACATAGGTGATGAA
71291866 TATGGTACAT-GGTGATGA
1 TATGGTACATAGGTGATGA
71291884 TTTTGGATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.32
Consensus pattern (20 bp):
TATGGTACATAGGTGATGAA
Found at i:71294180 original size:29 final size:29
Alignment explanation
Indices: 71294138--71294196 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
71294128 TGAAGCGATG
71294138 TATTATGCAATTTTTTCAACTTTCTTCTC
1 TATTATGCAATTTTTTCAACTTTCTTCTC
71294167 TATTATGCAATTTTTTCAACTTTCTTCTC
1 TATTATGCAATTTTTTCAACTTTCTTCTC
71294196 T
1 T
71294197 CAGTTAAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.56
Consensus pattern (29 bp):
TATTATGCAATTTTTTCAACTTTCTTCTC
Found at i:71294231 original size:24 final size:24
Alignment explanation
Indices: 71294197--71294257 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
71294187 TTTCTTCTCT
71294197 CAGTTAAACTCTGTTTTAGTTTCC
1 CAGTTAAACTCTGTTTTAGTTTCC
*
71294221 CGGTTAAACTCTGTTTTAGTTTCC
1 CAGTTAAACTCTGTTTTAGTTTCC
*
71294245 CACTTAAACTCTG
1 CAGTTAAACTCTG
71294258 ATTCGTGTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (24 bp):
CAGTTAAACTCTGTTTTAGTTTCC
Found at i:71297395 original size:18 final size:17
Alignment explanation
Indices: 71297363--71297404 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
71297353 TATTCTCTTT
71297363 TATTCTTTTTAATTTCT-A
1 TATT-TTTTTAATTT-TAA
71297381 TATTTTTTTATATTTTAA
1 TATTTTTTTA-ATTTTAA
71297399 TATTTT
1 TATTTT
71297405 AATGATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTTTTTAATTTTAA
Found at i:71300130 original size:43 final size:43
Alignment explanation
Indices: 71300095--71300289 Score: 241
Period size: 43 Copynumber: 4.5 Consensus size: 43
71300085 TTTATCGGTT
* *
71300095 CTTCTTCCACAAATGCCGCTAAAGACCAAGACCTTTAGCGACG
1 CTTCTTCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCG
* * *
71300138 CTTCTCCCACAAACGCCGCTAAAGACCAAGCCCTTTAGCAGCG
1 CTTCTTCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCG
* *
71300181 CTT-TTCCTACAAACACCGCTAAAGACCAAGACCTTTAGAGGCG
1 CTTCTTCC-ACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCG
* * *
71300224 CTT-TTATCACAAACGCCGCTATAGACCATGACCTTTAGCGGCG
1 CTTCTT-CCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCG
** *
71300267 CTTCTAACAAAAACGCCGCTAAA
1 CTTCTTCCACAAACGCCGCTAAA
71300290 AACATAATCT
Statistics
Matches: 130, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
42 3 0.02
43 125 0.96
44 2 0.02
ACGTcount: A:0.31, C:0.33, G:0.16, T:0.21
Consensus pattern (43 bp):
CTTCTTCCACAAACGCCGCTAAAGACCAAGACCTTTAGCGGCG
Found at i:71305326 original size:41 final size:41
Alignment explanation
Indices: 71305231--71305486 Score: 390
Period size: 41 Copynumber: 6.3 Consensus size: 41
71305221 GCTTCACCGT
71305231 TAAAGACCCGAGCATTAGCGGCGCTT-TTTCAAAAA-GCCGC
1 TAAAGACCCGAGCATTAGCGGCGCTTCTTT-AAAAACGCCGC
* *
71305271 TAAAGGCCCGAGCATTTGCGGCGCTTCTTTAAAAACGCCGC
1 TAAAGACCCGAGCATTAGCGGCGCTTCTTTAAAAACGCCGC
* * * *
71305312 TAAAGGCCCAAGCATTAGCGGTGCCTCTTTAAAAACGCCGC
1 TAAAGACCCGAGCATTAGCGGCGCTTCTTTAAAAACGCCGC
*
71305353 TAAAGACCCGAGCATTAGCGGCGCTTCTTTAAAAACGTCGC
1 TAAAGACCCGAGCATTAGCGGCGCTTCTTTAAAAACGCCGC
* *
71305394 TAAAGACCAGAGCATTAGCGGCGCTTCTTTAAAAACACCGC
1 TAAAGACCCGAGCATTAGCGGCGCTTCTTTAAAAACGCCGC
*
71305435 TAAAGACCCGAGCATTAGCGGCGCTTCCTTAAAAACGCCGC
1 TAAAGACCCGAGCATTAGCGGCGCTTCTTTAAAAACGCCGC
*
71305476 TAAAGCCCCGA
1 TAAAGACCCGA
71305487 AAACTGAAAA
Statistics
Matches: 196, Mismatches: 18, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
40 29 0.15
41 167 0.85
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.20
Consensus pattern (41 bp):
TAAAGACCCGAGCATTAGCGGCGCTTCTTTAAAAACGCCGC
Found at i:71309558 original size:27 final size:27
Alignment explanation
Indices: 71309528--71309597 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
71309518 TTCAAACCAA
*
71309528 CTCGAATATCACTTGG-TTCAAAACTTG
1 CTCGAATACCACTTGGCTT-AAAACTTG
* *
71309555 CTCGGATACCATTTGGCTTAAAACTTGG
1 CTCGAATACCACTTGGCTTAAAACTT-G
* *
71309583 CTTGGATACCACTTG
1 CTCGAATACCACTTG
71309598 TCACGGGGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
CTCGAATACCACTTGGCTTAAAACTTG
Found at i:71326625 original size:6 final size:6
Alignment explanation
Indices: 71326616--71326649 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
71326606 TTCAATCAAA
* *
71326616 AAAATC AAAATT AAAATC AAAATC AAAAAC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
71326650 AAGAAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:71326698 original size:8 final size:8
Alignment explanation
Indices: 71326679--71326717 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
71326669 AACTAAGTGA
71326679 AAAAAATG
1 AAAAAATG
71326687 -AAAAATG
1 AAAAAATG
71326694 AAAAAATG
1 AAAAAATG
* *
71326702 AAAAAGTA
1 AAAAAATG
71326710 AAAAAATG
1 AAAAAATG
71326718 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (8 bp):
AAAAAATG
Found at i:71326699 original size:15 final size:16
Alignment explanation
Indices: 71326673--71326717 Score: 65
Period size: 15 Copynumber: 2.8 Consensus size: 16
71326663 AAAGAAAACT
71326673 AAGTGAAAAAAATGAAA
1 AAGT-AAAAAAATGAAA
*
71326690 AA-TGAAAAAATGAAA
1 AAGTAAAAAAATGAAA
71326705 AAGTAAAAAAATG
1 AAGTAAAAAAATG
71326718 GAGAGGCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 13 0.52
16 10 0.40
17 2 0.08
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13
Consensus pattern (16 bp):
AAGTAAAAAAATGAAA
Found at i:71331943 original size:100 final size:98
Alignment explanation
Indices: 71331714--71331953 Score: 311
Period size: 98 Copynumber: 2.4 Consensus size: 98
71331704 TTTCTTGTAT
* * * * * * *
71331714 TGCCAATGCCATATCCCATATATGGTCTTACATGAGAGT-TCTCATATAGGTGCCCATGCCATGT
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGA-TCTCTCATATAGGTGCCAACGCCATGT
71331778 CCCAGACATGGTCTTACGGGACCTCTCATCTCGA
65 CCCAGACATGGTCTTACGGGACCTCTCATCTCGA
* * *
71331812 TGTCAACGCCATGTCCCAGAAATGGTCTTACATGGGATCTCTCATCTCGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGATCTCTCATATAGGTGCCAACGCCATGTC
* *
71331877 CCAGACATGGTCTTACATGGGACCTCTTATCTCGG
66 CCAGACATGGTCTTAC--GGGACCTCTCATCTCGA
** *
71331912 TGCCAACGCCATGTCTTAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGATCTCT
71331954 TTACTCAAAT
Statistics
Matches: 123, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
97 1 0.01
98 69 0.56
100 53 0.43
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (98 bp):
TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGATCTCTCATATAGGTGCCAACGCCATGTC
CCAGACATGGTCTTACGGGACCTCTCATCTCGA
Found at i:71331954 original size:50 final size:50
Alignment explanation
Indices: 71331665--71331953 Score: 307
Period size: 50 Copynumber: 5.8 Consensus size: 50
71331655 GAATATAACA
* * * * * * * **
71331665 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGT-AT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGG
* * * * * * *
71331714 TGCCAATGCCATATCCCATATATGGTCTTACATGAGAGT-TCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-TCTCTCATCTCGG
* * * *
71331764 TGCCCATGCCATGTCCCAGACATGGTCTTAC--GGGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGG
* *
71331812 TGTCAACGCCATGTCCCAGAAATGGTCTTACATGGGATCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGG
* *
71331862 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGG
**
71331912 TGCCAACGCCATGTCTTAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
71331954 TTACTCAAAT
Statistics
Matches: 201, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
48 38 0.19
49 35 0.17
50 128 0.64
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTCGG
Found at i:71346545 original size:50 final size:50
Alignment explanation
Indices: 71346439--71346682 Score: 245
Period size: 50 Copynumber: 4.8 Consensus size: 50
71346429 GGGAATGAGA
* * **
71346439 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCTTTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC---ATCGA-G--ATGAGAAC
* * * **
71346495 TTCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAAC
* * * *
71346545 TCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCATCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAAC
* * * *
71346595 TCCCATGTAAGACCATATCTAGGACATGGCATTGGCATCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAAC
* * * *
71346645 TACCATGTAAGACCATATCTGGGATATGGCATTGGCAT
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCAT
71346683 GTTACTATCA
Statistics
Matches: 165, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
50 128 0.78
52 1 0.01
53 3 0.02
56 33 0.20
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATGAGAAC
Found at i:71346900 original size:12 final size:12
Alignment explanation
Indices: 71346883--71346921 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
71346873 ATGAGTTATT
71346883 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
71346895 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
71346907 TAAGAAAGTAAG
1 TAAGTAAGCAAG
71346919 TAA
1 TAA
71346922 AGAAGAAGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:71349994 original size:39 final size:39
Alignment explanation
Indices: 71349948--71350118 Score: 195
Period size: 39 Copynumber: 4.3 Consensus size: 39
71349938 GGACTAAGAT
*
71349948 CCGAAGGCATTTGTGCGAGATACAAATTCCGAGTTAAGC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
* *
71349987 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
* * *
71350026 CCGAAGGCATTTGTGCGAGTTATTAAA-TCTGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAG-C
* * *
71350066 CCGAAGGCATTTGTGCGAGTTACTATAA--CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-A-AATTCCGGGTTAAG-C
71350106 CCGAAGGCATTTG
1 CCGAAGGCATTTG
71350119 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 66 0.57
40 48 0.41
41 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
Found at i:71350070 original size:79 final size:81
Alignment explanation
Indices: 71349902--71350118 Score: 252
Period size: 79 Copynumber: 2.7 Consensus size: 81
71349892 CTGTCCGGGC
* * *
71349902 TAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCATTTGTGC
71349964 GAGATACAAATTCCGAGT
64 GAGATACAAATTCCGAGT
71349982 TAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA
* * * *
71350044 GTTATTAAA-TCTGGGT
66 GATA-CAAATTCCGAGT
* * * *
71350060 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATTTG
71350119 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
78 32 0.27
79 57 0.47
80 30 0.25
81 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (81 bp):
TAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA
GATACAAATTCCGAGT
Found at i:71350080 original size:40 final size:39
Alignment explanation
Indices: 71349895--71350118 Score: 224
Period size: 40 Copynumber: 5.6 Consensus size: 39
71349885 TTGAATGCTG
*
71349895 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
71349935 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAA
* * *
71349974 TTCCGAGTTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* *
71350014 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
71350053 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-AA
*
71350094 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
71350119 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 67 0.42
40 79 0.50
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:71350140 original size:79 final size:78
Alignment explanation
Indices: 71349902--71350151 Score: 201
Period size: 79 Copynumber: 3.2 Consensus size: 78
71349892 CTGTCCGGGC
* * * **
71349902 TAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCATTTGAAC
71349964 GAGAT-AC-AAATTCCGAGT
62 GAG-TGACTAAA-TCCG-GT
* **
71349982 TAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
* * *
71350046 TATTAAATCTGGGT
66 GACTAAATC-CGGT
* *
71350060 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA
*
71350124 G-GAGCTATATCCGGT
64 GTGA-CTAAATCCGGT
* *
71350139 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
71350152 TACGTGATTT
Statistics
Matches: 143, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
77 1 0.01
78 30 0.21
79 72 0.50
80 39 0.27
81 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
GACTAAATCCGGT
Found at i:71351968 original size:14 final size:14
Alignment explanation
Indices: 71351945--71351976 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
71351935 TCCATCCTAG
71351945 AAAA-ATAAATTAC
1 AAAATATAAATTAC
71351958 AAAATATAAATTAC
1 AAAATATAAATTAC
71351972 AAAAT
1 AAAAT
71351977 TCACCTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (14 bp):
AAAATATAAATTAC
Found at i:71353514 original size:56 final size:58
Alignment explanation
Indices: 71353437--71353556 Score: 154
Period size: 57 Copynumber: 2.1 Consensus size: 58
71353427 TTTCATTTTT
* * *
71353437 ATTTTCATTTTCATCTTGGAG-AAACCACATTCATTTCCAAATGATT-CCATTTCTCC
1 ATTTTCATTTTCATCTTGGAGAAAACCACAATCATTTCCAAATAATTCCCATTTCCCC
* * * * *
71353493 ATTTTCATTTTTATTTTGGAGAAAACCATAATCATTTTCAATTAATTCCCATTTCCCC
1 ATTTTCATTTTCATCTTGGAGAAAACCACAATCATTTCCAAATAATTCCCATTTCCCC
71353551 ATTTTC
1 ATTTTC
71353557 TCCATTTCTA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
56 19 0.35
57 20 0.37
58 15 0.28
ACGTcount: A:0.28, C:0.23, G:0.06, T:0.44
Consensus pattern (58 bp):
ATTTTCATTTTCATCTTGGAGAAAACCACAATCATTTCCAAATAATTCCCATTTCCCC
Found at i:71354700 original size:54 final size:53
Alignment explanation
Indices: 71354566--71354700 Score: 144
Period size: 54 Copynumber: 2.5 Consensus size: 53
71354556 GTGTCTTAGC
* * * *
71354566 CCGTGTAACTCACTGAGTTGAGCCACATGGTCGTGTCGCAGGCCATGTGCCAGA
1 CCGTGTAACTCACTGAGTTGA-ACACAAGGCCGTGTCGCAAGCCATGTGCCAGA
* * * * * *
71354620 CCATGTAGCTCTCTGACTTGTGACACAAGGCCGTGTCGCAAGCCATGTGCTAGA
1 CCGTGTAACTCACTGAGTTG-AACACAAGGCCGTGTCGCAAGCCATGTGCCAGA
*
71354674 CCGTGTAACACACTGAGTTAGAACACA
1 CCGTGTAACTCACTGAGTT-GAACACA
71354701 TGGTCGTGCC
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
54 62 0.98
55 1 0.02
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (53 bp):
CCGTGTAACTCACTGAGTTGAACACAAGGCCGTGTCGCAAGCCATGTGCCAGA
Found at i:71355778 original size:73 final size:72
Alignment explanation
Indices: 71355656--71355843 Score: 204
Period size: 73 Copynumber: 2.6 Consensus size: 72
71355646 AGTACACAAG
* *
71355656 TAATCCAACCGAAAACGC--CAGTTGCTCATAAGAGTTAATCCACTCGATAACATGCCAATCGCT
1 TAATCCAACC-AAAACACATCAGTTGCTCATAAGAGCTAATCCACTCGATAACATGCCAAT-GCT
71355719 CATAAGAAC
64 CATAAGAAC
* * *
71355728 TAATCCAACCAAAACACATCAGTCGCTCATAAGAGCTAATCCAC-CTGATAATATGTCAATGCTC
1 TAATCCAACCAAAACACATCAGTTGCTCATAAGAGCTAATCCACTC-GATAACATGCCAATGCTC
**
71355792 ATAAGAGT
65 ATAAGAAC
* * * *
71355800 TAATCCACCCGATA-ACATGCCAATTGCTCATAAGAGCTAATCCA
1 TAATCCAACCAAAACACAT--CAGTTGCTCATAAGAGCTAATCCA
71355844 ACCGAAACAC
Statistics
Matches: 99, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
71 10 0.10
72 32 0.32
73 57 0.58
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.22
Consensus pattern (72 bp):
TAATCCAACCAAAACACATCAGTTGCTCATAAGAGCTAATCCACTCGATAACATGCCAATGCTCA
TAAGAAC
Found at i:71355792 original size:36 final size:36
Alignment explanation
Indices: 71355678--71355843 Score: 169
Period size: 36 Copynumber: 4.6 Consensus size: 36
71355668 AAACGCCAGT
*
71355678 TGCTCATAAGAGTTAATCCA-CTCGATAACATGCCAA
1 TGCTCATAAGAGCTAATCCACCT-GATAACATGCCAA
* * * *
71355714 TCGCTCATAAGAACTAATCCAACC-AAAACACAT--CAG
1 T-GCTCATAAGAGCTAATCC-ACCTGATA-ACATGCCAA
* *
71355750 TCGCTCATAAGAGCTAATCCACCTGATAATATGTCAA
1 T-GCTCATAAGAGCTAATCCACCTGATAACATGCCAA
* *
71355787 TGCTCATAAGAGTTAATCCACCCGATAACATGCCAA
1 TGCTCATAAGAGCTAATCCACCTGATAACATGCCAA
71355823 TTGCTCATAAGAGCTAATCCA
1 -TGCTCATAAGAGCTAATCCA
71355844 ACCGAAACAC
Statistics
Matches: 107, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
35 6 0.06
36 55 0.51
37 40 0.37
38 5 0.05
39 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.23
Consensus pattern (36 bp):
TGCTCATAAGAGCTAATCCACCTGATAACATGCCAA
Found at i:71369740 original size:20 final size:19
Alignment explanation
Indices: 71369717--71369762 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
71369707 GTGTGAGTAT
71369717 TTATTTTATTTATAATATAA
1 TTATTTTATTTAT-ATATAA
* *
71369737 TTATTAATATTTATATTTAA
1 TTATT-TTATTTATATATAA
71369757 TTATTT
1 TTATTT
71369763 GTAACTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTATTTTATTTATATATAA
Found at i:71369927 original size:21 final size:22
Alignment explanation
Indices: 71369885--71369929 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
71369875 TAAATGAACT
* * *
71369885 AACAAAAACACAAATAATTTTA
1 AACAAAAACAAAAACAAATTTA
71369907 AACAAAAA-AAAAACAAATTTA
1 AACAAAAACAAAAACAAATTTA
71369928 AA
1 AA
71369930 ATTCTTAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.71, C:0.11, G:0.00, T:0.18
Consensus pattern (22 bp):
AACAAAAACAAAAACAAATTTA
Found at i:71373695 original size:39 final size:39
Alignment explanation
Indices: 71373652--71373749 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 39
71373642 TAATTTAGTT
* *
71373652 TGAGTCTTTAATTATGTCATAATTTGAACATCATAAAT-A
1 TGAGT-TTTAATTATGTCATAATCTGAACAACATAAATCA
*
71373691 TGAGTTTTTAATTATGTCATAATCTGAACAACATTAATCA
1 TGAG-TTTTAATTATGTCATAATCTGAACAACATAAATCA
*
71373731 -GGGTTTTAATTATGTCATA
1 TGAGTTTTAATTATGTCATA
71373750 GTTTAGGACA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
38 16 0.30
39 35 0.66
40 2 0.04
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (39 bp):
TGAGTTTTAATTATGTCATAATCTGAACAACATAAATCA
Found at i:71375007 original size:29 final size:29
Alignment explanation
Indices: 71374957--71375013 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
71374947 AGCCCCGTGA
* *
71374957 CAAGTGGTATCCGAGCTGTTGGTTCGAAC
1 CAAGTGATATCCGAGCTATTGGTTCGAAC
* *
71374986 CAAGTGATATCTGAGTTATTGGTTCGAA
1 CAAGTGATATCCGAGCTATTGGTTCGAA
71375014 GGCACCATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (29 bp):
CAAGTGATATCCGAGCTATTGGTTCGAAC
Found at i:71375957 original size:21 final size:20
Alignment explanation
Indices: 71375910--71375957 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 20
71375900 AGTCCGTGGT
*
71375910 CAAGCTTAGTCTAGGGAAAG
1 CAAGCTTGGTCTAGGGAAAG
*
71375930 --NGCTTGGTCTAGGGAAAG
1 CAAGCTTGGTCTAGGGAAAG
71375948 ACAAGCTTGG
1 -CAAGCTTGG
71375958 GTTTTCCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 5
0.73 0.10 0.17
Matches are distributed among these distances:
18 16 0.73
21 6 0.27
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.21
Consensus pattern (20 bp):
CAAGCTTGGTCTAGGGAAAG
Found at i:71380589 original size:23 final size:19
Alignment explanation
Indices: 71380544--71380593 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 19
71380534 TCAATCATGT
*
71380544 TTTATAATTATTGATTTTG
1 TTTATAATTATTGATTTTA
71380563 TTTATAATTATTTAGATATATTA
1 TTTATAATTA-TT-GAT-T-TTA
71380586 TTTATAAT
1 TTTATAAT
71380594 CGTATCGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 10 0.38
20 2 0.08
21 3 0.12
22 1 0.04
23 10 0.38
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (19 bp):
TTTATAATTATTGATTTTA
Found at i:71381209 original size:102 final size:100
Alignment explanation
Indices: 71380972--71381275 Score: 312
Period size: 102 Copynumber: 3.0 Consensus size: 100
71380962 TAAATTAAGG
* * *
71380972 GAAAA-TATTTTGTACATTACTAGTGGAGTTTTTAGACACCACAAGAGAGTTAGGCGGTTGACAA
1 GAAAATTA-TTTGTACATTACTAGTGGAGATTTTAGACTCCACAAGAAAGTTAGG-GGTTGACAA
* * * *
71381036 ATGTCCTATAATGGTATAGTAAAATATTTTAAAAATA
64 GTATCCTATAAAGGTATAGTAAAATATTTAAAAAATA
* * * *
71381073 GAAAATTATTTGGCACATGGT-C-GGTGAAGGTTTTAGACTCCACAAGCAAAGTTAGGGGTTGAC
1 GAAAATTATTT-GTACAT--TACTAGTGGAGATTTTAGACTCCACAAG-AAAGTTAGGGGTTGAC
* *
71381136 AAGTATTCTAT-AGGGTATAGTAAAATATTTAAAAAATA
62 AAGTATCCTATAAAGGTATAGTAAAATATTTAAAAAATA
* * * * *
71381174 GAAAAATTATTTGATACATTACTAGTGGAGATTTTAGATTGCATAAGTAAAATTAAGGGTTGACA
1 G-AAAATTATTTG-TACATTACTAGTGGAGATTTTAGACTCCACAAG-AAAGTTAGGGGTTGACA
* *
71381239 AGTATCCTATAAAGCTATAGTAAAATA-TAAAAAAATA
63 AGTATCCTATAAAGGTATAGTAAAATATTTAAAAAATA
71381276 TTTTAAAAAA
Statistics
Matches: 168, Mismatches: 25, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
100 1 0.01
101 36 0.21
102 107 0.64
103 23 0.14
104 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (100 bp):
GAAAATTATTTGTACATTACTAGTGGAGATTTTAGACTCCACAAGAAAGTTAGGGGTTGACAAGT
ATCCTATAAAGGTATAGTAAAATATTTAAAAAATA
Found at i:71382509 original size:17 final size:18
Alignment explanation
Indices: 71382470--71382510 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
71382460 AATCTTTAAA
71382470 ATAAT-ATTAAAAGAAAT
1 ATAATAATTAAAAGAAAT
* *
71382487 AAAATAATTAAAA-AATT
1 ATAATAATTAAAAGAAAT
71382504 ATAATAA
1 ATAATAA
71382511 ACAGCACTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
ATAATAATTAAAAGAAAT
Found at i:71384622 original size:25 final size:24
Alignment explanation
Indices: 71384565--71384625 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
71384555 TAGTCCATTT
*
71384565 AATTTATTATTATTATTATTTAAA
1 AATTTTTTATTATTATTATTTAAA
* * *
71384589 AACTCTTTTATTATTATTTGTTTTAA
1 AA-TTTTTTATTATTA-TTATTTAAA
71384615 AATTTTTTATT
1 AATTTTTTATT
71384626 TATCATTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 2 0.07
25 19 0.63
26 9 0.30
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (24 bp):
AATTTTTTATTATTATTATTTAAA
Found at i:71384648 original size:26 final size:25
Alignment explanation
Indices: 71384588--71384649 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
71384578 TATTATTTAA
* * *
71384588 AAACTCTTTTATTATTATTTGTTTT
1 AAACTCTTTTATTATCATTTATTGT
* *
71384613 AAAATTTTTTATTTATCATTTATTGT
1 AAACTCTTTTA-TTATCATTTATTGT
*
71384639 AAACTGTTTTA
1 AAACTCTTTTA
71384650 CATGCTTTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (25 bp):
AAACTCTTTTATTATCATTTATTGT
Found at i:71384881 original size:17 final size:17
Alignment explanation
Indices: 71384859--71384892 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
71384849 GTTCTTGTAA
*
71384859 ATTATTTATTTTAAATT
1 ATTATTTACTTTAAATT
71384876 ATTATTTACTTTAAATT
1 ATTATTTACTTTAAATT
71384893 GTTTTGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTATTTACTTTAAATT
Found at i:71387326 original size:79 final size:82
Alignment explanation
Indices: 71387215--71387399 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
71387205 GCTACTCGTT
* *
71387215 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
71387278 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
71387295 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
71387358 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
71387375 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71387400 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:71387399 original size:40 final size:40
Alignment explanation
Indices: 71387196--71387399 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
71387186 CGGAATTTAA
** *
71387196 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71387236 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
71387276 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71387315 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
71387355 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
71387395 CCGGA
1 CCGGA
71387400 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71387887 original size:28 final size:28
Alignment explanation
Indices: 71387847--71387902 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
71387837 AATTTTCTAA
71387847 GCCAAGACAAAAGCATCAATATGCTTGC
1 GCCAAGACAAAAGCATCAATATGCTTGC
71387875 GCCAAGACAAAAGCATCAATATGCTTGC
1 GCCAAGACAAAAGCATCAATATGCTTGC
71387903 CTCTGACCGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (28 bp):
GCCAAGACAAAAGCATCAATATGCTTGC
Found at i:71395743 original size:47 final size:47
Alignment explanation
Indices: 71395680--71396030 Score: 603
Period size: 47 Copynumber: 7.4 Consensus size: 47
71395670 CCCTTCGGGA
* * * *
71395680 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71395727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71395774 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71395821 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71395868 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71395915 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
71395962 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71396011 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
71396031 GTACATCAAT
Statistics
Matches: 293, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 250 0.85
49 43 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71396574 original size:150 final size:150
Alignment explanation
Indices: 71396303--71396602 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
71396293 AATTTTCTCA
71396303 CATAAGTCCTATTTACTAAAACTCACATGCAATCGACTAAATCGAAGCTTGAAATTTTCACACAT
1 CATAAGTCCTATTTACTAAAACTCACATGCAATCGACTAAATCGAAGCTTGAAATTTTCACACAT
71396368 TCATAATTACATATTCTAGACCATAAATATCACATTCGAACATTTCGGTGACTCGGTTTAGCGGT
66 TCATAATTACATATTCTAGACCATAAATATCACATTCGAACATTTCGGTGACTCGGTTTAGCGGT
71396433 CCCGAAACCACTTCCCGACT
131 CCCGAAACCACTTCCCGACT
71396453 CATAAGTCCTATTTACTAAAACTCACATGCAATCGACTAAATCGAAGCTTGAAATTTTCACACAT
1 CATAAGTCCTATTTACTAAAACTCACATGCAATCGACTAAATCGAAGCTTGAAATTTTCACACAT
*
71396518 TCATAATTACATATTCTAGACCATAAATATCACATTCGAACATTTCGGTGACTCGGTTTAGTGGT
66 TCATAATTACATATTCTAGACCATAAATATCACATTCGAACATTTCGGTGACTCGGTTTAGCGGT
71396583 CCCGAAACCACTTCCCGACT
131 CCCGAAACCACTTCCCGACT
71396603 AGGGTCAATT
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (150 bp):
CATAAGTCCTATTTACTAAAACTCACATGCAATCGACTAAATCGAAGCTTGAAATTTTCACACAT
TCATAATTACATATTCTAGACCATAAATATCACATTCGAACATTTCGGTGACTCGGTTTAGCGGT
CCCGAAACCACTTCCCGACT
Found at i:71399601 original size:25 final size:25
Alignment explanation
Indices: 71399573--71399624 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
71399563 TTCAGTGGAG
71399573 ACAAAAAAAGCAAAAACAAAAAAAA
1 ACAAAAAAAGCAAAAACAAAAAAAA
* *
71399598 ACAACACAAGCAAAAACAAAAAAAA
1 ACAAAAAAAGCAAAAACAAAAAAAA
71399623 AC
1 AC
71399625 CTCTACCGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.79, C:0.17, G:0.04, T:0.00
Consensus pattern (25 bp):
ACAAAAAAAGCAAAAACAAAAAAAA
Found at i:71401056 original size:50 final size:50
Alignment explanation
Indices: 71401002--71401873 Score: 474
Period size: 50 Copynumber: 17.6 Consensus size: 50
71400992 GCTGTGGAGC
* * * * *
71401002 AGATTAAAGCTACAATGGCGAATCTTGCTTCCCAGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
** ** * * * * **
71401052 AGATTGAAGCCGCAACAAC-ATATCTTACTTCCATGGCGA-TGCAGTGGATC
1 AGATTGAAGCTACAACGGCGA-ATCTTACTTCCCTGAC-ATTGCAATTGAAA
* * *
71401102 AGATTGAAGCTACAATGGCGAATCTT-GTTCCCCGACATTGCAATT-AAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * ** * * **
71401150 AGATTGAAGCCACAATGGCGAATCTTACTTCCCT-AGCGGTGCAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTGAAA
* * * * *
71401200 AGATTAAAGCTACGACAGCGAATCTTGCTTCCCT-A-A---C-ATTGCAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
** * * * * **
71401244 AGATTGAAGCCGCAACGGCGAATCTTACTTCCGTGGCGA-TGCAGTGGATC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATTGAAA
* * *
71401294 AGATTGAAGCTACAACGGTGAATCTT-GTTCCCTGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
** * * * * **
71401343 AGATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATT-CAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATTGAAA
* * * * *
71401393 AGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* * * * **
71401443 AGATTGAAGCCT-CAACGACGAATCTTACTTCCTTGGCGA-TAC-ATTGGAGT
1 AGATTGAAG-CTACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATT-GAAA
* * * * *
71401493 AGATTAAAACTACGACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
** * * * * **
71401543 AGATTGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGA-TGCAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATTGAAA
* * ** * *
71401593 AGATTAAAGCTACGACGATGAATCTTGCTT-CCTCGACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
** * * * * **
71401643 AGATTGAAGCCGCAATGGCGAATCTTACTTCCCTGGCGA-TGCAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATTGAAA
* * * * * * * *
71401693 AGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTACAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
* ** ** * * **
71401743 AGATTGAAACCGCAACGGCGAATCTTACTTCCCTGGTGA-TGCAGTGGAGC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCT-GACATTGCAATTGAAA
* * * * *
71401793 AGATTAAAGCTAC-GCGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
**
71401842 AGATTGAAGCCGCAACGGCGAATCTTACTTCC
1 AGATTGAAGCTACAACGGCGAATCTTACTTCC
71401874 TTGGTGGTGT
Statistics
Matches: 578, Mismatches: 212, Indels: 64
0.68 0.25 0.07
Matches are distributed among these distances:
44 29 0.05
45 1 0.00
47 1 0.00
48 31 0.05
49 107 0.19
50 391 0.68
51 18 0.03
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACATTGCAATTGAAA
Found at i:71401473 original size:100 final size:100
Alignment explanation
Indices: 71400979--71401945 Score: 1276
Period size: 100 Copynumber: 9.8 Consensus size: 100
71400969 ATGAAGTTAC
* * *
71400979 CTTCCCTGGC-AGTGCTGTGGAGCAGATTAAAGCTACAATGGCGAATCTTGCTTCCCAGACATTG
1 CTTCCCTGGCGA-TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTG
* **
71401043 CAATTTAAAAGATTGAAGCCGCAACAAC-ATATCTTA
65 CAATTAAAAAGATTGAAGCCGCAACGGCGA-ATCTTA
* * * *
71401079 CTTCCATGGCGATGCAGTGGATCAGATTGAAGCTACAATGGCGAATCTTG-TTCCCCGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
* *
71401143 AATT-AAAAGATTGAAGCCACAATGGCGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* * * * **
71401177 CTTCCCTAGCGGTGCAGTGGAGCAGATTAAAGCTACGACAGCGAATCTTGCTTCCCTAACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
71401242 ------AAAGATTGAAGCCGCAACGGCGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* * * * *
71401271 CTTCCGTGGCGATGCAGTGGATCAGATTGAAGCTACAACGGTGAATCTTG-TTCCCTGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
71401335 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* * *
71401370 CTTCCATGGCGATTCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
* *
71401435 AATTAAAAAGATTGAAGCCTCAACGACGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* * * * * * *
71401470 CTTCCTTGGCGATACATTGGAGTAGATTAAAACTACGACGGCGAATCTTGCTTCCCTGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
*
71401535 AATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* ** *
71401570 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACGACGATGAATCTTGCTTCCTCGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
*
71401635 AATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* * * *
71401670 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACGACGACAAATCTTGCTTCCCCGACATTAC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
*
71401735 AATTAAAAAGATTGAAACCGCAACGGCGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* *
71401770 CTTCCCTGGTGATGCAGTGGAGCAGATTAAAGCTAC-GCGGCGAATCTTGCTTCCCCGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
*
71401834 AATTTAAAAGATTGAAGCCGCAACGGCGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* * * * * * * * * * *
71401869 CTTCCTTGGTGGTGTAGTGGAACTGATTGAAGCTACAATGGCGAATCGTG-TTCCTCGACATTAC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
*
71401933 AATTAAAAGGATT
66 AATTAAAAAGATT
71401946 AAAACCACAG
Statistics
Matches: 773, Mismatches: 83, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
93 13 0.02
94 69 0.09
98 66 0.09
99 215 0.28
100 409 0.53
101 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (100 bp):
CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
Found at i:71402012 original size:40 final size:40
Alignment explanation
Indices: 71401948--71402155 Score: 150
Period size: 40 Copynumber: 4.9 Consensus size: 40
71401938 AAAGGATTAA
* *
71401948 AACCACAGATCTTATCTCCCTAAGCAGTAATGGAGTAGATCG
1 AACCA-AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* *
71401990 CATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAAG
1 AACCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----G
* ** * **
71402033 AAAAACCAA-TCATATCTCCCTGAAGTTGTAGTGGAGCGGATTAA
1 ---AACCAAGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCG
* *
71402077 AACCACAGATCTTATCTCCCTAAGCAGTAATGGAGTAGATCG
1 AACCA-AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
* * *
71402119 CATCAAGTCTTATCTCCTTAAGCAGTAGTGGAGCAGA
1 AACCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
71402156 AAAAAGAAAC
Statistics
Matches: 128, Mismatches: 25, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
39 1 0.01
40 55 0.43
41 9 0.07
42 8 0.06
43 14 0.11
44 11 0.09
45 11 0.09
46 19 0.15
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (40 bp):
AACCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
Found at i:71402245 original size:129 final size:129
Alignment explanation
Indices: 71401945--71402220 Score: 396
Period size: 129 Copynumber: 2.1 Consensus size: 129
71401935 TTAAAAGGAT
* * *
71401945 TAAAACCACAGATCTTATCTCCCTAAGCAGTAATGGAGTAGATCGCATCAAGTCTTATCTCCCTA
1 TAAAACCACAAATCTCATCTCCCTAAGCAGTAATAGAGTAGATCGCATCAAGTCTTATCTCCCTA
* * * *
71402010 AGCAGTAGTGGAGCAGACAGAAGAAAAACCAATCATATCTCCCTGAAGTTGTAGTGGAGCGGAT
66 AGCAGTAGTGGAGCAGACAGAAGAAAAACCAATCATATCACCCTGAAGTTGCAGTGGAGCAGAC
* * * *
71402074 TAAAACCACAGATCTTATCTCCCTAAGCAGTAATGGAGTAGATCGCATCAAGTCTTATCTCCTTA
1 TAAAACCACAAATCTCATCTCCCTAAGCAGTAATAGAGTAGATCGCATCAAGTCTTATCTCCCTA
* *
71402139 AGCAGTAGTGGAGCAGA-A-AA-AAGAAACCAAGTCTTATCACCTTGAAGTTGCAGTGGAGCAGA
66 AGCAGTAGTGGAGCAGACAGAAGAA-AAACCAA-TCATATCACCCTGAAGTTGCAGTGGAGCAGA
71402201 C
129 C
71402202 TAAAACCACAAATCTCATC
1 TAAAACCACAAATCTCATC
71402221 CCCATGGAGT
Statistics
Matches: 136, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
126 2 0.01
127 9 0.07
128 44 0.32
129 81 0.60
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (129 bp):
TAAAACCACAAATCTCATCTCCCTAAGCAGTAATAGAGTAGATCGCATCAAGTCTTATCTCCCTA
AGCAGTAGTGGAGCAGACAGAAGAAAAACCAATCATATCACCCTGAAGTTGCAGTGGAGCAGAC
Found at i:71403745 original size:26 final size:25
Alignment explanation
Indices: 71403685--71403746 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
71403675 TTTTATTTAA
* * *
71403685 AAACTCTTTTATTATTATTTGTTTT
1 AAACTCTTTTATTATCATTTATTGT
* *
71403710 AAAATTTTTTATTTATCATTTATTGT
1 AAACTCTTTTA-TTATCATTTATTGT
*
71403736 AAACTGTTTTA
1 AAACTCTTTTA
71403747 CATGCTTTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 9 0.31
26 20 0.69
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (25 bp):
AAACTCTTTTATTATCATTTATTGT
Found at i:71403978 original size:17 final size:17
Alignment explanation
Indices: 71403956--71403989 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
71403946 GTTCTTGTAA
*
71403956 ATTATTTATTTTAAATT
1 ATTATTTACTTTAAATT
71403973 ATTATTTACTTTAAATT
1 ATTATTTACTTTAAATT
71403990 GTTTTGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTATTTACTTTAAATT
Found at i:71405506 original size:12 final size:12
Alignment explanation
Indices: 71405489--71405513 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71405479 CTAACGTGCC
71405489 ATTAAATTAAAT
1 ATTAAATTAAAT
71405501 ATTAAATTAAAT
1 ATTAAATTAAAT
71405513 A
1 A
71405514 AAAAAGTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTAAATTAAAT
Found at i:71408605 original size:18 final size:18
Alignment explanation
Indices: 71408584--71408625 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
71408574 TCAATTGAAA
*
71408584 AAGAAGATGTCGGTGAGG
1 AAGAAGATGTAGGTGAGG
71408602 AAGAAGATGTAGGTGAGG
1 AAGAAGATGTAGGTGAGG
71408620 AAGAAG
1 AAGAAG
71408626 GGGCAGTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.40, C:0.02, G:0.43, T:0.14
Consensus pattern (18 bp):
AAGAAGATGTAGGTGAGG
Found at i:71413542 original size:87 final size:87
Alignment explanation
Indices: 71413363--71413545 Score: 215
Period size: 88 Copynumber: 2.1 Consensus size: 87
71413353 GTGCTTCTTT
* ** * *** **
71413363 TTTTTTTTGCACTCATTGGATACTTGAACTTTCAAAATGCATCAAAAAACCCTCAAACTTTTTCA
1 TTTTTTTTCCACTCATTGGATACTTGAACTGCCAAAATGCATCAAAAAAACCTCAAAAAATTAAA
* *
71413428 AAAAAAGCAATTAAGCCCCTGC
66 AAAAAAACAATTAAGCCACTGC
* *
71413450 TTTTTTTTCCACTCAATTGGGTACTTGAACTGCCAAAATGCAT-AAAAAAGACCTTAAAAAATTA
1 TTTTTTTTCCACTC-ATTGGATACTTGAACTGCCAAAATGCATCAAAAAA-ACCTCAAAAAATTA
*
71413514 AAAAAAAAACAATTAAGCCATTGC
64 AAAAAAAAACAATTAAGCCACTGC
71413538 TTTTTTTT
1 TTTTTTTT
71413546 GTTTTTTTGC
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
87 19 0.24
88 61 0.76
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.33
Consensus pattern (87 bp):
TTTTTTTTCCACTCATTGGATACTTGAACTGCCAAAATGCATCAAAAAAACCTCAAAAAATTAAA
AAAAAAACAATTAAGCCACTGC
Found at i:71413755 original size:29 final size:30
Alignment explanation
Indices: 71413723--71413793 Score: 85
Period size: 29 Copynumber: 2.4 Consensus size: 30
71413713 AAAGTTATAG
* *
71413723 AAATTATTAAACTTTAATAAAAA-TATAAA
1 AAATTATTAAAATTTAATAAAAATTAGAAA
*
71413752 AAA-TATTTAAAATTTACTAAAAATTAGAAA
1 AAATTA-TTAAAATTTAATAAAAATTAGAAA
71413782 AAATTA-TAAAAT
1 AAATTATTAAAAT
71413794 GCATAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 2 0.06
29 24 0.67
30 8 0.22
31 2 0.06
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (30 bp):
AAATTATTAAAATTTAATAAAAATTAGAAA
Found at i:71415789 original size:21 final size:21
Alignment explanation
Indices: 71415764--71415822 Score: 70
Period size: 19 Copynumber: 2.9 Consensus size: 21
71415754 TTATGATAAG
71415764 TTTTATAATTCTTTTACGAAT
1 TTTTATAATTCTTTTACGAAT
* *
71415785 TTTTATATTTC-TTTAC-ATT
1 TTTTATAATTCTTTTACGAAT
71415804 TTTTATAATT-TTCTTACGA
1 TTTTATAATTCTT-TTACGA
71415823 CTTTATAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 12 0.38
20 9 0.28
21 11 0.34
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.61
Consensus pattern (21 bp):
TTTTATAATTCTTTTACGAAT
Found at i:71415814 original size:20 final size:22
Alignment explanation
Indices: 71415764--71415822 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 22
71415754 TTATGATAAG
71415764 TTTTATAA-TTCTTTTACGAAT
1 TTTTATAATTTCTTTTACGAAT
*
71415785 TTTTAT-ATTTC-TTTAC-ATT
1 TTTTATAATTTCTTTTACGAAT
*
71415804 TTTTATAATTT-TCTTACGA
1 TTTTATAATTTCTTTTACGA
71415823 CTTTATAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
19 8 0.25
20 14 0.44
21 10 0.31
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.61
Consensus pattern (22 bp):
TTTTATAATTTCTTTTACGAAT
Found at i:71415896 original size:31 final size:30
Alignment explanation
Indices: 71415804--71415906 Score: 79
Period size: 30 Copynumber: 3.5 Consensus size: 30
71415794 TCTTTACATT
* *
71415804 TTTTAT-AATTTTCTTACGACTTTATAAAA
1 TTTTATAAATTTTTTTACGATTTTATAAAA
* * * * * *
71415833 TTATATATATATTTCTAC-ACTTTTCT-ATA
1 TTTTATAAATTTTTTTACGA-TTTTATAAAA
71415862 TTTTATAAATTTTTTTACGATTTTTATAAAA
1 TTTTATAAATTTTTTTACGA-TTTTATAAAA
*
71415893 TTTTA-CAATTTTTT
1 TTTTATAAATTTTTT
71415907 ATAAAAATTA
Statistics
Matches: 54, Mismatches: 16, Indels: 7
0.70 0.21 0.09
Matches are distributed among these distances:
29 22 0.41
30 25 0.46
31 7 0.13
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (30 bp):
TTTTATAAATTTTTTTACGATTTTATAAAA
Found at i:71415924 original size:19 final size:21
Alignment explanation
Indices: 71415881--71415926 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
71415871 TTTTTTTACG
*
71415881 ATTTTTATAAAATTTTACAAT
1 ATTTTTATAAAATATTACAAT
71415902 -TTTTTATAAAA-ATTA-AAT
1 ATTTTTATAAAATATTACAAT
71415920 ATTTTTA
1 ATTTTTA
71415927 ATATTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 3 0.13
19 9 0.39
20 11 0.48
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTTTTATAAAATATTACAAT
Found at i:71416774 original size:5 final size:5
Alignment explanation
Indices: 71416759--71416787 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
71416749 TGCAAAATTA
71416759 AAAAT -AAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
71416788 TGAATTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:71422466 original size:44 final size:45
Alignment explanation
Indices: 71422367--71422467 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 45
71422357 CTACACTGCT
* * * *
71422367 AGGGAAGTAAGATTTGCTATTCTCAGTCTGCCCCATTGCAACTTT
1 AGGGAAATAAGACTTGCTATTCTCAGTCTGCCCCATTGCAACCTC
** * * **
71422412 AGGGGGATAAGACTTGCT-TTCTTAGTCTGCTCTGTTGCAACCTC
1 AGGGAAATAAGACTTGCTATTCTCAGTCTGCCCCATTGCAACCTC
71422456 AGGGAAATAAGA
1 AGGGAAATAAGA
71422468 ACTGATGCGA
Statistics
Matches: 44, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
44 30 0.68
45 14 0.32
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (45 bp):
AGGGAAATAAGACTTGCTATTCTCAGTCTGCCCCATTGCAACCTC
Found at i:71422752 original size:218 final size:218
Alignment explanation
Indices: 71422389--71422897 Score: 840
Period size: 218 Copynumber: 2.3 Consensus size: 218
71422379 TTTGCTATTC
* *
71422389 TCAGTCTGCCCCA-TTGCAACTTTAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCTGTTGCAAC
1 TCAGTCTGCCCCACTT-CAACTTCAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCCGTTGCAAC
* * *
71422453 CTCAGGGAAATAAGAACTGATGCGATCCACTCTACTGCGACTTCATAGAGATAAGATCTATTATT
65 CTCAAGGAAATAAGAACTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATT
* *
71422518 TGAATCCGCTCCACTGCAACTTCAGGGAAATGGGATTATTGGCTTTAATCTACTCCACTGCAAAC
130 TGAATCCGCTCCACTGCAACTTCAGGGAAACGGGATTACTGGCTTTAATCTACTCCACTGCAAAC
71422583 TCAGAGAGATAAGATTCACCATCT
195 TCAGAGAGATAAGATTCACCATCT
* * *
71422607 TCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGCAACC
1 TCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCCGTTGCAACC
* * * * *
71422672 TCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATTATTT
66 TCAAGGAAATAAGAACTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTT
* *
71422737 GAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGTAAACT
131 GAATCCGCTCCACTGCAACTTCAGGGAAACGGGATTACTGGCTTTAATCTACTCCACTGCAAACT
71422802 CAGAGAGATAAGATTCACCATCT
196 CAGAGAGATAAGATTCACCATCT
71422825 TCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCCGTTGCAACC
1 TCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCCGTTGCAACC
*
71422890 TCAGGGAA
66 TCAAGGAA
71422898 TCTTTAGTCT
Statistics
Matches: 268, Mismatches: 22, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
218 266 0.99
219 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (218 bp):
TCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCCGTTGCAACC
TCAAGGAAATAAGAACTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTT
GAATCCGCTCCACTGCAACTTCAGGGAAACGGGATTACTGGCTTTAATCTACTCCACTGCAAACT
CAGAGAGATAAGATTCACCATCT
Found at i:71422951 original size:76 final size:76
Alignment explanation
Indices: 71422821--71422968 Score: 260
Period size: 76 Copynumber: 1.9 Consensus size: 76
71422811 AAGATTCACC
* *
71422821 ATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCCGTTGC
1 ATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
71422886 AACCTCAGGGA
66 AACCTCAGGGA
* *
71422897 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
1 ATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
71422962 AACCTCA
66 AACCTCA
71422969 AGGAGATAAG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 68 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.31
Consensus pattern (76 bp):
ATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
AACCTCAGGGA
Found at i:71423138 original size:294 final size:294
Alignment explanation
Indices: 71422603--71423186 Score: 1053
Period size: 294 Copynumber: 2.0 Consensus size: 294
71422593 AAGATTCACC
71422603 ATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGC
1 ATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGC
71422668 AACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATT
66 AACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATT
* *
71422733 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGTA
131 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGACTTTAATCTACTCCACTGCA
71422798 AACTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTT
196 AACTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTT
* *
71422863 GCTTTCTTAGTCTGCTCCGTTGCAACCTCAGGGA
261 GCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGA
* * *
71422897 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
1 ATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGC
71422962 AACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATT
66 AACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATT
* *
71423027 ATTTGAATCCGCTCTACTGCAACTTCAGGGAGATGGGATTACTGACTTTAATCTACTCCACTGCA
131 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGACTTTAATCTACTCCACTGCA
* *
71423092 AACTCATGA-AGATAAGATTCACCATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACT
196 AACTCA-GAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACT
71423156 TGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
260 TGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
71423187 AGGAGATAAG
Statistics
Matches: 278, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
294 276 0.99
295 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (294 bp):
ATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGC
AACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATT
ATTTGAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGACTTTAATCTACTCCACTGCA
AACTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTT
GCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGA
Found at i:71423277 original size:218 final size:218
Alignment explanation
Indices: 71422897--71424299 Score: 1757
Period size: 218 Copynumber: 6.4 Consensus size: 218
71422887 ACCTCAGGGA
71422897 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
1 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
* * * *
71422962 AACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATT
66 AACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATT
* * * *
71423027 ATTTGAATCCGCTCTACTGCAACTTCAGGGAGATGGGATTACTGACTTTAATCTACTCCACTGCA
131 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTACTCCACTGCA
*
71423092 AACTCATGAAGATAAGATTCACC
196 AACTCAGGAAGATAAGATTCACC
71423115 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
1 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
* * * *
71423180 AACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATT
66 AACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATT
* * * *
71423245 ATTTGAATCCGCTCCACTGCAACTTTAGGGAGATTGGATTACTGGCTTTAATCTACTCCACTGTA
131 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTACTCCACTGCA
*
71423310 AACTCAGGGAGATAAGATTCACC
196 AACTCAGGAAGATAAGATTCACC
* * * * *
71423333 ATCTTCAGTCTGCCCCACTTTAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCACTGC
1 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
* ** * * *
71423398 AACCTTAGGGAGATAAGAATTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATTTGTT
66 AACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATT
* * * *
71423463 GTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTAGC-GGCTTCAATCTGCTCCACTGC
131 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTA-CTGGCTTCAATCTACTCCACTGC
* * **
71423527 AACCTCAGGGAGATAAGATTTGCC
195 AAACTCAGGAAGATAAGATTCACC
* ** * * * *
71423551 ATC-TTCGATCTGTTCCACTTCAAATTCAAGGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTG
1 ATCTTTAG-TCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTG
* *
71423615 CAAGCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAGGATCTAT
65 CAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTAT
* * * *
71423680 TATTTGAATCCGCTCTACTGCAACTTCAGGGAGATGGGATTACTGACTTTAATCTACTCCACTGC
130 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTACTCCACTGC
*
71423745 AAACTCATGAAGATAAGATTCACC
195 AAACTCAGGAAGATAAGATTCACC
71423769 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
1 ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
*
71423834 AACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATT
66 AACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATT
* * * * * *
71423899 GTTTTAATTCGCTCCACTGCAACTTCAGAGAGATAGGATTAGC-GGCTTCAATTTGCTCCACTGC
131 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTA-CTGGCTTCAATCTACTCCACTGC
* **
71423963 AACCTCAGGAAGATAAGATTTGCC
195 AAACTCAGGAAGATAAGATTCACC
* * * * * * * *
71423987 ATC-TTCGATCTGCTCTACTACTAC-TTAGGGAGATAAGA-TCTGC-TTCTTCGGTCTACTCCGC
1 ATCTTTAG-TCTGCCCCACTTCAACTTTAGGGGGATAAGACT-TGCTTTC-TCAGTCTGCTCCGC
* * * *
71424048 TGTAACTTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCT
63 TGCAACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCT
* * * * * * * *
71424113 GTTATTTCAAGCCGCTCCACTACAACTTCAGGAAGATAGGATTATTGGCATCAATCTGCTCCACT
128 ATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTACTCCACT
* * * **
71424178 GCAACCTCAGGGAGATAGGATTTTCC
193 GCAAACTCAGGAAGATAAGATTCACC
* * * ** * * * *
71424204 ATC-TTCGATCTACTCCAC-TCTTGC-TTAGGGAGATAAGA-TCTACTATTCTTCGGTCTACTCC
1 ATCTTTAG-TCTGCCCCACTTC-AACTTTAGGGGGATAAGACT-TGCT-TTC-TCAGTCTGCTCC
* *
71424265 GCTGCAACTTCAGGGAGATAAGACCTGATGTGATC
61 GCTGCAACCTCAGGGAGATAAGACCTGATGCGATC
71424300 AACGATCTGT
Statistics
Matches: 1055, Mismatches: 118, Indels: 23
0.88 0.10 0.02
Matches are distributed among these distances:
216 5 0.00
217 208 0.20
218 788 0.75
219 54 0.05
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (218 bp):
ATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGC
AACCTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATT
ATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTACTCCACTGCA
AACTCAGGAAGATAAGATTCACC
Found at i:71423360 original size:512 final size:512
Alignment explanation
Indices: 71422391--71423408 Score: 1752
Period size: 512 Copynumber: 2.0 Consensus size: 512
71422381 TGCTATTCTC
* * *
71422391 AGTCTGCCCCATTGCAACTTTAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCTGTTGCAACCTC
1 AGTCTGCCCCATTGCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTC
* * *
71422456 AGGGAAATAAGAACTGATGCGATCCACTCTACTGCGACTTCATAGAGATAAGATCTATTATTTGA
66 AAGGAAATAAGAACTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGA
* *
71422521 ATCCGCTCCACTGCAACTTCAGGGAAATGGGATTATTGGCTTTAATCTACTCCACTGCAAACTCA
131 ATCCGCTCCACTGCAACTTCAGGGAAATGGGATTACTGACTTTAATCTACTCCACTGCAAACTCA
71422586 GAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTTTC
196 GAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTTTC
71422651 TCAGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCA
261 TCAGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCA
71422716 GAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTT
326 GAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTT
71422781 TAATCTACTCCACTGTAAACTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACT
391 TAATCTACTCCACTGTAAACTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACT
* * **
71422846 TCAGGGGGATAAGACTTGCTTTCTTAGTCTGCTCCGTTGCAACCTCAGGGAATCTTT
456 TCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCACTGCAACCTCAGGGAATCTTT
71422903 AGTCTGCCCCACTT-CAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCT
1 AGTCTGCCCCA-TTGCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCT
* * * * *
71422967 CAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATTATTTG
65 CAAGGAAATAAGAACTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTG
* *
71423032 AATCCGCTCTACTGCAACTTCAGGGAGATGGGATTACTGACTTTAATCTACTCCACTGCAAACTC
130 AATCCGCTCCACTGCAACTTCAGGGAAATGGGATTACTGACTTTAATCTACTCCACTGCAAACTC
* * *
71423097 ATGA-AGATAAGATTCACCATCTTTAGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTT
195 A-GAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTT
71423161 TCTCAGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTT
259 TCTCAGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTT
* **
71423226 CAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATTGGATTACTGGC
324 CAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGC
* *
71423291 TTTAATCTACTCCACTGTAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTTAA
389 TTTAATCTACTCCACTGTAAACTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAA
*
71423356 CTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCACTGCAACCTTAGGGA
454 CTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCACTGCAACCTCAGGGA
71423409 GATAAGAATT
Statistics
Matches: 476, Mismatches: 28, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
512 472 0.99
513 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (512 bp):
AGTCTGCCCCATTGCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTC
AAGGAAATAAGAACTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGA
ATCCGCTCCACTGCAACTTCAGGGAAATGGGATTACTGACTTTAATCTACTCCACTGCAAACTCA
GAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTACTTTC
TCAGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCA
GAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTT
TAATCTACTCCACTGTAAACTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACT
TCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCACTGCAACCTCAGGGAATCTTT
Found at i:71423413 original size:44 final size:44
Alignment explanation
Indices: 71423121--71424069 Score: 225
Period size: 44 Copynumber: 21.8 Consensus size: 44
71423111 CACCATCTTT
* * * *
71423121 AGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTC
* * * * * *
71423165 AGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTG--AT-GC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTC
* ** * * * * *
71423206 GGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTAT--TATT-TG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCT-TTCTC
* * * ** * ** *
71423250 AATCCGCTCCACTGCAACTTTAGGGAGATTGGA-TTACTGGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTC-TC
* * * * **
71423294 AATCTACTCCACTGTAAAC-TCAGGGAGATAAGA-TTCACCATCTTC
1 AGTCTGCTCCACTG-CAACTTCAGGGAGATAAGACTT-GCTTTC-TC
* **
71423339 AGTCTGCCCCACTTTAACTTCAAGGG-GATAAGACTTGCTTTCTC
1 AGTCTGCTCCACTGCAACTTC-AGGGAGATAAGACTTGCTTTCTC
* * * *
71423383 AGTCTGCTCCACTGCAACCTT-AGGGAGATAAGAATTG-ATGC-G
1 AGTCTGCTCCACTGCAA-CTTCAGGGAGATAAGACTTGCTTTCTC
* * * * * *
71423425 A-TCTACTCTACTGCAACTTCAGAGAGATAAGATTTG-TTGTTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTT-TCTC
* * * * **
71423468 AATCCGCTCCACTGCAACTTCAGAGAGATAGGA-TTAGC-GGCTTC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCTTTC-TC
* * * **
71423512 AATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTC-TC
* * * *
71423557 -GATCTGTTCCACTTCAAATTCAAGGG-GATAAGACTTACTTTCTC
1 AG-TCTGCTCCACTGCAACTTC-AGGGAGATAAGACTTGCTTTCTC
* * * * *
71423601 AGTCTGCTCCGCTGCAAGC-TCAGGGAGATAAGACCTG-ATGC-G
1 AGTCTGCTCCACTGCAA-CTTCAGGGAGATAAGACTTGCTTTCTC
** * * * *
71423643 A-TCCACTCTACTGCAACTTCAGAGAGATAGGATCTAT--TATT-TG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCT-TTCTC
* * * ** * ** *
71423686 AATCCGCTCTACTGCAACTTCAGGGAGATGGGA-TTACTGACTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTC-TC
* * * * * ** *
71423730 AATCTACTCCACTGCAAAC-TCATGAAGATAAGA-TTCACCATCTTT
1 AGTCTGCTCCACTGC-AACTTCAGGGAGATAAGACTT-GCTTTC-TC
* * * *
71423775 AGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTC
* * * * * *
71423819 AGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG-ATGC-G
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTC
* * * *
71423861 A-TCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTG-TTT-TA
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TTGCTTTCTC
* * * **
71423905 ATTC-GCTCCACTGCAACTTCAGAGAGATAGGA-TTAGC-GGCTTC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCTTTC-TC
* * * * * **
71423948 AATTTGCTCCACTGCAACCTCAGGAAGATAAGATTTGCCATCTTC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTC-TC
* * *
71423993 -GATCTGCTCTACTACTACTT-AGGGAGATAAGA-TCTGC-TTCTTC
1 AG-TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCTTTC-TC
* * * *
71424036 GGTCTACTCCGCTGTAACTTCAGGGAGATAAGAC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGAC
71424070 CTGATGCGAT
Statistics
Matches: 661, Mismatches: 184, Indels: 119
0.69 0.19 0.12
Matches are distributed among these distances:
40 6 0.01
41 104 0.16
42 9 0.01
43 45 0.07
44 364 0.55
45 121 0.18
46 12 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTC
Found at i:71424267 original size:654 final size:650
Alignment explanation
Indices: 71422926--71424299 Score: 2050
Period size: 654 Copynumber: 2.1 Consensus size: 650
71422916 TCAACTTTAG
* * *
71422926 GGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGGT
1 GGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGCAA-CTCAGGGAGATAAGACCTGATGCGAT
*
71422991 CCACTCTATTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCTACTGCAACTTCAGG
65 CCACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCTACTGCAACTTCAGG
71423056 GAGATGGGATTACTGACTTTAATCTACTCCACTGCAAACTCATGAAGATAAGATTCACCATCTTT
130 GAGATGGGATTACTGACTTTAATCTACTCCACTGCAAACTCATGAAGATAAGATTCACCATCTTT
71423121 AGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTC
195 AGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTC
* * *
71423186 AAGGAGATAAGACCTGATGCGGTCCACTCTATTGCAACTTCAGAGAGATAGGATCTATTATTTGA
260 AAGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGA
* * * * *
71423251 ATCCGCTCCACTGCAACTTTAGGGAGATTGGATTACTGGCTTTAATCTACTCCACTGTAAACTCA
325 ATCCGCTCCACTGCAACTTCAGAGAGATAGGATTACTGGCTTCAATCTACTCCACTGCAAACTCA
* *
71423316 GGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTTAACTTCAAGGGGATAAGACTTGCTTTC
390 GGAAGATAAGATTCACCATCTTCAGTCTGCCCCACTCTAACTT-AAGGGGATAAGACTTGCTTTC
* *
71423381 TCAGTCTGCTCCACTGCAACCTTAGGGAGATAAGAATTGATGCGATCTACTCTACTGCAACTTCA
454 TCAGTCTACTCCACTGCAACCTTAGGGAGATAAGAACTGATGCGATCTACTCTACTGCAACTTCA
* * * * * *
71423446 GAGAGATAAGATTTGTTGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTAGCGGCTT
519 GAGAGATAAGATCTGTTATTTCAAGCCGCTCCACTACAACTTCAGAGAGATAGGATTAGCGGCAT
**
71423511 CAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTGTTCCACTTCAAAT
584 CAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTACTCCACTTC--AT
71423576 TCAA
647 TCAA
71423580 GGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGCAAGCTCAGGGAGATAAGACCTGATGCGAT
1 GGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGCAA-CTCAGGGAGATAAGACCTGATGCGAT
71423645 CCACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCTACTGCAACTTCAGG
65 CCACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCTACTGCAACTTCAGG
71423710 GAGATGGGATTACTGACTTTAATCTACTCCACTGCAAACTCATGAAGATAAGATTCACCATCTTT
130 GAGATGGGATTACTGACTTTAATCTACTCCACTGCAAACTCATGAAGATAAGATTCACCATCTTT
71423775 AGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTC
195 AGTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTC
* * * *
71423840 AGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTGTTTTA
260 AAGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGA
* * * *
71423905 ATTCGCTCCACTGCAACTTCAGAGAGATAGGATTAGC-GGCTTCAATTTGCTCCACTGCAACCTC
325 ATCCGCTCCACTGCAACTTCAGAGAGATAGGATTA-CTGGCTTCAATCTACTCCACTGCAAACTC
** * *
71423969 AGGAAGATAAGATTTGCCATCTTC-GATCTGCTCTACTACT-ACTT-AGGGAGATAAGA-TCTGC
389 AGGAAGATAAGATTCACCATCTTCAG-TCTGCCCCACT-CTAACTTAAGGG-GATAAGACT-TGC
* * * * *
71424030 -TTCTTCGGTCTACTCCGCTGTAA-CTTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTA
450 TTTC-TCAGTCTACTCCACTGCAACCTT-AGGGAGATAAGAACTGATGCGATCTACTCTACTGCA
71424093 ACTTCAGAGAGATAAGATCTGTTATTTCAAGCCGCTCCACTACAACTTCAG-GAAGATAGGATTA
513 ACTTCAGAGAGATAAGATCTGTTATTTCAAGCCGCTCCACTACAACTTCAGAG-AGATAGGATTA
** * *
71424157 TTGGCATCAATCTGCTCCACTGCAACCTCAGGGAGATAGGATTTTCCATCTTCGATCTACTCCAC
577 GCGGCATCAATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTACTCCAC
*
71424222 -TC-TTGCTTA
642 TTCATT-C-AA
* *
71424231 GGGAGATAAGA-TCTACTATTCTTCGGTCTACTCCGCTGCAACTTCAGGGAGATAAGACCTGATG
1 GGG-GATAAGACT-TACT-TTC-TCAGTCTGCTCCGCTGCAAC-TCAGGGAGATAAGACCTGATG
*
71424295 TGATC
61 CGATC
71424300 AACGATCTGT
Statistics
Matches: 655, Mismatches: 50, Indels: 30
0.89 0.07 0.04
Matches are distributed among these distances:
649 2 0.00
650 1 0.00
651 5 0.01
652 25 0.04
653 178 0.27
654 442 0.67
655 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (650 bp):
GGGGATAAGACTTACTTTCTCAGTCTGCTCCGCTGCAACTCAGGGAGATAAGACCTGATGCGATC
CACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCTACTGCAACTTCAGGG
AGATGGGATTACTGACTTTAATCTACTCCACTGCAAACTCATGAAGATAAGATTCACCATCTTTA
GTCTGCCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
AGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAA
TCCGCTCCACTGCAACTTCAGAGAGATAGGATTACTGGCTTCAATCTACTCCACTGCAAACTCAG
GAAGATAAGATTCACCATCTTCAGTCTGCCCCACTCTAACTTAAGGGGATAAGACTTGCTTTCTC
AGTCTACTCCACTGCAACCTTAGGGAGATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGA
GAGATAAGATCTGTTATTTCAAGCCGCTCCACTACAACTTCAGAGAGATAGGATTAGCGGCATCA
ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTCGATCTACTCCACTTCATTCAA
Found at i:71429026 original size:11 final size:12
Alignment explanation
Indices: 71429002--71429032 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
71428992 ACCTATGAGG
71429002 GAATATATCAAA
1 GAATATATCAAA
71429014 GAATATA-CAAA
1 GAATATATCAAA
71429025 GAATATAT
1 GAATATAT
71429033 AAATTTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.58, C:0.06, G:0.10, T:0.26
Consensus pattern (12 bp):
GAATATATCAAA
Found at i:71434709 original size:69 final size:69
Alignment explanation
Indices: 71434598--71434875 Score: 520
Period size: 69 Copynumber: 4.0 Consensus size: 69
71434588 AAAGTGAAAC
* * * *
71434598 AGCTATATGCAGGGTTCCAATATTGAGCAAGGGCCCGAAACAATTGTTCATCCACCTTGATGTCC
1 AGCTACATGTAGGTTTCCAATATTGAGCAAGGGCTCGAAACAATTGTTCATCCACCTTGATGTCC
71434663 AATA
66 AATA
71434667 AGCTACATGTAGGTTTCCAATATTGAGCAAGGGCTCGAAACAATTGTTCATCCACCTTGATGTCC
1 AGCTACATGTAGGTTTCCAATATTGAGCAAGGGCTCGAAACAATTGTTCATCCACCTTGATGTCC
71434732 AATA
66 AATA
71434736 AGCTACATGTAGGTTTCCAATATTGAGCAAGGGCTCGAAACAATTGTTCATCCACCTTGATGTCC
1 AGCTACATGTAGGTTTCCAATATTGAGCAAGGGCTCGAAACAATTGTTCATCCACCTTGATGTCC
71434801 AATA
66 AATA
71434805 AGCTACATGTAGGTTTCCAATATTGAGCAAGGGCTCGAAACAATTGTTCATCCACCTTGATGTCC
1 AGCTACATGTAGGTTTCCAATATTGAGCAAGGGCTCGAAACAATTGTTCATCCACCTTGATGTCC
71434870 AATA
66 AATA
71434874 AG
1 AG
71434876 TATGTCAAGT
Statistics
Matches: 205, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 205 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (69 bp):
AGCTACATGTAGGTTTCCAATATTGAGCAAGGGCTCGAAACAATTGTTCATCCACCTTGATGTCC
AATA
Found at i:71437002 original size:17 final size:18
Alignment explanation
Indices: 71436982--71437015 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
71436972 ATATATAAAA
71436982 AAATTTAAAAAA-ATTGT
1 AAATTTAAAAAATATTGT
71436999 AAATTTAAAAAATATTG
1 AAATTTAAAAAATATTG
71437016 ATAATAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
AAATTTAAAAAATATTGT
Found at i:71438074 original size:6 final size:6
Alignment explanation
Indices: 71438060--71438111 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
71438050 CTTTTAATAA
* *
71438060 TTTTGT TTTTAT TTTTGT TTTTAT TTTTATT TTTTAT ATTTT-T TGTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT -TTTTAT T-TTTAT
71438110 TT
1 TT
71438112 ATTTCTGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 1 0.03
6 26 0.67
7 12 0.31
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:71438077 original size:12 final size:12
Alignment explanation
Indices: 71438060--71438111 Score: 61
Period size: 12 Copynumber: 4.2 Consensus size: 12
71438050 CTTTTAATAA
71438060 TTTTGTTTTTAT
1 TTTTGTTTTTAT
71438072 TTTTGTTTTTAT
1 TTTTGTTTTTAT
*
71438084 TTTTATTTTTTAT
1 TTTT-GTTTTTAT
71438097 ATTTT-TTGTTTAT
1 -TTTTGTT-TTTAT
71438110 TT
1 TT
71438112 ATTTCTGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
12 20 0.56
13 12 0.33
14 4 0.11
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.83
Consensus pattern (12 bp):
TTTTGTTTTTAT
Found at i:71438114 original size:15 final size:14
Alignment explanation
Indices: 71438060--71438115 Score: 57
Period size: 15 Copynumber: 4.1 Consensus size: 14
71438050 CTTTTAATAA
71438060 TTTTG-TTTTTA-T
1 TTTTGTTTTTTATT
71438072 TTTTG-TTTTTATT
1 TTTTGTTTTTTATT
71438085 TTTAT-TTTTTATATT
1 TTT-TGTTTTT-TATT
71438100 TTTTGTTTATTTATT
1 TTTTGTTT-TTTATT
71438115 T
1 T
71438116 CTGATTTGGG
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
12 11 0.29
13 4 0.11
14 6 0.16
15 15 0.39
16 2 0.05
ACGTcount: A:0.12, C:0.00, G:0.05, T:0.82
Consensus pattern (14 bp):
TTTTGTTTTTTATT
Found at i:71441531 original size:20 final size:20
Alignment explanation
Indices: 71441495--71441533 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
71441485 TATGACTTAT
71441495 AAACATTTAAAAGTAATTTA
1 AAACATTTAAAAGTAATTTA
71441515 AAACACTTTAAAA-TAATTT
1 AAACA-TTTAAAAGTAATTT
71441534 TTAATTGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36
Consensus pattern (20 bp):
AAACATTTAAAAGTAATTTA
Found at i:71443851 original size:26 final size:26
Alignment explanation
Indices: 71443824--71443991 Score: 205
Period size: 26 Copynumber: 6.5 Consensus size: 26
71443814 TTTTCCATAT
* * *
71443824 AGGCTCTCTTTCATGTTAAGCCACAT
1 AGGCTTTCTTTCATATTAAGCCACAC
* * *
71443850 AGGCTTTCTTCCATATTACGCCACAT
1 AGGCTTTCTTTCATATTAAGCCACAC
* *
71443876 AGGCTTTCTTTCATATTATGCCTCAC
1 AGGCTTTCTTTCATATTAAGCCACAC
71443902 AGGCTTTCTTTCATATTACA-CCACAC
1 AGGCTTTCTTTCATATTA-AGCCACAC
* *
71443928 AAGCTTTCTTTCATATTACGCCACAC
1 AGGCTTTCTTTCATATTAAGCCACAC
*
71443954 AGGCTTTCTTTCATATTACA-CTACAC
1 AGGCTTTCTTTCATATTA-AGCCACAC
71443980 AGGCTTTCTTTC
1 AGGCTTTCTTTC
71443992 TTGACGTGTT
Statistics
Matches: 124, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 124 1.00
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.38
Consensus pattern (26 bp):
AGGCTTTCTTTCATATTAAGCCACAC
Found at i:71443878 original size:52 final size:52
Alignment explanation
Indices: 71443824--71443991 Score: 228
Period size: 52 Copynumber: 3.2 Consensus size: 52
71443814 TTTTCCATAT
* * * * *
71443824 AGGCTCTCTTTCATGTTAAGCCACATAGGCTTTCTTCCATATTACGCCACAT
1 AGGCTTTCTTTCATATTAAGCCACACAGGCTTTCTTCCATATTACACCACAC
* * *
71443876 AGGCTTTCTTTCATATTATGCCTCACAGGCTTTCTTTCATATTACACCACAC
1 AGGCTTTCTTTCATATTAAGCCACACAGGCTTTCTTCCATATTACACCACAC
* * * *
71443928 AAGCTTTCTTTCATATTACGCCACACAGGCTTTCTTTCATATTACACTACAC
1 AGGCTTTCTTTCATATTAAGCCACACAGGCTTTCTTCCATATTACACCACAC
71443980 AGGCTTTCTTTC
1 AGGCTTTCTTTC
71443992 TTGACGTGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 103 1.00
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.38
Consensus pattern (52 bp):
AGGCTTTCTTTCATATTAAGCCACACAGGCTTTCTTCCATATTACACCACAC
Found at i:71443912 original size:78 final size:78
Alignment explanation
Indices: 71443824--71443991 Score: 234
Period size: 78 Copynumber: 2.2 Consensus size: 78
71443814 TTTTCCATAT
* * * * *
71443824 AGGCTCTCTTTCATGTTA-AGCCACATAGGCTTTCTTCCATATTACGCCACATAGGCTTTCTTTC
1 AGGCTTTCTTTCATATTACA-CCACACAAGCTTTCTTCCATATTACGCCACACAGGCTTTCTTTC
71443888 ATATTATGC-CT-CAC
65 ATATTA--CACTACAC
*
71443902 AGGCTTTCTTTCATATTACACCACACAAGCTTTCTTTCATATTACGCCACACAGGCTTTCTTTCA
1 AGGCTTTCTTTCATATTACACCACACAAGCTTTCTTCCATATTACGCCACACAGGCTTTCTTTCA
71443967 TATTACACTACAC
66 TATTACACTACAC
71443980 AGGCTTTCTTTC
1 AGGCTTTCTTTC
71443992 TTGACGTGTT
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
76 1 0.01
77 2 0.02
78 77 0.95
79 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.38
Consensus pattern (78 bp):
AGGCTTTCTTTCATATTACACCACACAAGCTTTCTTCCATATTACGCCACACAGGCTTTCTTTCA
TATTACACTACAC
Found at i:71445096 original size:21 final size:19
Alignment explanation
Indices: 71445046--71445088 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
71445036 TGATATATAG
71445046 CTCCCTAAATCCCAATATT
1 CTCCCTAAATCCCAATATT
71445065 CTCCCTAAATCCCAATATT
1 CTCCCTAAATCCCAATATT
71445084 CTCCC
1 CTCCC
71445089 CTTAAATCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.28, C:0.42, G:0.00, T:0.30
Consensus pattern (19 bp):
CTCCCTAAATCCCAATATT
Found at i:71448854 original size:6 final size:6
Alignment explanation
Indices: 71448843--71448876 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
71448833 TGATTATCAT
*
71448843 ATTCAC ATTCAC ATTCAC ATTCGC ATTCAC ATTC
1 ATTCAC ATTCAC ATTCAC ATTCAC ATTCAC ATTC
71448877 TCACTAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.29, C:0.32, G:0.03, T:0.35
Consensus pattern (6 bp):
ATTCAC
Found at i:71453268 original size:20 final size:20
Alignment explanation
Indices: 71453200--71453269 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
71453190 ATAATTTATT
*
71453200 TAAAAT-TTAGAAAATTCAAA
1 TAAAATATTTGAAAATT-AAA
*
71453220 -AAAATATTTTAAAA--AATA
1 TAAAATATTTGAAAATTAA-A
71453238 TTAAAATTATTTGAAAATTAAA
1 -TAAAA-TATTTGAAAATTAAA
71453260 TAAAATATTT
1 TAAAATATTT
71453270 TTTAATTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
17 2 0.05
18 1 0.03
19 5 0.12
20 15 0.38
21 14 0.35
22 1 0.03
23 2 0.05
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (20 bp):
TAAAATATTTGAAAATTAAA
Found at i:71453656 original size:3 final size:3
Alignment explanation
Indices: 71453648--71453684 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
71453638 AAAAACAAAA
71453648 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
71453685 GGTAATTAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:71456620 original size:132 final size:132
Alignment explanation
Indices: 71456400--71456800 Score: 633
Period size: 132 Copynumber: 3.0 Consensus size: 132
71456390 CGTTATTGTT
* ** * ** *
71456400 GATCTGCTCCACTACTGCTTAGGGGGACAGAATCTATAGTCTTTGACCTACCCCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
71456465 GGGTGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
66 GGGTGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
71456530 TC
131 TC
* *
71456532 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTTCACTACTGTTTA
1 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
*
71456597 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
66 GGGTGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
*
71456662 TT
131 TC
* *
71456664 GATCTGCTCCACTACTGCTTAGGTTGACAGAATCTGCAATCTTCAACCTACTCCACTACTACTTA
1 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
* * * *
71456729 AGGTGATAAGACTAATGGCTTAAATCC-GCTTCTCCACTGTAATGGGAAGATAAGATTCACTATC
66 GGGTGATAGGACTAATGGCTTAAA-CCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATC
71456793 TTC
130 TTC
71456796 GATCT
1 GATCT
71456801 ACTCTGCTGC
Statistics
Matches: 247, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
132 246 1.00
133 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTA
GGGTGATAGGACTAATGGCTTAAACCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
TC
Found at i:71456840 original size:46 final size:46
Alignment explanation
Indices: 71456773--71456932 Score: 241
Period size: 46 Copynumber: 3.5 Consensus size: 46
71456763 CACTGTAATG
* * *
71456773 GGAAGATAAGAT-TCACTATCTTCGATCTACTCTGCTGCCAAATACA
1 GGAAGACAAGATCT-ACTATCTTCGATCTCCTCCGCTGCCAAATACA
*
71456819 GGAAGACAAGATCTACTATCTTCAATCTCCTCCGCTGCCAAATACA
1 GGAAGACAAGATCTACTATCTTCGATCTCCTCCGCTGCCAAATACA
* *
71456865 GGAAGATAAGATTTACTATCTTCGATCTCCTCCGCTGCCAAATACA
1 GGAAGACAAGATCTACTATCTTCGATCTCCTCCGCTGCCAAATACA
*
71456911 GGAAGACAAGATCTGCTATCTT
1 GGAAGACAAGATCTACTATCTT
71456933 TAGTCTGCTC
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
46 102 0.99
47 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (46 bp):
GGAAGACAAGATCTACTATCTTCGATCTCCTCCGCTGCCAAATACA
Found at i:71457074 original size:88 final size:88
Alignment explanation
Indices: 71456959--71457991 Score: 1697
Period size: 88 Copynumber: 11.7 Consensus size: 88
71456949 TAGTACAAGA
* * * * *
71456959 AGGCAAGGTTTGTGTTTTCGACATGCTTCGCTGTCAATGCAGGAAGGCAAGATCTATTGTCCTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
71457024 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
71457047 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTATCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
*
71457112 ACCAGCTCTATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * * *
71457135 AGGCAAGGTTTGTGTCTTTGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCATTTATCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
*
71457200 ACCAACTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* ** *
71457223 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTATCAATGTAGGAAGGCAAGATCTTTTATCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
*
71457288 ACCAGCTCCATCACAACCGAGAA
66 ACCAGCTCCATCACAACCGAGAG
* * *
71457311 AGGCAAGGTTTGTGTCTTCAACCTGCTCCGCTGTCAATATAGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
71457376 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * * *
71457399 AGGCAAGGTTTGTGTATTCGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTTTTGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
71457464 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
71457487 AGGCAAGGTTTGTGTCTTCGACCTGCATCGCTGTCAATACAGGAAGGCAAGATCTTTTGTTTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
*
71457552 ACTAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
71457575 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
71457640 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * *
71457663 AGGCAAGGTTTGTGTATTCGATCTGCTTCGCTGTCAATATAGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
71457728 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* *
71457751 AGGCAAGGTTTGGGTCTTCGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
71457816 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * *
71457839 AGGCAAGGTTTGTGTCTTCAACCTGCTCCGCTGTCAATATAGGAAGGCAAGATCTTTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
71457904 ACCAGCTCCATCACAACCGAGAG
66 ACCAGCTCCATCACAACCGAGAG
* * ** *
71457927 AGGCAAGGTTTGTTTCTTCGACCTGCTTCACTGTCAATGTAGGAAGGCAAGATCTGTTGTCTTCA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
71457992 CTGATCTGTT
Statistics
Matches: 891, Mismatches: 54, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 891 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (88 bp):
AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCA
ACCAGCTCCATCACAACCGAGAG
Found at i:71459222 original size:16 final size:17
Alignment explanation
Indices: 71459196--71459231 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
71459186 AGCCTCTCCA
71459196 TTTTTACTTTTTCATTT
1 TTTTTACTTTTTCATTT
71459213 TTTTTA-TTTTTCATTT
1 TTTTTACTTTTTCATTT
71459229 TTT
1 TTT
71459232 CATTCATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTACTTTTTCATTT
Found at i:71459241 original size:24 final size:23
Alignment explanation
Indices: 71459195--71459241 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
71459185 TAGCCTCTCC
**
71459195 ATTTTTACTTTTTCATTTTTTTT
1 ATTTTTACTTTTTCATTCATTTT
*
71459218 ATTTTTCATTTTTTCATTCATTTT
1 ATTTTT-ACTTTTTCATTCATTTT
71459242 TTTAAGTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (23 bp):
ATTTTTACTTTTTCATTCATTTT
Found at i:71460094 original size:18 final size:19
Alignment explanation
Indices: 71460054--71460101 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
71460044 TGACCTCTCA
* *
71460054 TTTTTCTTTTCCTCTTCTTT
1 TTTTTCTTTT-CTCTCCTAT
71460074 TTTTTCTTTT-TCTCCTAT
1 TTTTTCTTTTCTCTCCTAT
71460092 TTTTTACTTT
1 TTTTT-CTTT
71460102 GATTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 11 0.44
19 4 0.16
20 10 0.40
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTCTTTTCTCTCCTAT
Found at i:71460094 original size:19 final size:19
Alignment explanation
Indices: 71460054--71460101 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
71460044 TGACCTCTCA
*
71460054 TTTTTCTTTTCCTCTTCTTT
1 TTTTTCTTTT-CTCTCCTTT
71460074 TTTTTCTTTT-TCTCCTATT
1 TTTTTCTTTTCTCTCCT-TT
*
71460093 TTTTACTTT
1 TTTTTCTTT
71460102 GATTTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.20
19 10 0.40
20 10 0.40
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTCTTTTCTCTCCTTT
Found at i:71460094 original size:20 final size:20
Alignment explanation
Indices: 71460054--71460096 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
71460044 TGACCTCTCA
* *
71460054 TTTTTCTTTTCCTCTTCTTT
1 TTTTTCTTTTCCTCCTATTT
*
71460074 TTTTTCTTTTTCTCCTATTT
1 TTTTTCTTTTCCTCCTATTT
71460094 TTT
1 TTT
71460097 ACTTTGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTCTTTTCCTCCTATTT
Found at i:71460134 original size:8 final size:9
Alignment explanation
Indices: 71460099--71460146 Score: 78
Period size: 9 Copynumber: 5.3 Consensus size: 9
71460089 TATTTTTTAC
71460099 TTTGATTTT
1 TTTGATTTT
* *
71460108 TTTTAATTT
1 TTTGATTTT
71460117 TTTGATTTT
1 TTTGATTTT
71460126 TTTGATTTT
1 TTTGATTTT
71460135 TTTGATTTT
1 TTTGATTTT
71460144 TTT
1 TTT
71460147 TAGTCTGAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.79
Consensus pattern (9 bp):
TTTGATTTT
Found at i:71464985 original size:72 final size:72
Alignment explanation
Indices: 71464871--71465041 Score: 173
Period size: 72 Copynumber: 2.4 Consensus size: 72
71464861 AAAGCGCCGC
* * ** * * *
71464871 AAAAACCAAAGCCCAACGACGCCGTTTTCGAGCTTTTGGGGATTTAGCGACGTTTTTAATCAAGC
1 AAAAACCTAAGCCAAACGGTGCCGTTTCCGAGCTTTTGGGGATTTAGCGACATTTTTAAGCAAGC
*
71464936 GCCATTA
66 GCCACTA
* * * * ** *
71464943 ATAATCCTAAGCCAAACGGTGCCGTTTCCGTAG-TTTTTGGGATTTAGCGGCATTTTTGGGGAAG
1 AAAAACCTAAGCCAAACGGTGCCGTTTCCG-AGCTTTTGGGGATTTAGCGACATTTTTAAGCAAG
*
71465007 CGCCGCTA
65 CGCCACTA
*
71465015 AAAAACCTAAGCCAAACGGTGTCGTTT
1 AAAAACCTAAGCCAAACGGTGCCGTTT
71465042 TCTCAGCTAT
Statistics
Matches: 79, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
72 77 0.97
73 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (72 bp):
AAAAACCTAAGCCAAACGGTGCCGTTTCCGAGCTTTTGGGGATTTAGCGACATTTTTAAGCAAGC
GCCACTA
Found at i:71465241 original size:75 final size:77
Alignment explanation
Indices: 71465141--71465284 Score: 170
Period size: 75 Copynumber: 1.9 Consensus size: 77
71465131 AAACATATGT
* * *
71465141 CCAACGACACCGTTTTCAGATCTTTCGAG-GCA-TTGGCTGCATTTT-TAATG-AAGCGCCGCTA
1 CCAACGACACCGTTTTCAGAACTTTC-AGTGCATTTAGCGGCATTTTCTAA-GAAAGCGCCGCTA
71465202 ATGCTTGGGGGTGC
64 ATGCTTGGGGGTGC
* ** * *
71465216 CCAACGGCACCGTTTTCTTAACTTTCAGTGGATTTAGCGGCGTTTTCTAAGAAAGCGCCGCTAAT
1 CCAACGACACCGTTTTCAGAACTTTCAGTGCATTTAGCGGCATTTTCTAAGAAAGCGCCGCTAAT
71465281 GCTT
66 GCTT
71465285 CCTTTAGCGG
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
74 2 0.04
75 24 0.42
76 11 0.19
77 20 0.35
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (77 bp):
CCAACGACACCGTTTTCAGAACTTTCAGTGCATTTAGCGGCATTTTCTAAGAAAGCGCCGCTAAT
GCTTGGGGGTGC
Found at i:71465651 original size:7 final size:7
Alignment explanation
Indices: 71465641--71465703 Score: 56
Period size: 7 Copynumber: 8.9 Consensus size: 7
71465631 GATTTAAAGT
71465641 TTAGGGG
1 TTAGGGG
*
71465648 TTAGGTG
1 TTAGGGG
* **
71465655 TTATGCT
1 TTAGGGG
71465662 TTAGGGG
1 TTAGGGG
71465669 TTAGGGG
1 TTAGGGG
71465676 TTAGGGG
1 TTAGGGG
71465683 ATTTAGGGG
1 --TTAGGGG
*
71465692 TTA-CGG
1 TTAGGGG
71465698 TTAGGG
1 TTAGGG
71465704 TTTCAATGCA
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
6 5 0.11
7 32 0.73
9 7 0.16
ACGTcount: A:0.16, C:0.03, G:0.46, T:0.35
Consensus pattern (7 bp):
TTAGGGG
Found at i:71465876 original size:20 final size:20
Alignment explanation
Indices: 71465853--71465902 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
71465843 GTGTTAGAGA
71465853 TTGAGTTTGGGGTTTAAGGT
1 TTGAGTTTGGGGTTTAAGGT
* *
71465873 TTGAGTTTAGGGTTTTAGGGT
1 TTGAGTTT-GGGGTTTAAGGT
71465894 TT-AGTTTGG
1 TTGAGTTTGG
71465903 AAATTGAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 13 0.48
21 12 0.44
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (20 bp):
TTGAGTTTGGGGTTTAAGGT
Found at i:71466062 original size:21 final size:19
Alignment explanation
Indices: 71466030--71466111 Score: 65
Period size: 21 Copynumber: 3.9 Consensus size: 19
71466020 CAAAAAATAT
71466030 GGTTTAGGTTTACGGTTTAG
1 GGTTTAGGTTTA-GGTTTAG
71466050 GGTTTACGGTTTAGAGTTTAG
1 GGTTTA-GGTTTAG-GTTTAG
* *
71466071 AGTTTTAGGTTTGGGGTTTAG
1 -GGTTTAGGTTT-AGGTTTAG
* *
71466092 GATTTATGATTTAAGGTTTA
1 GGTTTA-GGTTT-AGGTTTA
71466112 TGATATATTG
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
20 12 0.24
21 33 0.65
22 6 0.12
ACGTcount: A:0.20, C:0.02, G:0.32, T:0.46
Consensus pattern (19 bp):
GGTTTAGGTTTAGGTTTAG
Found at i:71466068 original size:7 final size:6
Alignment explanation
Indices: 71466030--71466111 Score: 56
Period size: 7 Copynumber: 12.0 Consensus size: 6
71466020 CAAAAAATAT
71466030 GGTTTA GGTTTA CGGTTTA GGGTTTA CGGTTTA GAGTTTA GAGTTTTA
1 GGTTTA GGTTTA -GGTTTA -GGTTTA -GGTTTA G-GTTTA G-G-TTTA
* *
71466078 GGTTTGG GGTTTA GGATTTA TGATTTAA GGTTTA
1 GGTTT-A GGTTTA GG-TTTA -GGTTT-A GGTTTA
71466112 TGATATATTG
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
6 13 0.21
7 43 0.68
8 7 0.11
ACGTcount: A:0.20, C:0.02, G:0.32, T:0.46
Consensus pattern (6 bp):
GGTTTA
Found at i:71466075 original size:14 final size:13
Alignment explanation
Indices: 71466030--71466111 Score: 67
Period size: 14 Copynumber: 5.9 Consensus size: 13
71466020 CAAAAAATAT
71466030 GGTTTAGGTTTAC
1 GGTTTAGGTTTAC
71466043 GGTTTAGGGTTTAC
1 GGTTTA-GGTTTAC
71466057 GGTTTAGAGTTTA-
1 GGTTTAG-GTTTAC
**
71466070 GAGTTTTAGGTTTGG
1 G-G-TTTAGGTTTAC
*
71466085 GGTTTAGGATTTAT
1 GGTTTAGG-TTTAC
*
71466099 GATTTAAGGTTTA
1 GGTTT-AGGTTTA
71466112 TGATATATTG
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
13 14 0.24
14 35 0.60
15 9 0.16
ACGTcount: A:0.20, C:0.02, G:0.32, T:0.46
Consensus pattern (13 bp):
GGTTTAGGTTTAC
Found at i:71466766 original size:115 final size:115
Alignment explanation
Indices: 71466560--71466797 Score: 395
Period size: 115 Copynumber: 2.1 Consensus size: 115
71466550 GCGCTTCAGA
* * * *
71466560 AAAAACGCCGCTAAAGGTGATATATTACCCGCGTTTTGTGAAGAAACGCCGCAAATTTCCTTTAA
1 AAAAACGCCGCTAAAAGTGATATATTACCAGCGTTTTATGAAGAAACGCCACAAATTTCCTTTAA
71466625 CTGTAACAAAGACGGTGCCGTTTTGTTATTTTCTTTTAGTGGCACATTTG
66 CTGTAACAAAGACGGTGCCGTTTTGTTATTTTCTTTTAGTGGCACATTTG
*
71466675 AAATACGCCGCTAAAAGTGATATATTACCAGCGTTTTATGAAGAAACGCCACAAATTTCCTTTAA
1 AAAAACGCCGCTAAAAGTGATATATTACCAGCGTTTTATGAAGAAACGCCACAAATTTCCTTTAA
* * * *
71466740 CTGTAACAAATACGGTGCCGTTTTGTTGTTTTCTTTTAGTGGCGCATTTT
66 CTGTAACAAAGACGGTGCCGTTTTGTTATTTTCTTTTAGTGGCACATTTG
71466790 AAAAACGC
1 AAAAACGC
71466798 TAGAAATATT
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
115 113 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (115 bp):
AAAAACGCCGCTAAAAGTGATATATTACCAGCGTTTTATGAAGAAACGCCACAAATTTCCTTTAA
CTGTAACAAAGACGGTGCCGTTTTGTTATTTTCTTTTAGTGGCACATTTG
Found at i:71469293 original size:9 final size:9
Alignment explanation
Indices: 71469279--71469625 Score: 168
Period size: 9 Copynumber: 38.6 Consensus size: 9
71469269 TTTAATTTAA
*
71469279 TACATAATT
1 TACATAACT
71469288 TACATAACT
1 TACATAACT
*
71469297 CACATAACT
1 TACATAACT
* *
71469306 TACAAAAGT
1 TACATAACT
* *
71469315 CACAT-ACA
1 TACATAACT
71469323 TACATAACT
1 TACATAACT
*
71469332 TA-ATAAAT
1 TACATAACT
*
71469340 GGTACATAGCT
1 --TACATAACT
*
71469351 TATATAACT
1 TACATAACT
71469360 TACATAA--
1 TACATAACT
71469367 TACATAACT
1 TACATAACT
**
71469376 TATTTAA--
1 TACATAACT
*
71469383 TACATTACT
1 TACATAACT
71469392 TACATAATAACT
1 TAC---ATAACT
*
71469404 TACATAGCT
1 TACATAACT
*
71469413 TATATAACT
1 TACATAACT
71469422 TACATAACT
1 TACATAACT
*
71469431 TATATAACT
1 TACATAACT
71469440 TACAT-AC-
1 TACATAACT
*
71469447 TCCATAACT
1 TACATAACT
*
71469456 TACATAATT
1 TACATAACT
*
71469465 TACTTAA--
1 TACATAACT
*
71469472 TATATAA-T
1 TACATAACT
* *
71469480 CAACATATATT
1 -TACATA-ACT
*
71469491 ATATCTTAACT
1 -TA-CATAACT
71469502 TACATAATAACT
1 TAC---ATAACT
*
71469514 TACATAGCT
1 TACATAACT
* *
71469523 TATAATAACC
1 TA-CATAACT
71469533 TACATAACT
1 TACATAACT
71469542 TACATAACT
1 TACATAACT
71469551 TACATAA--
1 TACATAACT
71469558 TACATAACT
1 TACATAACT
*
71469567 TACATATCT
1 TACATAACT
**
71469576 TTTAT-ACTAT
1 TACATAAC--T
71469586 ATACATAACT
1 -TACATAACT
*
71469596 TACATAATT
1 TACATAACT
*
71469605 TACTTAA--
1 TACATAACT
71469612 TACATAACT
1 TACATAACT
71469621 TACAT
1 TACAT
71469626 TGAGAAAAAT
Statistics
Matches: 251, Mismatches: 57, Indels: 60
0.68 0.15 0.16
Matches are distributed among these distances:
7 33 0.13
8 15 0.06
9 158 0.63
10 13 0.05
11 11 0.04
12 21 0.08
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.37
Consensus pattern (9 bp):
TACATAACT
Found at i:71469421 original size:18 final size:18
Alignment explanation
Indices: 71469349--71469625 Score: 116
Period size: 16 Copynumber: 15.4 Consensus size: 18
71469339 TGGTACATAG
* *
71469349 CTTATATAACTTACATAA
1 CTTACATAACTTATATAA
*
71469367 --TACATAACTTATTTAA
1 CTTACATAACTTATATAA
*
71469383 --TACATTACTTACATAATAA
1 CTTACATAACTT--AT-ATAA
*
71469402 CTTACATAGCTTATATAA
1 CTTACATAACTTATATAA
71469420 CTTACATAACTTATATAA
1 CTTACATAACTTATATAA
**
71469438 CTTACAT-AC-TCCATAA
1 CTTACATAACTTATATAA
*
71469454 CTTACATAATTTACT-TAA
1 CTTACATAACTTA-TATAA
* * *
71469472 -TATATAATCAACATATATTA
1 CT-TA-CAT-AACTTATATAA
*
71469492 --TATCTTAACTTACATAATAA
1 CTTA-CATAACTT--AT-ATAA
*
71469512 CTTACATAGCTTATAATAA
1 CTTACATAACTTAT-ATAA
* *
71469531 CCTACATAACTTACATAA
1 CTTACATAACTTATATAA
*
71469549 CTTACATAA--TACATAA
1 CTTACATAACTTATATAA
* *
71469565 CTTACATATCTTTTAT-A
1 CTTACATAACTTATATAA
*
71469582 CTATATACATAACTTACATAA
1 C--T-TACATAACTTATATAA
* * *
71469603 TTTACTTAA--TACATAA
1 CTTACATAACTTATATAA
71469619 CTTACAT
1 CTTACAT
71469626 TGAGAAAAAT
Statistics
Matches: 199, Mismatches: 37, Indels: 48
0.70 0.13 0.17
Matches are distributed among these distances:
16 61 0.31
17 10 0.05
18 61 0.31
19 30 0.15
20 20 0.10
21 15 0.08
22 2 0.01
ACGTcount: A:0.43, C:0.18, G:0.01, T:0.39
Consensus pattern (18 bp):
CTTACATAACTTATATAA
Found at i:71469529 original size:19 final size:19
Alignment explanation
Indices: 71469505--71469557 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
71469495 CTTAACTTAC
*
71469505 ATAATAACTTACATAGCTT
1 ATAATAACTTACATAACTT
*
71469524 ATAATAACCTACATAACTT
1 ATAATAACTTACATAACTT
*
71469543 A-CATAACTTACATAA
1 ATAATAACTTACATAA
71469558 TACATAACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 12 0.40
19 18 0.60
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (19 bp):
ATAATAACTTACATAACTT
Found at i:71469567 original size:25 final size:25
Alignment explanation
Indices: 71469342--71469625 Score: 109
Period size: 25 Copynumber: 11.6 Consensus size: 25
71469332 TAATAAATGG
* *
71469342 TACATAGCTTATATAACTTACATAA
1 TACATAACTTACATAACTTACATAA
** *
71469367 TACATAACTTATTTAATACATTACTTACA
1 TACATAACTTACAT-A-AC-TTACATA-A
* *
71469396 TA-ATAACTTACATAGCTTATATAA
1 TACATAACTTACATAACTTACATAA
* *
71469420 CTTACATAACTTATATAACTTACATAC
1 --TACATAACTTACATAACTTACATAA
* * *
71469447 TCCATAACTTACATAATTTACTTAA
1 TACATAACTTACATAACTTACATAA
* *
71469472 TATATAA-TCAACATATA-TT--AT-A
1 TACATAACT-TACATA-ACTTACATAA
* *
71469494 T-CTTAACTTACATAA-TAAC-T--
1 TACATAACTTACATAACTTACATAA
* * *
71469514 TACATAGCTTATAATAACCTACATAA
1 TACATAACTTA-CATAACTTACATAA
71469540 CTTACATAACTTACATAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
* **
71469565 CTTACATATCTTTTAT-AC-T--AT-A
1 --TACATAACTTACATAACTTACATAA
* *
71469587 TACATAACTTACATAATTTACTTAA
1 TACATAACTTACATAACTTACATAA
71469612 TACATAACTTACAT
1 TACATAACTTACAT
71469626 TGAGAAAAAT
Statistics
Matches: 193, Mismatches: 40, Indels: 52
0.68 0.14 0.18
Matches are distributed among these distances:
20 14 0.07
21 17 0.09
22 9 0.05
23 5 0.03
24 5 0.03
25 85 0.44
26 5 0.03
27 25 0.13
28 25 0.13
29 3 0.02
ACGTcount: A:0.43, C:0.18, G:0.01, T:0.38
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:71474680 original size:21 final size:21
Alignment explanation
Indices: 71474656--71474724 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
71474646 CAGCAACTTA
* *
71474656 AAGCAGAGGCGGCAGTGAGGG
1 AAGCAGAGGCCGCAGTGAGAG
** *
71474677 AAGCAGAGGCTACAGCGAGAG
1 AAGCAGAGGCCGCAGTGAGAG
*
71474698 AAGCAGAGGCCGCAGTAAGAG
1 AAGCAGAGGCCGCAGTGAGAG
71474719 AAGCAG
1 AAGCAG
71474725 CGATAGAAGC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.36, C:0.17, G:0.42, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGTGAGAG
Found at i:71475258 original size:85 final size:85
Alignment explanation
Indices: 71475169--71475377 Score: 257
Period size: 85 Copynumber: 2.5 Consensus size: 85
71475159 GTTTGTGAAA
* *
71475169 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGACC-AAGCGCCGCTATAGAAGAT
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-ACCTAAGCGCCGCTAAAGAACAT
* *
71475231 TA-CTTTTAGCGGCGTTT-TCTTCC
63 GATC-TTTAGCAGCGTTTAT-TTCC
* * *
71475254 TAAGCGCCACTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGTGCCGCTAAAGAACATGAT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTACCTAAGCGCCGCTAAAGAACATGAT
71475319 CTTTAGCAGCGTTTATTTCC
66 CTTTAGCAGCGTTTATTTCC
* *
71475339 TTACCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
71475378 TTTCTGTAAG
Statistics
Matches: 109, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
84 3 0.03
85 103 0.94
86 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (85 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTACCTAAGCGCCGCTAAAGAACATGAT
CTTTAGCAGCGTTTATTTCC
Found at i:71475282 original size:43 final size:42
Alignment explanation
Indices: 71475169--71475378 Score: 257
Period size: 42 Copynumber: 5.0 Consensus size: 42
71475159 GTTTGTGAAA
*
71475169 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGACC
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TCC
* * *
71475212 -AAGCGCCGCTATAGAAGATTA-CTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCC
*
71475254 TAAGCGCCACTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
* *
71475296 TAAGTGCCGCTAAAGAACATGATCTTTAGCAGCGTTTATTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCC
* *
71475339 TTACCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT
71475379 TTCTGTAAGC
Statistics
Matches: 148, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
41 1 0.01
42 76 0.51
43 70 0.47
44 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
Found at i:71477898 original size:159 final size:159
Alignment explanation
Indices: 71477609--71477925 Score: 609
Period size: 159 Copynumber: 2.0 Consensus size: 159
71477599 CTCCTACTAT
*
71477609 TTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTAACTAGGTT
1 TTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTAACTAGGTC
71477674 CATTTCATGCCTACCCTTGATCCAACTCAATCGAACATTCGTGCCATTTTCGCATGGCTTAAAGT
66 CATTTCATGCCTACCCTTGATCCAACTCAATCGAACATTCGTGCCATTTTCGCATGGCTTAAAGT
71477739 TTACATGCCA-AAGTTCAAACACAACGTAA
131 TTACATGCCATAA-TTCAAACACAACGTAA
71477768 TTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTAACTAGGTC
1 TTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTAACTAGGTC
71477833 CATTTCATGCCTACCCTTGATCCAACTCAATCGAACATTCGTGCCATTTTCGCATGGCTTAAAGT
66 CATTTCATGCCTACCCTTGATCCAACTCAATCGAACATTCGTGCCATTTTCGCATGGCTTAAAGT
71477898 TTACATGCCATAATTCAAACACAACGTA
131 TTACATGCCATAATTCAAACACAACGTA
71477926 CTAGCTTATA
Statistics
Matches: 156, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
159 154 0.99
160 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (159 bp):
TTTTAGTGATTTTTCAATCTCATGACACTGCTGCTGCCAGCATCTGTTACGAAAGTAACTAGGTC
CATTTCATGCCTACCCTTGATCCAACTCAATCGAACATTCGTGCCATTTTCGCATGGCTTAAAGT
TTACATGCCATAATTCAAACACAACGTAA
Found at i:71478556 original size:27 final size:27
Alignment explanation
Indices: 71478526--71478703 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
71478516 ATATCGAGTC
* * * *
71478526 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
71478553 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71478580 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
*** * *
71478608 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
71478635 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
71478662 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
71478689 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71478704 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:71478665 original size:82 final size:81
Alignment explanation
Indices: 71478547--71478702 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
71478537 TGCTATATAA
*
71478547 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
71478612 CACTTAGTGCCGTATGG
65 CACTTAGTGCCGTATGG
* * **
71478629 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
71478693 CACTTAGTGC
65 CACTTAGTGC
71478703 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGTATGG
Found at i:71485646 original size:18 final size:19
Alignment explanation
Indices: 71485606--71485646 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
71485596 CATGTGGCCT
*
71485606 GCCCGTGTGGTCCCACACA
1 GCCCATGTGGTCCCACACA
*
71485625 -CCCATGTGG-CCCACATA
1 GCCCATGTGGTCCCACACA
71485642 GCCCA
1 GCCCA
71485647 AATTGGCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.20, C:0.44, G:0.22, T:0.15
Consensus pattern (19 bp):
GCCCATGTGGTCCCACACA
Done.