Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 234 of 313
Found at i:72164527 original size:122 final size:123
Alignment explanation
Indices: 72164217--72164565 Score: 576
Period size: 122 Copynumber: 2.8 Consensus size: 123
72164207 CCCAAACTTG
* *
72164217 CTACTGTAGCAAAATCGCATCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCTTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
72164282 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTTAAAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACG-T-CAAAAAAATTATTTCTTACATGAC
72164342 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
72164407 TAGAGGCAATTTTATACTATTTGCTCAGAAACGTCAAAAAAA-TATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGAC
* ** *
72164464 CTACTATAGCAAAATCATGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAACATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
72164529 TAGAAGCGATTTTATACTATTTGAC-CAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAACGTCAA
72164566 CTCAAAATAA
Statistics
Matches: 212, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
122 109 0.51
123 8 0.04
124 1 0.00
125 94 0.44
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (123 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTACATGAC
Found at i:72166754 original size:11 final size:11
Alignment explanation
Indices: 72166738--72166762 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
72166728 AACATTTGAG
72166738 AGATAAATGGT
1 AGATAAATGGT
72166749 AGATAAATGGT
1 AGATAAATGGT
72166760 AGA
1 AGA
72166763 GGGAAATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24
Consensus pattern (11 bp):
AGATAAATGGT
Found at i:72167372 original size:5 final size:5
Alignment explanation
Indices: 72167362--72167424 Score: 81
Period size: 5 Copynumber: 12.6 Consensus size: 5
72167352 TCATATATAT
* * * * *
72167362 ATTCC ATTCC ATACC ATTCC ATTCC ATACT ATTCC ATTTC ATACC ATTCC
1 ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC
72167412 ATTCC ATTCC ATT
1 ATTCC ATTCC ATT
72167425 TCATAAAGCA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.25, C:0.35, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTCC
Found at i:72167382 original size:15 final size:15
Alignment explanation
Indices: 72167362--72167424 Score: 99
Period size: 15 Copynumber: 4.2 Consensus size: 15
72167352 TCATATATAT
72167362 ATTCCATTCCATACC
1 ATTCCATTCCATACC
*
72167377 ATTCCATTCCATACT
1 ATTCCATTCCATACC
*
72167392 ATTCCATTTCATACC
1 ATTCCATTCCATACC
*
72167407 ATTCCATTCCATTCC
1 ATTCCATTCCATACC
72167422 ATT
1 ATT
72167425 TCATAAAGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.25, C:0.35, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTCCATTCCATACC
Found at i:72168873 original size:51 final size:50
Alignment explanation
Indices: 72168333--72168874 Score: 412
Period size: 51 Copynumber: 10.7 Consensus size: 50
72168323 TCGATACACG
* ** *
72168333 TAGTAGCCTTCACATAGTACTACACACGTGATCAATT-TTTACAGTTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGA-CCATTATTTATGGTTCACA
* * * *
72168383 TAATAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTACGGTTCACA
1 TAGTAGCCTTCACATAGTACTACACACGTGA-CCATTATTTATGGTTCACA
* * ** *
72168433 TAGTAGCCTTCACATAGTACTACATACGTGACTAATGCTTT-TCGGTACACA
1 TAGTAGCCTTCACATAGTACTACACACGTGAC-CATTATTTAT-GGTTCACA
* * * * * * **
72168484 TAGTAGTCTTCACTTAGTACTACATATGTGACCATCATTTGTCAATTCACA
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATTATTTAT-GGTTCACA
* * * * * *
72168535 TAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGCTTCTCGGTACATA
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATTA-TTTAT-GGTTCACA
* * * * *
72168586 TTGTAGCCTTCGCTTAGTACTACACATGTGACCATTATTTATGGATTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATTATTTATGG-TTCACA
* * * * * *
72168637 TAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGCTTCTCGGTACATA
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATTA-TTTAT-GGTTCACA
* * * * *
72168688 TTGTAGCCTTCGCTTAGTACTACACATGTGACCATTATTTATGGATTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATTATTTATGG-TTCACA
* * * * * *
72168739 TAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGCTTCTCGGTACATA
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATTA-TTTAT-GGTTCACA
* * * * *
72168790 TTGTAGCCTTCGCTTAGTACTACACATGTGACCATTATTTATGGATTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGACCATTATTTATGG-TTCACA
* *
72168841 TAGTAGCCTTCACACAGTACTACACACATGACCA
1 TAGTAGCCTTCACATAGTACTACACACGTGACCA
72168875 ACACTTTCAA
Statistics
Matches: 385, Mismatches: 92, Indels: 29
0.76 0.18 0.06
Matches are distributed among these distances:
49 1 0.00
50 91 0.24
51 286 0.74
52 7 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (50 bp):
TAGTAGCCTTCACATAGTACTACACACGTGACCATTATTTATGGTTCACA
Found at i:72168892 original size:102 final size:102
Alignment explanation
Indices: 72168329--72168875 Score: 751
Period size: 102 Copynumber: 5.4 Consensus size: 102
72168319 TCATTCGATA
* * * * * * ** **
72168329 CACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AA-TTTTTACAGTTCACGTAATAGCCT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACATATTGTAGCCT
* * * * * *
72168392 TCACATAGTACTACACACGTGATCAAGT-TTTACGG-TT
65 TCGCTTAGTACTACACATGTGA-CCATTATTTATGGATT
* * * * * * * * *
72168429 CACATAGTAGCCTTCACATAGTACTACATACGTGACTAATGCTTTTCGGTACACATAGTAGTCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTT
* * * * **
72168494 CACTTAGTACTACATATGTGACCATCATTTGTCAATT
66 CGCTTAGTACTACACATGTGACCATTATTTATGGATT
*
72168531 CACATAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTT
72168596 CGCTTAGTACTACACATGTGACCATTATTTATGGATT
66 CGCTTAGTACTACACATGTGACCATTATTTATGGATT
72168633 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTT
72168698 CGCTTAGTACTACACATGTGACCATTATTTATGGATT
66 CGCTTAGTACTACACATGTGACCATTATTTATGGATT
72168735 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTT
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTT
72168800 CGCTTAGTACTACACATGTGACCATTATTTATGGATT
66 CGCTTAGTACTACACATGTGACCATTATTTATGGATT
*
72168837 CACGTAGTAGCCTTCACACAGTACTACACACATGACCAA
1 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAA
72168876 CACTTTCAAT
Statistics
Matches: 406, Mismatches: 37, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
100 35 0.09
101 36 0.09
102 335 0.83
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (102 bp):
CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGTAGCCTT
CGCTTAGTACTACACATGTGACCATTATTTATGGATT
Found at i:72171214 original size:18 final size:19
Alignment explanation
Indices: 72171188--72171223 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
72171178 CTAATTTTTC
*
72171188 TTCCAAAACTATTTTTACT
1 TTCCAAAACTATTATTACT
72171207 TTCC-AAACTATTATTAC
1 TTCCAAAACTATTATTAC
72171224 CTCTGTATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (19 bp):
TTCCAAAACTATTATTACT
Found at i:72171695 original size:47 final size:48
Alignment explanation
Indices: 72171611--72171701 Score: 123
Period size: 47 Copynumber: 1.9 Consensus size: 48
72171601 GTTTTCACAT
* *
72171611 TGCCATAGTATGACTATGGTCTTACACAGAAATACAT-ATCACACTGA
1 TGCCATAGTATCACTATGGTCTTACACAGAAACACATAATCACACTGA
* *
72171658 TGCCATAGT-TCAGCTATGGTCTTATACAGAAGCACATAATCACA
1 TGCCATAGTATCA-CTATGGTCTTACACAGAAACACATAATCACA
72171702 TTTTCATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
46 2 0.05
47 30 0.79
48 6 0.16
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.27
Consensus pattern (48 bp):
TGCCATAGTATCACTATGGTCTTACACAGAAACACATAATCACACTGA
Found at i:72172760 original size:5 final size:5
Alignment explanation
Indices: 72172750--72172797 Score: 60
Period size: 5 Copynumber: 9.6 Consensus size: 5
72172740 TCATATATAT
* * * *
72172750 ATTCC ATTCC ATTCC ATACT ATTCC ATTTC ATACC ATTCC ATTCC ATT
1 ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATTCC ATT
72172798 TCATCAAGCA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (5 bp):
ATTCC
Found at i:72172775 original size:15 final size:15
Alignment explanation
Indices: 72172753--72172796 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
72172743 TATATATATT
72172753 CCATTCCATTCCATA
1 CCATTCCATTCCATA
* *
72172768 CTATTCCATTTCATA
1 CCATTCCATTCCATA
72172783 CCATTCCATTCCAT
1 CCATTCCATTCCAT
72172797 TTCATCAAGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39
Consensus pattern (15 bp):
CCATTCCATTCCATA
Found at i:72172798 original size:20 final size:20
Alignment explanation
Indices: 72172750--72172801 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
72172740 TCATATATAT
* * *
72172750 ATTCCATTCCATTCCATACT
1 ATTCCATTTCATACCATACC
*
72172770 ATTCCATTTCATACCATTCC
1 ATTCCATTTCATACCATACC
72172790 ATTCCATTTCAT
1 ATTCCATTTCAT
72172802 CAAGCATTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (20 bp):
ATTCCATTTCATACCATACC
Found at i:72173911 original size:51 final size:51
Alignment explanation
Indices: 72173695--72174246 Score: 402
Period size: 51 Copynumber: 10.9 Consensus size: 51
72173685 CTATTATCAT
* * * * *
72173695 TCAATACATGTAGTAGCCTTCACATAGTACTACACACGTGATC--AATTTT
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
** * * * *
72173744 TACGGTTCACGTAATAGCCTTCACATAGTACTACACACGTGATCA-AGTTT-
1 T-CAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
** * * * * * *
72173794 TACGGTTCACATAGTAGCCTTCACATAGTACAACATACATGA-C-TAATGCTTT
1 T-CAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAAT--TTA
** * * ** * * *
72173846 TCGGTACACATAGTAGCCTTCACTTAGTACTATACATGTGACCATCATTTA
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* *
72173897 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGATTC
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAA-TTTA
* * ** * ** * *
72173948 TCAGTACATATTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* * *
72173999 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGATTC
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAA-TTTA
* * ** * ** * *
72174050 TCAGTACATATTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
* * *
72174101 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCA-AAGATTC
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAA-TTTA
* * ** * ** * *
72174152 TCAGTACATATTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTA
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
*
72174203 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCA
1 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCA
72174247 ACACTTTCAC
Statistics
Matches: 389, Mismatches: 100, Indels: 26
0.76 0.19 0.05
Matches are distributed among these distances:
49 4 0.01
50 77 0.20
51 300 0.77
52 5 0.01
53 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (51 bp):
TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCATAATTTA
Found at i:72174264 original size:102 final size:102
Alignment explanation
Indices: 72173758--72174247 Score: 777
Period size: 102 Copynumber: 4.8 Consensus size: 102
72173748 GTTCACGTAA
* * * * * * *
72173758 TAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTA-CGGTTCACATAGTAGCCTTCACATA
1 TAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTATCGATTCACGTAGTAGCCTTCACACA
* * * * * * * * * *
72173821 GTACAACATACATGACTAATGCTTTTCGGTACACATAG
65 GTACTACACACGTGACCAAAGATTCTCAGTACATATTG
* * *
72173859 TAGCCTTCACTTAGTACTATACATGTGACCATCATTTATCAATTCACGTAGTAGCCTTCACACAG
1 TAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAGTAGCCTTCACACAG
72173924 TACTACACACGTGACCAAAGATTCTCAGTACATATTG
66 TACTACACACGTGACCAAAGATTCTCAGTACATATTG
72173961 TAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAGTAGCCTTCACACAG
1 TAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAGTAGCCTTCACACAG
72174026 TACTACACACGTGACCAAAGATTCTCAGTACATATTG
66 TACTACACACGTGACCAAAGATTCTCAGTACATATTG
72174063 TAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAGTAGCCTTCACACAG
1 TAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAGTAGCCTTCACACAG
72174128 TACTACACACGTGACCAAAGATTCTCAGTACATATTG
66 TACTACACACGTGACCAAAGATTCTCAGTACATATTG
72174165 TAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAGTAGCCTTCACACAG
1 TAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAGTAGCCTTCACACAG
72174230 TACTACACACGTGACCAA
66 TACTACACACGTGACCAA
72174248 CACTTTCACT
Statistics
Matches: 364, Mismatches: 23, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
100 2 0.01
101 29 0.08
102 333 0.91
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.30
Consensus pattern (102 bp):
TAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATTCACGTAGTAGCCTTCACACAG
TACTACACACGTGACCAAAGATTCTCAGTACATATTG
Found at i:72187231 original size:23 final size:23
Alignment explanation
Indices: 72187201--72187248 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
72187191 AGTTTTTGGA
72187201 TTAATTCTAATTGAAGAGGAATG
1 TTAATTCTAATTGAAGAGGAATG
*
72187224 TTAATTCTGATTGAAGAGGAATG
1 TTAATTCTAATTGAAGAGGAATG
72187247 TT
1 TT
72187249 CAAAGTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (23 bp):
TTAATTCTAATTGAAGAGGAATG
Found at i:72187526 original size:6 final size:6
Alignment explanation
Indices: 72187517--72187557 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
72187507 TAAAAGTGAT
72187517 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
72187558 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:72188849 original size:44 final size:43
Alignment explanation
Indices: 72188760--72189267 Score: 437
Period size: 44 Copynumber: 11.5 Consensus size: 43
72188750 GCAGATCAGT
* * *
72188760 GAAGATAGCAGGTCCTGTCTTCCTATATTGGT-AGCAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTGAG-AAGTAGATC
* *
72188804 GAAGATGCAGATCTTGTCTTCCCATATTGGTGATGGAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTGA-GAAGTAGATC
* * * * *
72188848 GAAGAAAGCAGATCTTGTCTTCGTTTATTGGCGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTGAGAAGTAGATC
* *
72188892 GAAGATAGCAGGTCCTGTCTTCCTATATTGG-GAGGAAGTAGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTGA-GAAGTAGATC
* * * * *
72188936 GAAGATGCAGATATTGTCTTCATGTATTGGCGTGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGTGAGAAGTAGATC
* * *
72188979 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGT-GAGAAGTAGATC
* * * *
72189024 GAAGATGCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGT-GAGAAGTAGATC
* * * * *
72189068 GAAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTGAGAAGTAGATC
* * * *
72189112 AAAGATAGCAGGTCCTGTCTTCCTATATTGGT-AGGAAGTGGATC
1 GAAGAT-GCAGATCTTGTCTTCCTATATTGGTGA-GAAGTAGATC
* * * *
72189156 GAAGATGCAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATC
1 GAAGATGCAGATCTTGTCTTCCTATATTGGT-GAGAAGTAGATC
* * * * * *
72189200 GAAGAAAGCAGATCTTCTCTTCATGTATTGGCGTGAAGTAGATC
1 GAAG-ATGCAGATCTTGTCTTCCTATATTGGTGAGAAGTAGATC
* * * *
72189244 AAATATAGCAAATCTTGCCTTCCT
1 GAAGAT-GCAGATCTTGTCTTCCT
72189268 GCACTGACAG
Statistics
Matches: 372, Mismatches: 77, Indels: 30
0.78 0.16 0.06
Matches are distributed among these distances:
43 81 0.22
44 211 0.57
45 80 0.22
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
GAAGATGCAGATCTTGTCTTCCTATATTGGTGAGAAGTAGATC
Found at i:72189018 original size:132 final size:130
Alignment explanation
Indices: 72188760--72189267 Score: 572
Period size: 132 Copynumber: 3.8 Consensus size: 130
72188750 GCAGATCAGT
* * * * * *
72188760 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGCAAGTGGATCGAAG-ATGCAGATCTTGTCTT
1 GAAGAT-GCAGATCCTGTCTTCCCATATTGG-GGGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*** * * * * * * * * *
72188824 CCCATATTGGTGATGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCGTTTATTGG-CGTGAAGTA
64 CATGTATTGGCG-TGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTG
72188888 GATC
127 GATC
* * * *
72188892 GAAGATAGCAGGTCCTGTCTTCCTATATTGGGAGGAAGTAGATCGAAG-ATGCAGATATTGTCTT
1 GAAGAT-GCAGATCCTGTCTTCCCATATTGGG-GGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
*
72188956 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGG
64 CATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGG
72189021 ATC
128 ATC
* * *
72189024 GAAGATGCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
1 GAAGATGCAGATCCTGTCTTCCCATA-TTG-GGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* *
72189089 CATCTATTGGCGTGAAGTAGATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGA
64 CATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGA
72189154 TC
129 TC
* * * *
72189156 GAAGATGCAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTCTCTT
1 GAAGATGCAGATCCTGTCTTCCCATATTGG-GG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTT
* * * *
72189221 CATGTATTGGCGTGAAGTAGATCAAATATAGCAAATCTTGCCTTCCT
64 CATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCT
72189268 GCACTGACAG
Statistics
Matches: 332, Mismatches: 37, Indels: 14
0.87 0.10 0.04
Matches are distributed among these distances:
130 1 0.00
131 56 0.17
132 205 0.62
133 70 0.21
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (130 bp):
GAAGATGCAGATCCTGTCTTCCCATATTGGGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCA
TGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATC
Found at i:72189141 original size:220 final size:220
Alignment explanation
Indices: 72188760--72189213 Score: 712
Period size: 220 Copynumber: 2.1 Consensus size: 220
72188750 GCAGATCAGT
*
72188760 GAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGCAAGTGGATCGAAGATGCAGATCTTGTCTTC
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCAAGTGGATCGAAGATGCAGATCTTGTCTTC
* * * * * *
72188825 CCATATTGGTGATGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCGTTTATTGGCGTGAAGTAGA
66 CCATACTAGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAGA
* *
72188890 TCGAAGATAGCAGGTCCTGTCTTCCTATATTGGGAGGAAGTAGATCGAAGATGCAGATATTGTCT
131 TCAAAGATAGCAGGTCCTGTCTTCCTATATTGGGAGGAAGTAGATCGAAGATGCAGATATTATCT
** * *
72188955 TCATGTATTGG-CGTGAAGTAGATC
196 TCACATACTGGTCGCGAAGTAGATC
72188979 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGC-AAGTGGATCGAAGATGCAGATCTTGTCTT
*
72189044 CCCATACTAGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAG
65 CCCATACTAGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAG
* * *
72189109 ATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTATC
130 ATCAAAGATAGCAGGTCCTGTCTTCCTATATTGGGAGGAAGTAGATCGAAGATGCAGATATTATC
* *
72189174 TTCCCATACTGGTGGCGAAGTAGATC
195 TTCACATACTGGTCGCGAAGTAGATC
*
72189200 GAAGAAAGCAGATC
1 GAAGATAGCAGATC
72189214 TTCTCTTCAT
Statistics
Matches: 213, Mismatches: 20, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
219 34 0.16
220 155 0.73
221 24 0.11
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.29
Consensus pattern (220 bp):
GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCAAGTGGATCGAAGATGCAGATCTTGTCTTC
CCATACTAGTGACGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATCTATTGGCGTGAAGTAGA
TCAAAGATAGCAGGTCCTGTCTTCCTATATTGGGAGGAAGTAGATCGAAGATGCAGATATTATCT
TCACATACTGGTCGCGAAGTAGATC
Found at i:72189290 original size:45 final size:45
Alignment explanation
Indices: 72189234--72189379 Score: 118
Period size: 44 Copynumber: 3.3 Consensus size: 45
72189224 GTATTGGCGT
* *
72189234 GAAGTAGATCAAATATAGCAAATCTTGCCTTCCTGCACTGACAGC
1 GAAGCAGATCAAAAATAGCAAATCTTGCCTTCCTGCACTGACAGC
* * * ** * ***
72189279 GAAGCAGATCAAAGACA-CCAGCCTTGCCTCCCTGGGTTG-CAGC
1 GAAGCAGATCAAAAATAGCAAATCTTGCCTTCCTGCACTGACAGC
* * * * *
72189322 GGAGCAG-GCTAAAAATAGTAGATCTTGCCTTCCTGCACCGACAGC
1 GAAGCAGATC-AAAAATAGCAAATCTTGCCTTCCTGCACTGACAGC
72189367 GAAGCAGATCAAA
1 GAAGCAGATCAAA
72189380 GACACCGGCC
Statistics
Matches: 71, Mismatches: 26, Indels: 8
0.68 0.25 0.08
Matches are distributed among these distances:
42 1 0.01
43 15 0.21
44 27 0.38
45 27 0.38
46 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.19
Consensus pattern (45 bp):
GAAGCAGATCAAAAATAGCAAATCTTGCCTTCCTGCACTGACAGC
Found at i:72189393 original size:44 final size:44
Alignment explanation
Indices: 72189257--72189395 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
72189247 TATAGCAAAT
*
72189257 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAGC
1 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCGGC
* *** * * * * ** **
72189301 CTTGCCTCCCTGGGTTG-CAGCGGAGCAG-GCTAAAAATAGTAGAT
1 CTTGCCTTCCTGCACTGACAGCGAAGCAGATC-AAAGACA-CCGGC
*
72189345 CTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCGGC
1 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCGGC
72189389 CTTGCCT
1 CTTGCCT
72189396 CCTAAGGTTG
Statistics
Matches: 65, Mismatches: 26, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
42 1 0.02
43 15 0.23
44 33 0.51
45 15 0.23
46 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.19
Consensus pattern (44 bp):
CTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCGGC
Found at i:72189510 original size:88 final size:88
Alignment explanation
Indices: 72189255--72189464 Score: 350
Period size: 88 Copynumber: 2.4 Consensus size: 88
72189245 AATATAGCAA
* *
72189255 ATCTTGCCTTCCTGCACTGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTTGCA
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTGCA
* *
72189320 GCGGAGCAGGCTAAAAATAGTAG
66 GTGGAGCAGGTTAAAAATAGTAG
*
72189343 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCGGCCTTGCCT-CCTAAGGTTGC
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCT-AGGTTGC
72189407 AGTGGAGCAGGTTAAAAATAGTAG
65 AGTGGAGCAGGTTAAAAATAGTAG
*
72189431 ATCTTGCCTTCCTGTACCGACAGCGAAGCAGATC
1 ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATC
72189465 GATGACCTCA
Statistics
Matches: 115, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
87 3 0.03
88 112 0.97
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.20
Consensus pattern (88 bp):
ATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTAGGTTGCA
GTGGAGCAGGTTAAAAATAGTAG
Found at i:72190064 original size:256 final size:256
Alignment explanation
Indices: 72189518--72190068 Score: 897
Period size: 256 Copynumber: 2.1 Consensus size: 256
72189508 AAAGATTGTG
**
72189518 AATTCTACTTCCCTGGACAACAAAGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AATTCTACTTCCCTGGACAACAGTGGAATAGATT---GA----AGA-CTTATCTCCCTAAGCAGT
*
72189583 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
58 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
72189648 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
123 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCA
* *
72189713 GTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGC
188 GTAGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGC
72189778 CAGT
253 CAGT
*
72189782 AATTCTACTTCTCTGGACAACAGTGGAATAGATTGAAGACTTATCTCCCTAAGCAGTAGTGGAGC
1 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGACTTATCTCCCTAAGCAGTAGTGGAGC
* *
72189847 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTAGTAATTCT
66 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
*
72189912 ACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGA
131 ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGA
*
72189977 GCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGCCAGT
196 GCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGCCAGT
** *
72190038 AATTCTA-TCTCCCTGTTCAGCAGTGGAATAG
1 AATTCTACT-TCCCTGGACAACAGTGGAATAG
72190069 GTTGTAAGGT
Statistics
Matches: 272, Mismatches: 14, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
255 1 0.00
256 235 0.86
257 3 0.01
261 2 0.01
264 31 0.11
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (256 bp):
AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGACTTATCTCCCTAAGCAGTAGTGGAGC
AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCT
ACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGA
GCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGCCAGT
Found at i:72190095 original size:132 final size:132
Alignment explanation
Indices: 72189518--72190068 Score: 913
Period size: 132 Copynumber: 4.2 Consensus size: 132
72189508 AAAGATTGTG
**
72189518 AATTCTACTTCCCTGGACAACAAAGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
*
72189583 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
66 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
72189648 GT
131 GT
72189650 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
*
72189715 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
66 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
72189780 GT
131 GT
*
72189782 AATTCTACTTCTCTGGACAACAGTGGAATAGATT---GA----AGA-CTTATCTCCCTAAGCAGT
1 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
* *
72189839 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCTA
66 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
72189904 GT
131 GT
*
72189906 AATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
1 AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
* *
72189971 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTAGAGTACATTGAAGCCA
66 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
72190036 GT
131 GT
** *
72190038 AATTCTA-TCTCCCTGTTCAGCAGTGGAATAG
1 AATTCTACT-TCCCTGGACAACAGTGGAATAG
72190069 GTTGTAAGGT
Statistics
Matches: 395, Mismatches: 15, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
124 116 0.29
125 3 0.01
127 2 0.01
129 2 0.01
131 4 0.01
132 268 0.68
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (132 bp):
AATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GT
Found at i:72190349 original size:19 final size:19
Alignment explanation
Indices: 72190309--72190353 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
72190299 CATGCATATT
*
72190309 AAATAAATAAAAATATAAA
1 AAATAAATAAAAACATAAA
*
72190328 AAATAAATAAAACCA-AATA
1 AAATAAATAAAAACATAA-A
72190347 AAATAAA
1 AAATAAA
72190354 ATCCAGTCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (19 bp):
AAATAAATAAAAACATAAA
Found at i:72193282 original size:29 final size:29
Alignment explanation
Indices: 72193249--72193307 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
72193239 TAAAAGCTAC
72193249 ATGAATG-CATG-AAATAGATAAAAATCAAA
1 ATGAATGACATGAAAATAG--AAAAATCAAA
72193278 ATGAATGATCATGAAAATAGAAAAATCAAA
1 ATGAATGA-CATGAAAATAGAAAAATCAAA
72193308 GCTTGGAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 7 0.26
30 10 0.37
31 4 0.15
32 6 0.22
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.20
Consensus pattern (29 bp):
ATGAATGACATGAAAATAGAAAAATCAAA
Found at i:72212543 original size:42 final size:41
Alignment explanation
Indices: 72212497--72212626 Score: 118
Period size: 42 Copynumber: 3.1 Consensus size: 41
72212487 GTCTTTTTAC
72212497 AAATGCCACAAAAGATCATGTTCTTTAGCGGCGTTTGTAGTA
1 AAATGCCACAAAAGATCATGTT-TTTAGCGGCGTTTGTAGTA
*** *
72212539 AAATGTCGTTAAAA-ATCATGTTTTATAGCGGTGTTTGTAGTA
1 AAATG-CCACAAAAGATCATGTTTT-TAGCGGCGTTTGTAGTA
** * * * *
72212581 AAACCACCGCTAAAGATCATGTTATTTAGCGGCATTTGTTGTA
1 AAA-TGCCACAAAAGATCATGTT-TTTAGCGGCGTTTGTAGTA
72212624 AAA
1 AAA
72212627 GCGTCGCTAA
Statistics
Matches: 70, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.03
42 36 0.51
43 30 0.43
44 2 0.03
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (41 bp):
AAATGCCACAAAAGATCATGTTTTTAGCGGCGTTTGTAGTA
Found at i:72212654 original size:43 final size:42
Alignment explanation
Indices: 72212507--72212662 Score: 159
Period size: 43 Copynumber: 3.7 Consensus size: 42
72212497 AAATGCCACA
* * * *
72212507 AAAGATCATGTTCTTTAGCGGCGTTTGTAGTAAAATGTCGTT
1 AAAGATCATGTTCTATAGCGGCATTTGTAGTAAAACGTCGCT
* * ** **
72212549 AAAAATCATGTTTTATAGCGGTGTTTGTAGTAAAACCACCGCT
1 AAAGATCATGTTCTATAGCGGCATTTGTAGTAAAA-CGTCGCT
* * *
72212592 AAAGATCATGTTATTTAGCGGCATTTGTTGTAAAAGCGTCGCT
1 AAAGATCATGTTCTATAGCGGCATTTGTAGTAAAA-CGTCGCT
* *
72212635 AAAGACCATGTTCTATAGCGTCATTTGT
1 AAAGATCATGTTCTATAGCGGCATTTGT
72212663 GAGAAAATGC
Statistics
Matches: 92, Mismatches: 21, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 31 0.34
43 61 0.66
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (42 bp):
AAAGATCATGTTCTATAGCGGCATTTGTAGTAAAACGTCGCT
Found at i:72212676 original size:85 final size:84
Alignment explanation
Indices: 72212497--72212678 Score: 197
Period size: 85 Copynumber: 2.1 Consensus size: 84
72212487 GTCTTTTTAC
* * * * * * * *
72212497 AAATGCCACAAAAGATCATGTTCTTTAGCGGCGTTTGTAGTAAAATGTCGTTAAAAATCATGTTT
1 AAATGCCGCTAAAGATCATGTTATTTAGCGGCATTTGTAGTAAAACGTCGCTAAAAACCATGTTC
*
72212562 TATAGCGGTGTTTGTAGTA
66 TATAGCGGTATTTGTAGTA
** * *
72212581 AAACCACCGCTAAAGATCATGTTATTTAGCGGCATTTGTTGTAAAAGCGTCGCTAAAGACCATGT
1 AAA-TGCCGCTAAAGATCATGTTATTTAGCGGCATTTGTAGTAAAA-CGTCGCTAAAAACCATGT
72212646 TCTATAGC-GTCATTTGTGAG-A
64 TCTATAGCGGT-ATTTGT-AGTA
72212667 AAATGCCGCTAA
1 AAATGCCGCTAA
72212679 CATTAATAGA
Statistics
Matches: 79, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
84 3 0.04
85 44 0.56
86 30 0.38
87 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (84 bp):
AAATGCCGCTAAAGATCATGTTATTTAGCGGCATTTGTAGTAAAACGTCGCTAAAAACCATGTTC
TATAGCGGTATTTGTAGTA
Found at i:72213018 original size:21 final size:20
Alignment explanation
Indices: 72212977--72213023 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
72212967 ATTTTCTTGT
**
72212977 TGCCTCTGCTCCCTTGCTGC
1 TGCCTCTGCTCCCTCACTGC
*
72212997 TGCCTCTGCTTCCCTCATTGC
1 TGCCTCTGC-TCCCTCACTGC
72213018 TGCCTC
1 TGCCTC
72213024 CACTTTAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.02, C:0.45, G:0.17, T:0.36
Consensus pattern (20 bp):
TGCCTCTGCTCCCTCACTGC
Found at i:72214041 original size:15 final size:16
Alignment explanation
Indices: 72214021--72214050 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72214011 GGTCTCTTAA
72214021 TTTCTTTAC-TAATTC
1 TTTCTTTACATAATTC
72214036 TTTCTTTACATAATT
1 TTTCTTTACATAATT
72214051 ATCCTAGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTCTTTACATAATTC
Found at i:72215009 original size:34 final size:35
Alignment explanation
Indices: 72214965--72215031 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
72214955 TAGTAAAATA
72214965 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
72214999 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
72215032 CTGGTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:72216725 original size:27 final size:27
Alignment explanation
Indices: 72216686--72216920 Score: 263
Period size: 27 Copynumber: 8.6 Consensus size: 27
72216676 ATTCGTGGGC
72216686 AAATGACCGAATTACCCCCAAAGGGTA
1 AAATGACCGAATTACCCCCAAAGGGTA
* * * *
72216713 AAATGACCAAATTATCCCCGAAGGATA
1 AAATGACCGAATTACCCCCAAAGGGTA
** * *
72216740 AAATGATTGAATTACCCCTAAGGGGTA
1 AAATGACCGAATTACCCCCAAAGGGTA
* *
72216767 AAATGACCGAATTACCCTCGAAGGGTA
1 AAATGACCGAATTACCCCCAAAGGGTA
* * *
72216794 AAATGACCAAATTACCCCCTGAAGGTTA
1 AAATGACCGAATTACCCCC-AAAGGGTA
*
72216822 AAATGATCGAATTACCCCCAAAGGGTA
1 AAATGACCGAATTACCCCCAAAGGGTA
* *
72216849 AAATGACTGAATTACCCCCAAAGGTTA
1 AAATGACCGAATTACCCCCAAAGGGTA
** *
72216876 AAATGACTAAATTACCCCCCGAAGGGTA
1 AAATGACCGAATTA-CCCCCAAAGGGTA
* *
72216904 AAATGACCAAAATACCC
1 AAATGACCGAATTACCC
72216921 TTGTAAGGTA
Statistics
Matches: 173, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
27 126 0.73
28 47 0.27
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACCGAATTACCCCCAAAGGGTA
Found at i:72216920 original size:82 final size:82
Alignment explanation
Indices: 72216686--72216909 Score: 333
Period size: 82 Copynumber: 2.7 Consensus size: 82
72216676 ATTCGTGGGC
* *
72216686 AAATGACCGAATTACCCCCAAAGGGTAAAATGACCAAATTA-TCCCCGAAGGATAAAATGATTGA
1 AAATGACCGAATTACCCCCAAAGGGTAAAATGACCAAATTACCCCCCGAAGGATAAAATGATCGA
* *
72216750 ATTACCCCTAAGGGGTA
66 ATTACCCCCAAAGGGTA
* * * *
72216767 AAATGACCGAATTACCCTCGAAGGGTAAAATGACCAAATTACCCCCTGAAGGTTAAAATGATCGA
1 AAATGACCGAATTACCCCCAAAGGGTAAAATGACCAAATTACCCCCCGAAGGATAAAATGATCGA
72216832 ATTACCCCCAAAGGGTA
66 ATTACCCCCAAAGGGTA
* * * *
72216849 AAATGACTGAATTACCCCCAAAGGTTAAAATGACTAAATTACCCCCCGAAGGGTAAAATGA
1 AAATGACCGAATTACCCCCAAAGGGTAAAATGACCAAATTACCCCCCGAAGGATAAAATGA
72216910 CCAAAATACC
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
81 39 0.31
82 88 0.69
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.20
Consensus pattern (82 bp):
AAATGACCGAATTACCCCCAAAGGGTAAAATGACCAAATTACCCCCCGAAGGATAAAATGATCGA
ATTACCCCCAAAGGGTA
Found at i:72216947 original size:55 final size:53
Alignment explanation
Indices: 72216686--72216948 Score: 217
Period size: 54 Copynumber: 4.8 Consensus size: 53
72216676 ATTCGTGGGC
* ** * * * *
72216686 AAATGACCGAATTACCCCCAAAGGGTAAAATGACCAAATTATCCCCGAAGGATA
1 AAATGACCAAATTA-CCCTGAAGGTTAAAATGACCGAATTACCCCCGAAGGGTA
*** * *
72216740 AAATGATTGAATTACCCCT-AAGGGGTAAAATGACCGAATTACCCTCGAAGGGTA
1 AAATGACCAAATTA-CCCTGAA-GGTTAAAATGACCGAATTACCCCCGAAGGGTA
* *
72216794 AAATGACCAAATTACCCCCTGAAGGTTAAAATGATCGAATTACCCCCAAAGGGTA
1 AAATGACCAAATTA--CCCTGAAGGTTAAAATGACCGAATTACCCCCGAAGGGTA
** ** **
72216849 AAATGACTGAATTACCCCCAAAGGTTAAAATGACTAAATTACCCCCCGAAGGGTA
1 AAATGACCAAATTA-CCCTGAAGGTTAAAATGACCGAATTA-CCCCCGAAGGGTA
* *
72216904 AAATGACCAAAATACCCTTGTAAGG-TAGAATGACCGTAA-TACCCC
1 AAATGACCAAATTACCC-TG-AAGGTTAAAATGACCG-AATTACCCC
72216949 TTGAGGATAA
Statistics
Matches: 172, Mismatches: 30, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
53 2 0.01
54 84 0.49
55 78 0.45
56 8 0.05
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (53 bp):
AAATGACCAAATTACCCTGAAGGTTAAAATGACCGAATTACCCCCGAAGGGTA
Found at i:72217033 original size:24 final size:24
Alignment explanation
Indices: 72216980--72217033 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
72216970 GCCCTCGAGG
72216980 TTAAATGATCGATTTGTCCGTGAT
1 TTAAATGATCGATTTGTCCGTGAT
** * **
72217004 GAAAATGATTGATTTGTTTGTGAT
1 TTAAATGATCGATTTGTCCGTGAT
72217028 TTAAAT
1 TTAAAT
72217034 AACTATTTTG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.06, G:0.20, T:0.44
Consensus pattern (24 bp):
TTAAATGATCGATTTGTCCGTGAT
Found at i:72217175 original size:26 final size:26
Alignment explanation
Indices: 72217120--72217175 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
72217110 TTCTGATTAC
* * *
72217120 TGGCAGCTTTGCTGTGATACTGTTGG
1 TGGCAGCTTTGCTGCGATACTGCTGA
*
72217146 TGGCAGCTTTGCTGCGATGCTGCTGA
1 TGGCAGCTTTGCTGCGATACTGCTGA
72217172 TGGC
1 TGGC
72217176 TTTGTGCCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.11, C:0.20, G:0.36, T:0.34
Consensus pattern (26 bp):
TGGCAGCTTTGCTGCGATACTGCTGA
Found at i:72217207 original size:32 final size:32
Alignment explanation
Indices: 72217168--72217318 Score: 153
Period size: 32 Copynumber: 4.8 Consensus size: 32
72217158 TGCGATGCTG
* * *
72217168 CTGATGGCTTTGTGCCGGTCATATTACCGTTG
1 CTGATGGCTTTGTGCCGATCATATTACCGCTA
* * *
72217200 CTGATGGCTGTGTGCCGATCATATCACTGCTA
1 CTGATGGCTTTGTGCCGATCATATTACCGCTA
* * **
72217232 TTGATGGCTTTGTACCGATCATATTACCATTA
1 CTGATGGCTTTGTGCCGATCATATTACCGCTA
* * *
72217264 C-GATGG-TTGTGCGCCGATCATATTGCTGCTA
1 CTGATGGCTT-TGTGCCGATCATATTACCGCTA
*
72217295 CTGATGGCTTTGTGCCAATCATAT
1 CTGATGGCTTTGTGCCGATCATAT
72217319 AACTGTATTT
Statistics
Matches: 94, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
30 2 0.02
31 22 0.23
32 68 0.72
33 2 0.02
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.36
Consensus pattern (32 bp):
CTGATGGCTTTGTGCCGATCATATTACCGCTA
Found at i:72217294 original size:63 final size:64
Alignment explanation
Indices: 72217163--72217318 Score: 206
Period size: 63 Copynumber: 2.5 Consensus size: 64
72217153 TTTGCTGCGA
* * * * *
72217163 TGCTGCTGATGGCTTTGTGCCGGTCATATTACCGTTGCTGATGGCTGTGTGCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTGCGCCGATCATATCAC
* * * **
72217227 TGCTATTGATGGCTTTGTACCGATCATATTACCATTAC-GATGGTTGTGCGCCGATCATATTGC
1 TGCTACTGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTGCGCCGATCATATCAC
*
72217290 TGCTACTGATGGCTTTGTGCCAATCATAT
1 TGCTACTGATGGCTTTGTGCCGATCATAT
72217319 AACTGTATTT
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
63 47 0.59
64 32 0.41
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (64 bp):
TGCTACTGATGGCTTTGTGCCGATCATATTACCATTACTGATGGCTGTGCGCCGATCATATCAC
Found at i:72217607 original size:28 final size:28
Alignment explanation
Indices: 72217551--72217607 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
72217541 ACTGTACCGA
*
72217551 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACACTGT
*
72217579 TACTGTATTGGGCTAAGGCCCATACTGT
1 TACTGTATTGGGCTAAGGCCCACACTGT
72217607 T
1 T
72217608 GCTGCATGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACACTGT
Found at i:72226874 original size:25 final size:25
Alignment explanation
Indices: 72226819--72226879 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
72226809 TTTTAAGTGT
* * *
72226819 TTTCAGTATAGTCTATCTATAGTAG
1 TTTCAGTATATTCTACCTATAGCAG
* *
72226844 TCTCAGTATATTCTACCTGTAGCAG
1 TTTCAGTATATTCTACCTATAGCAG
*
72226869 TTTCAGGATAT
1 TTTCAGTATAT
72226880 ACTATCCAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (25 bp):
TTTCAGTATATTCTACCTATAGCAG
Found at i:72232410 original size:40 final size:40
Alignment explanation
Indices: 72232265--72232410 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
72232255 GCTCCTCGTT
* * *
72232265 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
72232305 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
* * *
72232345 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
72232386 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72232411 CATCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.03
40 75 0.83
41 12 0.13
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:72240327 original size:79 final size:82
Alignment explanation
Indices: 72240216--72240400 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
72240206 GCTACTCGTT
* *
72240216 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
72240279 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
72240296 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
72240359 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
72240376 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72240401 CATCATTCGA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:72240400 original size:40 final size:40
Alignment explanation
Indices: 72240197--72240400 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
72240187 CGGAATTTAA
** *
72240197 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72240237 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
72240277 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
72240316 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
72240356 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
72240396 CCGGA
1 CCGGA
72240401 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:72241597 original size:56 final size:56
Alignment explanation
Indices: 72241530--72241761 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
72241520 TATTAGTTTA
* *
72241530 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
72241586 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
72241642 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
72241698 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
72241754 TTGCCCAT
1 TTGCCCAT
72241762 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:72243662 original size:23 final size:23
Alignment explanation
Indices: 72243636--72243701 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
72243626 TTGAACCATA
**
72243636 ACCATTTCATACCAAATCGTATT
1 ACCATTTCATACCAAATCACATT
72243659 ACCATTTCGA-ACCAAATCACATT
1 ACCATTTC-ATACCAAATCACATT
*
72243682 ACCATTTCATAACAAA-CACA
1 ACCATTTCATACCAAATCACA
72243702 AAACCAAACT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
22 5 0.13
23 32 0.84
24 1 0.03
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.27
Consensus pattern (23 bp):
ACCATTTCATACCAAATCACATT
Found at i:72246739 original size:22 final size:23
Alignment explanation
Indices: 72246702--72246769 Score: 79
Period size: 22 Copynumber: 3.0 Consensus size: 23
72246692 TTATGGTTAC
72246702 TTAAGTGTTCTAAATAGATTTAA
1 TTAAGTGTTCTAAATAGATTTAA
* *
72246725 TTCA-TGTT-TATAATATGA-TTAC
1 TTAAGTGTTCTA-AATA-GATTTAA
72246747 TTAAGTGTTCTAAATAGATTTAA
1 TTAAGTGTTCTAAATAGATTTAA
72246770 GTCAAATTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
21 2 0.06
22 16 0.44
23 16 0.44
24 2 0.06
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.46
Consensus pattern (23 bp):
TTAAGTGTTCTAAATAGATTTAA
Found at i:72246755 original size:23 final size:23
Alignment explanation
Indices: 72246688--72246766 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 23
72246678 AAGTTGACAA
*
72246688 TAAATTATGGTTACTTAAGTGTTC
1 TAAA-TATGATTACTTAAGTGTTC
* *
72246712 TAAATA-GATTTAATTCA-TGTT-
1 TAAATATGA-TTACTTAAGTGTTC
72246733 TATAATATGATTACTTAAGTGTTC
1 TA-AATATGATTACTTAAGTGTTC
72246757 TAAATA-GATT
1 TAAATATGATT
72246767 TAAGTCAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
21 2 0.04
22 19 0.42
23 18 0.40
24 6 0.13
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.46
Consensus pattern (23 bp):
TAAATATGATTACTTAAGTGTTC
Found at i:72250367 original size:41 final size:40
Alignment explanation
Indices: 72250274--72250374 Score: 148
Period size: 40 Copynumber: 2.5 Consensus size: 40
72250264 GAAAAATGGT
* *
72250274 GCTATTGCTTTACCATTAGCGGCGTTTATGAAAAAACACA
1 GCTATTGCTTTACCTTTTGCGGCGTTTATGAAAAAACACA
* *
72250314 GCTATTGTTTTACCTTTTGCGGCGTTTATGAGAAAAACACC
1 GCTATTGCTTTACCTTTTGCGGCGTTTATGA-AAAAACACA
*
72250355 GCTACTGCTTTACCTTTTGC
1 GCTATTGCTTTACCTTTTGC
72250375 AGCTTTTTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
40 28 0.52
41 26 0.48
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (40 bp):
GCTATTGCTTTACCTTTTGCGGCGTTTATGAAAAAACACA
Found at i:72251870 original size:19 final size:19
Alignment explanation
Indices: 72251843--72251880 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
72251833 TAAAATCAAT
72251843 TTTTCTAAAAATATT-TTTA
1 TTTTCT-AAAATATTATTTA
*
72251862 TTTTGTAAAATATTATTTA
1 TTTTCTAAAATATTATTTA
72251881 CCAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTCTAAAATATTATTTA
Found at i:72256385 original size:16 final size:15
Alignment explanation
Indices: 72256364--72256407 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
72256354 TTTTAAAGGT
*
72256364 TAATTAAGTAATTTGA
1 TAATTAAGTAA-ATGA
*
72256380 TAATTAAGTTAAATGT
1 TAATTAAG-TAAATGA
72256396 TAATTAAGTAAA
1 TAATTAAGTAAA
72256408 AGACGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.16
16 18 0.72
17 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (15 bp):
TAATTAAGTAAATGA
Found at i:72256398 original size:32 final size:31
Alignment explanation
Indices: 72256335--72256406 Score: 92
Period size: 32 Copynumber: 2.3 Consensus size: 31
72256325 TGGATAGGTT
*
72256335 TTAATGTAATTATGATAATTTTTAAAGGTTAA
1 TTAA-GTAATTATGATAATTGTTAAAGGTTAA
*
72256367 TTAAGTAATT-TGATAATTAAGTTAAATGTTAA
1 TTAAGTAATTATGATAATT--GTTAAAGGTTAA
72256399 TTAAGTAA
1 TTAAGTAA
72256407 AAGACGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
30 8 0.22
31 6 0.17
32 22 0.61
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.44
Consensus pattern (31 bp):
TTAAGTAATTATGATAATTGTTAAAGGTTAA
Found at i:72257207 original size:40 final size:39
Alignment explanation
Indices: 72257150--72257292 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 39
72257140 ATACACTTAT
72257150 GTGCCCCTGTGTGTACTTCGGTACCCCTAATTTCACATAC
1 GTGCCCCTGT-TGTACTTCGGTACCCCTAATTTCACATAC
* * *
72257190 GTGCCCCTAGTTTTACTTCAGTACCCCTGAA-TGCACATAC
1 GTGCCCCT-GTTGTACTTCGGTACCCCT-AATTTCACATAC
* * *
72257230 GTGCCCATGTTTGTACTTTGGTACCCCTAATTGT-AGATAC
1 GTGCCCCTG-TTGTACTTCGGTACCCCTAATT-TCACATAC
*
72257270 GTGCCCCTGGTTGTACTTTGGTA
1 GTGCCCCT-GTTGTACTTCGGTA
72257293 ATCCTGAATT
Statistics
Matches: 87, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
39 3 0.03
40 79 0.91
41 5 0.06
ACGTcount: A:0.18, C:0.28, G:0.20, T:0.34
Consensus pattern (39 bp):
GTGCCCCTGTTGTACTTCGGTACCCCTAATTTCACATAC
Found at i:72257299 original size:80 final size:80
Alignment explanation
Indices: 72257150--72257301 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
72257140 ATACACTTAT
* * *
72257150 GTGCCCCTGTGTGTACTTCGGTACCCCTAATTTCACATACGTGCCCCTAGTTTTACTTCAGTACC
1 GTGCCCATGTGTGTACTTCGGTACCCCTAATTTCACATACGTGCCCCTAGTTGTACTTCAGTAAC
72257215 CCTGAATGCACATAC
66 CCTGAATGCACATAC
* * * * **
72257230 GTGCCCATGTTTGTACTTTGGTACCCCTAATTGT-AGATACGTGCCCCTGGTTGTACTTTGGTAA
1 GTGCCCATGTGTGTACTTCGGTACCCCTAATT-TCACATACGTGCCCCTAGTTGTACTTCAGTAA
*
72257294 TCCTGAAT
65 CCCTGAAT
72257302 TAAATAATAT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 60 0.98
81 1 0.02
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (80 bp):
GTGCCCATGTGTGTACTTCGGTACCCCTAATTTCACATACGTGCCCCTAGTTGTACTTCAGTAAC
CCTGAATGCACATAC
Found at i:72259452 original size:50 final size:50
Alignment explanation
Indices: 72259349--72259638 Score: 312
Period size: 50 Copynumber: 5.7 Consensus size: 50
72259339 TAAAGAGATT
* *
72259349 CCATGTAAGACCATGTCTGGGACATGACATTAGCATCCTTGAGATCATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA--C-TGAG---ATGAGAGGTC
* *
72259405 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGACGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTC
* *
72259455 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATGGGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTC
** * * * * **
72259505 CCCCGTAAGACCATGTCTGTGACATGGCATGGGCACCGATATGAGAACTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTC
* * * * * **
72259555 CCATGTAAGACCATATCTGGGATATGGCATTGGCAGT-ACATGAAACATC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTC
* *
72259604 CCATGTAATACCATGTCTGGGACATGGCTTTGGCA
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA
72259639 TGTTATTATC
Statistics
Matches: 202, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
49 39 0.19
50 126 0.62
53 4 0.02
54 1 0.00
56 32 0.16
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGTC
Found at i:72265070 original size:24 final size:24
Alignment explanation
Indices: 72265036--72265125 Score: 92
Period size: 24 Copynumber: 3.8 Consensus size: 24
72265026 TATCTATGAC
* *
72265036 GCCTTTTTGGTGTATTCTATTAAT
1 GCCTTTATGGTGTATTCTATAAAT
72265060 GCCTTTATGGTGTATTCTATAAAT
1 GCCTTTATGGTGTATTCTATAAAT
* * * *
72265084 ACC-CTATTGGCGTTTTCTATAAAT
1 GCCTTTA-TGGTGTATTCTATAAAT
* *
72265108 TCCTTTGTGGTGTATTCT
1 GCCTTTATGGTGTATTCT
72265126 GTGTTGCCTT
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
23 2 0.04
24 50 0.94
25 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.17, T:0.49
Consensus pattern (24 bp):
GCCTTTATGGTGTATTCTATAAAT
Found at i:72267325 original size:19 final size:20
Alignment explanation
Indices: 72267301--72267343 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
72267291 GCATTAGAAC
72267301 TTTTATTTT-TATTTACTTA-
1 TTTTATTTTAT-TTTACTTAG
72267320 TTTTATTTTATTTTACTTAG
1 TTTTATTTTATTTTACTTAG
72267340 TTTT
1 TTTT
72267344 TTAATCACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTATTTTATTTTACTTAG
Found at i:72272377 original size:14 final size:13
Alignment explanation
Indices: 72272358--72272391 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
72272348 GTAGTTTCAA
72272358 AAAAAAAGAATTCG
1 AAAAAAA-AATTCG
72272372 -AAAAAAAATTCG
1 AAAAAAAAATTCG
72272384 AAAAAAAA
1 AAAAAAAA
72272392 TTGTATACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.74, C:0.06, G:0.09, T:0.12
Consensus pattern (13 bp):
AAAAAAAAATTCG
Found at i:72272387 original size:11 final size:12
Alignment explanation
Indices: 72272359--72272393 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
72272349 TAGTTTCAAA
72272359 AAAAAAGAATTCG
1 AAAAAA-AATTCG
72272372 AAAAAAAATTCG
1 AAAAAAAATTCG
72272384 AAAAAAAATT
1 AAAAAAAATT
72272394 GTATACGGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.69, C:0.06, G:0.09, T:0.17
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:72278335 original size:12 final size:12
Alignment explanation
Indices: 72278313--72278346 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
72278303 GTAGTTTCAA
72278313 AAAAAATAATTCG
1 AAAAAA-AATTCG
*
72278326 AAAAAAAATTTG
1 AAAAAAAATTCG
72278338 AAAAAAAAT
1 AAAAAAAAT
72278347 GTATACGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.21
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:72290784 original size:31 final size:29
Alignment explanation
Indices: 72290726--72290784 Score: 73
Period size: 31 Copynumber: 2.0 Consensus size: 29
72290716 ATTTATCTAA
*
72290726 AAGATAAACATTAAATTTAATTTAATAAT
1 AAGATAAACATTAAATTTAAATTAATAAT
* *
72290755 AAGATAATCACTTTAATATTAAATTAATAA
1 AAGATAAACA-TTAAAT-TTAAATTAATAA
72290785 AATACCATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.36
30 5 0.20
31 11 0.44
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.37
Consensus pattern (29 bp):
AAGATAAACATTAAATTTAAATTAATAAT
Found at i:72294462 original size:21 final size:22
Alignment explanation
Indices: 72294432--72294474 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
72294422 TCTTGTTCAA
72294432 TCTCAATCTCGTTT-TTCTTTT
1 TCTCAATCTCGTTTATTCTTTT
* *
72294453 TCTCACTCTCTTTTATTCTTTT
1 TCTCAATCTCGTTTATTCTTTT
72294475 CTTGAGTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.09, C:0.26, G:0.02, T:0.63
Consensus pattern (22 bp):
TCTCAATCTCGTTTATTCTTTT
Found at i:72302759 original size:17 final size:17
Alignment explanation
Indices: 72302737--72302779 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
72302727 AGATCTCCGA
72302737 CGAGCTTCCAAATCGAT
1 CGAGCTTCCAAATCGAT
*
72302754 CGAGCTTCCAAATCGGT
1 CGAGCTTCCAAATCGAT
72302771 CGAGCTTCC
1 CGAGCTTCC
72302780 GATAATCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (17 bp):
CGAGCTTCCAAATCGAT
Found at i:72311323 original size:46 final size:48
Alignment explanation
Indices: 72311273--72311387 Score: 171
Period size: 48 Copynumber: 2.4 Consensus size: 48
72311263 TAATACTTAT
* *
72311273 ATTATTATTTAAAAGAGTTTTAGAT-AAATAATA-AAAATAGAATTTA
1 ATTATTATTTAAAAGAGTTTTAAATAAAATAATATAAAATAGAATTAA
* *
72311319 ATTATTATTTAAAAGAGTTTTAAATAAAATATTATTAAATAGAATTAA
1 ATTATTATTTAAAAGAGTTTTAAATAAAATAATATAAAATAGAATTAA
*
72311367 AATATTATTTAAAAGAGTTTT
1 ATTATTATTTAAAAGAGTTTT
72311388 TAAAATTCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
46 24 0.39
47 7 0.11
48 31 0.50
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (48 bp):
ATTATTATTTAAAAGAGTTTTAAATAAAATAATATAAAATAGAATTAA
Found at i:72323028 original size:50 final size:50
Alignment explanation
Indices: 72322953--72323052 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
72322943 GAACTGGAGT
72322953 TACAGAGGATGAGTGATCTTCAACAGGTTTGGTGGCTTTCTTCACTGATC
1 TACAGAGGATGAGTGATCTTCAACAGGTTTGGTGGCTTTCTTCACTGATC
*
72323003 TACAGAGGATGAGTGATCTTCAACAGGTTTGGTGGCTTTCTTCATTGATC
1 TACAGAGGATGAGTGATCTTCAACAGGTTTGGTGGCTTTCTTCACTGATC
72323053 CTCTCATTCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (50 bp):
TACAGAGGATGAGTGATCTTCAACAGGTTTGGTGGCTTTCTTCACTGATC
Found at i:72332095 original size:27 final size:27
Alignment explanation
Indices: 72332065--72332242 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72332055 ATATTGAGTC
* * * *
72332065 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
72332092 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72332119 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
72332147 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
72332174 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
72332201 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
72332228 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72332243 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:72332204 original size:82 final size:81
Alignment explanation
Indices: 72332086--72332241 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72332076 TGCTATATAA
* *
72332086 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
72332151 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72332168 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
72332232 CACTTAGTGC
65 CACTTAGTGC
72332242 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72340157 original size:27 final size:27
Alignment explanation
Indices: 72340127--72340304 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
72340117 ATATTGAGCC
* *
72340127 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
72340154 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
72340181 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
72340209 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
72340236 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
72340263 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
72340290 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72340305 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:72340239 original size:55 final size:54
Alignment explanation
Indices: 72340127--72340304 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
72340117 ATATTGAGCC
* * * * *
72340127 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
72340181 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
72340236 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
72340290 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72340305 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:72343554 original size:23 final size:22
Alignment explanation
Indices: 72343519--72343563 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
72343509 ATTCATGTTT
*
72343519 AAGACAAAATAAAATTGGACAAC
1 AAGACAAAAT-AAATTCGACAAC
* *
72343542 AAGACATATTAAATTCGACAAC
1 AAGACAAAATAAATTCGACAAC
72343564 CACACTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.56, C:0.16, G:0.11, T:0.18
Consensus pattern (22 bp):
AAGACAAAATAAATTCGACAAC
Found at i:72346662 original size:40 final size:40
Alignment explanation
Indices: 72346579--72346841 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
72346569 TTGAATGCTG
* * * * * *
72346579 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
72346619 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
72346659 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
72346699 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
72346739 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72346779 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72346818 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72346842 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:72346861 original size:79 final size:80
Alignment explanation
Indices: 72346618--72346876 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
72346608 AAGTGAATAT
* * * * * *
72346618 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
72346682 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
72346698 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
72346763 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
72346778 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
72346842 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
72346857 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
72346877 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:72350876 original size:30 final size:29
Alignment explanation
Indices: 72350816--72350876 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
72350806 GTAATTTGGG
* *
72350816 CTAAATTGTAAAAATAATAAATTGAGGGA
1 CTAAAATGTAAAAATAATAAATTCAGGGA
*
72350845 CTAAAATGT-AAAATAAATGAAATTCATGGA
1 CTAAAATGTAAAAAT-AAT-AAATTCAGGGA
72350875 CT
1 CT
72350877 TTTATGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 5 0.19
29 11 0.41
30 11 0.41
ACGTcount: A:0.51, C:0.07, G:0.15, T:0.28
Consensus pattern (29 bp):
CTAAAATGTAAAAATAATAAATTCAGGGA
Found at i:72351462 original size:41 final size:41
Alignment explanation
Indices: 72351399--72351541 Score: 187
Period size: 41 Copynumber: 3.5 Consensus size: 41
72351389 TCGGGTTCTG
* * *
72351399 TGCCTAGCAGGCTTTATACCGGTGAATTATATCAGGCTTTA
1 TGCCTAGCAGGCTTTATGCCGGTGTATCATATCAGGCTTTA
* * *
72351440 TACCTAGCAGGCTATATGCCGGTGTACCATATCAGGCTTTA
1 TGCCTAGCAGGCTTTATGCCGGTGTATCATATCAGGCTTTA
** * *
72351481 TGCCTAGCAGGCTTCGTGCCGGTGTATCATATCTGGCTTTG
1 TGCCTAGCAGGCTTTATGCCGGTGTATCATATCAGGCTTTA
*
72351522 TGCCTAGAAGGCTTTATGCC
1 TGCCTAGCAGGCTTTATGCC
72351542 TATGTGGTAT
Statistics
Matches: 86, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 86 1.00
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (41 bp):
TGCCTAGCAGGCTTTATGCCGGTGTATCATATCAGGCTTTA
Found at i:72361230 original size:20 final size:20
Alignment explanation
Indices: 72361205--72361243 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
72361195 TACTTTCTTC
72361205 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
72361225 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
72361244 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:72367151 original size:40 final size:40
Alignment explanation
Indices: 72367106--72367203 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 40
72367096 GCGTTTGGAT
*
72367106 AAAAAACACCGCTAAAAATCAAGCATCAGCGGCACTTTCC
1 AAAAAACGCCGCTAAAAATCAAGCATCAGCGGCACTTTCC
* * * * **
72367146 AAAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTT
1 AAAAAACGCCGCTAAAAATCAAGCATCAGCGGCACTTTCC
*
72367186 GAAAAACGCCGCTAAAAA
1 AAAAAACGCCGCTAAAAA
72367204 CGAGCATTAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.41, C:0.26, G:0.17, T:0.16
Consensus pattern (40 bp):
AAAAAACGCCGCTAAAAATCAAGCATCAGCGGCACTTTCC
Found at i:72367242 original size:39 final size:39
Alignment explanation
Indices: 72367147--72367244 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 39
72367137 GCACTTTCCA
* * *
72367147 AAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCGCTAAA-AACGAGCATTAACGACGCTTTTTG
72367187 AAAAACGCCGCTAAAAACGAGCATTAACGACG-TTTCTTAG
1 AAAAACGCCGCTAAAAACGAGCATTAACGACGCTTT-TT-G
* *
72367227 AAAAGCGCCGCAAAAAAC
1 AAAAACGCCGCTAAAAAC
72367245 CTAAGCCCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
38 3 0.06
39 16 0.31
40 32 0.63
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.17
Consensus pattern (39 bp):
AAAAACGCCGCTAAAAACGAGCATTAACGACGCTTTTTG
Found at i:72367337 original size:41 final size:39
Alignment explanation
Indices: 72367292--72367389 Score: 124
Period size: 39 Copynumber: 2.5 Consensus size: 39
72367282 TTTAGCCGCA
*
72367292 TTTTTGAAAAAGCGCCGCTAATGCTCAGAGCTTTAGCGACG
1 TTTTTGAAAAAGCGCCGCTAATGCTC-G-GCATTAGCGACG
* * * *
72367333 TTTTTGGAAAAGCGTCGCTAATGCTCGGGATTAGCGGCG
1 TTTTTGAAAAAGCGCCGCTAATGCTCGGCATTAGCGACG
*
72367372 TTTTTAAAAAAGCGCCGC
1 TTTTTGAAAAAGCGCCGC
72367390 AAAAACATTT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 24 0.49
40 1 0.02
41 24 0.49
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
TTTTTGAAAAAGCGCCGCTAATGCTCGGCATTAGCGACG
Found at i:72367383 original size:39 final size:41
Alignment explanation
Indices: 72367283--72367389 Score: 128
Period size: 41 Copynumber: 2.7 Consensus size: 41
72367273 TTTCGGGGCT
* * *
72367283 TTAGCCGCATTTTTGAAAAAGCGCCGCTAATGCTCAGAGCT
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAGCA
* * * *
72367324 TTAGCGACGTTTTTGGAAAAGCGTCGCTAATGCTC-G-GGA
1 TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAGCA
*
72367363 TTAGCGGCGTTTTTAAAAAAGCGCCGC
1 TTAGCGGCGTTTTTGAAAAAGCGCCGC
72367390 AAAAACATTT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 24 0.44
40 1 0.02
41 30 0.55
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
TTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAGCA
Found at i:72367827 original size:14 final size:15
Alignment explanation
Indices: 72367794--72367827 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
72367784 TAAGGTTTAT
72367794 AGATTATGGAATTAG
1 AGATTATGGAATTAG
72367809 AGATTATGG-ATTAG
1 AGATTATGGAATTAG
*
72367823 GGATT
1 AGATT
72367828 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (15 bp):
AGATTATGGAATTAG
Found at i:72368038 original size:21 final size:21
Alignment explanation
Indices: 72367992--72368066 Score: 53
Period size: 21 Copynumber: 3.5 Consensus size: 21
72367982 TAGGGGTTGG
* *
72367992 GGTTTGGGGGTTAGTAATTAAG-
1 GGTTT-GGGGTTAGGAGTT-AGT
*
72368014 GGTTTGGGGTTAGGGGTTAGT
1 GGTTTGGGGTTAGGAGTTAGT
* * *
72368035 GGTTAGAGGTTAAGAGTTAGT
1 GGTTTGGGGTTAGGAGTTAGT
* *
72368056 GATTTAGGGTT
1 GGTTTGGGGTT
72368067 TAGAAATTCG
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
20 2 0.05
21 34 0.83
22 5 0.12
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (21 bp):
GGTTTGGGGTTAGGAGTTAGT
Found at i:72368045 original size:28 final size:29
Alignment explanation
Indices: 72367979--72368045 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 29
72367969 AATGTATAGG
* *
72367979 AGTTAG-GGGTTGGGGTTTGGGGGTTAGT
1 AGTTAGAGGTTTGGGGTTTAGGGGTTAGT
*
72368007 AATTA-AGGGTTTGGGG-TTAGGGGTTAGT
1 AGTTAGA-GGTTTGGGGTTTAGGGGTTAGT
*
72368035 GGTTAGAGGTT
1 AGTTAGAGGTT
72368046 AAGAGTTAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
28 22 0.71
29 9 0.29
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (29 bp):
AGTTAGAGGTTTGGGGTTTAGGGGTTAGT
Found at i:72368202 original size:7 final size:7
Alignment explanation
Indices: 72368163--72368198 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
72368153 TAAAAGAGGA
72368163 GTTAGGG
1 GTTAGGG
*
72368170 GTTAGAG
1 GTTAGGG
72368177 GTTAGGG
1 GTTAGGG
72368184 GTTAGGG
1 GTTAGGG
72368191 GTTTAGGG
1 G-TTAGGG
72368199 TTTATGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.17, C:0.00, G:0.53, T:0.31
Consensus pattern (7 bp):
GTTAGGG
Found at i:72368925 original size:148 final size:147
Alignment explanation
Indices: 72368756--72369021 Score: 453
Period size: 148 Copynumber: 1.8 Consensus size: 147
72368746 GCGGCGTTTT
* *
72368756 GGTAAGCAATAGCGGCGTTTTATAAAAAAAATGCCACAAAAAATAATTTTACTTT-AAAAAAATA
1 GGTAAGCAATAGCGACGTTTTATAAAAAAAATACCACAAAAAATAATTTT-CTTTAAAAAAAATA
*
72368820 GCGCCATTTTATATAGCAAAACAGTGTCGTTTTAATCCAAATGAAATAATTTTTGCGGCGTTTTT
65 GCGCCATTTTATATAACAAAACAGTGTCGTTTTAATCCAAATGAAATAATTTTTGCGGCGTTTTT
72368885 ATGAAATACGCTGCAAAA
130 ATGAAATACGCTGCAAAA
* *
72368903 GGTAAGCAATAGCGACATTTTTATAAAAAAAATACCACAAAAAATAATTTTTTTTAAAAAAAATA
1 GGTAAGCAATAGCGAC-GTTTTATAAAAAAAATACCACAAAAAATAATTTTCTTTAAAAAAAATA
*
72368968 GCGCCATTTTATATAACAAAACAGTGTCGTTTTATTCCAAATGAAATAATTTTT
65 GCGCCATTTTATATAACAAAACAGTGTCGTTTTAATCCAAATGAAATAATTTTT
72369022 TGTGGGCATT
Statistics
Matches: 111, Mismatches: 6, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
147 18 0.16
148 93 0.84
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (147 bp):
GGTAAGCAATAGCGACGTTTTATAAAAAAAATACCACAAAAAATAATTTTCTTTAAAAAAAATAG
CGCCATTTTATATAACAAAACAGTGTCGTTTTAATCCAAATGAAATAATTTTTGCGGCGTTTTTA
TGAAATACGCTGCAAAA
Found at i:72369812 original size:6 final size:6
Alignment explanation
Indices: 72369801--72369852 Score: 104
Period size: 6 Copynumber: 8.7 Consensus size: 6
72369791 TGTGGTTTGA
72369801 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
72369849 TTTT
1 TTTT
72369853 TTGAGGGGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:72370569 original size:95 final size:96
Alignment explanation
Indices: 72370406--72370591 Score: 365
Period size: 95 Copynumber: 1.9 Consensus size: 96
72370396 CATGGCGGAC
72370406 TGATGAAGTTAGTGGTAATTGGTGGTGGTAAGTTACTTTGTTGTGATTCTCTAGATTTGTGGCCA
1 TGATGAAGTTAGTGGTAATTGGTGGTGGTAAGTTACTTTGTTGTGATTCTCTAGATTTGTGGCCA
72370471 TTG-TTTACTCTCTCTTTCTAGTCTCAAAAT
66 TTGTTTTACTCTCTCTTTCTAGTCTCAAAAT
72370501 TGATGAAGTTAGTGGTAATTGGTGGTGGTAAGTTACTTTGTTGTGATTCTCTAGATTTGTGGCCA
1 TGATGAAGTTAGTGGTAATTGGTGGTGGTAAGTTACTTTGTTGTGATTCTCTAGATTTGTGGCCA
72370566 TTGTTTTACTCTCTCTTTCTAGTCTC
66 TTGTTTTACTCTCTCTTTCTAGTCTC
72370592 TGAGGGCAAC
Statistics
Matches: 90, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
95 68 0.76
96 22 0.24
ACGTcount: A:0.18, C:0.13, G:0.24, T:0.45
Consensus pattern (96 bp):
TGATGAAGTTAGTGGTAATTGGTGGTGGTAAGTTACTTTGTTGTGATTCTCTAGATTTGTGGCCA
TTGTTTTACTCTCTCTTTCTAGTCTCAAAAT
Found at i:72371346 original size:18 final size:18
Alignment explanation
Indices: 72371323--72371358 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
72371313 TATTTTTCAT
*
72371323 TTGCTTCAATTTCTATGC
1 TTGCTTCAATTTCCATGC
72371341 TTGCTTCAATTTCCATGC
1 TTGCTTCAATTTCCATGC
72371359 CTTACAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.25, G:0.11, T:0.47
Consensus pattern (18 bp):
TTGCTTCAATTTCCATGC
Found at i:72372332 original size:43 final size:43
Alignment explanation
Indices: 72372199--72372332 Score: 166
Period size: 43 Copynumber: 3.1 Consensus size: 43
72372189 AAAGTCATGT
* *
72372199 TTTTAGCGGCGTTTGT-GAAAAAGCGTCGCTAAAGGTCAT-TC
1 TTTTAGTGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGAC
* * * *
72372240 TTTATAGTGGCGTTTGTGGTAGAAGCGCCGCAAAAGGTCATGA-
1 TTT-TAGTGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGAC
*
72372283 TCTTTAGTGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGAC
1 T-TTTAGTGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGAC
72372327 TTTTAG
1 TTTTAG
72372333 CGGCATTTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
41 3 0.04
42 12 0.15
43 60 0.77
44 3 0.04
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (43 bp):
TTTTAGTGGCGTTTGTGGAAAAAGCGTCGCTAAAGGTCATGAC
Found at i:72372366 original size:85 final size:84
Alignment explanation
Indices: 72372187--72372382 Score: 220
Period size: 85 Copynumber: 2.3 Consensus size: 84
72372177 TAATTTTTTT
* * * *
72372187 TAAAAGTCATGTTTTTAGCGGCGTTTGTGAAAAAGCGTCGCTAAAGGTCATTCTTTATAGTGGCG
1 TAAAAGTCATGTCTTTAGCGGCGTTTGTGAAAAAGCGTCGCTAAAGGTCATACTTTATAGCGGCA
*
72372252 TTTGTGGTAGAAGCGCCGC
66 TTTGTGATAGAAGCGCCGC
* *
72372271 -AAAAGGTCATGATCTTTAGTGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGACTTT-TAGC
1 TAAAA-GTCATG-TCTTTAGCGGCGTTTGT-GAAAAAGCGTCGCTAAAGGTCAT-ACTTTATAGC
* *
72372334 GGCATTT-TTATA-ATAGCGCTGC
62 GGCATTTGTGATAGA-AGCGCCGC
*
72372356 TAAAAGTCATGGCCTTTAGCGGCGTTT
1 TAAAAGTCAT-GTCTTTAGCGGCGTTT
72372383 ATTTCTAAAA
Statistics
Matches: 94, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
83 4 0.04
84 7 0.07
85 43 0.46
86 36 0.38
87 4 0.04
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (84 bp):
TAAAAGTCATGTCTTTAGCGGCGTTTGTGAAAAAGCGTCGCTAAAGGTCATACTTTATAGCGGCA
TTTGTGATAGAAGCGCCGC
Found at i:72373573 original size:90 final size:90
Alignment explanation
Indices: 72373420--72373600 Score: 317
Period size: 90 Copynumber: 2.0 Consensus size: 90
72373410 AAAACCACAA
* * * *
72373420 ACATATTGGTTAAAATTATTAACATAATTGCATGCTTTACTGTGCATTTGAGCTTGAATTCCATC
1 ACATATTGGTCAAAATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATA
72373485 TATTAACTCCCATTATACCTATTAT
66 TATTAACTCCCATTATACCTATTAT
72373510 ACATATTGGTCAAAATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATA
1 ACATATTGGTCAAAATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATA
*
72373575 TATTAACTCCCATTATACCTGTTAT
66 TATTAACTCCCATTATACCTATTAT
72373600 A
1 A
72373601 GCTTAAATTT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
90 86 1.00
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.40
Consensus pattern (90 bp):
ACATATTGGTCAAAATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATA
TATTAACTCCCATTATACCTATTAT
Found at i:72373852 original size:16 final size:16
Alignment explanation
Indices: 72373828--72373895 Score: 84
Period size: 16 Copynumber: 4.2 Consensus size: 16
72373818 TGGTTCACTA
*
72373828 TAATGAAATAGAGCTG
1 TAATTAAATAGAGCTG
*
72373844 TAATTAAATAGAGTTG
1 TAATTAAATAGAGCTG
* *
72373860 TAATTGAATAGAGTTG
1 TAATTAAATAGAGCTG
72373876 TAATGT-AATAGAGCTG
1 TAAT-TAAATAGAGCTG
72373892 TAAT
1 TAAT
72373896 CAGTAATCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
16 46 0.98
17 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.34
Consensus pattern (16 bp):
TAATTAAATAGAGCTG
Found at i:72374151 original size:58 final size:58
Alignment explanation
Indices: 72374072--72374195 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 58
72374062 TTTTAATAAG
* *
72374072 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAATAATTTAACAAAATTCTTAACATA
* * * *
72374130 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
72374188 ATTATTAT
1 ATTATTAT
72374196 ATGAATTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 22 0.37
58 37 0.63
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
Found at i:72379660 original size:3 final size:3
Alignment explanation
Indices: 72379652--72379679 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
72379642 TAATATTACC
72379652 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
72379680 GCTTTTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:72392493 original size:88 final size:86
Alignment explanation
Indices: 72392357--72392601 Score: 264
Period size: 85 Copynumber: 2.8 Consensus size: 86
72392347 TGAAGCCGAT
* * *
72392357 AATCCTATCTCCCTGAAATTGTAATGGAGCGGATTA-AAGTA-ATGGATCTCATCTCCCTGAAGT
1 AATCCTATCTCCCTGAAGTTGCAATGGAGCGGATTACAACTACA--GATCTCATCTCCCTGAAGT
* *
72392420 TGCAGTGGAGCAGACAGA-AGAAACC
64 TGTAGT-GA-AAG-CAGATAGAAACC
* * *
72392445 AATCCTATCTCCCTGAAGTTGCAATGGAGCGGATTACAACTACAGATCTTATCTCTCTAAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAATGGAGCGGATTACAACTACAGATCTCATCTCCCTGAAGTTG
* * *
72392510 TAGT-AAAGCAGATCGCATCC
66 TAGTGAAAGCAGATAGAAACC
* * ** * *
72392530 AGTCTTATCTCCCTGAAGTTGCTGTGGAGCGGATTACAACCACAGACCTCATCTCCCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAATGGAGCGGATTACAACTACAGATCTCATCTCCCTGAAGTTG
72392595 TAGTGAA
66 TAGTGAA
72392602 GCGGATCGAA
Statistics
Matches: 133, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
84 4 0.03
85 66 0.50
86 3 0.02
88 55 0.41
89 4 0.03
90 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (86 bp):
AATCCTATCTCCCTGAAGTTGCAATGGAGCGGATTACAACTACAGATCTCATCTCCCTGAAGTTG
TAGTGAAAGCAGATAGAAACC
Found at i:72392498 original size:44 final size:44
Alignment explanation
Indices: 72392362--72392607 Score: 164
Period size: 44 Copynumber: 5.7 Consensus size: 44
72392352 CCGATAATCC
* * * *
72392362 TATCTCCCTGAAATTGTAATGGAGCGGATTA-AAGTA-ATGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTACAACTACA--GATCT
* * * * ** *
72392406 CATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGAAACCA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTACAA-CTA-CAGATCT
*
72392450 TATCTCCCTGAAGTTGCAATGGAGCGGATTACAACTACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTACAACTACAGATCT
* * * ** * ** *
72392494 TATCTCTCTAAAGTTGTAGTAAAGCAGATCGC-A-TCCAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTACAACTACAGATCT
* * *
72392535 TATCTCCCTGAAGTTGCTGTGGAGCGGATTACAACCACAGACCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTACAACTACAGATCT
* * *
72392579 CATCTCCCTGAAGTTGTAGTGAAGCGGAT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGAT
72392608 CGAAACACCG
Statistics
Matches: 150, Mismatches: 43, Indels: 18
0.71 0.20 0.09
Matches are distributed among these distances:
41 26 0.17
42 5 0.03
43 7 0.05
44 107 0.71
45 4 0.03
47 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTACAACTACAGATCT
Found at i:72393928 original size:3 final size:3
Alignment explanation
Indices: 72393920--72393993 Score: 121
Period size: 3 Copynumber: 24.3 Consensus size: 3
72393910 TAATATTTCC
*
72393920 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATA ATT ATT ATT ATTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
*
72393966 ATT ATT ATT ATT ATC ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
72393994 GCTTTTTTAT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
3 63 0.95
4 3 0.05
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:72401679 original size:24 final size:25
Alignment explanation
Indices: 72401652--72401705 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
72401642 ACATGTTTAT
*
72401652 TTTTTAAAAT-TTTTAAATAATATA
1 TTTTTAAAATATTTTAAAAAATATA
*
72401676 TTTTT-ATATATTTTAAAAAATATA
1 TTTTTAAAATATTTTAAAAAATATA
*
72401700 TATTTA
1 TTTTTA
72401706 CTAATTAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 3 0.12
24 22 0.88
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTTTAAAATATTTTAAAAAATATA
Found at i:72403904 original size:18 final size:18
Alignment explanation
Indices: 72403881--72403923 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
72403871 TATCTTTTTA
*
72403881 GGATTTTAAATCCTTCAG
1 GGATTTTAAATCATTCAG
72403899 GGATTTTAAATCATTCAG
1 GGATTTTAAATCATTCAG
72403917 GGATTTT
1 GGATTTT
72403924 CATATAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.42
Consensus pattern (18 bp):
GGATTTTAAATCATTCAG
Found at i:72407609 original size:18 final size:18
Alignment explanation
Indices: 72407582--72407633 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
72407572 AAAGGAAATA
*
72407582 AAAAAGAAAGAAATAAAG
1 AAAAAGAAAGAAAAAAAG
* *
72407600 AAAAATAAAGAAAAAAAT
1 AAAAAGAAAGAAAAAAAG
*
72407618 AAAAA-AGAGAAAAAAA
1 AAAAAGAAAGAAAAAAA
72407634 ATCTAGTGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 10 0.33
18 20 0.67
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.06
Consensus pattern (18 bp):
AAAAAGAAAGAAAAAAAG
Found at i:72407634 original size:18 final size:18
Alignment explanation
Indices: 72407577--72407635 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
72407567 AAAGAAAAGG
72407577 AAATAAAAAAGA-AAGAAA
1 AAATAAAAAAGAGAA-AAA
* *
72407595 TAAAGAAAAATAAAG-AAAA
1 -AAATAAAAA-AGAGAAAAA
72407614 AAATAAAAAAGAGAAAAA
1 AAATAAAAAAGAGAAAAA
72407632 AAAT
1 AAAT
72407636 CTAGTGATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
17 3 0.09
18 16 0.48
19 11 0.33
20 3 0.09
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.08
Consensus pattern (18 bp):
AAATAAAAAAGAGAAAAA
Found at i:72412156 original size:28 final size:27
Alignment explanation
Indices: 72411964--72412388 Score: 724
Period size: 27 Copynumber: 15.6 Consensus size: 27
72411954 TAAATTGTGC
*
72411964 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72411991 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72412018 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72412045 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72412072 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72412099 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72412126 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
72412154 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
72412181 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72412208 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
72412236 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
72412264 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
72412292 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* * *
72412320 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
72412347 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
72412374 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72412389 GACTTAATAT
Statistics
Matches: 386, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
27 250 0.65
28 136 0.35
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:72420760 original size:27 final size:27
Alignment explanation
Indices: 72420727--72420933 Score: 315
Period size: 27 Copynumber: 7.6 Consensus size: 27
72420717 TAAATTGTGC
*
72420727 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
72420754 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
72420782 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
72420809 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
72420837 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72420864 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
72420892 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72420919 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72420934 GACTTAATAT
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.54
28 77 0.46
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72420791 original size:55 final size:55
Alignment explanation
Indices: 72420727--72420933 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
72420717 TAAATTGTGC
72420727 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
72420782 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
72420837 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
72420892 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
72420934 GACTTAATAT
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:72426384 original size:6 final size:6
Alignment explanation
Indices: 72426321--72426390 Score: 63
Period size: 6 Copynumber: 11.5 Consensus size: 6
72426311 GTTTTATTTG
* * *
72426321 TTTTAT TTTTAAT TTTCT-T TTTTAT GTTTAT GTTTAT TTCTAT TTTTAGT
1 TTTTAT TTTT-AT TTT-TAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T
*
72426371 TGTT-T TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTT
72426391 ATTGTAATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
5 5 0.09
6 38 0.72
7 9 0.17
8 1 0.02
ACGTcount: A:0.14, C:0.03, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:72426910 original size:187 final size:187
Alignment explanation
Indices: 72426590--72426957 Score: 592
Period size: 187 Copynumber: 2.0 Consensus size: 187
72426580 GGTAGTTTCA
* * *
72426590 GTTTCCTCCCTCTCGTATGATATTATGTTTATACTGTGATTATATTTGTTTGCACATTGAGGACA
1 GTTTCCTCCCTCTCATATGATATTATGTTTATACTATGATTATATTTGTTTGCACATTAAGGACA
* * **
72426655 ATGTAGATCTTAAGTGTGGGGAGGTTATTTATATATTTACTAGAAAATCTTTGAACTATGTCTTG
66 ATGTACATCTTAAGTGTGGGGAGGTTATTTATATAATTACTAGAAAATCCCTGAACTATGTCTTG
*
72426720 TATTTAAGTAATTTTCTCATACTTCAATTAGAATTAATTTTTGACGATTTGAAATGT
131 TATTTAAGTAATTTTCTCATACTTCAATTAGAATGAATTTTTGACGATTTGAAATGT
* * * *
72426777 GTTTTCTCCCTCTCATATGATATTCTGTTTATATTATGATTATATTTGTTTGTACATTAAGGACA
1 GTTTCCTCCCTCTCATATGATATTATGTTTATACTATGATTATATTTGTTTGCACATTAAGGACA
* *
72426842 ATGTACATCTTAAGTGTGGGGAGGTTATTTATATAATTATTAGAAAATCCCTGAATTATGTCTTG
66 ATGTACATCTTAAGTGTGGGGAGGTTATTTATATAATTACTAGAAAATCCCTGAACTATGTCTTG
* *
72426907 TATTTAATTAATTTTCTCATACTTCTATTAGAATGAATTTTTGACGATTTG
131 TATTTAAGTAATTTTCTCATACTTCAATTAGAATGAATTTTTGACGATTTG
72426958 GAATTTTTGT
Statistics
Matches: 165, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
187 165 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.45
Consensus pattern (187 bp):
GTTTCCTCCCTCTCATATGATATTATGTTTATACTATGATTATATTTGTTTGCACATTAAGGACA
ATGTACATCTTAAGTGTGGGGAGGTTATTTATATAATTACTAGAAAATCCCTGAACTATGTCTTG
TATTTAAGTAATTTTCTCATACTTCAATTAGAATGAATTTTTGACGATTTGAAATGT
Found at i:72436574 original size:21 final size:22
Alignment explanation
Indices: 72436539--72436600 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
72436529 AATATAAAAA
*
72436539 AATATAT-AATAAAATAG-ATGT
1 AATATATAAAT-AAATAGAATAT
*
72436560 AATATATAAATAAATTGAATAT
1 AATATATAAATAAATAGAATAT
*
72436582 AATAT-TAAATATATA-AATA
1 AATATATAAATAAATAGAATA
72436601 AATTAAACCA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 4 0.11
21 20 0.57
22 11 0.31
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (22 bp):
AATATATAAATAAATAGAATAT
Found at i:72436605 original size:17 final size:17
Alignment explanation
Indices: 72436560--72436607 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 17
72436550 AAATAGATGT
72436560 AATATATAAATAAATT-
1 AATATATAAATAAATTA
*
72436576 GA-ATAT-AAT--ATTA
1 AATATATAAATAAATTA
72436589 AATATATAAATAAATTA
1 AATATATAAATAAATTA
72436606 AA
1 AA
72436608 CCAAAAGAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 9
0.69 0.06 0.25
Matches are distributed among these distances:
12 3 0.12
13 1 0.04
14 7 0.28
15 7 0.28
16 1 0.04
17 6 0.24
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AATATATAAATAAATTA
Found at i:72438506 original size:25 final size:25
Alignment explanation
Indices: 72438451--72438543 Score: 96
Period size: 25 Copynumber: 3.7 Consensus size: 25
72438441 TACAGATTTT
* * *
72438451 AGCTCCTATGAGCTTACCGATACTC
1 AGCTCGTATGAGCTTACCGTTATTC
*
72438476 AGCTCGTATAAGCTTACCGTTATTC
1 AGCTCGTATGAGCTTACCGTTATTC
* * *
72438501 AGCTCGGAGGAGCTTACCATTATTC
1 AGCTCGTATGAGCTTACCGTTATTC
* * *
72438526 AACTCGGAGGAGCTTACC
1 AGCTCGTATGAGCTTACC
72438544 ATTTACTGCT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACCGTTATTC
Found at i:72438544 original size:25 final size:25
Alignment explanation
Indices: 72438486--72438546 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
72438476 AGCTCGTATA
* *
72438486 AGCTTACCGTTATTCAGCTCGGAGG
1 AGCTTACCATTATTCAACTCGGAGG
72438511 AGCTTACCATTATTCAACTCGGAGG
1 AGCTTACCATTATTCAACTCGGAGG
72438536 AGCTTACCATT
1 AGCTTACCATT
72438547 TACTGCTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (25 bp):
AGCTTACCATTATTCAACTCGGAGG
Found at i:72441206 original size:9 final size:9
Alignment explanation
Indices: 72441138--72441207 Score: 52
Period size: 9 Copynumber: 7.2 Consensus size: 9
72441128 AATTTTCTTC
72441138 TTTTCTTTCT
1 TTTTCTTT-T
72441148 TTTTCGTTTT
1 TTTTC-TTTT
**
72441158 TTTTCAGTT
1 TTTTCTTTT
72441167 TTTTCAGTTTT
1 TTTTC--TTTT
*
72441178 TTTTATTTT
1 TTTTCTTTT
72441187 TATTT-TATTT
1 T-TTTCT-TTT
72441197 TTTTCTTTT
1 TTTTCTTTT
72441206 TT
1 TT
72441208 CATTTGTTCT
Statistics
Matches: 49, Mismatches: 5, Indels: 13
0.73 0.07 0.19
Matches are distributed among these distances:
9 21 0.43
10 19 0.39
11 9 0.18
ACGTcount: A:0.07, C:0.09, G:0.04, T:0.80
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:72441206 original size:20 final size:21
Alignment explanation
Indices: 72441174--72441212 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
72441164 GTTTTTTCAG
72441174 TTTTTTTTATTTTT-ATTTTA
1 TTTTTTTTATTTTTCATTTTA
72441194 TTTTTTTCT-TTTTTCATTT
1 TTTTTTT-TATTTTTCATTT
72441213 GTTCTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTTTATTTTTCATTTTA
Found at i:72444047 original size:17 final size:18
Alignment explanation
Indices: 72444018--72444052 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
72444008 ATACTCAAAT
*
72444018 TTTTTTTATTTCATATAC
1 TTTTTTTATTTCAAATAC
72444036 TTTTTTTA-TTCAAATAC
1 TTTTTTTATTTCAAATAC
72444053 AATTGAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTTTATTTCAAATAC
Found at i:72445890 original size:32 final size:32
Alignment explanation
Indices: 72445822--72445978 Score: 208
Period size: 32 Copynumber: 4.9 Consensus size: 32
72445812 ACAAAATAAT
* * *
72445822 GGTAACATGATTGGCAC-AAGCCATCAATAAC
1 GGTAATATGATCGGCACAAAGCCATCAGTAAC
*
72445853 GGTAATATGATCGACACAAAGCCATCAGTAAC
1 GGTAATATGATCGGCACAAAGCCATCAGTAAC
* *
72445885 TGTAATATGATCGGTACAAAGCCATCAGTAAC
1 GGTAATATGATCGGCACAAAGCCATCAGTAAC
* * *
72445917 GGTAATACGATTGGCACAAAGCCATCAGTAAT
1 GGTAATATGATCGGCACAAAGCCATCAGTAAC
* *
72445949 AGTAATATGATCGGTACAAAGCCATCAGTA
1 GGTAATATGATCGGCACAAAGCCATCAGTA
72445979 GCATCGCAGC
Statistics
Matches: 109, Mismatches: 16, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
31 14 0.13
32 95 0.87
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (32 bp):
GGTAATATGATCGGCACAAAGCCATCAGTAAC
Found at i:72446190 original size:24 final size:24
Alignment explanation
Indices: 72446154--72446207 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
72446144 GCTCAGAATT
72446154 AGTCATACAAATCACAAACAAATC
1 AGTCATACAAATCACAAACAAATC
* * *
72446178 AGTCATACCAATCATAGACAAATC
1 AGTCATACAAATCACAAACAAATC
72446202 AGTCAT
1 AGTCAT
72446208 TTACATGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.48, C:0.24, G:0.07, T:0.20
Consensus pattern (24 bp):
AGTCATACAAATCACAAACAAATC
Found at i:72446506 original size:81 final size:81
Alignment explanation
Indices: 72446253--72446509 Score: 232
Period size: 81 Copynumber: 3.2 Consensus size: 81
72446243 GGACAAAATA
* * * * * *
72446253 GTCA-TTTACCCTACAGGGGCATTACGGTCATTTTACCTTACAGGGGCATTACGATCATTTTACC
1 GTCATTTTACCCTATAGGGGCATCACAGTCATTTTACCTTATAGGGGTATTTCGATCATTTTACC
* * * *
72446317 TTACAGGGGCATTATG
66 ATATAGGGGTATTTTG
* * * ** *
72446333 ATTATTTTACCCTATAGGGGTATCACAGTCATTTTACCCTT-TAAAGGTATTTCGACCATTTTAC
1 GTCATTTTACCCTATAGGGGCATCACAGTCATTTTA-CCTTATAGGGGTATTTCGATCATTTTAC
**
72446397 CAT-TCAGGGGTATTTCA
65 CATAT-AGGGGTATTTTG
* * * *** *
72446414 GTCTTTTTACCCTTTGGGGGCATTTTAGTCATTTTACCTTATAGGGGTATTTCGGTCATTTTACC
1 GTCATTTTACCCTATAGGGGCATCACAGTCATTTTACCTTATAGGGGTATTTCGATCATTTTACC
*
72446479 CTATAGGGGTATTTTG
66 ATATAGGGGTATTTTG
*
72446495 GTCATTCTACCCTAT
1 GTCATTTTACCCTAT
72446510 CAAGGTATTT
Statistics
Matches: 135, Mismatches: 37, Indels: 9
0.75 0.20 0.05
Matches are distributed among these distances:
80 6 0.04
81 124 0.92
82 5 0.04
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (81 bp):
GTCATTTTACCCTATAGGGGCATCACAGTCATTTTACCTTATAGGGGTATTTCGATCATTTTACC
ATATAGGGGTATTTTG
Found at i:72446509 original size:27 final size:27
Alignment explanation
Indices: 72446252--72446509 Score: 175
Period size: 27 Copynumber: 9.6 Consensus size: 27
72446242 GGGACAAAAT
* * *
72446252 AGTCA-TTTACCCTACAGGGGCATTAC
1 AGTCATTTTACCCTATAGGGGTATTTC
* * * * *
72446278 GGTCATTTTACCTTACAGGGGCATTAC
1 AGTCATTTTACCCTATAGGGGTATTTC
* * * *
72446305 -GATCATTTTACCTTACAGGGGCATTATG
1 AG-TCATTTTACCCTATAGGGGTATT-TC
* **
72446333 A-TTATTTTACCCTATAGGGGTATCAC
1 AGTCATTTTACCCTATAGGGGTATTTC
* **
72446359 AGTCATTTTACCCTTTAAAGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTC
* *
72446386 -GACCATTTTACCAT-TCAGGGGTATTTC
1 AG-TCATTTTACCCTAT-AGGGGTATTTC
* * * * *
72446413 AGTCTTTTTACCCTTTGGGGGCATTTT
1 AGTCATTTTACCCTATAGGGGTATTTC
*
72446440 AGTCATTTTACCTTATAGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGTATTTC
* *
72446467 GGTCATTTTACCCTATAGGGGTATTTT
1 AGTCATTTTACCCTATAGGGGTATTTC
* *
72446494 GGTCATTCTACCCTAT
1 AGTCATTTTACCCTAT
72446510 CAAGGTATTT
Statistics
Matches: 186, Mismatches: 37, Indels: 17
0.77 0.15 0.07
Matches are distributed among these distances:
26 8 0.04
27 176 0.95
28 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGGTATTTC
Found at i:72446516 original size:27 final size:27
Alignment explanation
Indices: 72446441--72446524 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
72446431 GGGCATTTTA
* * *
72446441 GTCATTTTACCTTATAGGGGTATTTCG
1 GTCATTCTACCCTATAGAGGTATTTCG
* * *
72446468 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTCTACCCTATAGAGGTATTTCG
72446495 GTCATTCTACCCTATCA-AGGTATTTCG
1 GTCATTCTACCCTAT-AGAGGTATTTCG
72446522 GTC
1 GTC
72446525 CAGATATCGA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (27 bp):
GTCATTCTACCCTATAGAGGTATTTCG
Found at i:72446517 original size:54 final size:54
Alignment explanation
Indices: 72446405--72446524 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
72446395 ACCATTCAGG
* * * * * * *
72446405 GGTATTTCAGTCTTTTTACCCTTTGGGGGCATTTTAGTCATTTTACCTTATAGG
1 GGTATTTCGGTCATTTTACCCTATAGGGGCATTTTAGTCATTCTACCCTATAGA
* *
72446459 GGTATTTCGGTCATTTTACCCTATAGGGGTATTTTGGTCATTCTACCCTATCA-A
1 GGTATTTCGGTCATTTTACCCTATAGGGGCATTTTAGTCATTCTACCCTAT-AGA
72446513 GGTATTTCGGTC
1 GGTATTTCGGTC
72446525 CAGATATCGA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 55 0.98
55 1 0.02
ACGTcount: A:0.17, C:0.18, G:0.21, T:0.43
Consensus pattern (54 bp):
GGTATTTCGGTCATTTTACCCTATAGGGGCATTTTAGTCATTCTACCCTATAGA
Found at i:72450289 original size:27 final size:27
Alignment explanation
Indices: 72450230--72450301 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
72450220 TCCAAACTAA
72450230 TATAAAATGACTGTTATGCCTCCACGT
1 TATAAAATGACTGTTATGCCTCCACGT
** * *
72450257 GGTAAAATGGCTGTTATGCC-CCTATGT
1 TATAAAATGACTGTTATGCCTCC-ACGT
72450284 TATAAAATGACTG-TATGC
1 TATAAAATGACTGTTATGC
72450302 TTTATGTTAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
26 7 0.19
27 30 0.81
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (27 bp):
TATAAAATGACTGTTATGCCTCCACGT
Found at i:72456345 original size:12 final size:12
Alignment explanation
Indices: 72456325--72456358 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
72456315 GTAATAAGGT
72456325 GGAGAGATTTTA
1 GGAGAGATTTTA
*
72456337 GGAGGGATTTTA
1 GGAGAGATTTTA
72456349 GGAGTAGATT
1 GGAG-AGATT
72456359 ATGGGATTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.29, C:0.00, G:0.38, T:0.32
Consensus pattern (12 bp):
GGAGAGATTTTA
Found at i:72456886 original size:27 final size:27
Alignment explanation
Indices: 72456827--72456888 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
72456817 CCCAAACTGA
* *
72456827 TATAAAGTGATTATTATGCCCCCACGT
1 TATAAAATGACTATTATGCCCCCACGT
** * *
72456854 GGTAAAATGACTATTATGCCCCTATGT
1 TATAAAATGACTATTATGCCCCCACGT
72456881 TATAAAAT
1 TATAAAAT
72456889 AATTGTATGC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Consensus pattern (27 bp):
TATAAAATGACTATTATGCCCCCACGT
Done.