Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 233 of 313
Found at i:71818473 original size:24 final size:24
Alignment explanation
Indices: 71818351--71818472 Score: 181
Period size: 24 Copynumber: 5.0 Consensus size: 24
71818341 AAGGCTGTCA
* *
71818351 GGAGAAGATTTAGGCGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
71818375 GGAGATGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
71818399 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
71818423 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAGGATTTAGGAGCTGATAAG
*
71818447 GGAGACGATTTAGGAGCTGATCAAG
1 GGAGAGGATTTAGGAGCTGAT-AAG
71818472 G
1 G
71818473 ATCAGGAGTT
Statistics
Matches: 89, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
24 86 0.97
25 3 0.03
ACGTcount: A:0.34, C:0.06, G:0.39, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:71825580 original size:15 final size:15
Alignment explanation
Indices: 71825560--71825590 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
71825550 CAGAGTTGGA
71825560 CAGAATCCATGACGT
1 CAGAATCCATGACGT
71825575 CAGAATCCATGACGT
1 CAGAATCCATGACGT
71825590 C
1 C
71825591 TTTCATGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.19
Consensus pattern (15 bp):
CAGAATCCATGACGT
Found at i:71826287 original size:24 final size:24
Alignment explanation
Indices: 71826260--71826357 Score: 151
Period size: 24 Copynumber: 4.0 Consensus size: 24
71826250 AAGGCTGTCA
71826260 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
71826284 GGAGATGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
71826308 GGAGAGGATTTAGGAGCTGATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
71826332 GGAGACGATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
71826357 G
1 G
71826358 AGCAGGAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 65 0.96
25 3 0.04
ACGTcount: A:0.35, C:0.06, G:0.38, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:71826358 original size:12 final size:12
Alignment explanation
Indices: 71826266--71826360 Score: 61
Period size: 12 Copynumber: 7.9 Consensus size: 12
71826256 GTCAGGAGAA
*
71826266 GATTTAGGAGCT
1 GATTAAGGAGCT
*
71826278 GA-TAAGGGAGAT
1 GATTAA-GGAGCT
*
71826290 GATTTAGGAGCT
1 GATTAAGGAGCT
**
71826302 GA-TAAGGGAGAG
1 GATTAA-GGAGCT
*
71826314 GATTTAGGAGCT
1 GATTAAGGAGCT
*
71826326 GATAAAGGAGAC-
1 GATTAAGGAG-CT
*
71826338 GATTTAGGAGCT
1 GATTAAGGAGCT
*
71826350 GATCAAGGAGC
1 GATTAAGGAGC
71826361 AGGAGTTGGC
Statistics
Matches: 61, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
11 5 0.08
12 51 0.84
13 5 0.08
ACGTcount: A:0.34, C:0.07, G:0.37, T:0.22
Consensus pattern (12 bp):
GATTAAGGAGCT
Found at i:71827994 original size:43 final size:43
Alignment explanation
Indices: 71827939--71828023 Score: 161
Period size: 43 Copynumber: 2.0 Consensus size: 43
71827929 ATATGTTTAT
*
71827939 TGATGTTTCATGTATTTTGAAATGGGCCTATGGGCCATACTGA
1 TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGA
71827982 TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
1 TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
71828024 TTATCTGAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.36
Consensus pattern (43 bp):
TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGA
Found at i:71828097 original size:33 final size:34
Alignment explanation
Indices: 71828020--71828100 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
71828010 TATGGGCCAT
*
71828020 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * ** *
71828054 AATGTAATCTGAA-AA-GGGCTCTGGCCTAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
71828087 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
71828101 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.31
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:71830198 original size:17 final size:17
Alignment explanation
Indices: 71830178--71830249 Score: 57
Period size: 17 Copynumber: 4.5 Consensus size: 17
71830168 ATAAAAATAG
71830178 TATATATTATTTTTATT
1 TATATATTATTTTTATT
*
71830195 TATATGTTA-TTTTA--
1 TATATATTATTTTTATT
* *
71830209 T-CATATTATTTATATT
1 TATATATTATTTTTATT
71830225 TCAT-TA-TATATTTTATT
1 T-ATATATTAT-TTTTATT
71830242 TATATATT
1 TATATATT
71830250 TTATTACATA
Statistics
Matches: 41, Mismatches: 6, Indels: 15
0.66 0.10 0.24
Matches are distributed among these distances:
13 5 0.12
14 5 0.12
16 11 0.27
17 19 0.46
18 1 0.02
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (17 bp):
TATATATTATTTTTATT
Found at i:71830267 original size:17 final size:17
Alignment explanation
Indices: 71830245--71830277 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
71830235 TTTTATTTAT
71830245 ATATTTTATTACATATC
1 ATATTTTATTACATATC
*
71830262 ATATTTTATTATATAT
1 ATATTTTATTACATAT
71830278 TATTCCCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTATTACATATC
Found at i:71830278 original size:12 final size:12
Alignment explanation
Indices: 71830188--71830260 Score: 69
Period size: 12 Copynumber: 6.1 Consensus size: 12
71830178 TATATATTAT
71830188 TTTTATT-TATA
1 TTTTATTATATA
* *
71830199 TGTTATTTTATCA
1 TTTTATTATAT-A
*
71830212 TATTATT-TATA
1 TTTTATTATATA
*
71830223 TTTCATTATATA
1 TTTTATTATATA
71830235 TTTTATTTATATA
1 TTTTA-TTATATA
*
71830248 TTTTATTACATA
1 TTTTATTATATA
71830260 T
1 T
71830261 CATATTTTAT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
11 12 0.23
12 21 0.40
13 19 0.37
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (12 bp):
TTTTATTATATA
Found at i:71835195 original size:3 final size:3
Alignment explanation
Indices: 71835187--71835219 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
71835177 CTTGTTCTTA
71835187 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
71835220 TGTGTATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:71852487 original size:63 final size:63
Alignment explanation
Indices: 71852386--71852511 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
71852376 TAAGTGAACA
*
71852386 CAGAAGTTGATTACGATATCCAATCCTTGTGGAATCGACCCTACTACCACTCTTTACTACAAT
1 CAGAAGTTGATTACGATATCCAATCCCTGTGGAATCGACCCTACTACCACTCTTTACTACAAT
* * *
71852449 CAGAAGTTGGTTGCGATATCCAATCCCTGTGGACTCGACCCTACTACCACTCTTTACTACAAT
1 CAGAAGTTGATTACGATATCCAATCCCTGTGGAATCGACCCTACTACCACTCTTTACTACAAT
71852512 TTAGAATTGT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (63 bp):
CAGAAGTTGATTACGATATCCAATCCCTGTGGAATCGACCCTACTACCACTCTTTACTACAAT
Found at i:71865514 original size:80 final size:80
Alignment explanation
Indices: 71865411--71865569 Score: 309
Period size: 80 Copynumber: 2.0 Consensus size: 80
71865401 AATTCTGAAA
71865411 ATTTTATGGATGGAAGATATACGAGTCTATATTCAGGGAAAATTAACGGCTAGTGATTTGGAGTT
1 ATTTTATGGATGGAAGATATACGAGTCTATATTCAGGGAAAATTAACGGCTAGTGATTTGGAGTT
71865476 TTGTAGCTCCAGTTT
66 TTGTAGCTCCAGTTT
*
71865491 ATTTTATGGATGGAAGATATACGAGTCTGTATTCAGGGAAAATTAACGGCTAGTGATTTGGAGTT
1 ATTTTATGGATGGAAGATATACGAGTCTATATTCAGGGAAAATTAACGGCTAGTGATTTGGAGTT
71865556 TTGTAGCTCCAGTT
66 TTGTAGCTCCAGTT
71865570 ATAAACAATT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (80 bp):
ATTTTATGGATGGAAGATATACGAGTCTATATTCAGGGAAAATTAACGGCTAGTGATTTGGAGTT
TTGTAGCTCCAGTTT
Found at i:71866135 original size:27 final size:27
Alignment explanation
Indices: 71866105--71866255 Score: 140
Period size: 27 Copynumber: 5.6 Consensus size: 27
71866095 AAATTGTACA
* *
71866105 GCACTAAGGGTGTGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
71866132 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
* * **
71866159 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
* * *
71866186 GCACTAAGAGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* * **
71866214 GCACTAAGTGTGCGATTTGATTACGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
71866241 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
71866256 GATGATTATA
Statistics
Matches: 100, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 79 0.79
28 21 0.21
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:71866218 original size:82 final size:81
Alignment explanation
Indices: 71866105--71866255 Score: 203
Period size: 82 Copynumber: 1.9 Consensus size: 81
71866095 AAATTGTACA
* * * * * *
71866105 GCACTAAGGGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAGGCACTAAGTGT
71866170 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** * *
71866186 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGCGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAGGCACTAAGTG
71866251 TGCGA
65 TGCGA
71866256 GATGATTATA
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
81 13 0.22
82 46 0.78
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71866242 original size:55 final size:54
Alignment explanation
Indices: 71866132--71866281 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
71866122 TGACTATGTT
* * * *
71866132 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGAGTGCGAGATGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * **
71866186 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGCG
1 GCACTAAGAGTGCGAG-ATGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* * *
71866241 GCACTAAGTGTGCGAGATGATTATATAGCACTGAGTGTGCG
1 GCACTAAGAGTGCGAGATGACTATATAGCACTAAGTGTGCG
71866282 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 36 0.45
55 44 0.55
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (54 bp):
GCACTAAGAGTGCGAGATGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:71866271 original size:27 final size:27
Alignment explanation
Indices: 71866104--71866281 Score: 126
Period size: 27 Copynumber: 6.6 Consensus size: 27
71866094 TAAATTGTAC
* * **
71866104 AGCACTAAGGGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGAGATGACTATGT
* * *
71866131 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGATGACTATGT
* *
71866157 ATGCACTAAGTGTGCGA-ATTGACCATGC
1 A-GCACTAAGTGTGCGAGA-TGACTATGT
* * *
71866185 GGCACTAAGAGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGAG-ATGACTATGT
** * * *
71866213 AGCACTAAGTGTGCGATTTGATTACGC
1 AGCACTAAGTGTGCGAGATGACTATGT
* * *
71866240 GGCACTAAGTGTGCGAGATGATTATAT
1 AGCACTAAGTGTGCGAGATGACTATGT
*
71866267 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71866282 GGCTCAATAT
Statistics
Matches: 117, Mismatches: 29, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 95 0.81
28 21 0.18
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGATGACTATGT
Found at i:71875202 original size:19 final size:19
Alignment explanation
Indices: 71875178--71875218 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
71875168 GTATTAAATG
71875178 GATTGAATTTTTCTATTTA
1 GATTGAATTTTTCTATTTA
71875197 GATTGAATTTTTCTATTTA
1 GATTGAATTTTTCTATTTA
71875216 GAT
1 GAT
71875219 CAAGATAGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.56
Consensus pattern (19 bp):
GATTGAATTTTTCTATTTA
Found at i:71875346 original size:22 final size:21
Alignment explanation
Indices: 71875320--71875364 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
71875310 GTATGTACGG
71875320 ATTATTATGTT-TATGTTATTTA
1 ATTA-TATGTTATATG-TATTTA
71875342 ATTATATGTTAATATGTATTTA
1 ATTATATGTT-ATATGTATTTA
71875364 A
1 A
71875365 AATTCTATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 6 0.29
22 11 0.52
23 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (21 bp):
ATTATATGTTATATGTATTTA
Found at i:71876827 original size:20 final size:20
Alignment explanation
Indices: 71876790--71876827 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
71876780 TATGTAGTAA
* *
71876790 AAATTTTCTAACTTTTTCTT
1 AAATTTTCTAAATGTTTCTT
71876810 AAATTTTCTAAATGTTTC
1 AAATTTTCTAAATGTTTC
71876828 CAATTTAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.03, T:0.55
Consensus pattern (20 bp):
AAATTTTCTAAATGTTTCTT
Found at i:71877161 original size:28 final size:28
Alignment explanation
Indices: 71877070--71877177 Score: 130
Period size: 28 Copynumber: 3.9 Consensus size: 28
71877060 ATTGGAGTGC
* *
71877070 GCCACGAAGGCATT-CATTTCCATAGATT
1 GCCACAAAGGC-TTCCATTTTCATAGATT
71877098 GCCA-AGAAGGCTTCCATTTTCATAGATT
1 GCCACA-AAGGCTTCCATTTTCATAGATT
* *
71877126 GCCACAAAGGCTTCCGTTTTCATATATT
1 GCCACAAAGGCTTCCATTTTCATAGATT
* *
71877154 GCCCCAAAGACTTCCATTTTCATA
1 GCCACAAAGGCTTCCATTTTCATA
71877178 CTTTTTCACG
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 67 0.96
29 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (28 bp):
GCCACAAAGGCTTCCATTTTCATAGATT
Found at i:71883491 original size:27 final size:28
Alignment explanation
Indices: 71883435--71883521 Score: 122
Period size: 28 Copynumber: 3.1 Consensus size: 28
71883425 CGTCCCATTC
* * *
71883435 CATAGATCGCCACGAAGACTTCAATTTT
1 CATAGATTGCCACAAAGGCTTCAATTTT
*
71883463 CATAGATTGCCA-AAAGGCTTCCATTTT
1 CATAGATTGCCACAAAGGCTTCAATTTT
*
71883490 CATAGATTTCCACAAAGGCTTCAATTTT
1 CATAGATTGCCACAAAGGCTTCAATTTT
71883518 CATA
1 CATA
71883522 CGTTTTTCTC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.44
28 29 0.56
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (28 bp):
CATAGATTGCCACAAAGGCTTCAATTTT
Found at i:71887012 original size:50 final size:50
Alignment explanation
Indices: 71886950--71887068 Score: 152
Period size: 50 Copynumber: 2.4 Consensus size: 50
71886940 GTCACGTATC
* *
71886950 TAGTACTATGTGCAGGCTACAACGTGTATCGGAAT-G-ATGGGTCGCATGTG
1 TAGTACTATGTGCAGGCTACAACGTGTATCAG-ATGGAAT-GGTCACATGTG
* *
71887000 TAGTACTATGTGCAGGCTACTATGTGTATCAGATGGAAATGGTCACATGTG
1 TAGTACTATGTGCAGGCTACAACGTGTATCAGATGG-AATGGTCACATGTG
*
71887051 TAGTACAATGTGCAGGCT
1 TAGTACTATGTGCAGGCT
71887069 GCTATGTGAA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
49 2 0.03
50 30 0.49
51 27 0.44
52 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (50 bp):
TAGTACTATGTGCAGGCTACAACGTGTATCAGATGGAATGGTCACATGTG
Found at i:71890742 original size:22 final size:22
Alignment explanation
Indices: 71890695--71890743 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
71890685 GGTAATGAAC
*
71890695 TATTATTGGTAATAGGTAGAAT
1 TATTATTGGTAATAGGTAGAAG
* * *
71890717 TATTATTGGTCATATGTATAAG
1 TATTATTGGTAATAGGTAGAAG
71890739 TATTA
1 TATTA
71890744 GATGTTTTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.02, G:0.18, T:0.45
Consensus pattern (22 bp):
TATTATTGGTAATAGGTAGAAG
Found at i:71895535 original size:17 final size:18
Alignment explanation
Indices: 71895513--71895548 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
71895503 TTTATTTAAT
*
71895513 TAATTAATACAA-CTAAA
1 TAATTAACACAACCTAAA
71895530 TAATTAACACAACCTAAA
1 TAATTAACACAACCTAAA
71895548 T
1 T
71895549 GTAACACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.56, C:0.17, G:0.00, T:0.28
Consensus pattern (18 bp):
TAATTAACACAACCTAAA
Found at i:71896818 original size:15 final size:16
Alignment explanation
Indices: 71896794--71896837 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
71896784 GCATAGTGGT
*
71896794 CACATGTCATAA-AAA
1 CACATATCATAATAAA
*
71896809 CACATATCATAATACA
1 CACATATCATAATAAA
71896825 CACATATTCATAA
1 CACATA-TCATAA
71896838 GTTAAGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.44
16 8 0.32
17 6 0.24
ACGTcount: A:0.50, C:0.23, G:0.02, T:0.25
Consensus pattern (16 bp):
CACATATCATAATAAA
Found at i:71896861 original size:67 final size:67
Alignment explanation
Indices: 71896775--71896918 Score: 216
Period size: 67 Copynumber: 2.1 Consensus size: 67
71896765 AACATTTTAT
* * * * *
71896775 AGATAAATTGCATAGTGGTCACATGTCATAAAAACACATATCATAATACACACATATTCATAAGT
1 AGATAATTTGCATAATGGTCACATGTCATAAAAACACATATCACAATACACACAAACTCATAAGT
71896840 TA
66 TA
* * *
71896842 AGATAATTTGCATAATGGTCGCATGTCATATAAACACATATCACAATACACACAAACTCATAATT
1 AGATAATTTGCATAATGGTCACATGTCATAAAAACACATATCACAATACACACAAACTCATAAGT
71896907 TA
66 TA
71896909 AGATAATTTG
1 AGATAATTTG
71896919 GCACTTGAGC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (67 bp):
AGATAATTTGCATAATGGTCACATGTCATAAAAACACATATCACAATACACACAAACTCATAAGT
TA
Found at i:71899811 original size:17 final size:17
Alignment explanation
Indices: 71899778--71899811 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
71899768 AGTAACACTA
*
71899778 AAAATGCAAGGATAATG
1 AAAATGCAAGGACAATG
*
71899795 AAAATGCAATGACAATG
1 AAAATGCAAGGACAATG
71899812 TATACTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.09, G:0.21, T:0.18
Consensus pattern (17 bp):
AAAATGCAAGGACAATG
Found at i:71900279 original size:18 final size:18
Alignment explanation
Indices: 71900258--71900321 Score: 74
Period size: 18 Copynumber: 3.4 Consensus size: 18
71900248 CTTTCTCATT
*
71900258 TTCAATAACTTCCTCTTC
1 TTCAACAACTTCCTCTTC
71900276 TTCAGAAACAACTTCCTCTTC
1 TTC---AACAACTTCCTCTTC
*
71900297 TGCAACAACTTCCTCTTC
1 TTCAACAACTTCCTCTTC
*
71900315 TGCAACA
1 TTCAACA
71900322 TCAACTTCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
18 25 0.61
21 16 0.39
ACGTcount: A:0.27, C:0.34, G:0.05, T:0.34
Consensus pattern (18 bp):
TTCAACAACTTCCTCTTC
Found at i:71900328 original size:21 final size:19
Alignment explanation
Indices: 71900264--71900331 Score: 84
Period size: 21 Copynumber: 3.4 Consensus size: 19
71900254 CATTTTCAAT
*
71900264 AACTTCCTCTTCTTCAGAAAC
1 AACTTCCTCTTCTGC--AAAC
71900285 AACTTCCTCTTCTGC-AAC
1 AACTTCCTCTTCTGCAAAC
71900303 AACTTCCTCTTCTGCAACATC
1 AACTTCCTCTTCTGCAA-A-C
71900324 AACTTCCT
1 AACTTCCT
71900332 TCTCAACAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
18 18 0.42
19 1 0.02
20 1 0.02
21 23 0.53
ACGTcount: A:0.25, C:0.37, G:0.04, T:0.34
Consensus pattern (19 bp):
AACTTCCTCTTCTGCAAAC
Found at i:71900341 original size:15 final size:18
Alignment explanation
Indices: 71900282--71900321 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
71900272 CTTCTTCAGA
71900282 AACAACTTCCTCTTCTGC
1 AACAACTTCCTCTTCTGC
71900300 AACAACTTCCTCTTCTGC
1 AACAACTTCCTCTTCTGC
71900318 AACA
1 AACA
71900322 TCAACTTCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.28, C:0.38, G:0.05, T:0.30
Consensus pattern (18 bp):
AACAACTTCCTCTTCTGC
Found at i:71900342 original size:39 final size:39
Alignment explanation
Indices: 71900264--71900343 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 39
71900254 CATTTTCAAT
* **
71900264 AACTTCCTCTTCTTCAGAAACAACTTCCTCTTCTGCAAC
1 AACTTCCTCTTCTGCAGAAACAACTTCCTCTTCAACAAC
*
71900303 AACTTCCTCTTCTGCA-ACATCAACTTCCT-TCTCAACAAC
1 AACTTCCTCTTCTGCAGA-AACAACTTCCTCT-TCAACAAC
71900342 AA
1 AA
71900344 TGTCTTCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.06
39 33 0.94
ACGTcount: A:0.29, C:0.36, G:0.04, T:0.31
Consensus pattern (39 bp):
AACTTCCTCTTCTGCAGAAACAACTTCCTCTTCAACAAC
Found at i:71907650 original size:100 final size:102
Alignment explanation
Indices: 71907465--71907651 Score: 243
Period size: 100 Copynumber: 1.8 Consensus size: 102
71907455 GAGATCCCAT
* * **
71907465 GTAAGACCATGTCTGGGACATGGCATTAGCATCATTGAGGTTATGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATGAGCACCA-T-A-G-TATGAGAACTCCCATGTAAGACCA
* *
71907530 TGTCTGGGACATAGCGTTGGCACCGAGATGAGAGTTCCCCC
62 TATCTGGGACATAGCATTGGCACCGAGATGAGAGTTCCCCC
*
71907571 GTAAGACCATGTCTGGGACATGGCATGGGCACCA-A-TATGAGAACTCCCATGTAAGACCATATC
1 GTAAGACCATGTCTGGGACATGGCATGAGCACCATAGTATGAGAACTCCCATGTAAGACCATATC
* *
71907634 TGGGATATGGCATTGGCA
66 TGGGACATAGCATTGGCA
71907652 GTACAAGAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
100 40 0.56
103 1 0.01
106 31 0.43
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (102 bp):
GTAAGACCATGTCTGGGACATGGCATGAGCACCATAGTATGAGAACTCCCATGTAAGACCATATC
TGGGACATAGCATTGGCACCGAGATGAGAGTTCCCCC
Found at i:71907685 original size:49 final size:50
Alignment explanation
Indices: 71907459--71907700 Score: 213
Period size: 50 Copynumber: 4.7 Consensus size: 50
71907449 GGGAAAGAGA
* * **
71907459 TCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---A---TATGAGAAC
* * * * **
71907515 TCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCGAGATGAGAGT
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAAC
** *
71907565 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAAC
* * **
71907615 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTACA-A-GA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA-ATATGAGAAC
*
71907663 ATCTCATGTAAGACCATGTCTGGGACATGG-ATTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
71907701 TGTTATTATC
Statistics
Matches: 157, Mismatches: 26, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
48 4 0.03
49 34 0.22
50 82 0.52
51 1 0.01
53 1 0.01
56 35 0.22
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAATATGAGAAC
Found at i:71912537 original size:17 final size:18
Alignment explanation
Indices: 71912512--71912554 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
71912502 CATAAAGACT
71912512 CAAACTTAGACCTTTTTA
1 CAAACTTAGACCTTTTTA
*
71912530 CAAA-TTAGTCCTTTTT-
1 CAAACTTAGACCTTTTTA
71912546 CTAAACTTA
1 C-AAACTTA
71912555 TAAGTTTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 1 0.05
17 14 0.64
18 7 0.32
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.42
Consensus pattern (18 bp):
CAAACTTAGACCTTTTTA
Found at i:71917699 original size:41 final size:41
Alignment explanation
Indices: 71917634--71917733 Score: 137
Period size: 41 Copynumber: 2.4 Consensus size: 41
71917624 TACGGATACT
* * *
71917634 CCACAGCTCGTGTGAGTAGCATCGTGTAGCTATGTTTTAAC
1 CCACAGCTCGTGTGAGCAGCATCGTGTAGCTACGTTTCAAC
* * *
71917675 CCACAGCTTGTGTGAGCAGTATCGTGTAGCTACGTTTCGAC
1 CCACAGCTCGTGTGAGCAGCATCGTGTAGCTACGTTTCAAC
*
71917716 CGACAGCTCGTGTGAGCA
1 CCACAGCTCGTGTGAGCA
71917734 TTGTGATTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (41 bp):
CCACAGCTCGTGTGAGCAGCATCGTGTAGCTACGTTTCAAC
Found at i:71934677 original size:20 final size:21
Alignment explanation
Indices: 71934652--71934711 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 21
71934642 TTTAAGGATT
*
71934652 TATTTTGGTAAATTTTTAG-A
1 TATTTTGGTAAAGTTTTAGAA
*
71934672 TATTTTAGTAAAGTTTTAGAAA
1 TATTTTGGTAAAGTTTTAG-AA
*
71934694 TATTTTGATAAAAGTTTT
1 TATTTTGGT-AAAGTTTT
71934712 TCCTAATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 17 0.52
22 8 0.24
23 8 0.24
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (21 bp):
TATTTTGGTAAAGTTTTAGAA
Found at i:71936087 original size:22 final size:22
Alignment explanation
Indices: 71936061--71936115 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
71936051 ATACATGATT
*
71936061 AATTTTATTGAACTACCTATAA
1 AATTTTATTGAAATACCTATAA
* *
71936083 CATTTTATTCAAATACCTATAA
1 AATTTTATTGAAATACCTATAA
71936105 AATTTTATTGA
1 AATTTTATTGA
71936116 TAATTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.44
Consensus pattern (22 bp):
AATTTTATTGAAATACCTATAA
Found at i:71936333 original size:138 final size:138
Alignment explanation
Indices: 71936085--71936362 Score: 547
Period size: 138 Copynumber: 2.0 Consensus size: 138
71936075 ACCTATAACA
71936085 TTTTATTCAAATACCTATAAAATTTTATTGATAATTAATATCATTTATTAAAATACCTATAATAA
1 TTTTATTCAAATACCTATAAAATTTTATTGATAATTAATATCATTTATTAAAATACCTATAATAA
71936150 TTTTGGTTGTTATAAAGAAGAATGATTGTATTTCTAAGGAGAATCGAAGAATACACATATTATCA
66 TTTTGGTTGTTATAAAGAAGAATGATTGTATTTCTAAGGAGAATCGAAGAATACACATATTATCA
71936215 CCAAATAC
131 CCAAATAC
*
71936223 TTTTATTCAAATACCTATAAAATTTTATTGATAATTAATATCATTTATTAAAATATCTATAATAA
1 TTTTATTCAAATACCTATAAAATTTTATTGATAATTAATATCATTTATTAAAATACCTATAATAA
71936288 TTTTGGTTGTTATAAAGAAGAATGATTGTATTTCTAAGGAGAATCGAAGAATACACATATTATCA
66 TTTTGGTTGTTATAAAGAAGAATGATTGTATTTCTAAGGAGAATCGAAGAATACACATATTATCA
71936353 CCAAATAC
131 CCAAATAC
71936361 TT
1 TT
71936363 ATAAAGTATA
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 139 1.00
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (138 bp):
TTTTATTCAAATACCTATAAAATTTTATTGATAATTAATATCATTTATTAAAATACCTATAATAA
TTTTGGTTGTTATAAAGAAGAATGATTGTATTTCTAAGGAGAATCGAAGAATACACATATTATCA
CCAAATAC
Found at i:71940435 original size:22 final size:22
Alignment explanation
Indices: 71940405--71940447 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
71940395 ACAGCAAAAC
* *
71940405 AGGTTTTTAGCGGCGTTTTTTT
1 AGGTCTTTAGCGGCGCTTTTTT
71940427 AGGTCTTTAGCGGCGCTTTTT
1 AGGTCTTTAGCGGCGCTTTTT
71940448 AACTCCACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.14, G:0.28, T:0.49
Consensus pattern (22 bp):
AGGTCTTTAGCGGCGCTTTTTT
Found at i:71940592 original size:42 final size:42
Alignment explanation
Indices: 71940537--71940700 Score: 226
Period size: 42 Copynumber: 3.9 Consensus size: 42
71940527 GTGCTTACAT
71940537 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
*
71940579 AAAAAAACTCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
* *
71940621 AAAAAATCGCCGCTAAAGATCATGTTCTTTAGTGGCGCTT-G
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
** *
71940662 CTCAAAAATGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCGC
1 -AAAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGC
71940701 CTATTTCACA
Statistics
Matches: 110, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
41 3 0.03
42 107 0.97
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG
Found at i:71941139 original size:12 final size:12
Alignment explanation
Indices: 71941122--71941161 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
71941112 TTTTGAACCA
*
71941122 CTGCTTCTATTG
1 CTGCTTCTATCG
*
71941134 CTGCTTCTCTCG
1 CTGCTTCTATCG
*
71941146 CTGCTTCTCTCG
1 CTGCTTCTATCG
71941158 CTGC
1 CTGC
71941162 GGCCTCTGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.03, C:0.38, G:0.17, T:0.42
Consensus pattern (12 bp):
CTGCTTCTATCG
Found at i:71941172 original size:21 final size:21
Alignment explanation
Indices: 71941146--71941194 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
71941136 GCTTCTCTCG
*
71941146 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
71941167 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
71941188 CTGCTTC
1 CTGCTTC
71941195 CCTTACTGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.02, C:0.41, G:0.20, T:0.37
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:71942613 original size:15 final size:15
Alignment explanation
Indices: 71942593--71942625 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
71942583 ATAAAATTTT
*
71942593 ATAAATTTAATAGTA
1 ATAAATTTAATACTA
71942608 ATAAATTTAATACTA
1 ATAAATTTAATACTA
71942623 ATA
1 ATA
71942626 TAGAAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAAATTTAATACTA
Found at i:71944661 original size:40 final size:39
Alignment explanation
Indices: 71944616--71944694 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
71944606 TGGGGATTTA
* * *
71944616 GGGAAATTAAATCGGGGAAACTGGGGGAATAGGAATTGGG
1 GGGAAATGAAATCGGGG-AACTGGGGGAATACGAAATGGG
*
71944656 GGGAAATGAAATCGGGGAATTGGGGGAATACGAAATGGG
1 GGGAAATGAAATCGGGGAACTGGGGGAATACGAAATGGG
71944695 AAATTAGGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 19 0.54
40 16 0.46
ACGTcount: A:0.35, C:0.05, G:0.43, T:0.16
Consensus pattern (39 bp):
GGGAAATGAAATCGGGGAACTGGGGGAATACGAAATGGG
Found at i:71944690 original size:24 final size:23
Alignment explanation
Indices: 71944647--71944699 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
71944637 TGGGGGAATA
*
71944647 GGAATTGGGGGGAAATGAAATCGG
1 GGAATTGGGGGGAAACGAAAT-GG
71944671 GGAATT-GGGGGAATACGAAATGG
1 GGAATTGGGGGGAA-ACGAAATGG
*
71944694 GAAATT
1 GGAATT
71944700 AGGGAATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 14 0.54
24 12 0.46
ACGTcount: A:0.36, C:0.04, G:0.42, T:0.19
Consensus pattern (23 bp):
GGAATTGGGGGGAAACGAAATGG
Found at i:71945266 original size:22 final size:22
Alignment explanation
Indices: 71945232--71945284 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
71945222 ATAGGCCCCT
71945232 AACTTT-AACCCGTAACCTTTA
1 AACTTTAAACCCGTAACCTTTA
71945253 AACTTTAAACCCGTAACCTTTA
1 AACTTTAAACCCGTAACCTTTA
71945275 AACTTTAAAC
1 AACTTTAAAC
71945285 TCTTAAACCC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 6 0.19
22 25 0.81
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (22 bp):
AACTTTAAACCCGTAACCTTTA
Found at i:71945290 original size:15 final size:14
Alignment explanation
Indices: 71945245--71945321 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 14
71945235 TTTAACCCGT
71945245 AACCTTTAAACTTTA
1 AACC-TTAAACTTTA
* *
71945260 AACCCGTAACCTTTA
1 AA-CCTTAAACTTTA
*
71945275 AACTTTAAACTCTTA
1 AACCTTAAACT-TTA
* **
71945290 AACCCTAAACTACA
1 AACCTTAAACTTTA
* *
71945304 AACCTTACACTCTA
1 AACCTTAAACTTTA
71945318 AACC
1 AACC
71945322 CGTAACCTTA
Statistics
Matches: 47, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
14 21 0.45
15 24 0.51
16 2 0.04
ACGTcount: A:0.40, C:0.30, G:0.01, T:0.29
Consensus pattern (14 bp):
AACCTTAAACTTTA
Found at i:71945306 original size:29 final size:30
Alignment explanation
Indices: 71945248--71945326 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
71945238 AACCCGTAAC
* **
71945248 CTTTAAACT-TTAAACCCGTAACCTTTAAA
1 CTTTAAACTCTTAAACCCGTAAACTACAAA
71945277 CTTTAAACTCTTAAACCC-TAAACTACAAA
1 CTTTAAACTCTTAAACCCGTAAACTACAAA
* *
71945306 CCTTACACTC-TAAACCCGTAA
1 CTTTAAACTCTTAAACCCGTAA
71945327 CCTTACACTC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
28 7 0.16
29 28 0.65
30 8 0.19
ACGTcount: A:0.39, C:0.29, G:0.03, T:0.29
Consensus pattern (30 bp):
CTTTAAACTCTTAAACCCGTAAACTACAAA
Found at i:71946209 original size:77 final size:76
Alignment explanation
Indices: 71946097--71946242 Score: 170
Period size: 77 Copynumber: 1.9 Consensus size: 76
71946087 TTTTCTAATA
** *
71946097 AGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAG-TTAAGATATTTTTGCG
1 AGCGCCACTAATATAAGTATACATCAAAACCAAAACGACGCGTTTT-GCTTAAGATA-TTTTGCG
71946161 GCGTTTCAACGTC
64 GCGTTTCAACGTC
** * ** *
71946174 AGCGCCACTAAT-TGAAGTATACATTGAGACCAAAACGGTGCGTTTTGCTTCAGATATTTTGCGG
1 AGCGCCACTAATAT-AAGTATACATCAAAACCAAAACGACGCGTTTTGCTTAAGATATTTTGCGG
71946238 CGTTT
65 CGTTT
71946243 TACTATACGC
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
76 15 0.26
77 43 0.74
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.32
Consensus pattern (76 bp):
AGCGCCACTAATATAAGTATACATCAAAACCAAAACGACGCGTTTTGCTTAAGATATTTTGCGGC
GTTTCAACGTC
Found at i:71946367 original size:266 final size:266
Alignment explanation
Indices: 71945887--71946692 Score: 1231
Period size: 259 Copynumber: 3.1 Consensus size: 266
71945877 GTATTTTGCT
* * * * *
71945887 TTTTTGCGGCGTTTTAACGTTAGCACCACTAATTGAAGTATACATCAAGACCAAAACGGTGCATT
1 TTTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* *
71945952 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGTGCCACTAAATGTAACATAGCTTAAGACAAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
* * * * *
71946017 ACACTGCGTTTTGTTAAGATACGTTGCGGCGC-TT-GATCCAAAGTGCCGCTAAAGCTATTTTTT
131 ACACTGCGTTTTGTTAAGATACTTTGCGGCGCTTTGGCT-C-AAGCGCCGCTAATGCTATTCTTT
*
71946080 AACGGCGTTTTCTAATAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAG
194 AACGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAG
71946145 TTAAGATA
259 TTAAGATA
*
71946153 TTTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATTGAGACCAAAACGGTGCGTT
1 TTTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* * *
71946218 TTGCTTCAGATATTTTGCGGCGTTTTACTATACGCGCCACTAAATGTAACATAGCTTAAGACCAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
*
71946283 ACACTGCGTTTTGTTAAGATACTTTGCGGCGCTTTGGCTCAAGCGCCGCTAATGATATTCTTTAA
131 ACACTGCGTTTTGTTAAGATACTTTGCGGCGCTTTGGCTCAAGCGCCGCTAATGCTATTCTTTAA
71946348 CGGCGTTTTCTAGTAAGCGCCAC-----TAA-TATA-ATCAAAATTAAAACTACGCGTTTTAGTT
196 CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTT
71946406 AAGATA
261 AAGATA
* * *
71946412 TTTTTGCGGCGTTTTAACGTCAACGCCACTAATTAAAGTATACATCGAGACCAAAACGGTGCGTT
1 TTTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
* * *
71946477 TTGGTTCAGATTTTTTACGGCTTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
66 TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
*
71946542 ACACTGTGTTTTGTTAAGATA-TGTTGCGGCGCTTTGGCTCAAGCGCCGCTAAAT-CTATTCTTT
131 ACACTGCGTTTTGTTAAGATACT-TTGCGGCGCTTTGGCTCAAGCGCCGCT-AATGCTATTCTTT
* *
71946605 AACAGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGTGTTTTAG
194 AACGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAG
*
71946670 TAAAGATA
259 TTAAGATA
71946678 -TTTTGCGGCGCTTTC
1 TTTTTGCGGCG-TTTC
71946693 TACGAAACAC
Statistics
Matches: 494, Mismatches: 34, Indels: 24
0.89 0.06 0.04
Matches are distributed among these distances:
258 1 0.00
259 233 0.47
260 7 0.01
261 3 0.01
264 3 0.01
265 14 0.03
266 228 0.46
267 3 0.01
268 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (266 bp):
TTTTTGCGGCGTTTCAACGTCAGCGCCACTAATTGAAGTATACATCGAGACCAAAACGGTGCGTT
TTGGTTCAGATATTTTGCGGCGTTTTCCTATAAGCGCCACTAAATGTAACATAGCTTAAGACCAA
ACACTGCGTTTTGTTAAGATACTTTGCGGCGCTTTGGCTCAAGCGCCGCTAATGCTATTCTTTAA
CGGCGTTTTCTAGTAAGCGCCACTAATATAAGTATACATCAAAATTAAAACTACGCGTTTTAGTT
AAGATA
Found at i:71946878 original size:113 final size:114
Alignment explanation
Indices: 71946736--71946987 Score: 312
Period size: 113 Copynumber: 2.2 Consensus size: 114
71946726 GCATATCACA
* * * **
71946736 AAGCGCCACTAAATCTAGTATACATCAACACCAAAAACGATGCGTTTTGGTTAAGATATTTTACG
1 AAGCGCCACTAATTCTAGCATACATCAACACCAAAAACGATGCGTTTTGGTTAAGAGAAATTACG
* *
71946801 GCGC-ATATCGCAAAACGCCGCTAAGACGCTTTTA-CGGCGT-TTTTTGAG
66 ACGCGATATCGCAAAACGCCGCTAAGACAC-TTTAGCGGCGTGTTTTT-AG
* * *
71946849 AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGATGCGTTTTGGTTAGGAGAAATTACG
1 AAGCGCCACTAATTCTAGCATACATCAACACCAAAAACGATGCGTTTTGGTTAAGAGAAATTACG
* * * * * *
71946914 ACGCGTTGTTGTAAAACGCTGCTAAGACACTTTAGCGGCGTGTTTTTTG
66 ACGCGATATCGCAAAACGCCGCTAAGACACTTTAGCGGCGTGTTTTTAG
*
71946963 AAGCGCCACTAATTCTTGCATACAT
1 AAGCGCCACTAATTCTAGCATACAT
71946988 AAAGACGAAA
Statistics
Matches: 119, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
113 65 0.55
114 49 0.41
115 5 0.04
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (114 bp):
AAGCGCCACTAATTCTAGCATACATCAACACCAAAAACGATGCGTTTTGGTTAAGAGAAATTACG
ACGCGATATCGCAAAACGCCGCTAAGACACTTTAGCGGCGTGTTTTTAG
Found at i:71946986 original size:114 final size:112
Alignment explanation
Indices: 71946736--71947019 Score: 311
Period size: 113 Copynumber: 2.5 Consensus size: 112
71946726 GCATATCACA
* * * * **
71946736 AAGCGCCACTAAATCTAGTATACATCAACACCAAAAACGATGCGTTTTGGTTAAGATATTTTACG
1 AAGCGCCACTAATTCTAGCATACATCAACA-CAAAAACGATGCGTTTTGGTTAGGAGAAATTACG
* *
71946801 GCGCATATCGCAAAACGCCGCTAAGACGCTTTTACGGCGTTTTTTGAG
65 ACGCATATCGCAAAACGCCGCTAAGACACTTTTACGGCGTTTTTTGAG
*
71946849 AAGCGCCACTAATTCTAGGATACATCAACACTAAAAACGATGCGTTTTGGTTAGGAGAAATTACG
1 AAGCGCCACTAATTCTAGCATACATCAACAC-AAAAACGATGCGTTTTGGTTAGGAGAAATTACG
* * * * * *
71946914 ACGCGTTGTTGTAAAACGCTGCTAAGACAC-TTTAGCGGCGTGTTTTT-TG
65 ACGC-ATATCGCAAAACGCCGCTAAGACACTTTTA-CGGCGT-TTTTTGAG
* * * * * * *
71946963 AAGCGCCACTAATTCTTGCATACATAAAGACGAAAACGTTGCATTTTGGATAGGAGA
1 AAGCGCCACTAATTCTAGCATACATCAACACAAAAACGATGCGTTTTGGTTAGGAGA
71947020 TTTTGCGGCG
Statistics
Matches: 145, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
112 1 0.01
113 86 0.59
114 53 0.37
115 5 0.03
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (112 bp):
AAGCGCCACTAATTCTAGCATACATCAACACAAAAACGATGCGTTTTGGTTAGGAGAAATTACGA
CGCATATCGCAAAACGCCGCTAAGACACTTTTACGGCGTTTTTTGAG
Found at i:71950644 original size:51 final size:51
Alignment explanation
Indices: 71950501--71950683 Score: 158
Period size: 51 Copynumber: 3.6 Consensus size: 51
71950491 AGTTGCTAGG
* * * * *
71950501 TCACGTGTGTAGTACCATGTGCAGGCTACTACA-TGTACCGGAATG-ATA-GG
1 TCACATGTGTAGTACTATGTGCAGGCTACTA-AGCGTACCGG-ATGAAAATGA
* * * ***
71950551 TCGCATGTGTAGTATTATGTGCAGGCTATTAAGCGTACCGGAT-AGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTAAGCGTACCGGATGAAAAT-GA
** * * * *
71950602 TCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTAAGCGTACCGGATGAAAATGA
71950653 TCACATGTGTAGTACTATGTGCAGGCTACTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTA
71950684 TGTGAACCGG
Statistics
Matches: 104, Mismatches: 24, Indels: 9
0.76 0.18 0.07
Matches are distributed among these distances:
49 3 0.03
50 33 0.32
51 66 0.63
52 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTAAGCGTACCGGATGAAAATGA
Found at i:71950687 original size:26 final size:26
Alignment explanation
Indices: 71950607--71950687 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
71950597 TTCGATCATG
71950607 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * ***
71950633 CGTGTA-T-CGGATGAAAATGG-TCAC-A
1 TGTGTAGTAC-TATGTGCA-GGCT-ACTA
71950658 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
71950684 TGTG
1 TGTG
71950688 AACCGGGTAC
Statistics
Matches: 38, Mismatches: 10, Indels: 14
0.61 0.16 0.23
Matches are distributed among these distances:
24 1 0.03
25 16 0.42
26 20 0.53
27 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:71952970 original size:13 final size:12
Alignment explanation
Indices: 71952954--71953007 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 12
71952944 ATCCCTCAAA
71952954 AAATTTCTTTGAG
1 AAATTT-TTTGAG
71952967 AAATTTTTTGAGGGAG
1 AAATTTTTT----GAG
71952983 AAATTTTTTGAAG
1 AAATTTTTTG-AG
71952996 AAATTTTTTGAG
1 AAATTTTTTGAG
71953008 GGAGAAATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
12 6 0.17
13 18 0.50
16 12 0.33
ACGTcount: A:0.33, C:0.02, G:0.20, T:0.44
Consensus pattern (12 bp):
AAATTTTTTGAG
Found at i:71952987 original size:29 final size:28
Alignment explanation
Indices: 71952954--71953023 Score: 122
Period size: 29 Copynumber: 2.4 Consensus size: 28
71952944 ATCCCTCAAA
71952954 AAATTTCTTTGAGAAATTTTTTGAGGGAG
1 AAATTT-TTTGAGAAATTTTTTGAGGGAG
71952983 AAATTTTTTGAAGAAATTTTTTGAGGGAG
1 AAATTTTTTG-AGAAATTTTTTGAGGGAG
71953012 AAATTTTTTGAG
1 AAATTTTTTGAG
71953024 GGATATATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.33, C:0.01, G:0.23, T:0.43
Consensus pattern (28 bp):
AAATTTTTTGAGAAATTTTTTGAGGGAG
Found at i:71953033 original size:16 final size:16
Alignment explanation
Indices: 71952964--71953026 Score: 105
Period size: 16 Copynumber: 4.1 Consensus size: 16
71952954 AAATTTCTTT
71952964 GAGAAATTTTTTGAGG
1 GAGAAATTTTTTGAGG
71952980 GAGAAATTTTTTGA--
1 GAGAAATTTTTTGAGG
71952994 -AGAAATTTTTTGAGG
1 GAGAAATTTTTTGAGG
71953009 GAGAAATTTTTTGAGG
1 GAGAAATTTTTTGAGG
71953025 GA
1 GA
71953027 TATATTTGGG
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
13 13 0.30
16 31 0.70
ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38
Consensus pattern (16 bp):
GAGAAATTTTTTGAGG
Found at i:71955561 original size:31 final size:31
Alignment explanation
Indices: 71955526--71955588 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
71955516 TACAATTTGA
* * * *
71955526 TCATTGAATTATTCGAAAGTTTTTATTTAAG
1 TCATTAAACTATTCAAAAGTTTTAATTTAAG
*
71955557 TCATTAAACTATTTAAAAGTTTTAATTTAAG
1 TCATTAAACTATTCAAAAGTTTTAATTTAAG
71955588 T
1 T
71955589 TACCGGGCTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (31 bp):
TCATTAAACTATTCAAAAGTTTTAATTTAAG
Found at i:71975234 original size:16 final size:16
Alignment explanation
Indices: 71975213--71975243 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
71975203 ACATGCACTG
*
71975213 ATTAAGTACTATGTCC
1 ATTAAGTACAATGTCC
71975229 ATTAAGTACAATGTC
1 ATTAAGTACAATGTC
71975244 AATCCGGTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (16 bp):
ATTAAGTACAATGTCC
Found at i:71982013 original size:116 final size:116
Alignment explanation
Indices: 71981809--71982040 Score: 464
Period size: 116 Copynumber: 2.0 Consensus size: 116
71981799 CCTGTGCTCT
71981809 ACCTTTGTTTTTTGATTGAATATTTTGTAGTTATCCTTACGCCCAGGATCAGATATTCTTAGTCT
1 ACCTTTGTTTTTTGATTGAATATTTTGTAGTTATCCTTACGCCCAGGATCAGATATTCTTAGTCT
71981874 GCCAGCCACATGCACCACCTGACATCTCGTGGTTTTTTTGGGGACCTATAA
66 GCCAGCCACATGCACCACCTGACATCTCGTGGTTTTTTTGGGGACCTATAA
71981925 ACCTTTGTTTTTTGATTGAATATTTTGTAGTTATCCTTACGCCCAGGATCAGATATTCTTAGTCT
1 ACCTTTGTTTTTTGATTGAATATTTTGTAGTTATCCTTACGCCCAGGATCAGATATTCTTAGTCT
71981990 GCCAGCCACATGCACCACCTGACATCTCGTGGTTTTTTTGGGGACCTATAA
66 GCCAGCCACATGCACCACCTGACATCTCGTGGTTTTTTTGGGGACCTATAA
71982041 TCCTACATCG
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (116 bp):
ACCTTTGTTTTTTGATTGAATATTTTGTAGTTATCCTTACGCCCAGGATCAGATATTCTTAGTCT
GCCAGCCACATGCACCACCTGACATCTCGTGGTTTTTTTGGGGACCTATAA
Found at i:71999156 original size:69 final size:69
Alignment explanation
Indices: 71999042--71999484 Score: 530
Period size: 69 Copynumber: 6.4 Consensus size: 69
71999032 ATAATGATAA
* * *
71999042 GCAGGGGTGCTTGGAACAGAATCTGCAAAAATAGATGAGCTCTTCCCCTTGAACATGTTATCTGC
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAATAGATGAACCCTTCCCCTTGAACATGTTATCTGC
71999107 ATAG
66 ATAG
* * * * *
71999111 GCAGGAGTGCTTGGAATAGAATCTGCAAATATGGACGAACCCTTCCCCTTGAACAAGTTATCTGC
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAATAGATGAACCCTTCCCCTTGAACATGTTATCTGC
71999176 ATAG
66 ATAG
* * * ** * *
71999180 GCAGGAGTGCTTGGAACAGAATCTCCAAATATGGATGAACCCTGACCCTTAAACAAGTTATCTGC
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAATAGATGAACCCTTCCCCTTGAACATGTTATCTGC
71999245 ATAG
66 ATAG
* * * * *
71999249 GCAGGAGTGCTTGGAACAGAATCTGCAAACAA-GGACGAACTCTTCCCCTTAAACATGCTATCTG
1 GCAGGAGTGCTTGGAACAGAATCTGCAAA-AATAGATGAACCCTTCCCCTTGAACATGTTATCTG
71999313 CATAG
65 CATAG
* * * *
71999318 GCCGGAGTGCTTGGAACAGAATCTGCAAAAACAGATGAGCCCTTCCCCTGGAACATGTTATCTGC
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAATAGATGAACCCTTCCCCTTGAACATGTTATCTGC
*
71999383 ATAA
66 ATAG
* * ** * * * * *
71999387 GCAGGGGTGCTTGGAACAGATTCCCCAAAAACAGATGAGCTCTT-CCCTTGGAACATGTCACCTG
1 GCAGGAGTGCTTGGAACAGAATCTGCAAAAATAGATGAACCCTTCCCCTT-GAACATGTTATCTG
*
71999451 CGTAG
65 CATAG
*
71999456 GCAGGGGTGCTTGGAACAGAATCTGCAAA
1 GCAGGAGTGCTTGGAACAGAATCTGCAAA
71999485 CAATGGACCT
Statistics
Matches: 326, Mismatches: 45, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
68 6 0.02
69 319 0.98
70 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (69 bp):
GCAGGAGTGCTTGGAACAGAATCTGCAAAAATAGATGAACCCTTCCCCTTGAACATGTTATCTGC
ATAG
Found at i:71999403 original size:207 final size:208
Alignment explanation
Indices: 71999042--71999492 Score: 602
Period size: 207 Copynumber: 2.2 Consensus size: 208
71999032 ATAATGATAA
* * * * *
71999042 GCAGGGGTGCTTGGAACAGAATCTGCAAA-AATAGATGAGCTCTTCCCCTTGAACATGTTATCTG
1 GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGACGAACTCTTCCCCTTAAACATGCTATCTG
* * ** *
71999106 CATAGGCAGGAGTGCTTGGAATAGAATCTGCAAATATGGACGAACCCTTCCCCTTGAACAAGTTA
66 CATAGGCAGGAGTGCTTGGAACAGAATCTGCAAAAACAGACGAACCCTTCCCCTGGAACAAGTTA
* * * **
71999171 TCTGCATAGGCAGGAGTGCTTGGAACAGAATCTCCAAATATGGATGAACCCTGACCCTT-AAACA
131 TCTGCATAAGCAGGAGTGCTTGGAACAGAATCCCCAAAAACAGATGAACCCT-ACCCTTGAAACA
* *
71999235 AGTTATCTGCATAG
195 AGTCACCTGCATAG
*
71999249 GCAGGAGTGCTTGGAACAGAATCTGCAAACAA-GGACGAACTCTTCCCCTTAAACATGCTATCTG
1 GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGACGAACTCTTCCCCTTAAACATGCTATCTG
* * * *
71999313 CATAGGCCGGAGTGCTTGGAACAGAATCTGCAAAAACAGATGAGCCCTTCCCCTGGAACATGTTA
66 CATAGGCAGGAGTGCTTGGAACAGAATCTGCAAAAACAGACGAACCCTTCCCCTGGAACAAGTTA
* * * * * * *
71999378 TCTGCATAAGCAGGGGTGCTTGGAACAGATTCCCCAAAAACAGATGAGCTCTTCCCTTGGAACAT
131 TCTGCATAAGCAGGAGTGCTTGGAACAGAATCCCCAAAAACAGATGAACCCTACCCTTGAAACAA
*
71999443 GTCACCTGCGTAG
196 GTCACCTGCATAG
71999456 GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGAC
1 GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGAC
71999493 CTTTCCCTGG
Statistics
Matches: 210, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
206 5 0.02
207 199 0.95
208 6 0.03
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (208 bp):
GCAGGGGTGCTTGGAACAGAATCTGCAAACAATGGACGAACTCTTCCCCTTAAACATGCTATCTG
CATAGGCAGGAGTGCTTGGAACAGAATCTGCAAAAACAGACGAACCCTTCCCCTGGAACAAGTTA
TCTGCATAAGCAGGAGTGCTTGGAACAGAATCCCCAAAAACAGATGAACCCTACCCTTGAAACAA
GTCACCTGCATAG
Found at i:72009088 original size:14 final size:14
Alignment explanation
Indices: 72009069--72009098 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
72009059 TCAAATCACC
72009069 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
72009083 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
72009097 GG
1 GG
72009099 CCTAAATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.47, T:0.33
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:72020796 original size:21 final size:21
Alignment explanation
Indices: 72020770--72020810 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
72020760 TGGAAACATG
*
72020770 AATGATCTT-AATGATAATCCA
1 AATGAT-TTCAATGAAAATCCA
72020791 AATGATTTCAATGAAAATCC
1 AATGATTTCAATGAAAATCC
72020811 TTCCGTTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.32
Consensus pattern (21 bp):
AATGATTTCAATGAAAATCCA
Found at i:72023507 original size:19 final size:19
Alignment explanation
Indices: 72023483--72023519 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
72023473 TAATGACAAC
72023483 AATGATCTATTATTAAACG
1 AATGATCTATTATTAAACG
72023502 AATGATCTATTATTAAAC
1 AATGATCTATTATTAAAC
72023520 AGTGACAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (19 bp):
AATGATCTATTATTAAACG
Found at i:72027821 original size:12 final size:12
Alignment explanation
Indices: 72027804--72027829 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
72027794 TGAATCCGAG
72027804 TTAAAAAATATT
1 TTAAAAAATATT
72027816 TTAAAAAATATT
1 TTAAAAAATATT
72027828 TT
1 TT
72027830 TTGTGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TTAAAAAATATT
Found at i:72030287 original size:15 final size:16
Alignment explanation
Indices: 72030252--72030291 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
72030242 GGCTAATAGG
*
72030252 ATTATTATATATATGT
1 ATTATGATATATATGT
72030268 ATTATGATATA-ATGT
1 ATTATGATATATATGT
*
72030283 TTTATGATA
1 ATTATGATA
72030292 ATAGTAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.53
Consensus pattern (16 bp):
ATTATGATATATATGT
Found at i:72031058 original size:23 final size:23
Alignment explanation
Indices: 72031032--72031076 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
72031022 GTGCATCTAG
*
72031032 GTTGCATTTTGTATGATCATTTT
1 GTTGCATTTTGCATGATCATTTT
*
72031055 GTTGCATTTTGCATGTTCATTT
1 GTTGCATTTTGCATGATCATTT
72031077 GGTATAGTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.16, C:0.11, G:0.18, T:0.56
Consensus pattern (23 bp):
GTTGCATTTTGCATGATCATTTT
Found at i:72037663 original size:21 final size:22
Alignment explanation
Indices: 72037634--72037674 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
72037624 TGAAAATAAA
*
72037634 ACTTGAAATTCT-TAAATTAAC
1 ACTTAAAATTCTGTAAATTAAC
*
72037655 ACTTAAAATTTTGTAAATTA
1 ACTTAAAATTCTGTAAATTA
72037675 TTATATATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (22 bp):
ACTTAAAATTCTGTAAATTAAC
Found at i:72038583 original size:27 final size:27
Alignment explanation
Indices: 72038553--72038610 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
72038543 GTCACTCCCA
*
72038553 AAGAAATAGTTGTTATTCCACTTGTAC
1 AAGAAATAGCTGTTATTCCACTTGTAC
72038580 AAGAAATAGCTGTTATTCCACTTGTAC
1 AAGAAATAGCTGTTATTCCACTTGTAC
72038607 AAGA
1 AAGA
72038611 TAAGGAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (27 bp):
AAGAAATAGCTGTTATTCCACTTGTAC
Found at i:72045717 original size:27 final size:27
Alignment explanation
Indices: 72045660--72045719 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
72045650 TTGTCCCGAT
* *
72045660 GGACTATCCCCTGATTACCATCCTAGT
1 GGACTATCCCATGATTACCATCCTAGC
* * *
72045687 GGACTATCCCATGATTACCGTCTTGGC
1 GGACTATCCCATGATTACCATCCTAGC
72045714 GGACTA
1 GGACTA
72045720 CCTTACCATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (27 bp):
GGACTATCCCATGATTACCATCCTAGC
Found at i:72045921 original size:56 final size:56
Alignment explanation
Indices: 72045832--72045939 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
72045822 ATCCCCATGT
* * *
72045832 TTAATGTCCTAGCAGACTTTAACGAATGCCATAGTCGAGCTATGGTCTTACAATGG
1 TTAATGTCATAGCAGACTTTAACGAATGCCATAGCCAAGCTATGGTCTTACAATGG
* * * *
72045888 TTAATGTCATGGCAGACTTTAACGGATGTCATAGCCAAGGTATGGTCTTACA
1 TTAATGTCATAGCAGACTTTAACGAATGCCATAGCCAAGCTATGGTCTTACA
72045940 CCTGTAATCC
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (56 bp):
TTAATGTCATAGCAGACTTTAACGAATGCCATAGCCAAGCTATGGTCTTACAATGG
Found at i:72048606 original size:89 final size:90
Alignment explanation
Indices: 72048466--72048666 Score: 241
Period size: 89 Copynumber: 2.2 Consensus size: 90
72048456 CTTTAAAAAA
*
72048466 TAAAAAAAGCAATTAAGCCCCTCATCATTTTTTGCACTCAACTGAGCACTTAAAC-TTCAAAATG
1 TAAAAAAAGCAATTAAGCCCCTCATCATTTTTTCCACTCAACTGAGCACTTAAACTTTCAAAATG
*
72048530 CATCAAAAAAGGCC-CTC-AAATTTCTT
66 CATC-AAAAAGACCTC-CAAAATTT-TT
* * * * * * *
72048556 TAAAAAAAGCGATTAAGCCCTTGC-T-TTTTTTTCCACTCAATTGGGTACTTAAACTTTCGAAAT
1 TAAAAAAAGCAATTAAGCCCCT-CATCATTTTTTCCACTCAACTGAGCACTTAAACTTTCAAAAT
72048619 GCATCAAAAAGACCTCCAAAATTTTT
65 GCATCAAAAAGACCTCCAAAATTTTT
*
72048645 CAAAAAAAGCAATTAAGCCCCT
1 TAAAAAAAGCAATTAAGCCCCT
72048667 ACTCTTATTA
Statistics
Matches: 95, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
89 54 0.57
90 40 0.42
91 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (90 bp):
TAAAAAAAGCAATTAAGCCCCTCATCATTTTTTCCACTCAACTGAGCACTTAAACTTTCAAAATG
CATCAAAAAGACCTCCAAAATTTTT
Found at i:72048714 original size:20 final size:21
Alignment explanation
Indices: 72048689--72048735 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
72048679 AATTAGAAAA
72048689 AAAAATAAATTAAATTTT-AT
1 AAAAATAAATTAAATTTTAAT
72048709 AAAAAT-AATTAAATTTTAAT
1 AAAAATAAATTAAATTTTAAT
72048729 AAAAATA
1 AAAAATA
72048736 TAAAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAAATAAATTAAATTTTAAT
Found at i:72048911 original size:17 final size:16
Alignment explanation
Indices: 72048889--72048922 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72048879 GACATTGGCG
72048889 AAAAATGACAAAAAAAT
1 AAAAATGA-AAAAAAAT
*
72048906 AAAAATGAATAAAAAT
1 AAAAATGAAAAAAAAT
72048922 A
1 A
72048923 TAGAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (16 bp):
AAAAATGAAAAAAAAT
Found at i:72048985 original size:20 final size:21
Alignment explanation
Indices: 72048950--72049016 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 21
72048940 ATTTTTTTGG
72048950 TACGATAATTTTTATAATTTTTT
1 TACGATAA--TTTATAATTTTTT
*
72048973 TACGA-AATTTAT-ATTTCTT
1 TACGATAATTTATAATTTTTT
* * *
72048992 TAC-ATTATGTATAATTTTCT
1 TACGATAATTTATAATTTTTT
72049012 TACGA
1 TACGA
72049017 CTTTTTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 14 0.39
20 13 0.36
21 1 0.03
22 2 0.06
23 5 0.14
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.54
Consensus pattern (21 bp):
TACGATAATTTATAATTTTTT
Found at i:72049088 original size:20 final size:20
Alignment explanation
Indices: 72049046--72049112 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
72049036 TTTTCTTATA
72049046 TTTCTATATATTTTATA-ATTT
1 TTTCTA-AT-TTTTATATATTT
* *
72049067 TTTAC-GATTTTTATTTATTT
1 TTT-CTAATTTTTATATATTT
72049087 TTTCTAATTTTTATATA-TT
1 TTTCTAATTTTTATATATTT
72049106 TTTCTAA
1 TTTCTAA
72049113 AATTTAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 16 0.41
20 19 0.49
21 3 0.08
22 1 0.03
ACGTcount: A:0.25, C:0.06, G:0.01, T:0.67
Consensus pattern (20 bp):
TTTCTAATTTTTATATATTT
Found at i:72049109 original size:19 final size:19
Alignment explanation
Indices: 72049033--72049112 Score: 67
Period size: 20 Copynumber: 4.1 Consensus size: 19
72049023 AAAATTTTAA
* *
72049033 AATTTTTCT-TATATTTCT
1 AATTTTTATATATTTTTCT
72049051 ATATATTTTATA-ATTTTT-T
1 A-AT-TTTTATATATTTTTCT
*
72049070 ACGATTTTTATTTATTTTTTCT
1 A--ATTTTTATATA-TTTTTCT
72049092 AATTTTTATATATTTTTCT
1 AATTTTTATATATTTTTCT
72049111 AA
1 AA
72049113 AATTTAATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
18 1 0.02
19 19 0.38
20 23 0.46
21 5 0.10
22 2 0.04
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.66
Consensus pattern (19 bp):
AATTTTTATATATTTTTCT
Found at i:72049118 original size:19 final size:20
Alignment explanation
Indices: 72049085--72049128 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
72049075 TTTTATTTAT
* * *
72049085 TTTTTCT-AATTTTTATATA
1 TTTTTCTAAAATTTAATAAA
72049104 TTTTTCTAAAATTTAATAAA
1 TTTTTCTAAAATTTAATAAA
72049124 TTTTT
1 TTTTT
72049129 AATATTTGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTTCTAAAATTTAATAAA
Found at i:72051580 original size:58 final size:58
Alignment explanation
Indices: 72051464--72051577 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 58
72051454 AATGAGAAAC
* * * * * **
72051464 ATTTGGAAATGAATGTGGTTTTCTCTAAAAAGGAAAATGAAAATGGAGAAATGGAAAT
1 ATTTGAAAATGAATGTGGTTTTCTCTAAAAAGGAAAAAGAAAAAGAAAAAATAAAAAT
* *
72051522 ATTTGAAAATGAATGTGGTTTTCTC-CAAAATGAAAAAGAAAAAGAAAAAATAAAAA
1 ATTTGAAAATGAATGTGGTTTTCTCTAAAAAGGAAAAAGAAAAAGAAAAAATAAAAA
72051578 ATAAAATGAC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.51, C:0.04, G:0.19, T:0.25
Consensus pattern (58 bp):
ATTTGAAAATGAATGTGGTTTTCTCTAAAAAGGAAAAAGAAAAAGAAAAAATAAAAAT
Found at i:72054274 original size:20 final size:20
Alignment explanation
Indices: 72054249--72054289 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
72054239 AAGTGGTATC
*
72054249 AATACACCTGAAAAAATGAT
1 AATACACCTGAAAAAACGAT
* *
72054269 AATACACTTGAGAAAACGAT
1 AATACACCTGAAAAAACGAT
72054289 A
1 A
72054290 CCAAACTTGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.15, G:0.12, T:0.20
Consensus pattern (20 bp):
AATACACCTGAAAAAACGAT
Found at i:72064186 original size:51 final size:50
Alignment explanation
Indices: 72064124--72064308 Score: 196
Period size: 51 Copynumber: 3.7 Consensus size: 50
72064114 CCGGTTCACA
* * *
72064124 TAGTAGCCTGCACATGGTACTACACATGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCGATACACG
* * * * * *
72064175 TAGTAGGCTGCACATAGTACTACACACGTGATCGA-AGCTAT-CTAGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCCGA-TACACG
* * *
72064226 TAGTAGCTTGCACATAGTACTACACATGCGACC-TATCATTCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCCGATACACG
72064276 TAGTAGCCTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
72064309 TAGCAACTTC
Statistics
Matches: 107, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
49 1 0.01
50 41 0.38
51 63 0.59
52 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCCGATACACG
Found at i:72064298 original size:101 final size:101
Alignment explanation
Indices: 72064122--72064306 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
72064112 ACCCGGTTCA
* * * *
72064122 CATAGTAGCCTGCACATGGTACTACACATGTGACCATTTTCATCCGATACACGTAGTAGGCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TATCATCCGATACACGTAGTAGCCTGCA
72064187 CATAGTACTACACACGTGATCGAAGCTATCTAGTACG
65 CATAGTACTACACACGTGATCGAAGCTATCTAGTACG
*
72064224 CATAGTAGCTTGCACATAGTACTACACATGCGACC-TATCATTCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATATCA-TCCGATACACGTAGTAGCCTGCA
72064288 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
72064307 CCTAGCAACT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 41 0.53
102 32 0.42
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATATCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATCTAGTACG
Found at i:72064567 original size:14 final size:15
Alignment explanation
Indices: 72064548--72064576 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72064538 GGAAATTAAA
72064548 CTTTATTCTT-TATT
1 CTTTATTCTTATATT
72064562 CTTTATTCTTATATT
1 CTTTATTCTTATATT
72064577 TTATAACATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (15 bp):
CTTTATTCTTATATT
Found at i:72074034 original size:37 final size:37
Alignment explanation
Indices: 72073979--72074070 Score: 166
Period size: 37 Copynumber: 2.5 Consensus size: 37
72073969 AGCAAGGGTG
*
72073979 TTCAGACACTTAACCACTTGGAACCACTTCGAATACA
1 TTCACACACTTAACCACTTGGAACCACTTCGAATACA
*
72074016 TTCACACACTTAACCACTTGGAACCACTTGGAATACA
1 TTCACACACTTAACCACTTGGAACCACTTCGAATACA
72074053 TTCACACACTTAACCACT
1 TTCACACACTTAACCACT
72074071 AGGCTATTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.25
Consensus pattern (37 bp):
TTCACACACTTAACCACTTGGAACCACTTCGAATACA
Found at i:72077630 original size:17 final size:19
Alignment explanation
Indices: 72077608--72077642 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
72077598 AAGAGAAAAT
72077608 ATGAG-AGAAAAA-GAAAG
1 ATGAGAAGAAAAATGAAAG
72077625 ATGAGAAGAAAAATGAAA
1 ATGAGAAGAAAAATGAAA
72077643 AAATAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 7 0.44
19 4 0.25
ACGTcount: A:0.66, C:0.00, G:0.26, T:0.09
Consensus pattern (19 bp):
ATGAGAAGAAAAATGAAAG
Found at i:72082385 original size:182 final size:182
Alignment explanation
Indices: 72082078--72082442 Score: 730
Period size: 182 Copynumber: 2.0 Consensus size: 182
72082068 CTAGAGACCT
72082078 CCTACTTATACTAATTAAATAATATTCACAAAGTATTTCATTGGAATTATGGTCTCGAAAGCACT
1 CCTACTTATACTAATTAAATAATATTCACAAAGTATTTCATTGGAATTATGGTCTCGAAAGCACT
72082143 GTTTTCGACACCAATAAAAATCAAGCTGTTACAATTCATATGGTTTAAGTTGCCTCAATGTATAT
66 GTTTTCGACACCAATAAAAATCAAGCTGTTACAATTCATATGGTTTAAGTTGCCTCAATGTATAT
72082208 GCCAGTACCTTAACATCTTGCATCATCACACAACCAAGACCAGTATGGGACG
131 GCCAGTACCTTAACATCTTGCATCATCACACAACCAAGACCAGTATGGGACG
72082260 CCTACTTATACTAATTAAATAATATTCACAAAGTATTTCATTGGAATTATGGTCTCGAAAGCACT
1 CCTACTTATACTAATTAAATAATATTCACAAAGTATTTCATTGGAATTATGGTCTCGAAAGCACT
72082325 GTTTTCGACACCAATAAAAATCAAGCTGTTACAATTCATATGGTTTAAGTTGCCTCAATGTATAT
66 GTTTTCGACACCAATAAAAATCAAGCTGTTACAATTCATATGGTTTAAGTTGCCTCAATGTATAT
72082390 GCCAGTACCTTAACATCTTGCATCATCACACAACCAAGACCAGTATGGGACG
131 GCCAGTACCTTAACATCTTGCATCATCACACAACCAAGACCAGTATGGGACG
72082442 C
1 C
72082443 ATCACTATAA
Statistics
Matches: 183, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
182 183 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.31
Consensus pattern (182 bp):
CCTACTTATACTAATTAAATAATATTCACAAAGTATTTCATTGGAATTATGGTCTCGAAAGCACT
GTTTTCGACACCAATAAAAATCAAGCTGTTACAATTCATATGGTTTAAGTTGCCTCAATGTATAT
GCCAGTACCTTAACATCTTGCATCATCACACAACCAAGACCAGTATGGGACG
Found at i:72085866 original size:50 final size:50
Alignment explanation
Indices: 72085791--72085900 Score: 211
Period size: 50 Copynumber: 2.2 Consensus size: 50
72085781 TTCAACGGGC
72085791 ATGAAAAGGAAAGAAACGGTAAGTGTTCAAATGAAATATATCATGTATTA
1 ATGAAAAGGAAAGAAACGGTAAGTGTTCAAATGAAATATATCATGTATTA
*
72085841 ATGAAAAGGAAAGGAACGGTAAGTGTTCAAATGAAATATATCATGTATTA
1 ATGAAAAGGAAAGAAACGGTAAGTGTTCAAATGAAATATATCATGTATTA
72085891 ATGAAAAGGA
1 ATGAAAAGGA
72085901 TTGAAATCGT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.48, C:0.05, G:0.22, T:0.25
Consensus pattern (50 bp):
ATGAAAAGGAAAGAAACGGTAAGTGTTCAAATGAAATATATCATGTATTA
Found at i:72090062 original size:79 final size:82
Alignment explanation
Indices: 72089951--72090135 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
72089941 GCTACTCGTT
* *
72089951 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
72090014 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
72090031 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
72090094 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
72090111 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72090136 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:72090135 original size:40 final size:40
Alignment explanation
Indices: 72089932--72090135 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
72089922 CGGAATTTAA
** *
72089932 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72089972 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72090012 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72090051 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72090091 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72090131 CCGGA
1 CCGGA
72090136 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72091063 original size:56 final size:56
Alignment explanation
Indices: 72090996--72091115 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
72090986 TATTAGTTTA
72090996 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
72091052 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
72091108 TTGCCCAT
1 TTGCCCAT
72091116 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:72112498 original size:79 final size:78
Alignment explanation
Indices: 72112396--72112618 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
72112386 GCTCCTCGTT
* *
72112396 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
72112461 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
72112476 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
72112540 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
72112554 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
72112617 GA
63 GA
72112619 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:72112513 original size:39 final size:40
Alignment explanation
Indices: 72112396--72112618 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
72112386 GCTCCTCGTT
* *
72112396 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
72112436 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
72112476 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
72112515 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
72112554 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
72112595 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72112619 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:72117463 original size:21 final size:21
Alignment explanation
Indices: 72117424--72117463 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
72117414 CTTCCATCAT
*
72117424 TCAACCATATTAAGTTACTCA
1 TCAACCATATTAAGCTACTCA
* *
72117445 TCAACCATTTTAGGCTACT
1 TCAACCATATTAAGCTACT
72117464 TATATACATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (21 bp):
TCAACCATATTAAGCTACTCA
Found at i:72118034 original size:25 final size:25
Alignment explanation
Indices: 72118006--72118091 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 25
72117996 TATGCTCATA
72118006 CGAGCTATGAATCGGTATGTTCACT
1 CGAGCTATGAATCGGTATGTTCACT
* * *
72118031 CGAGCTGT-AGATCAGCATGCTCTCA-T
1 CGAGCTATGA-ATCGGTATG-T-TCACT
* * *
72118057 -GAGCTATAAATCGGTATGGTCTCT
1 CGAGCTATGAATCGGTATGTTCACT
72118081 CGAGCTATGAA
1 CGAGCTATGAA
72118092 GTATCCGCAA
Statistics
Matches: 46, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
23 2 0.04
24 2 0.04
25 36 0.78
26 3 0.07
27 3 0.07
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
CGAGCTATGAATCGGTATGTTCACT
Found at i:72118247 original size:17 final size:18
Alignment explanation
Indices: 72118222--72118255 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72118212 CAACCATGTA
*
72118222 AATTTATAAA-AATTCAC
1 AATTCATAAATAATTCAC
72118239 AATTCATAAATAATTCA
1 AATTCATAAATAATTCA
72118256 ATATAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (18 bp):
AATTCATAAATAATTCAC
Found at i:72119954 original size:21 final size:21
Alignment explanation
Indices: 72119928--72119968 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
72119918 AGCATATAAA
72119928 TTATAACTCTTAATTATTTTT
1 TTATAACTCTTAATTATTTTT
* *
72119949 TTATAATTTTTAATTATTTT
1 TTATAACTCTTAATTATTTT
72119969 CCAAAGTCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATAACTCTTAATTATTTTT
Found at i:72120593 original size:51 final size:50
Alignment explanation
Indices: 72120483--72120670 Score: 193
Period size: 51 Copynumber: 3.7 Consensus size: 50
72120473 ATACCCGGTT
* * *
72120483 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCC-GATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCT-ATCCAG-TA
* * * *
72120534 AACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATCCAGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCAATCTATCCAGTA
* * * * *
72120585 CGCATAGTAGCCTG-ACATAGTACAACACATGCGACCTATC-ATTCCAGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCTA-TCCAGTA
* *
72120634 CACATAGTAGCCTGCACATAGTACTGCACACATGACC
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC
72120671 TAGTAACTTC
Statistics
Matches: 111, Mismatches: 22, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 23 0.21
50 34 0.31
51 49 0.44
52 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCTATCCAGTA
Found at i:72122611 original size:51 final size:50
Alignment explanation
Indices: 72122501--72122688 Score: 193
Period size: 51 Copynumber: 3.7 Consensus size: 50
72122491 ATACCCGGTT
* * *
72122501 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCC-GATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCT-ATCCAG-TA
* * * *
72122552 AACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATCCAGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCAATCTATCCAGTA
* * * * *
72122603 CGCATAGTAGCCTG-ACATAGTACAACACATGCGACCTATC-ATTCCAGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCTA-TCCAGTA
* *
72122652 CACATAGTAGCCTGCACATAGTACTGCACACATGACC
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC
72122689 TAGTAACTTC
Statistics
Matches: 111, Mismatches: 22, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 23 0.21
50 34 0.31
51 49 0.44
52 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCAATCTATCCAGTA
Found at i:72131617 original size:51 final size:50
Alignment explanation
Indices: 72131495--72131679 Score: 230
Period size: 51 Copynumber: 3.7 Consensus size: 50
72131485 CATTCGATAT
* * * *
72131495 ACGTAGTAGCCTTCATATAGTACTACACATGTGATC-AAGTTTTACGGTCC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTTTT-CGGTAC
*
72131545 ACGTAGTAGCCTCCACATAGTACTACACACGTGACCAAAGCTTTTCGGTAC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAG-TTTTCGGTAC
* * * * *
72131596 ACATAGTAGCCTTCACCTAGTACTACACATGTGACCATTA-TTTATCGATAC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGTTT-TCGGTAC
72131647 ACGTAGTAGCCTTCACATAGTACTACACACGTG
1 ACGTAGTAGCCTTCACATAGTACTACACACGTG
72131680 TTCATCAATA
Statistics
Matches: 117, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
50 35 0.30
51 77 0.66
52 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (50 bp):
ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTTTTCGGTAC
Found at i:72140750 original size:37 final size:37
Alignment explanation
Indices: 72140700--72140773 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
72140690 CACTAACTCG
* *
72140700 TAAATGGTCTAATTACCATGTAAGGATCTCCAATTTA
1 TAAATGGTCTAATTACCATATAAGGACCTCCAATTTA
72140737 TAAATGGTCTAATTACCATATAAGGACCTCCAATTTA
1 TAAATGGTCTAATTACCATATAAGGACCTCCAATTTA
72140774 AAGTTCTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (37 bp):
TAAATGGTCTAATTACCATATAAGGACCTCCAATTTA
Found at i:72143497 original size:14 final size:14
Alignment explanation
Indices: 72143461--72143497 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
72143451 TGGAATTGGG
72143461 AATTTAGAATAAAA
1 AATTTAGAATAAAA
**
72143475 AATCGAGAATAAAA
1 AATTTAGAATAAAA
72143489 AATTTAGAA
1 AATTTAGAA
72143498 CAATAAGTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.62, C:0.03, G:0.11, T:0.24
Consensus pattern (14 bp):
AATTTAGAATAAAA
Found at i:72145465 original size:27 final size:26
Alignment explanation
Indices: 72145435--72145502 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 26
72145425 AAAAAAGTTT
72145435 AAAAGTTTTGGGGGAAAGCAAAAGGAA
1 AAAAGTTTTGGGGGAAAGCAAAA-GAA
** *
72145462 AAAAGTTTTTGGGAAAAAGTAAAAGAA
1 AAAAG-TTTTGGGGGAAAGCAAAAGAA
* *
72145489 AAAAATTTGGGGGG
1 AAAAGTTTTGGGGG
72145503 GTTTGGGGGA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.18
27 12 0.36
28 15 0.45
ACGTcount: A:0.49, C:0.01, G:0.31, T:0.19
Consensus pattern (26 bp):
AAAAGTTTTGGGGGAAAGCAAAAGAA
Found at i:72145539 original size:20 final size:20
Alignment explanation
Indices: 72145504--72145558 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
72145494 TTTGGGGGGG
72145504 TTTG-GGGGAAGT-AAAATT
1 TTTGAGGGGAAGTAAAAATT
72145522 TTTGAGGGGAAGTAAAAATT
1 TTTGAGGGGAAGTAAAAATT
* *
72145542 TTGGAGTGGAAGTAAAA
1 TTTGAGGGGAAGTAAAA
72145559 GAAAAAAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.12
19 8 0.24
20 21 0.64
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.29
Consensus pattern (20 bp):
TTTGAGGGGAAGTAAAAATT
Found at i:72146200 original size:23 final size:21
Alignment explanation
Indices: 72146174--72146221 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
72146164 AAAAATCGAG
*
72146174 TTGATTTGATTAACTCGATTAAT
1 TTGATTTGAATAACTCGA--AAT
*
72146197 TTGATTTGAATAATTCGAAAT
1 TTGATTTGAATAACTCGAAAT
72146218 TTGA
1 TTGA
72146222 ACTTTTTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 7 0.30
23 16 0.70
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.46
Consensus pattern (21 bp):
TTGATTTGAATAACTCGAAAT
Found at i:72146742 original size:30 final size:26
Alignment explanation
Indices: 72146708--72146765 Score: 71
Period size: 30 Copynumber: 2.1 Consensus size: 26
72146698 GATATATAAA
72146708 TTAATTAAATATAAATATAAACTATTTATT
1 TTAATTAAA-AT-AATATAAA-T-TTTATT
*
72146738 TTAATTAAAGTAATATAAATTTTATT
1 TTAATTAAAATAATATAAATTTTATT
72146764 TT
1 TT
72146766 TTAAACACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 8 0.30
27 1 0.04
28 8 0.30
29 1 0.04
30 9 0.33
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
TTAATTAAAATAATATAAATTTTATT
Found at i:72147973 original size:29 final size:29
Alignment explanation
Indices: 72147930--72147986 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
72147920 TTACGTCAAC
* *
72147930 TATGGTTAAATTTTAATTTTATAAAATTG
1 TATGGTAAAAATTTAATTTTATAAAATTG
72147959 TATGGTAAAAATTTAATTTTATAAAATT
1 TATGGTAAAAATTTAATTTTATAAAATT
72147987 AATCAAGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (29 bp):
TATGGTAAAAATTTAATTTTATAAAATTG
Found at i:72147986 original size:15 final size:15
Alignment explanation
Indices: 72147936--72147986 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
72147926 CAACTATGGT
*
72147936 TAAATTTTAATTTTA
1 TAAAATTTAATTTTA
**
72147951 TAAAATTGT-ATGGTA
1 TAAAATT-TAATTTTA
72147966 -AAAATTTAATTTTA
1 TAAAATTTAATTTTA
72147980 TAAAATT
1 TAAAATT
72147987 AATCAAGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
13 1 0.04
14 10 0.36
15 16 0.57
16 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (15 bp):
TAAAATTTAATTTTA
Found at i:72150756 original size:23 final size:22
Alignment explanation
Indices: 72150704--72150756 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
72150694 TCCACGTCTT
*
72150704 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
72150726 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
72150749 TTTCTTTT
1 TTTCTTTT
72150757 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:72153109 original size:4 final size:4
Alignment explanation
Indices: 72153100--72153127 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
72153090 TTAAACTAAG
72153100 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
72153128 AATAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:72159478 original size:22 final size:22
Alignment explanation
Indices: 72159450--72159498 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
72159440 CTCTAATCCT
72159450 CTCAATTTCCTTCCAAAATTCA
1 CTCAATTTCCTTCCAAAATTCA
*
72159472 CTCAATTTCCTTCCAAAATTCT
1 CTCAATTTCCTTCCAAAATTCA
72159494 CTCAA
1 CTCAA
72159499 ACCCATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.37
Consensus pattern (22 bp):
CTCAATTTCCTTCCAAAATTCA
Found at i:72159528 original size:51 final size:52
Alignment explanation
Indices: 72159472--72159586 Score: 171
Period size: 52 Copynumber: 2.2 Consensus size: 52
72159462 CCAAAATTCA
* *
72159472 CTCAATTTCCTTCCAAAA-TTCTCTCAAACCCATATTTAATTTCAATTTCCT
1 CTCAATTTCATTCCAAAATTTCTCTCAAACCCATACTTAATTTCAATTTCCT
* *
72159523 CTCAATTTCATTCCAAAATTTCTCTCAAATCCATACTTAATTTCAATTTCCC
1 CTCAATTTCATTCCAAAATTTCTCTCAAACCCATACTTAATTTCAATTTCCT
72159575 CT-AAGTTTCATT
1 CTCAA-TTTCATT
72159587 TTTAAAATAA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
51 19 0.33
52 39 0.67
ACGTcount: A:0.30, C:0.28, G:0.01, T:0.42
Consensus pattern (52 bp):
CTCAATTTCATTCCAAAATTTCTCTCAAACCCATACTTAATTTCAATTTCCT
Found at i:72159612 original size:10 final size:10
Alignment explanation
Indices: 72159597--72159648 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
72159587 TTTAAAATAA
72159597 TTTTATATTT
1 TTTTATATTT
72159607 TTTTATATTT
1 TTTTATATTT
* **
72159617 TTTTAAAATAA
1 TTTT-ATATTT
*
72159628 TTTTAAATTT
1 TTTTATATTT
72159638 TTTTATATTT
1 TTTTATATTT
72159648 T
1 T
72159649 CATCAATGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 28 0.80
11 7 0.20
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTATATTT
Found at i:72159623 original size:31 final size:31
Alignment explanation
Indices: 72159585--72159648 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
72159575 CTAAGTTTCA
*
72159585 TTTTTAAAATAATTTTATATTTTTTTATATT
1 TTTTTAAAATAATTTTAAATTTTTTTATATT
72159616 TTTTTAAAATAATTTTAAATTTTTTTATATT
1 TTTTTAAAATAATTTTAAATTTTTTTATATT
72159647 TT
1 TT
72159649 CATCAATGGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (31 bp):
TTTTTAAAATAATTTTAAATTTTTTTATATT
Found at i:72160901 original size:55 final size:55
Alignment explanation
Indices: 72160810--72161314 Score: 696
Period size: 55 Copynumber: 9.0 Consensus size: 55
72160800 NNNNNNNNNN
* *
72160810 TAATTTTACTAACCATTAACACAATTGTTGGACTTAATAATTTAACATAATTTGA
1 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
* * *
72160865 TAATTTTACTAACCATTAACAAAATTTTGGGGCTTAATAATTTTACATAATTTGA
1 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
** *
72160920 TAATTTTACCTAATTTAATTAA-A-ATTTTTTGGACTTAATAATTTTACATAATTTGA
1 TAATTTTA-CTAA--CCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
72160976 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
1 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
72161031 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
1 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
72161086 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
1 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
72161141 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
1 TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
** * *
72161196 TAATTTTACCTAATTTAATTAA-A-ATTTTTTTGGCTTAATAATTTTACATAATTTTACATAATT
1 TAATTTTA-CTAA--CCATTAACACA-ATTTTTGG-------A-CTTA-ATAATTTTACATAATT
72161259 TGA
53 TGA
* *
72161262 TAATTTTGCTAACCATTAACA-AAATTTTGAGACTTAATAATTTTACATAATTT
1 TAATTTTACTAACCATTAACACAATTTTTG-GACTTAATAATTTTACATAATTT
72161315 TACATAATGT
Statistics
Matches: 407, Mismatches: 23, Indels: 40
0.87 0.05 0.09
Matches are distributed among these distances:
53 5 0.01
54 1 0.00
55 284 0.70
56 50 0.12
57 10 0.02
58 10 0.02
63 10 0.02
64 4 0.01
65 7 0.02
66 26 0.06
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (55 bp):
TAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTACATAATTTGA
Found at i:72160924 original size:18 final size:18
Alignment explanation
Indices: 72160898--72160984 Score: 70
Period size: 18 Copynumber: 4.7 Consensus size: 18
72160888 ATTTTGGGGC
72160898 TTAATAATTTTACATAAT
1 TTAATAATTTTACATAAT
* *
72160916 TTGATAATTTTACCTAAT
1 TTAATAATTTTACATAAT
* * *
72160934 TTAATTAAAATTTT--TTGGAC
1 TTAA-T--AATTTTACAT-AAT
72160954 TTAATAATTTTACATAAT
1 TTAATAATTTTACATAAT
*
72160972 TTGATAATTTTAC
1 TTAATAATTTTAC
72160985 TAACCATTAA
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
17 6 0.11
18 32 0.60
19 4 0.08
20 5 0.09
21 6 0.11
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.51
Consensus pattern (18 bp):
TTAATAATTTTACATAAT
Found at i:72161200 original size:18 final size:18
Alignment explanation
Indices: 72161177--72161211 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
72161167 TTTGGACTTA
72161177 ATAATTTTACATAATTTG
1 ATAATTTTACATAATTTG
*
72161195 ATAATTTTACCTAATTT
1 ATAATTTTACATAATTT
72161212 AATTAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTTTACATAATTTG
Found at i:72161248 original size:10 final size:10
Alignment explanation
Indices: 72161233--72161259 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
72161223 TTTTGGCTTA
72161233 ATAATTTTAC
1 ATAATTTTAC
72161243 ATAATTTTAC
1 ATAATTTTAC
72161253 ATAATTT
1 ATAATTT
72161260 GATAATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:72161255 original size:66 final size:64
Alignment explanation
Indices: 72161177--72161322 Score: 195
Period size: 65 Copynumber: 2.2 Consensus size: 64
72161167 TTTGGACTTA
* * ** *
72161177 ATAATTTTACATAATTTGATAATTTTACCTAA-TTTAATTAAAATTTTTTTGGCTTAATAATTTT
1 ATAATTTTACATAATTTGATAATTTT-CCTAACATTAA-CAAAA-TTTTGAGACTTAATAATTTT
72161241 AC
63 AC
*
72161243 ATAATTTTACATAATTTGATAATTTTGCTAACCATTAACAAAATTTTGAGACTTAATAATTTTAC
1 ATAATTTTACATAATTTGATAATTTTCCTAA-CATTAACAAAATTTTGAGACTTAATAATTTTAC
72161308 ATAATTTTACATAAT
1 ATAATTTTACATAAT
72161323 GTTAGATTTG
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
65 38 0.53
66 30 0.42
67 4 0.06
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.47
Consensus pattern (64 bp):
ATAATTTTACATAATTTGATAATTTTCCTAACATTAACAAAATTTTGAGACTTAATAATTTTAC
Found at i:72161313 original size:10 final size:10
Alignment explanation
Indices: 72161298--72161322 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
72161288 TTGAGACTTA
72161298 ATAATTTTAC
1 ATAATTTTAC
72161308 ATAATTTTAC
1 ATAATTTTAC
72161318 ATAAT
1 ATAAT
72161323 GTTAGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (10 bp):
ATAATTTTAC
Done.