Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 236 of 313
Found at i:72857661 original size:54 final size:54
Alignment explanation
Indices: 72857457--72857679 Score: 161
Period size: 54 Copynumber: 4.1 Consensus size: 54
72857447 ATGACTGAAT
* * ** * *
72857457 TACCCCCAGAGGGTAAAATGATCG-AATTAC-CCTCGAAGGTTAAAATGACTGAAA
1 TACCCCTAAAGGGTAAAATGAT-GAAATTACACCTATAAGG-TAAAATGACCGTAA
* * ** * * * *
72857511 TA-CCCTACAATGGTAAATTGACCAAATTACCCCCGA-AGGGTAAAATGACCGAAA
1 TACCCCTA-AAGGGTAAAATGATGAAATTA-CACCTATAAGGTAAAATGACCGTAA
* * *
72857565 TACCCCTAAAGGGTAAAATGATGAAATTGCCCCTATAGGGTAAAATGACCGTAA
1 TACCCCTAAAGGGTAAAATGATGAAATTACACCTATAAGGTAAAATGACCGTAA
* * *
72857619 TAACCCC-ATAGGGTAAAATGAATGAAA-TACACGTGTAAGGTAAAATGACCGTAA
1 T-ACCCCTAAAGGGTAAAATG-ATGAAATTACACCTATAAGGTAAAATGACCGTAA
*
72857673 TGCCCCT
1 TACCCCT
72857680 CGTGGGTAAA
Statistics
Matches: 136, Mismatches: 24, Indels: 18
0.76 0.13 0.10
Matches are distributed among these distances:
53 13 0.10
54 101 0.74
55 20 0.15
56 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (54 bp):
TACCCCTAAAGGGTAAAATGATGAAATTACACCTATAAGGTAAAATGACCGTAA
Found at i:72857757 original size:24 final size:24
Alignment explanation
Indices: 72857686--72857794 Score: 94
Period size: 24 Copynumber: 4.5 Consensus size: 24
72857676 CCCTCGTGGG
* * *
72857686 TAAATGATTGATTTGTCCATGATG
1 TAAATGACTGATTTGTCTATGATT
* * *
72857710 TATATGACTGATTTGGCTTTGATT
1 TAAATGACTGATTTGTCTATGATT
72857734 TAAATGACTGATTTGTCTATGATT
1 TAAATGACTGATTTGTCTATGATT
*** * *
72857758 GGTATGA-TCGATTTGCCTGTGATT
1 TAAATGACT-GATTTGTCTATGATT
*
72857782 TGAATGACTGATT
1 TAAATGACTGATT
72857795 CTGAGTATTG
Statistics
Matches: 67, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
23 1 0.01
24 65 0.97
25 1 0.01
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTATGATT
Found at i:72857764 original size:48 final size:48
Alignment explanation
Indices: 72857686--72857794 Score: 132
Period size: 48 Copynumber: 2.3 Consensus size: 48
72857676 CCCTCGTGGG
* * *
72857686 TAAATGATTGATTTGTCCATGATGTATATGA-CTGATTTGGCTTTGATT
1 TAAATGACTGATTTGTCCATGATGTATATGATC-GATTTGCCTGTGATT
* *
72857734 TAAATGACTGATTTGTCTATGAT-TGGTATGATCGATTTGCCTGTGATT
1 TAAATGACTGATTTGTCCATGATGT-ATATGATCGATTTGCCTGTGATT
*
72857782 TGAATGACTGATT
1 TAAATGACTGATT
72857795 CTGAGTATTG
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
47 1 0.02
48 51 0.96
49 1 0.02
ACGTcount: A:0.25, C:0.09, G:0.22, T:0.44
Consensus pattern (48 bp):
TAAATGACTGATTTGTCCATGATGTATATGATCGATTTGCCTGTGATT
Found at i:72857852 original size:31 final size:31
Alignment explanation
Indices: 72857817--72857881 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
72857807 TTCTGCATAC
72857817 ATGACATACTGCATGGGATTTGGATACTGTT
1 ATGACATACTGCATGGGATTTGGATACTGTT
72857848 ATGACATACTGCATGGGATTTGGATACTGTT
1 ATGACATACTGCATGGGATTTGGATACTGTT
72857879 ATG
1 ATG
72857882 GAGGAAGTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.35
Consensus pattern (31 bp):
ATGACATACTGCATGGGATTTGGATACTGTT
Found at i:72858011 original size:32 final size:32
Alignment explanation
Indices: 72857970--72858204 Score: 357
Period size: 32 Copynumber: 7.4 Consensus size: 32
72857960 CCTTCGATGC
* *
72857970 TACTGATGGCTTCGTGCCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
72858002 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
72858034 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
72858066 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
72858098 TATTGATGGCTTTGTGCCAATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * *
72858130 TACTGATGG-TTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATTACCGT
* *
72858162 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
72858193 TACTTATGGCTT
1 TACTGATGGCTT
72858205 GTAGCCATTC
Statistics
Matches: 189, Mismatches: 12, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
31 13 0.07
32 174 0.92
33 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Found at i:72858910 original size:16 final size:17
Alignment explanation
Indices: 72858878--72858911 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
72858868 ATTCTAGAAG
72858878 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
72858896 GGTTTTCAA-AAAACAT
1 GGTTTTCAAGAAAACAT
72858912 TTCAATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
18 9 0.56
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:72862269 original size:27 final size:27
Alignment explanation
Indices: 72862238--72862304 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
72862228 GTAGAGCATG
72862238 CAGTCATTTTATAACATAGGGGCATAA
1 CAGTCATTTTATAACATAGGGGCATAA
* *
72862265 CAGTCATTTTACT-ACGTGGGGGCATAA
1 CAGTCATTTTA-TAACATAGGGGCATAA
72862292 CAGTCATTTTATA
1 CAGTCATTTTATA
72862305 TCAGTTTGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
26 1 0.03
27 34 0.94
28 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (27 bp):
CAGTCATTTTATAACATAGGGGCATAA
Found at i:72865972 original size:20 final size:19
Alignment explanation
Indices: 72865944--72865994 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
72865934 AATCAAGTGC
*
72865944 AAATGATTTTAACCATGTCA
1 AAATAATTTTAACCA-GTCA
* *
72865964 AAATAATTTCAATCAGTCA
1 AAATAATTTTAACCAGTCA
*
72865983 AAATCATTTTAA
1 AAATAATTTTAA
72865995 AATGATTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.35
Consensus pattern (19 bp):
AAATAATTTTAACCAGTCA
Found at i:72872135 original size:42 final size:42
Alignment explanation
Indices: 72872080--72872173 Score: 145
Period size: 42 Copynumber: 2.2 Consensus size: 42
72872070 TGGCACACAC
* *
72872080 CCGTGTAACTCTCGAAA-CTGGCCCACATGCCCGTGTGCTAGG
1 CCGTGTAACTCTCGAAATC-AGCCCACACGCCCGTGTGCTAGG
72872122 CCGTGTAACTCTCGAAATCAGCCCACACGCCCGTGTGCTAGG
1 CCGTGTAACTCTCGAAATCAGCCCACACGCCCGTGTGCTAGG
*
72872164 CCATGTAACT
1 CCGTGTAACT
72872174 AACTAACTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.21, C:0.34, G:0.23, T:0.21
Consensus pattern (42 bp):
CCGTGTAACTCTCGAAATCAGCCCACACGCCCGTGTGCTAGG
Found at i:72883106 original size:20 final size:20
Alignment explanation
Indices: 72883074--72883111 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
72883064 AATATTTTAA
*
72883074 ATATATGATTATAGGTTTGT
1 ATATATGATTATAAGTTTGT
72883094 ATATATAGA-TATAAGTTT
1 ATATAT-GATTATAAGTTT
72883112 ATGTAGCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (20 bp):
ATATATGATTATAAGTTTGT
Found at i:72883616 original size:61 final size:61
Alignment explanation
Indices: 72883521--72883645 Score: 196
Period size: 61 Copynumber: 2.0 Consensus size: 61
72883511 ATGTGTGACA
* * *
72883521 TACGGCCTGGCAACATAGTTGTGTGTCCTCTGTTAGTTTCTTTGCATACAAGTGAGGGTGT
1 TACGGCCTGGCAACACAGCTGTGTGTCCTCTGTTAGTTTCTTTGCATACAAGTGAGGGAGT
* * *
72883582 TACGGGCTGGCGACACAGCTGTGTGTCCTCTGTTAGTTTCTTTGCATACAAGTTAGGGAGT
1 TACGGCCTGGCAACACAGCTGTGTGTCCTCTGTTAGTTTCTTTGCATACAAGTGAGGGAGT
72883643 TAC
1 TAC
72883646 ATGTCCCTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.34
Consensus pattern (61 bp):
TACGGCCTGGCAACACAGCTGTGTGTCCTCTGTTAGTTTCTTTGCATACAAGTGAGGGAGT
Found at i:72895678 original size:45 final size:45
Alignment explanation
Indices: 72895614--72895702 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
72895604 AATAGATACT
* * *
72895614 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
*
72895659 CGGTGGAATCAACACATAGCAACCACTTTACTAATCAATGATGT
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
72895703 TCAGTTCACA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:72895820 original size:51 final size:50
Alignment explanation
Indices: 72895709--72895899 Score: 202
Period size: 51 Copynumber: 3.8 Consensus size: 50
72895699 ATGTTCAGTT
* * * * **
72895709 CACATAGTAGCCTGCACATAGGTACTATACATGTGACCATTACCATTCAATA
1 CACATAGTAGCCTGCACATA-GTACTACACATGTGACCA-AACTATACGGTA
* * *
72895761 CACGTAGTAGCCTGCACATAGTACTACACATGTGATCGAAACTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CCAAACTATACGGTA
* * * * * * *
72895812 CGCATAGTAGCCAGCACATAGTACTAGACATGCGACCTATCTTTACGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCAAACTATACGGTA
*
72895862 CACGTAGTAGCCTGCACATAGTACTACACATGTGACCA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCA
72895900 TCACTTTCAC
Statistics
Matches: 114, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
50 42 0.37
51 51 0.45
52 21 0.18
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCAAACTATACGGTA
Found at i:72899432 original size:50 final size:50
Alignment explanation
Indices: 72899324--72899477 Score: 182
Period size: 50 Copynumber: 3.0 Consensus size: 50
72899314 GGGGACGAGA
* ** *
72899324 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGATGTTATAAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG---TACCGA-G--ATGAGAGG
72899380 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGTACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGTACCGAGATGAGAGG
* * * *
72899430 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGTACCGAGATGAGA
72899478 ACTCTCATGT
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
50 51 0.57
52 1 0.01
53 4 0.04
56 34 0.38
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGTACCGAGATGAGAGG
Found at i:72899501 original size:50 final size:50
Alignment explanation
Indices: 72899380--72899508 Score: 132
Period size: 50 Copynumber: 2.6 Consensus size: 50
72899370 TTATAAGAGG
* * * * **
72899380 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGTACCGAGATGAGAGG
1 TCCCACGTAAGAACATATCTGGGACATGGCATGGGCACCGAGATGAGAAC
* * * *
72899430 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAGAACATATCTGGGACATGGCATGGGCACCGAGATGAGAAC
* * * *
72899480 TCTCATGTACGAACATATCTGGGATATGG
1 TCCCACGTAAGAACATATCTGGGACATGG
72899509 TATTTGCAAT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 66 1.00
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (50 bp):
TCCCACGTAAGAACATATCTGGGACATGGCATGGGCACCGAGATGAGAAC
Found at i:72899791 original size:20 final size:20
Alignment explanation
Indices: 72899766--72899804 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
72899756 TGAGTTATTT
72899766 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
72899786 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
72899805 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:72903103 original size:18 final size:18
Alignment explanation
Indices: 72903082--72903125 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
72903072 AAAGGAAGAC
72903082 AGAAAAAGA-AATCGAAAA
1 AGAAAAAGAGAAT-GAAAA
72903100 AGAAAAAGAGAATGAAAA
1 AGAAAAAGAGAATGAAAA
72903118 AGAGAAAA
1 AGA-AAAA
72903126 AAGAGATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (18 bp):
AGAAAAAGAGAATGAAAA
Found at i:72904927 original size:33 final size:34
Alignment explanation
Indices: 72904890--72904961 Score: 119
Period size: 33 Copynumber: 2.1 Consensus size: 34
72904880 GAGCTAGTTT
72904890 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
* *
72904923 ATTAATTTTAGTTCAGCTTAAATAAGTGTTAGTA
1 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
72904957 ATTAA
1 ATTAA
72904962 TTTGTTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
33 30 0.83
34 6 0.17
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (34 bp):
ATTAAATTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:72926602 original size:27 final size:27
Alignment explanation
Indices: 72926571--72926748 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72926561 TAAATTGTAC
72926571 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
72926598 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72926624 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72926652 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
72926680 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72926707 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72926734 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72926749 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72926685 original size:82 final size:81
Alignment explanation
Indices: 72926572--72926727 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72926562 AAATTGTACA
* *
72926572 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
72926636 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
72926653 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
72926718 TGCGAGTTGA
65 TGCGAATTGA
72926728 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72926739 original size:82 final size:81
Alignment explanation
Indices: 72926568--72926748 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72926558 GATTAAATTG
* *
72926568 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
72926633 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
72926649 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
72926713 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72926731 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72926749 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72931744 original size:19 final size:20
Alignment explanation
Indices: 72931716--72931771 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 20
72931706 CTATCGAATC
72931716 AAAA-TTGTAATTACA-A-AA
1 AAAACTTGTAATTA-ATACAA
72931734 AAAACTTGTAATTAATACAA
1 AAAACTTGTAATTAATACAA
72931754 AGAAACTTGTAATTAATA
1 A-AAACTTGTAATTAATA
72931772 TATATATTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.15
19 10 0.29
20 3 0.09
21 16 0.47
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (20 bp):
AAAACTTGTAATTAATACAA
Found at i:72932079 original size:13 final size:13
Alignment explanation
Indices: 72932061--72932087 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72932051 CATAAAAAGC
72932061 AAACTTTTACAAA
1 AAACTTTTACAAA
72932074 AAACTTTTACAAA
1 AAACTTTTACAAA
72932087 A
1 A
72932088 GTTTTTCAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
AAACTTTTACAAA
Found at i:72933451 original size:26 final size:26
Alignment explanation
Indices: 72933422--72933471 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
72933412 CACCAATATC
*
72933422 ATAGCAAAGCTGCCAGTAATAGTATT
1 ATAGCAAAGCTGCCAGTAACAGTATT
*
72933448 ATAGCGAAGCTGCCAGTAACAGTA
1 ATAGCAAAGCTGCCAGTAACAGTA
72933472 AATGCGACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (26 bp):
ATAGCAAAGCTGCCAGTAACAGTATT
Found at i:72933687 original size:27 final size:27
Alignment explanation
Indices: 72933657--72933796 Score: 167
Period size: 27 Copynumber: 5.3 Consensus size: 27
72933647 GGGTATAATA
72933657 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
72933684 GTCATTTTACCTTATGAGGGT-TTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
72933710 GTCATTTCACCCTATGGAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
72933737 GTCATTTTACCATATAGGGGTATTT-G
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
72933763 ATCATTTTATCCTAAGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
72933790 ATCATTT
1 GTCATTT
72933797 ATTGACCTCT
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 42 0.44
27 53 0.56
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:72933722 original size:53 final size:53
Alignment explanation
Indices: 72933657--72933796 Score: 176
Period size: 53 Copynumber: 2.6 Consensus size: 53
72933647 GGGTATAATA
*
72933657 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCTTAT-GAGGGT-TTTCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCATATAG-GGGTATTT-G
* *
72933710 GTCATTTCACCCTATGGAGGTATTTCGGTCATTTTACCATATAGGGGTATTTG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCATATAGGGGTATTTG
* * * * *
72933763 ATCATTTTATCCTAAGAGGGTATTTCGATCATTT
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTT
72933797 ATTGACCTCT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
53 71 0.95
54 4 0.05
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.42
Consensus pattern (53 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCATATAGGGGTATTTG
Found at i:72933797 original size:26 final size:27
Alignment explanation
Indices: 72933673--72933798 Score: 95
Period size: 26 Copynumber: 4.7 Consensus size: 27
72933663 TTACCCTATG
* *
72933673 GGGGTATTTCGGTCATTT-TACCTTAT
1 GGGGTATTTCGGTCATTTATACCATAA
* * *
72933699 GAGGGT-TTTCGGTCATTT-CACCCTAT
1 G-GGGTATTTCGGTCATTTATACCATAA
72933725 GGAGGTATTTCGGTCATTT-TACCATATA
1 GG-GGTATTTCGGTCATTTATACCATA-A
*
72933753 GGGGTATTT-GATCATTT-TATCC-TAA
1 GGGGTATTTCGGTCATTTATA-CCATAA
*
72933778 GAGGGTATTTCGATCATTTAT
1 G-GGGTATTTCGGTCATTTAT
72933799 TGACCTCTCG
Statistics
Matches: 86, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
25 3 0.03
26 42 0.49
27 38 0.44
28 3 0.03
ACGTcount: A:0.21, C:0.15, G:0.22, T:0.42
Consensus pattern (27 bp):
GGGGTATTTCGGTCATTTATACCATAA
Found at i:72946520 original size:12 final size:12
Alignment explanation
Indices: 72946498--72946545 Score: 55
Period size: 11 Copynumber: 4.2 Consensus size: 12
72946488 GGAAATTTGG
72946498 GAAAAAT-AAAT
1 GAAAAATAAAAT
72946509 GAAAAATAAAAT
1 GAAAAATAAAAT
*
72946521 -AAAATTAAAAT
1 GAAAAATAAAAT
* *
72946532 TAAAATTAAAAT
1 GAAAAATAAAAT
72946544 GA
1 GA
72946546 TCCCCACTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
11 17 0.52
12 16 0.48
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (12 bp):
GAAAAATAAAAT
Found at i:72946529 original size:6 final size:6
Alignment explanation
Indices: 72946505--72946543 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
72946495 TGGGAAAAAT
* *
72946505 AAATGA AAAATA AAA-TA AAATTA AAATTA AAATTA AAAT
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAAT
72946544 GATCCCCACT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (6 bp):
AAATTA
Found at i:72947406 original size:14 final size:15
Alignment explanation
Indices: 72947380--72947413 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
72947370 TCTTTCATAA
72947380 ATTAAAAATTTAAGT
1 ATTAAAAATTTAAGT
*
72947395 GTTAAAAA-TTAAGT
1 ATTAAAAATTTAAGT
72947409 ATTAA
1 ATTAA
72947414 TTTTTTATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (15 bp):
ATTAAAAATTTAAGT
Found at i:72947768 original size:7 final size:7
Alignment explanation
Indices: 72947756--72947801 Score: 56
Period size: 7 Copynumber: 6.0 Consensus size: 7
72947746 AACTCATTTA
72947756 AAATATT
1 AAATATT
72947763 AAATATTT
1 AAATA-TT
72947771 AAAATATT
1 -AAATATT
72947779 AAATATTT
1 AAATA-TT
72947787 AAAATATT
1 -AAATATT
72947795 AAATATT
1 AAATATT
72947802 TTAAACATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
7 17 0.49
8 8 0.23
9 10 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:72947772 original size:16 final size:16
Alignment explanation
Indices: 72947751--72947802 Score: 104
Period size: 16 Copynumber: 3.2 Consensus size: 16
72947741 TATCAAACTC
72947751 ATTTAAAATATTAAAT
1 ATTTAAAATATTAAAT
72947767 ATTTAAAATATTAAAT
1 ATTTAAAATATTAAAT
72947783 ATTTAAAATATTAAAT
1 ATTTAAAATATTAAAT
72947799 ATTT
1 ATTT
72947803 TAAACATTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTTAAAATATTAAAT
Found at i:72948920 original size:21 final size:21
Alignment explanation
Indices: 72948885--72948934 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
72948875 CATTGTTTCT
*
72948885 AATCTCACCACTACAATATCC
1 AATCTCACCACTACAATAACC
** * *
72948906 AATCTCACCTTTACAGTAACT
1 AATCTCACCACTACAATAACC
72948927 AATCTCAC
1 AATCTCAC
72948935 TGTCACCGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.34, G:0.02, T:0.28
Consensus pattern (21 bp):
AATCTCACCACTACAATAACC
Found at i:72952457 original size:9 final size:9
Alignment explanation
Indices: 72952409--72952502 Score: 64
Period size: 9 Copynumber: 10.1 Consensus size: 9
72952399 CTTTATAAAA
72952409 TTTTATAATT
1 TTTTAT-ATT
72952419 GTTTTA-ATAT
1 -TTTTATAT-T
* *
72952429 TTCTATATA
1 TTTTATATT
*
72952438 TTTTACAATT
1 TTTTA-TATT
72952448 TTTTATATT
1 TTTTATATT
* *
72952457 TTTTACAAT
1 TTTTATATT
72952466 TTTTATATT
1 TTTTATATT
* *
72952475 TCTTCTATT
1 TTTTATATT
*
72952484 TTTAATATT
1 TTTTATATT
*
72952493 TTTAATATT
1 TTTTATATT
72952502 T
1 T
72952503 GATTTTTTTT
Statistics
Matches: 65, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
9 50 0.77
10 10 0.15
11 5 0.08
ACGTcount: A:0.28, C:0.05, G:0.01, T:0.66
Consensus pattern (9 bp):
TTTTATATT
Found at i:72952474 original size:18 final size:18
Alignment explanation
Indices: 72952409--72952495 Score: 79
Period size: 18 Copynumber: 4.7 Consensus size: 18
72952399 CTTTATAAAA
72952409 TTTTATAATTGTTTTA-ATAT
1 TTTTAT-ATT-TTTTACA-AT
* *
72952429 TTCTATATATTTTACAATT
1 TTTTATATTTTTTACAA-T
72952448 TTTTATATTTTTTACAAT
1 TTTTATATTTTTTACAAT
* *
72952466 TTTTATATTTCTT-CTAT
1 TTTTATATTTTTTACAAT
72952483 TTTTAATATTTTT
1 TTTT-ATATTTTT
72952496 AATATTTGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
17 7 0.12
18 26 0.46
19 19 0.33
20 5 0.09
ACGTcount: A:0.26, C:0.06, G:0.01, T:0.67
Consensus pattern (18 bp):
TTTTATATTTTTTACAAT
Found at i:72952475 original size:27 final size:25
Alignment explanation
Indices: 72952406--72952515 Score: 69
Period size: 26 Copynumber: 4.1 Consensus size: 25
72952396 CGACTTTATA
*
72952406 AAATTTTATAATTGTTTTAATATTTCTAT
1 AAATTTT-TAATT-TTTT-ATATTT-TTT
* *
72952435 ATATTTTACAATTTTTTATATTTTTT
1 AAATTTT-TAATTTTTTATATTTTTT
* *
72952461 ACAATTTTTATATTTCTTCTA-TTTTT
1 A-AATTTTTA-ATTTTTTATATTTTTT
* * *
72952487 AATATTTTTAATATTTGATTTTTTTT
1 AA-ATTTTTAATTTTTTATATTTTTT
72952513 AAA
1 AAA
72952516 ATTTAATAAT
Statistics
Matches: 65, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
25 7 0.11
26 24 0.37
27 19 0.29
28 4 0.06
29 11 0.17
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (25 bp):
AAATTTTTAATTTTTTATATTTTTT
Found at i:72952789 original size:90 final size:89
Alignment explanation
Indices: 72952607--72952797 Score: 213
Period size: 89 Copynumber: 2.1 Consensus size: 89
72952597 TGTTTTTTTT
* * *
72952607 AAGTTTGAGGGTCTTTTTTTATACATTTTGAAAGTTCAAGTACCCAATTGAATGCCAAAAAAAAG
1 AAGTTTGAGGGT-ATTTTTTATACATTTTGAAAGTTCAAGTACCCAAATGAATGCAAAAAAAAAG
* *
72952672 TAGGGGGTTAATTGCTTTTTCTGAAA
65 TAAGGGGTTAATTGCTTTTCCT-AAA
* * * * ** *
72952698 AGGTTTTAGGGTATTTTTTATGCATTTTGAAAGTTTAAGTATTCAAATGATTG-AAAAAAAAAGT
1 AAGTTTGAGGGTATTTTTTATACATTTTGAAAGTTCAAGTACCCAAATGAATGCAAAAAAAAAGT
** *
72952762 AATTGTTTAATTGCTTTTCCTAAAA
66 AAGGGGTTAATTGCTTTTCCT-AAA
72952787 AAGTTTGAGGG
1 AAGTTTGAGGG
72952798 CTTTTTGTAC
Statistics
Matches: 82, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 38 0.46
90 34 0.41
91 10 0.12
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (89 bp):
AAGTTTGAGGGTATTTTTTATACATTTTGAAAGTTCAAGTACCCAAATGAATGCAAAAAAAAAGT
AAGGGGTTAATTGCTTTTCCTAAA
Found at i:72953004 original size:21 final size:21
Alignment explanation
Indices: 72952957--72953005 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
72952947 TGATAATCTA
*
72952957 AAAAATATATTAAAAATTAAT
1 AAAAATATATTAAAAAATAAT
*
72952978 AAAAATATTTTAAAAAATAA-
1 AAAAATATATTAAAAAATAAT
72952998 AACAAATA
1 AA-AAATA
72953006 CAAACAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (21 bp):
AAAAATATATTAAAAAATAAT
Found at i:72954856 original size:43 final size:43
Alignment explanation
Indices: 72954795--72954999 Score: 209
Period size: 43 Copynumber: 4.8 Consensus size: 43
72954785 CGTCGCTAAA
* * *
72954795 TTTAGCGGCGCTTTTCTCACAAACGCCGCTAAAGACTAGGACC
1 TTTAGCGACGCTTTTCTCACAAACGCCGCTAAAGACCAAGACC
* *
72954838 TTTAGCGACGCTTTTCTCACAAACACCGCTAAAGACCAAGACA
1 TTTAGCGACGCTTTTCTCACAAACGCCGCTAAAGACCAAGACC
** * ** *
72954881 TTTAGCGACAATTTTCCCACAAGTGCCGCTAAAGACCAGGACC
1 TTTAGCGACGCTTTTCTCACAAACGCCGCTAAAGACCAAGACC
* *
72954924 TTTAGC-AGCGCTTTT-TCCACAAACGCCACTATAG-CTCAAGACC
1 TTTAGCGA-CGCTTTTCT-CACAAACGCCGCTAAAGAC-CAAGACC
* ** *
72954967 TTTAGCAACGCTTTGATTACAAACGCCGCTAAA
1 TTTAGCGACGCTTTTCTCACAAACGCCGCTAAA
72955000 AGTACTATTA
Statistics
Matches: 132, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
42 2 0.02
43 128 0.97
44 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (43 bp):
TTTAGCGACGCTTTTCTCACAAACGCCGCTAAAGACCAAGACC
Found at i:72955262 original size:15 final size:15
Alignment explanation
Indices: 72955242--72955272 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
72955232 AGGGATATGG
72955242 ATCATCTTCATCTTC
1 ATCATCTTCATCTTC
*
72955257 ATCATCTTCTTCTTC
1 ATCATCTTCATCTTC
72955272 A
1 A
72955273 CTTTCAACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.32, G:0.00, T:0.48
Consensus pattern (15 bp):
ATCATCTTCATCTTC
Found at i:72959714 original size:12 final size:12
Alignment explanation
Indices: 72959697--72959725 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
72959687 GAATTTTGGG
72959697 ATAAAAAAATAT
1 ATAAAAAAATAT
72959709 ATAAAAAAATAT
1 ATAAAAAAATAT
72959721 ATAAA
1 ATAAA
72959726 CACAAAACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAAAAAAATAT
Found at i:72960326 original size:14 final size:13
Alignment explanation
Indices: 72960309--72960355 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 13
72960299 ATAAAACATA
72960309 AACCCTAAACCCCT
1 AACCCT-AACCCCT
*
72960323 AACCCCTAACCTCT
1 AA-CCCTAACCCCT
72960337 AACTCCTAACCCCT
1 AAC-CCTAACCCCT
72960351 AACCC
1 AACCC
72960356 CTCTTTTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 3 0.10
14 22 0.76
15 4 0.14
ACGTcount: A:0.32, C:0.51, G:0.00, T:0.17
Consensus pattern (13 bp):
AACCCTAACCCCT
Found at i:72960333 original size:21 final size:20
Alignment explanation
Indices: 72960309--72960355 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 20
72960299 ATAAAACATA
72960309 AACCCTAAACCCCTAACCCCT
1 AACCCT-AACCCCTAACCCCT
*
72960330 AACCTCTAACTCCTAACCCCT
1 AACC-CTAACCCCTAACCCCT
72960351 AACCC
1 AACCC
72960356 CTCTTTTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 21 0.88
22 2 0.08
ACGTcount: A:0.32, C:0.51, G:0.00, T:0.17
Consensus pattern (20 bp):
AACCCTAACCCCTAACCCCT
Found at i:72960489 original size:7 final size:7
Alignment explanation
Indices: 72960476--72960514 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
72960466 CTCTTAGCCT
72960476 CTAACCC
1 CTAACCC
*
72960483 TTAACCC
1 CTAACCC
72960490 CTAACCC
1 CTAACCC
**
72960497 CTAACTA
1 CTAACCC
72960504 CTAACCC
1 CTAACCC
72960511 CTAA
1 CTAA
72960515 ACCTTATTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.33, C:0.46, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAACCC
Found at i:72960582 original size:13 final size:13
Alignment explanation
Indices: 72960557--72960594 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
72960547 AATTAATCTA
72960557 AACCCTAAACCCT
1 AACCCTAAACCCT
72960570 AACCC-AAATCCCT
1 AACCCTAAA-CCCT
*
72960583 AACCCTTAACCC
1 AACCCTAAACCC
72960595 CTAAACCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 3 0.14
13 17 0.77
14 2 0.09
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:72960595 original size:84 final size:84
Alignment explanation
Indices: 72960505--72960987 Score: 897
Period size: 84 Copynumber: 5.8 Consensus size: 84
72960495 CCCTAACTAC
72960505 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
1 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
72960570 AACCCAAATCCCTAACCCT
66 AACCCAAATCCCTAACCCT
72960589 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
1 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
72960654 AACCCAAATCCCTAACCCT
66 AACCCAAATCCCTAACCCT
72960673 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
1 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
72960738 AACCCAAATCCCTAACCCT
66 AACCCAAATCCCTAACCCT
72960757 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
1 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
72960822 AACCCAAATCCCTAACCCT
66 AACCCAAATCCCTAACCCT
*
72960841 TAACCCCTAAACCTTATTT-A-ATATAAATT-AAAACACACTAATTAATCTAAACCCTAAACCCT
1 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
72960903 AACCCAAATCCCTAACCCT
66 AACCCAAATCCCTAACCCT
* *
72960922 TAACCCCTAAACCTTATTT-A-ATATAAATT-AAAACACACTAATTAATCTAAACCTTAAACCCT
1 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
72960984 AACC
66 AACC
72960988 TAACATCGAA
Statistics
Matches: 397, Mismatches: 2, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
81 116 0.29
82 9 0.02
83 1 0.00
84 271 0.68
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.27
Consensus pattern (84 bp):
TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACACTAATTAATCTAAACCCTAAACCCT
AACCCAAATCCCTAACCCT
Found at i:72960666 original size:13 final size:13
Alignment explanation
Indices: 72960641--72960678 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
72960631 AATTAATCTA
72960641 AACCCTAAACCCT
1 AACCCTAAACCCT
72960654 AACCC-AAATCCCT
1 AACCCTAAA-CCCT
*
72960667 AACCCTTAACCC
1 AACCCTAAACCC
72960679 CTAAACCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 3 0.14
13 17 0.77
14 2 0.09
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:72960750 original size:13 final size:13
Alignment explanation
Indices: 72960725--72960762 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
72960715 AATTAATCTA
72960725 AACCCTAAACCCT
1 AACCCTAAACCCT
72960738 AACCC-AAATCCCT
1 AACCCTAAA-CCCT
*
72960751 AACCCTTAACCC
1 AACCCTAAACCC
72960763 CTAAACCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 3 0.14
13 17 0.77
14 2 0.09
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:72960834 original size:13 final size:13
Alignment explanation
Indices: 72960809--72960846 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
72960799 AATTAATCTA
72960809 AACCCTAAACCCT
1 AACCCTAAACCCT
72960822 AACCC-AAATCCCT
1 AACCCTAAA-CCCT
*
72960835 AACCCTTAACCC
1 AACCCTAAACCC
72960847 CTAAACCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 3 0.14
13 17 0.77
14 2 0.09
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:72960915 original size:13 final size:13
Alignment explanation
Indices: 72960890--72960927 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
72960880 AATTAATCTA
72960890 AACCCTAAACCCT
1 AACCCTAAACCCT
72960903 AACCC-AAATCCCT
1 AACCCTAAA-CCCT
*
72960916 AACCCTTAACCC
1 AACCCTAAACCC
72960928 CTAAACCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 3 0.14
13 17 0.77
14 2 0.09
ACGTcount: A:0.37, C:0.47, G:0.00, T:0.16
Consensus pattern (13 bp):
AACCCTAAACCCT
Found at i:72961063 original size:14 final size:15
Alignment explanation
Indices: 72961030--72961072 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
72961020 CTCTTAATCT
72961030 CTAACCCCT-AACCA
1 CTAACCCCTAAACCA
*
72961044 CTAACCCCTAAATCA
1 CTAACCCCTAAACCA
*
72961059 C-AACCCTTAAACCA
1 CTAACCCCTAAACCA
72961073 AAATCCCTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 20 0.80
15 5 0.20
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.16
Consensus pattern (15 bp):
CTAACCCCTAAACCA
Found at i:72961200 original size:14 final size:14
Alignment explanation
Indices: 72961155--72961191 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
72961145 ATCCTAAATT
72961155 AACCATATACCTTA
1 AACCATATACCTTA
*
72961169 AACCATATACCCTA
1 AACCATATACCTTA
72961183 AACCATATA
1 AACCATATA
72961192 TATTAAACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (14 bp):
AACCATATACCTTA
Found at i:72961582 original size:81 final size:81
Alignment explanation
Indices: 72961442--72961594 Score: 229
Period size: 81 Copynumber: 1.9 Consensus size: 81
72961432 AGATAAAATA
* *
72961442 TTTTTGCGGCGCTTTTTTAAAAACGCCGCTAAAAGCCTAAGCATTAGCGGCGCTTTTTCAAAAAC
1 TTTTAGCGGCGCTTTTTGAAAAACGCCGCTAAAAGCCTAAGCATTAGCGGCGCTTTTTCAAAAAC
*
72961507 GCTGCTATGCTCGGGC
66 GCCGCTATGCTCGGGC
* *
72961523 TTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAAATA-TCTGAGCATTAGCGGCGCTTTTTCAAAA
1 TTTTAGCGGCGCTTTTTGAAAAA-CGCCGCTAAA-AGCCTAAGCATTAGCGGCGCTTTTTCAAAA
72961586 ACGCCGCTA
64 ACGCCGCTA
72961595 AAGATCTGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 10 0.15
81 54 0.83
82 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (81 bp):
TTTTAGCGGCGCTTTTTGAAAAACGCCGCTAAAAGCCTAAGCATTAGCGGCGCTTTTTCAAAAAC
GCCGCTATGCTCGGGC
Found at i:72961638 original size:41 final size:41
Alignment explanation
Indices: 72961447--72961638 Score: 203
Period size: 41 Copynumber: 4.7 Consensus size: 41
72961437 AAATATTTTT
* * *
72961447 GCGGCGCTTTTTTAAAAACGCCGCTAAA-AGCCTAAGCATTA
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAGA-TCTGAGCATTA
* * * * * *
72961488 GCGGCGCTTTTTCAAAAACGCTGCT-ATGCTC-GGGCTTTTA
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAGATCTGAGC-ATTA
* *
72961528 GCGGCG-TTTTTGAAAAAGCGCCGCTAAATATCTGAGCATTA
1 GCGGCGCTTTTT-AAAAAACGCCGCTAAAGATCTGAGCATTA
* *
72961569 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATCA
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAGATCTGAGCATTA
*
72961610 GCGACGCTTTTTAAAAAACGCCGCTAAAG
1 GCGGCGCTTTTTAAAAAACGCCGCTAAAG
72961639 CCCCGAAAGG
Statistics
Matches: 123, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 7 0.06
40 21 0.17
41 87 0.71
42 8 0.07
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (41 bp):
GCGGCGCTTTTTAAAAAACGCCGCTAAAGATCTGAGCATTA
Found at i:72961722 original size:40 final size:41
Alignment explanation
Indices: 72961675--72961772 Score: 128
Period size: 40 Copynumber: 2.4 Consensus size: 41
72961665 TTTGGCTTAG
* *
72961675 ATTTTTAGCGGCGTTTTTTCAAAAAATGCCGCTAATGGTC-
1 ATTTTTAGCGGCGTTTTTTCAAAAAACGCCGCTAATGCTCA
* ** *
72961715 ATTTTTAGCGGCG-CTTTTCTGAAAGCGCCGCTAATGCTCA
1 ATTTTTAGCGGCGTTTTTTCAAAAAACGCCGCTAATGCTCA
72961755 ATTTTTAGCGGCGTTTTT
1 ATTTTTAGCGGCGTTTTT
72961773 GTCCAAACGC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 20 0.41
40 26 0.53
41 3 0.06
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.39
Consensus pattern (41 bp):
ATTTTTAGCGGCGTTTTTTCAAAAAACGCCGCTAATGCTCA
Found at i:72964102 original size:729 final size:729
Alignment explanation
Indices: 72962705--72964164 Score: 2920
Period size: 729 Copynumber: 2.0 Consensus size: 729
72962695 AAGCTCGTTA
72962705 TGGTTAGATGCACCTAAAGTTGTAAAACTTTTTTTTTTGATATTTAAAGATTTTGGCATATTCCC
1 TGGTTAGATGCACCTAAAGTTGTAAAACTTTTTTTTTTGATATTTAAAGATTTTGGCATATTCCC
72962770 TGAAGCGAATATTGCATATAATTGTTTGGAAATTATATTTATTTTGTCAACTTAGTGGCATTATA
66 TGAAGCGAATATTGCATATAATTGTTTGGAAATTATATTTATTTTGTCAACTTAGTGGCATTATA
72962835 GACTTCACATTGATTTAGACATTTCCAGTAGTAAATGTCACAATAGTACTTATATGTGGATACAA
131 GACTTCACATTGATTTAGACATTTCCAGTAGTAAATGTCACAATAGTACTTATATGTGGATACAA
72962900 ATTAAAATAAATAACAATAAAATTATCAATTTGTTACAATTTAGTACAATTGAAACACATGTTAA
196 ATTAAAATAAATAACAATAAAATTATCAATTTGTTACAATTTAGTACAATTGAAACACATGTTAA
72962965 AGTAAACCAGAAGTTTACTAATACAAATGCATTTACTACTTGGCGTGACCAGTTAGACCATCCTG
261 AGTAAACCAGAAGTTTACTAATACAAATGCATTTACTACTTGGCGTGACCAGTTAGACCATCCTG
72963030 GATCATATATGATGCGAAAATTAATTGAGAATTCATATAGACATTCATTAAAGAACCAAAAGATT
326 GATCATATATGATGCGAAAATTAATTGAGAATTCATATAGACATTCATTAAAGAACCAAAAGATT
72963095 CTTTAATTTAAAGAATTCTCATTTGTTGCTTGTTCTCAATGAAAATTGATTCTTAGAAACTCACT
391 CTTTAATTTAAAGAATTCTCATTTGTTGCTTGTTCTCAATGAAAATTGATTCTTAGAAACTCACT
72963160 TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
456 TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
72963225 GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
521 GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
72963290 ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
586 ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
72963355 CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
651 CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
72963420 TTTGTAAAAGTTTG
716 TTTGTAAAAGTTTG
72963434 TGGTTAGATGCACCTAAAGTTGTAAAACTTTTTTTTTTGATATTTAAAGATTTTGGCATATTCCC
1 TGGTTAGATGCACCTAAAGTTGTAAAACTTTTTTTTTTGATATTTAAAGATTTTGGCATATTCCC
72963499 TGAAGCGAATATTGCATATAATTGTTTGGAAATTATATTTATTTTGTCAACTTAGTGGCATTATA
66 TGAAGCGAATATTGCATATAATTGTTTGGAAATTATATTTATTTTGTCAACTTAGTGGCATTATA
72963564 GACTTCACATTGATTTAGACATTTCCAGTAGTAAATGTCACAATAGTACTTATATGTGGATACAA
131 GACTTCACATTGATTTAGACATTTCCAGTAGTAAATGTCACAATAGTACTTATATGTGGATACAA
72963629 ATTAAAATAAATAACAATAAAATTATCAATTTGTTACAATTTAGTACAATTGAAACACATGTTAA
196 ATTAAAATAAATAACAATAAAATTATCAATTTGTTACAATTTAGTACAATTGAAACACATGTTAA
72963694 AGTAAACCAGAAGTTTACTAATACAAATGCATTTACTACTTGGCGTGACCAGTTAGACCATCCTG
261 AGTAAACCAGAAGTTTACTAATACAAATGCATTTACTACTTGGCGTGACCAGTTAGACCATCCTG
72963759 GATCATATATGATGCGAAAATTAATTGAGAATTCATATAGACATTCATTAAAGAACCAAAAGATT
326 GATCATATATGATGCGAAAATTAATTGAGAATTCATATAGACATTCATTAAAGAACCAAAAGATT
72963824 CTTTAATTTAAAGAATTCTCATTTGTTGCTTGTTCTCAATGAAAATTGATTCTTAGAAACTCACT
391 CTTTAATTTAAAGAATTCTCATTTGTTGCTTGTTCTCAATGAAAATTGATTCTTAGAAACTCACT
72963889 TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
456 TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
72963954 GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
521 GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
72964019 ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
586 ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
72964084 CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
651 CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
72964149 TTTGTAAAAGTTTG
716 TTTGTAAAAGTTTG
72964163 TG
1 TG
72964165 CATAATGATT
Statistics
Matches: 731, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
729 731 1.00
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (729 bp):
TGGTTAGATGCACCTAAAGTTGTAAAACTTTTTTTTTTGATATTTAAAGATTTTGGCATATTCCC
TGAAGCGAATATTGCATATAATTGTTTGGAAATTATATTTATTTTGTCAACTTAGTGGCATTATA
GACTTCACATTGATTTAGACATTTCCAGTAGTAAATGTCACAATAGTACTTATATGTGGATACAA
ATTAAAATAAATAACAATAAAATTATCAATTTGTTACAATTTAGTACAATTGAAACACATGTTAA
AGTAAACCAGAAGTTTACTAATACAAATGCATTTACTACTTGGCGTGACCAGTTAGACCATCCTG
GATCATATATGATGCGAAAATTAATTGAGAATTCATATAGACATTCATTAAAGAACCAAAAGATT
CTTTAATTTAAAGAATTCTCATTTGTTGCTTGTTCTCAATGAAAATTGATTCTTAGAAACTCACT
TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
TTTGTAAAAGTTTG
Found at i:72965244 original size:707 final size:707
Alignment explanation
Indices: 72963889--72965302 Score: 2828
Period size: 707 Copynumber: 2.0 Consensus size: 707
72963879 GAAACTCACT
72963889 TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
1 TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
72963954 GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
66 GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
72964019 ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
131 ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
72964084 CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
196 CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
72964149 TTTGTAAAAGTTTGTGCATAATGATTTAGAGAAATTATTGATTGAACACCTCTGATTAATGTCTA
261 TTTGTAAAAGTTTGTGCATAATGATTTAGAGAAATTATTGATTGAACACCTCTGATTAATGTCTA
72964214 AACCATTACTTATGAGAACTAAACTTCCTATTTCAACATGAGATTATGTTGATTTACGTGTTGTA
326 AACCATTACTTATGAGAACTAAACTTCCTATTTCAACATGAGATTATGTTGATTTACGTGTTGTA
72964279 TGCATCAAACCAATAAGTTATAAATACTCCCCATTGCAATTAAATTTTGATCAAGAGCTAAATAT
391 TGCATCAAACCAATAAGTTATAAATACTCCCCATTGCAATTAAATTTTGATCAAGAGCTAAATAT
72964344 TTCTCATCTTTGAATTTTTGTATGTGCGTATATGTTCCAATTGCTCCACCACAACGCACAAAGAT
456 TTCTCATCTTTGAATTTTTGTATGTGCGTATATGTTCCAATTGCTCCACCACAACGCACAAAGAT
72964409 GAGTGAATCCTCAAAGAAAGTTGAGAATATATATTAGTTACAAGTCTCTTTATATTATTAGATGT
521 GAGTGAATCCTCAAAGAAAGTTGAGAATATATATTAGTTACAAGTCTCTTTATATTATTAGATGT
72964474 TTTGAATGTATTTGAGATTCAATTATGACATGATTTGTGATTACAATTTTGATTCAATAGTTTTC
586 TTTGAATGTATTTGAGATTCAATTATGACATGATTTGTGATTACAATTTTGATTCAATAGTTTTC
72964539 TCGACATTAGGGGGAGAGAAATAATAACTTGTAATGAGTTAGGGGGAGAGTAATTTG
651 TCGACATTAGGGGGAGAGAAATAATAACTTGTAATGAGTTAGGGGGAGAGTAATTTG
72964596 TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
1 TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
72964661 GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
66 GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
72964726 ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
131 ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
72964791 CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
196 CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
72964856 TTTGTAAAAGTTTGTGCATAATGATTTAGAGAAATTATTGATTGAACACCTCTGATTAATGTCTA
261 TTTGTAAAAGTTTGTGCATAATGATTTAGAGAAATTATTGATTGAACACCTCTGATTAATGTCTA
72964921 AACCATTACTTATGAGAACTAAACTTCCTATTTCAACATGAGATTATGTTGATTTACGTGTTGTA
326 AACCATTACTTATGAGAACTAAACTTCCTATTTCAACATGAGATTATGTTGATTTACGTGTTGTA
72964986 TGCATCAAACCAATAAGTTATAAATACTCCCCATTGCAATTAAATTTTGATCAAGAGCTAAATAT
391 TGCATCAAACCAATAAGTTATAAATACTCCCCATTGCAATTAAATTTTGATCAAGAGCTAAATAT
72965051 TTCTCATCTTTGAATTTTTGTATGTGCGTATATGTTCCAATTGCTCCACCACAACGCACAAAGAT
456 TTCTCATCTTTGAATTTTTGTATGTGCGTATATGTTCCAATTGCTCCACCACAACGCACAAAGAT
72965116 GAGTGAATCCTCAAAGAAAGTTGAGAATATATATTAGTTACAAGTCTCTTTATATTATTAGATGT
521 GAGTGAATCCTCAAAGAAAGTTGAGAATATATATTAGTTACAAGTCTCTTTATATTATTAGATGT
72965181 TTTGAATGTATTTGAGATTCAATTATGACATGATTTGTGATTACAATTTTGATTCAATAGTTTTC
586 TTTGAATGTATTTGAGATTCAATTATGACATGATTTGTGATTACAATTTTGATTCAATAGTTTTC
72965246 TCGACATTAGGGGGAGAGAAATAATAACTTGTAATGAGTTAGGGGGAGAGTAATTTG
651 TCGACATTAGGGGGAGAGAAATAATAACTTGTAATGAGTTAGGGGGAGAGTAATTTG
72965303 AACCAGAAGT
Statistics
Matches: 707, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
707 707 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (707 bp):
TGATAAAGCTGAGATTTAATGTCTTGCATTTCTGAAATGAATATGGGCCCATTCATCCACCATGT
GGATGATTTTGATATTATATGATTTTGGCATATACATCTACAAAATAATCACATATGTGTTATCA
ATTAGCAACCTGTCGTTTGCAAGATTGCTTGTTTAAATAATTAATTTTAGATCATACAATTAAGA
CAATTCATCTTGCTAATACTGGTGACTTTATATCTCAATCTTTTATTAATTGAGTTTGAAAAACT
TTTGTAAAAGTTTGTGCATAATGATTTAGAGAAATTATTGATTGAACACCTCTGATTAATGTCTA
AACCATTACTTATGAGAACTAAACTTCCTATTTCAACATGAGATTATGTTGATTTACGTGTTGTA
TGCATCAAACCAATAAGTTATAAATACTCCCCATTGCAATTAAATTTTGATCAAGAGCTAAATAT
TTCTCATCTTTGAATTTTTGTATGTGCGTATATGTTCCAATTGCTCCACCACAACGCACAAAGAT
GAGTGAATCCTCAAAGAAAGTTGAGAATATATATTAGTTACAAGTCTCTTTATATTATTAGATGT
TTTGAATGTATTTGAGATTCAATTATGACATGATTTGTGATTACAATTTTGATTCAATAGTTTTC
TCGACATTAGGGGGAGAGAAATAATAACTTGTAATGAGTTAGGGGGAGAGTAATTTG
Found at i:72968416 original size:27 final size:27
Alignment explanation
Indices: 72968367--72968446 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
72968357 ACAGTCATAC
* *
72968367 ATAACATTA-AGCAT-ACAGTCATTTT
1 ATAACATAAGAGCATAATAGTCATTTT
72968392 ATAACATAAGAGCATAATAGTCATTTT
1 ATAACATAAGAGCATAATAGTCATTTT
* *
72968419 ATAACATAGGGGCATAATAGTCATTTT
1 ATAACATAAGAGCATAATAGTCATTTT
72968446 A
1 A
72968447 GTCATTTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.16
26 5 0.10
27 36 0.73
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (27 bp):
ATAACATAAGAGCATAATAGTCATTTT
Found at i:72968455 original size:63 final size:63
Alignment explanation
Indices: 72968383--72968509 Score: 193
Period size: 63 Copynumber: 2.0 Consensus size: 63
72968373 TTAAGCATAC
*
72968383 AGTCATTTTATAACATAAGAGCATAA-TAGTCATTTTATAACATAGGGGCATAATAGTCATTTT
1 AGTCATTTTATAACATAAGAGCATAACCA-TCATTTTATAACATAGGGGCATAATAGTCATTTT
* * * *
72968446 AGTCATTTTATAACATATGGGCATAACCATTATTTTATAACATAGGGGTATAATAGTCATTTT
1 AGTCATTTTATAACATAAGAGCATAACCATCATTTTATAACATAGGGGCATAATAGTCATTTT
72968509 A
1 A
72968510 CCACGTGAGG
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 57 0.98
64 1 0.02
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (63 bp):
AGTCATTTTATAACATAAGAGCATAACCATCATTTTATAACATAGGGGCATAATAGTCATTTT
Found at i:72968507 original size:27 final size:28
Alignment explanation
Indices: 72968445--72968541 Score: 85
Period size: 27 Copynumber: 3.6 Consensus size: 28
72968435 ATAGTCATTT
*
72968445 TAGTCATTTTATAACATATGGGCATAAC
1 TAGTCATTTTATAACATAGGGGCATAAC
* * *
72968473 CA-TTATTTTATAACATAGGGGTATAA-
1 TAGTCATTTTATAACATAGGGGCATAAC
** *
72968499 TAGTCATTTTACCACGT-GAGGGCATAAC
1 TAGTCATTTTATAACATAG-GGGCATAAC
*
72968527 -AATCATTTTATAACA
1 TAGTCATTTTATAACA
72968542 GTTTGGGGGT
Statistics
Matches: 52, Mismatches: 14, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
26 2 0.04
27 49 0.94
28 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
Consensus pattern (28 bp):
TAGTCATTTTATAACATAGGGGCATAAC
Found at i:72980098 original size:26 final size:26
Alignment explanation
Indices: 72980068--72980148 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
72980058 AACACACTAA
*
72980068 TATCGCAGCAAACCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* * * *
72980094 TATCGTAGCGAAGCTACCAGTATTAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* * *
72980120 TATTGCACCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
72980146 TAT
1 TAT
72980149 ATGTGGCAAA
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.23
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAATAG
Found at i:72980174 original size:52 final size:52
Alignment explanation
Indices: 72980076--72980174 Score: 119
Period size: 52 Copynumber: 1.9 Consensus size: 52
72980066 AATATCGCAG
* * * *
72980076 CAAACCTGCCAGTAATAGTATCGTAGCGAAGCTACCAGTATTAGTATTGCAC
1 CAAACCTGCCAGTAACAGTATCGTAGCAAAGCCACCAGTATCAGTATTGCAC
* * *
72980128 CAAAGCTGCCAGTAACAGTATATGTGGCAAAGCCACCAGTA-CAGTAT
1 CAAACCTGCCAGTAACAGTAT-CGTAGCAAAGCCACCAGTATCAGTAT
72980175 ATTTCCTCCA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
52 24 0.62
53 15 0.38
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.22
Consensus pattern (52 bp):
CAAACCTGCCAGTAACAGTATCGTAGCAAAGCCACCAGTATCAGTATTGCAC
Found at i:72980654 original size:20 final size:20
Alignment explanation
Indices: 72980625--72980679 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
72980615 GAGCCAATTG
72980625 GCCC-ACACGGCCCATCTTA
1 GCCCAACACGGCCCATCTTA
*
72980644 GCCTAACACGGCCCATCTTA
1 GCCCAACACGGCCCATCTTA
72980664 GCCCAACACGGCCCAT
1 GCCCAACACGGCCCAT
72980680 TACGGCCCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.24, C:0.45, G:0.16, T:0.15
Consensus pattern (20 bp):
GCCCAACACGGCCCATCTTA
Found at i:72981573 original size:30 final size:30
Alignment explanation
Indices: 72981539--72981601 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
72981529 TCCATTTCAT
72981539 TTTAAAAAGAAATGTTTAAAATATGTAATA
1 TTTAAAAAGAAATGTTTAAAATATGTAATA
* *** * *
72981569 TTTAATATTTAATGTTTTAAATATTTAATA
1 TTTAAAAAGAAATGTTTAAAATATGTAATA
72981599 TTT
1 TTT
72981602 TAAATGAGTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.49
Consensus pattern (30 bp):
TTTAAAAAGAAATGTTTAAAATATGTAATA
Found at i:72981574 original size:7 final size:7
Alignment explanation
Indices: 72981558--72981601 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
72981548 AAATGTTTAA
*
72981558 AATATGT
1 AATATTT
72981565 AATATTT
1 AATATTT
72981572 AATATTT
1 AATATTT
*
72981579 AATGTTTT
1 AAT-ATTT
72981587 AAATATTT
1 -AATATTT
72981595 AATATTT
1 AATATTT
72981602 TAAATGAGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
7 23 0.72
8 6 0.19
9 3 0.09
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (7 bp):
AATATTT
Found at i:72981591 original size:16 final size:16
Alignment explanation
Indices: 72981549--72981606 Score: 66
Period size: 16 Copynumber: 3.8 Consensus size: 16
72981539 TTTAAAAAGA
* *
72981549 AATGTTTAAAATATGT
1 AATGTTTTAAATATTT
*
72981565 AAT-ATTT-AATATTT
1 AATGTTTTAAATATTT
72981579 AATGTTTTAAATATTT
1 AATGTTTTAAATATTT
*
72981595 AATATTTTAAAT
1 AATGTTTTAAAT
72981607 GAGTTTGATA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
14 9 0.26
15 5 0.14
16 21 0.60
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (16 bp):
AATGTTTTAAATATTT
Found at i:72981960 original size:14 final size:15
Alignment explanation
Indices: 72981943--72981977 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
72981933 ACAGTAAAAA
72981943 TTTAATACTTA-ATT
1 TTTAATACTTATATT
*
72981957 TTTAACACTTATATT
1 TTTAATACTTATATT
72981972 TTTAAT
1 TTTAAT
72981978 TTATGAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTAATACTTATATT
Found at i:72985388 original size:25 final size:25
Alignment explanation
Indices: 72985324--72985407 Score: 89
Period size: 25 Copynumber: 3.3 Consensus size: 25
72985314 TACTAATTTC
**
72985324 AGCTCGTGAGAGCTTACCGATTCCC
1 AGCTCGTGAGAGCTTACCGATTCAT
*
72985349 AGCTC-TCGTATGAGCTTACCGATTTAT
1 AGCTCGT-G-A-GAGCTTACCGATTCAT
* *
72985376 AGCTCGTGAGAGCATACCAATTCAT
1 AGCTCGTGAGAGCTTACCGATTCAT
72985401 AGCTCGT
1 AGCTCGT
72985408 ATGAGCATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
24 1 0.02
25 26 0.53
26 2 0.04
27 19 0.39
28 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCTCGTGAGAGCTTACCGATTCAT
Found at i:72985405 original size:52 final size:49
Alignment explanation
Indices: 72985297--72985413 Score: 135
Period size: 52 Copynumber: 2.3 Consensus size: 49
72985287 GCAGACACAC
* * * *
72985297 CACAGCTCATATGAGCTTACTAATTTCAGCTCGTGAGAGCTTACCGATT
1 CACAGCTCGTATGAGCTTACCAATTTCAGCTCGTGAGAGCATACCAATT
* * *
72985346 CCCAGCTCTCGTATGAGCTTACCGATTTATAGCTCGTGAGAGCATACCAATT
1 CACAG--CTCGTATGAGCTTACCAATTT-CAGCTCGTGAGAGCATACCAATT
*
72985398 CATAGCTCGTATGAGC
1 CACAGCTCGTATGAGC
72985414 ATACATGTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
49 4 0.07
50 11 0.20
51 18 0.32
52 23 0.41
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (49 bp):
CACAGCTCGTATGAGCTTACCAATTTCAGCTCGTGAGAGCATACCAATT
Found at i:72985413 original size:25 final size:25
Alignment explanation
Indices: 72985353--72985417 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
72985343 ATTCCCAGCT
* * *
72985353 CTCGTATGAGCTTACCGATTTATAG
1 CTCGTATGAGCATACCAATTCATAG
72985378 CTCGTGA-GAGCATACCAATTCATAG
1 CTCGT-ATGAGCATACCAATTCATAG
72985403 CTCGTATGAGCATAC
1 CTCGTATGAGCATAC
72985418 ATGTATAGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 1 0.03
25 33 0.94
26 1 0.03
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (25 bp):
CTCGTATGAGCATACCAATTCATAG
Found at i:72989798 original size:17 final size:17
Alignment explanation
Indices: 72989776--72989815 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
72989766 GTTGCACGCG
72989776 CAGGAGCGCAACACACA
1 CAGGAGCGCAACACACA
* *
72989793 CAGGAGCGGAACACGCA
1 CAGGAGCGCAACACACA
72989810 CAGGAG
1 CAGGAG
72989816 AAGGCCCAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.38, C:0.30, G:0.33, T:0.00
Consensus pattern (17 bp):
CAGGAGCGCAACACACA
Found at i:72990666 original size:44 final size:43
Alignment explanation
Indices: 72990618--72990755 Score: 113
Period size: 42 Copynumber: 3.2 Consensus size: 43
72990608 GTGCTGAGGA
*
72990618 AGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGG
1 AGGCAAGATTTG-TATCTTTAACCAGCTCCACTGCAACCGATGG
* ** * * * * *
72990662 AGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAA-CGCA-GG
1 AGGCAA-GATTTGTATCTTTAACCAGCTCCACTG-CAACCG-ATGG
72990704 AAGGCAAGATTTGTTATCTTTAACCAGCTCCACTGCAACCGATGG
1 -AGGCAAGATTTG-TATCTTTAACCAGCTCCACTGCAACCGATGG
72990749 AGGCAAG
1 AGGCAAG
72990756 GCTTTGCTTT
Statistics
Matches: 68, Mismatches: 17, Indels: 18
0.66 0.17 0.17
Matches are distributed among these distances:
42 20 0.29
43 11 0.16
44 18 0.26
45 19 0.28
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (43 bp):
AGGCAAGATTTGTATCTTTAACCAGCTCCACTGCAACCGATGG
Found at i:72990886 original size:86 final size:87
Alignment explanation
Indices: 72990614--72990907 Score: 448
Period size: 87 Copynumber: 3.4 Consensus size: 87
72990604 TCTAGTGCTG
72990614 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
72990679 CGATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
* * *
72990701 AGGAAGGCAAGATTTGTTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGCTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
*
72990766 CGATCTACTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
* * * * * **
72990788 AGGAAGGGAAGATCTGTTATCTTTAACTAGCTCCACTACAACCAAT-GAGGTGAGGCTTTGTTTT
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
*
72990852 CAATCTGCTTCGCTGTTAACGC
66 CGATCTGCTTCGCTGTTAACGC
* *
72990874 AAGAAGGCAAGATCTGCT-CCTTTAACCAGCTCCA
1 AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCA
72990908 GCTCCTTTAA
Statistics
Matches: 188, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
85 14 0.07
86 50 0.27
87 124 0.66
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (87 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTT
CGATCTGCTTCGCTGTTAACGC
Found at i:72996906 original size:85 final size:85
Alignment explanation
Indices: 72996777--72996955 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
72996767 TTTTTTATTG
*
72996777 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72996842 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72996862 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72996927 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72996947 CCCATGCTC
1 CCCATGCTC
72996956 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:73011422 original size:25 final size:25
Alignment explanation
Indices: 73011376--73011426 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 25
73011366 TGAAATTTTG
*
73011376 TTATATTTCTTTTATTACTTTAGTTT
1 TTATATTTATTTTATTACTTTA-TTT
73011402 TTAT-TTTATTTTATTTA-TTTATTT
1 TTATATTTATTTTA-TTACTTTATTT
73011426 T
1 T
73011427 CCTTCATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 4 0.17
25 12 0.52
26 7 0.30
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.75
Consensus pattern (25 bp):
TTATATTTATTTTATTACTTTATTT
Found at i:73013584 original size:11 final size:10
Alignment explanation
Indices: 73013566--73013628 Score: 63
Period size: 11 Copynumber: 5.8 Consensus size: 10
73013556 ACAAATCGAA
73013566 ACACCACCAT
1 ACACCACCAT
73013576 ACAACCACCAT
1 AC-ACCACCAT
*
73013587 ATCACCACCAC
1 A-CACCACCAT
73013598 ACCACCACCAT
1 A-CACCACCAT
*
73013609 AGCACCACCGT
1 A-CACCACCAT
73013620 ATCACCACC
1 A-CACCACC
73013629 CTTGTAACAC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
10 2 0.04
11 42 0.93
12 1 0.02
ACGTcount: A:0.37, C:0.51, G:0.03, T:0.10
Consensus pattern (10 bp):
ACACCACCAT
Found at i:73013628 original size:22 final size:22
Alignment explanation
Indices: 73013567--73013617 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
73013557 CAAATCGAAA
* * *
73013567 CACCACCATACAACCACCATAT
1 CACCACCACACCACCACCATAG
73013589 CACCACCACACCACCACCATAG
1 CACCACCACACCACCACCATAG
73013611 CACCACC
1 CACCACC
73013618 GTATCACCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.53, G:0.02, T:0.08
Consensus pattern (22 bp):
CACCACCACACCACCACCATAG
Found at i:73021821 original size:24 final size:24
Alignment explanation
Indices: 73021789--73021835 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
73021779 CTAAATTTAT
*
73021789 AACACTTTCCTTTC-CTTTCTCTTC
1 AACACTTTCC-ATCACTTTCTCTTC
*
73021813 AACATTTTCCATCACTTTCTCTT
1 AACACTTTCCATCACTTTCTCTT
73021836 ATTTCCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (24 bp):
AACACTTTCCATCACTTTCTCTTC
Found at i:73021997 original size:28 final size:28
Alignment explanation
Indices: 73021965--73022021 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
73021955 TCTTACCTTA
*
73021965 TGCCATTGATTTCAATCTTTAACTTGAT
1 TGCCATTGATTTCAATCCTTAACTTGAT
73021993 TGCCATTGATTTCAATCCTTAACTTGAT
1 TGCCATTGATTTCAATCCTTAACTTGAT
73022021 T
1 T
73022022 TTTTCCCTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.46
Consensus pattern (28 bp):
TGCCATTGATTTCAATCCTTAACTTGAT
Found at i:73024514 original size:33 final size:33
Alignment explanation
Indices: 73024472--73024594 Score: 111
Period size: 33 Copynumber: 3.4 Consensus size: 33
73024462 CGGTAGATTT
*
73024472 AGCACTTAGCAACCACCAGTGATTCGGGGAATC
1 AGCACTTAGCAACCACCAATGATTCGGGGAATC
** *
73024505 AGCACTTAGCAACCCCTTTCACATTCAAAAATACGGTGGAATC
1 AGCACTTAGCAA---C---CAC---CAATGATTCGG-GGAATC
73024548 AGCACTTAGCAACCACCAATGATTCGGGGAATC
1 AGCACTTAGCAACCACCAATGATTCGGGGAATC
*
73024581 AACACTTAGCAACC
1 AGCACTTAGCAACC
73024595 CCTTGGGGGA
Statistics
Matches: 72, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
33 31 0.43
34 8 0.11
36 1 0.01
37 3 0.04
39 3 0.04
40 1 0.01
42 7 0.10
43 18 0.25
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (33 bp):
AGCACTTAGCAACCACCAATGATTCGGGGAATC
Found at i:73024726 original size:51 final size:51
Alignment explanation
Indices: 73024650--73024979 Score: 339
Period size: 51 Copynumber: 6.5 Consensus size: 51
73024640 ACCGGTTCAT
* *
73024650 ATAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATCTGGTATGC
1 ATAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGC
* * * * * * **
73024701 ATAGTAGCCTGTAGATAGTACTACACATGTGA-CCATCA-TTATCCGATATAC
1 ATAGTAGCCTGCACATAGTACTACACATGTGATCGA--AGCTATCTGGTACGC
*
73024752 GTAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGC
1 ATAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGC
* ** * * *
73024803 ATAGTAGCTTGCACATAGTACTACACATGCCACCTAA-C-ATTCTGGTACAC
1 ATAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTA-TCTGGTACGC
* *
73024853 GTAGCAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGC
1 ATAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGC
* ** ** * *
73024904 ATAGTAGCTTGCACATAGTACTACACATGCCA-CCTATC-ATTCTGGTACAC
1 ATAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTA-TCTGGTACGC
*
73024954 GTAGTAGCCTGCACATAGTACTACAC
1 ATAGTAGCCTGCACATAGTACTACAC
73024980 GCGTGACCAT
Statistics
Matches: 228, Mismatches: 43, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
49 2 0.01
50 79 0.35
51 143 0.63
52 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (51 bp):
ATAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGC
Found at i:73024896 original size:101 final size:101
Alignment explanation
Indices: 73024651--73024979 Score: 525
Period size: 101 Copynumber: 3.2 Consensus size: 101
73024641 CCGGTTCATA
* * * * *
73024651 TAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATCTGGTATGCATAGTAGCCTGTAGA
1 TAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGCATAGTAGCTTGCACA
** * * *
73024716 TAGTACTACACATGTGACC-ATCATTATCCGATATACG
66 TAGTACTACACATGCCACCTATCA-T-TCTGGTACACG
73024753 TAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGCATAGTAGCTTGCACA
1 TAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGCATAGTAGCTTGCACA
*
73024818 TAGTACTACACATGCCACCTAACATTCTGGTACACG
66 TAGTACTACACATGCCACCTATCATTCTGGTACACG
*
73024854 TAGCAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGCATAGTAGCTTGCACA
1 TAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGCATAGTAGCTTGCACA
73024919 TAGTACTACACATGCCACCTATCATTCTGGTACACG
66 TAGTACTACACATGCCACCTATCATTCTGGTACACG
73024955 TAGTAGCCTGCACATAGTACTACAC
1 TAGTAGCCTGCACATAGTACTACAC
73024980 GCGTGACCAT
Statistics
Matches: 212, Mismatches: 14, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
101 131 0.62
102 78 0.37
103 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATCTGGTACGCATAGTAGCTTGCACA
TAGTACTACACATGCCACCTATCATTCTGGTACACG
Found at i:73026667 original size:45 final size:45
Alignment explanation
Indices: 73026612--73026707 Score: 174
Period size: 45 Copynumber: 2.1 Consensus size: 45
73026602 CCATAAAATT
*
73026612 TTCATAATTTTTGGTTTAGCCAATAAGTACAATTTATTCTTTAAA
1 TTCATCATTTTTGGTTTAGCCAATAAGTACAATTTATTCTTTAAA
*
73026657 TTCATCATTTTTGGTTTAGCCAATAAGTACAGTTTATTCTTTAAA
1 TTCATCATTTTTGGTTTAGCCAATAAGTACAATTTATTCTTTAAA
73026702 TTCATC
1 TTCATC
73026708 CCTATTCTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.47
Consensus pattern (45 bp):
TTCATCATTTTTGGTTTAGCCAATAAGTACAATTTATTCTTTAAA
Found at i:73026819 original size:15 final size:15
Alignment explanation
Indices: 73026799--73026831 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
73026789 ATTTGTTTCT
73026799 ATTGAAAATAGACTC
1 ATTGAAAATAGACTC
73026814 ATTGAAAATAGACTC
1 ATTGAAAATAGACTC
73026829 ATT
1 ATT
73026832 AAGGATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (15 bp):
ATTGAAAATAGACTC
Found at i:73031157 original size:61 final size:60
Alignment explanation
Indices: 73031061--73031289 Score: 215
Period size: 61 Copynumber: 3.8 Consensus size: 60
73031051 TTGACAGAAA
* * *
73031061 TCACCACAAAGGCTTACCTTTCAAGAGTTTTGCCACAAAGGCTATCCTTTACATCCAGTAC
1 TCACCACAAAGGCTTTCCTGTCCAGAG-TTTGCCACAAAGGCTATCCTTTACATCCAGTAC
* * * * * *
73031122 TCTCTACAATGGCTTTCCTGTCCAGAGTTTAGCCACAAAGGTTGTCCTTTACATCTAGTAC
1 TCACCACAAAGGCTTTCCTGTCCAGAGTTT-GCCACAAAGGCTATCCTTTACATCCAGTAC
* * * * ** * *
73031183 TCACCACAAAGGCTTTTCTGTCCAGAGTGTTGCCACAAATGTTGTATTTTATATCTAGTAC
1 TCACCACAAAGGCTTTCCTGTCCAGAGT-TTGCCACAAAGGCTATCCTTTACATCCAGTAC
* * * * * *
73031244 TCGCCACAAAGGCTTTCCTATCAAAAGTTTTGCCATAAAGGTTATC
1 TCACCACAAAGGCTTTCCTGTCCAGAG-TTTGCCACAAAGGCTATC
73031290 TTTCTCCTGG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
60 3 0.02
61 133 0.96
62 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (60 bp):
TCACCACAAAGGCTTTCCTGTCCAGAGTTTGCCACAAAGGCTATCCTTTACATCCAGTAC
Found at i:73031284 original size:122 final size:122
Alignment explanation
Indices: 73031061--73031286 Score: 272
Period size: 122 Copynumber: 1.9 Consensus size: 122
73031051 TTGACAGAAA
* * * *
73031061 TCACCACAAAGGCTTACCTTTCAAGAGTTTTGCCACAAAGGCTATCCTTTACATCCAGTACTCTC
1 TCACCACAAAGGCTTACCTGTCAAGAGTGTTGCCACAAAGGCTATACTTTACATCCAGTACTCGC
* * * * *
73031126 TACAATGGCTTTCCTGTCCAGAGTTTAGCCACAAAGGTTGTCCTTTACATCTAGTAC
66 CACAAAGGCTTTCCTATCAAAAGTTTAGCCACAAAGGTTGTCCTTTACATCTAGTAC
** * * * * * * *
73031183 TCACCACAAAGGCTTTTCTGTCCAGAGTGTTGCCACAAATGTTGTATTTTATATCTAGTACTCGC
1 TCACCACAAAGGCTTACCTGTCAAGAGTGTTGCCACAAAGGCTATACTTTACATCCAGTACTCGC
* *
73031248 CACAAAGGCTTTCCTATCAAAAGTTTTGCCATAAAGGTT
66 CACAAAGGCTTTCCTATCAAAAGTTTAGCCACAAAGGTT
73031287 ATCTTTCTCC
Statistics
Matches: 84, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
122 84 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (122 bp):
TCACCACAAAGGCTTACCTGTCAAGAGTGTTGCCACAAAGGCTATACTTTACATCCAGTACTCGC
CACAAAGGCTTTCCTATCAAAAGTTTAGCCACAAAGGTTGTCCTTTACATCTAGTAC
Found at i:73031543 original size:18 final size:19
Alignment explanation
Indices: 73031508--73031543 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73031498 TGGGACATTG
*
73031508 ATTTTGGATTTTACTTTGT
1 ATTTTGGATTTGACTTTGT
73031527 ATTTTGG-TTTGACTTTG
1 ATTTTGGATTTGACTTTG
73031544 CATGATTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.14, C:0.06, G:0.19, T:0.61
Consensus pattern (19 bp):
ATTTTGGATTTGACTTTGT
Found at i:73032430 original size:20 final size:20
Alignment explanation
Indices: 73032359--73032431 Score: 67
Period size: 20 Copynumber: 3.6 Consensus size: 20
73032349 CCAATTTGGG
* * *
73032359 GACAAGCCACCAGTATTGCA
1 GACAAGCTACCAGTAATGTA
* * * *
73032379 GATAAACTGCCAGTAATGTG
1 GACAAGCTACCAGTAATGTA
73032399 GACAAG-TCACCAGTAATGTA
1 GACAAGCT-ACCAGTAATGTA
73032419 GACAAGCTACCAG
1 GACAAGCTACCAG
73032432 ATTTGTGGAC
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
19 1 0.03
20 38 0.95
21 1 0.03
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (20 bp):
GACAAGCTACCAGTAATGTA
Found at i:73032474 original size:28 final size:29
Alignment explanation
Indices: 73032418--73032475 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
73032408 CCAGTAATGT
73032418 AGACAAGCTACCAGATTTGTGGACAAGCC
1 AGACAAGCTACCAGATTTGTGGACAAGCC
* * *
73032447 AGACAAGTTGCCAGA-TTGTGGAGAAGCC
1 AGACAAGCTACCAGATTTGTGGACAAGCC
73032475 A
1 A
73032476 CCAATAATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.17
Consensus pattern (29 bp):
AGACAAGCTACCAGATTTGTGGACAAGCC
Found at i:73032506 original size:68 final size:69
Alignment explanation
Indices: 73032386--73032515 Score: 163
Period size: 68 Copynumber: 1.9 Consensus size: 69
73032376 GCAGATAAAC
* * * * *
73032386 TGCCAGTAATGTGGACAAGTCACCAGTAATGTAGACAAGCTACCAGATTTGTGGACAAGCCAGAC
1 TGCCAGTAATGTGGACAAGCCACCAATAATGCAAACAAGCTACCAGAATTGTGGACAAGCCAGAC
73032451 AAGT
66 AAGT
* * * * *
73032455 TGCCAG-ATTGTGGAGAAGCCACCAATAATGCAAACAAGCTGCTAGAATTGTGGACTAGCCA
1 TGCCAGTAATGTGGACAAGCCACCAATAATGCAAACAAGCTACCAGAATTGTGGACAAGCCA
73032516 TTAGTAATGT
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
68 45 0.88
69 6 0.12
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (69 bp):
TGCCAGTAATGTGGACAAGCCACCAATAATGCAAACAAGCTACCAGAATTGTGGACAAGCCAGAC
AAGT
Found at i:73034862 original size:22 final size:22
Alignment explanation
Indices: 73034831--73034873 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
73034821 TACACCAAAA
*
73034831 TAGGCTTTTAGCGGCATTTTTT
1 TAGGCCTTTAGCGGCATTTTTT
*
73034853 TAGGCCTTTAGCGGCGTTTTT
1 TAGGCCTTTAGCGGCATTTTT
73034874 AAGCGCCGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.16, G:0.26, T:0.47
Consensus pattern (22 bp):
TAGGCCTTTAGCGGCATTTTTT
Found at i:73034991 original size:43 final size:43
Alignment explanation
Indices: 73034943--73035156 Score: 261
Period size: 43 Copynumber: 5.0 Consensus size: 43
73034933 AAAAATGCCA
*
73034943 CTAAAGATCATGGCCTTTAGCAGCGCTTTTATCACAAACGCCG
1 CTAAAGATCATGACCTTTAGCAGCGCTTTTATCACAAACGCCG
* * * *
73034986 CTAAAGATCATGACCTTTAGCGGCGCTTTTACCACAAGCGCCA
1 CTAAAGATCATGACCTTTAGCAGCGCTTTTATCACAAACGCCG
* * *
73035029 CTAAAGATCACGACCTTTAGCGGCTCTTTTATCACAAACGCCG
1 CTAAAGATCATGACCTTTAGCAGCGCTTTTATCACAAACGCCG
* * * * *
73035072 CTAAA-AGTCATGATCTTCAGCAACGCTTTTGTCACAAACGCTG
1 CTAAAGA-TCATGACCTTTAGCAGCGCTTTTATCACAAACGCCG
*
73035115 CTAAAGAACATGACCTTTAGC-GACGCTTTTTATCACAAACGC
1 CTAAAGATCATGACCTTTAGCAG-CGC-TTTTATCACAAACGC
73035157 TAGCGACGCT
Statistics
Matches: 144, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
42 1 0.01
43 128 0.89
44 15 0.10
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
CTAAAGATCATGACCTTTAGCAGCGCTTTTATCACAAACGCCG
Found at i:73036628 original size:28 final size:28
Alignment explanation
Indices: 73036588--73036643 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
73036578 TCTGTAAGAT
*
73036588 GCATGTCTAACAAGCTGAAAAGGACAAG
1 GCATGTCTAACAAGCTAAAAAGGACAAG
73036616 GCATGTCTAACAAGCTAAAAAGGACAAG
1 GCATGTCTAACAAGCTAAAAAGGACAAG
73036644 TATGACAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (28 bp):
GCATGTCTAACAAGCTAAAAAGGACAAG
Found at i:73039737 original size:67 final size:67
Alignment explanation
Indices: 73039628--73039757 Score: 188
Period size: 67 Copynumber: 1.9 Consensus size: 67
73039618 GAAAACGCCG
* * *
73039628 CTAAAGACCCAATCATTAGCAACGCTTTCTAAAAAACGCCGCTAAAACCATGAGTATTAGCGGAG
1 CTAAAGACCCAATCATTAGCAACGCTTTCTAAAAAACACCGCTAAAACCATAAGCATTAGCGGAG
73039693 CT
66 CT
* * * * *
73039695 CTAAAGACCCGATCATTAGCGACGCTTTTTAAAAAATACCGCTAAAACCCTAAGCATTAGCGG
1 CTAAAGACCCAATCATTAGCAACGCTTTCTAAAAAACACCGCTAAAACCATAAGCATTAGCGG
73039758 CGCCTATTCA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (67 bp):
CTAAAGACCCAATCATTAGCAACGCTTTCTAAAAAACACCGCTAAAACCATAAGCATTAGCGGAG
CT
Found at i:73039753 original size:41 final size:41
Alignment explanation
Indices: 73039695--73039863 Score: 187
Period size: 41 Copynumber: 4.1 Consensus size: 41
73039685 TAGCGGAGCT
* * *
73039695 CTAAAGACCC-GATCATTAGCGACGCTTTTTAAAAAATACCG
1 CTAAA-ACCCTGAGCATTAGCGGCGCTTTTTAAAAAACACCG
* * * *
73039736 CTAAAACCCTAAGCATTAGCGGCGCCTATTCAAAAACACCG
1 CTAAAACCCTGAGCATTAGCGGCGCTTTTTAAAAAACACCG
* * ** *
73039777 CTAAATCCCTGAGCATTAGCGGTGCTTTACAAAAAACGCCG
1 CTAAAACCCTGAGCATTAGCGGCGCTTTTTAAAAAACACCG
* * *
73039818 CTAAAACCCTGAGCATTAGCGGTGCTTTTTAAAAAACGCCA
1 CTAAAACCCTGAGCATTAGCGGCGCTTTTTAAAAAACACCG
73039859 CTAAA
1 CTAAA
73039864 GCCCCAAAAA
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
40 4 0.04
41 103 0.96
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.22
Consensus pattern (41 bp):
CTAAAACCCTGAGCATTAGCGGCGCTTTTTAAAAAACACCG
Found at i:73042964 original size:58 final size:57
Alignment explanation
Indices: 73042864--73043006 Score: 198
Period size: 58 Copynumber: 2.5 Consensus size: 57
73042854 ATACAATATG
* * * * *
73042864 CAGTAACAGTCTGGGCCTGAGCCCTATTCAGTAGTACAGTGTGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAG-ACAGTGTGGGCCTTAGCCCAATA
*
73042922 TAGTAACAGTGTGTGGGCCTTAGCCCAATACAGTA-ACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACA--GTGTGGGCCTTAGCCCAATACAGTAGACAGTGTGGGCCTTAGCCCAATA
73042980 CAGTAACAGTGTGGGCCTTAGCCCAAT
1 CAGTAACAGTGTGGGCCTTAGCCCAAT
73043007 GCAGCAATGC
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
56 19 0.25
58 36 0.47
60 21 0.28
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (57 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATACAGTAGACAGTGTGGGCCTTAGCCCAATA
Found at i:73042972 original size:28 final size:28
Alignment explanation
Indices: 73042864--73043006 Score: 196
Period size: 28 Copynumber: 5.0 Consensus size: 28
73042854 ATACAATATG
* * * *
73042864 CAGTAACAGTCTGGGCCTGAGCCCTATT
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
73042892 CAGTAGTACAGTGTGGGCCTTAGCCCATTA
1 CAGTA--ACAGTGTGGGCCTTAGCCCAATA
*
73042922 TAGTAACAGTGTGTGGGCCTTAGCCCAATA
1 CAGTAACA--GTGTGGGCCTTAGCCCAATA
73042952 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
73042980 CAGTAACAGTGTGGGCCTTAGCCCAAT
1 CAGTAACAGTGTGGGCCTTAGCCCAAT
73043007 GCAGCAATGC
Statistics
Matches: 103, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
28 55 0.53
30 48 0.47
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:73043134 original size:26 final size:26
Alignment explanation
Indices: 73043105--73043184 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
73043095 ACACACCAAT
*
73043105 ATCGCAGCAAAGTTGCCAGTAATAGC
1 ATCGCAGCAAAGCTGCCAGTAATAGC
* * *
73043131 ATCGCAGTAGAGCTGCCAGT-ATCAGT
1 ATCGCAGCAAAGCTGCCAGTAAT-AGC
* *
73043157 ATCGCAGCAAAGCTACCAGTAACAGC
1 ATCGCAGCAAAGCTGCCAGTAATAGC
73043183 AT
1 AT
73043185 ATGTTGCAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
25 2 0.05
26 40 0.93
27 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.19
Consensus pattern (26 bp):
ATCGCAGCAAAGCTGCCAGTAATAGC
Found at i:73043792 original size:27 final size:27
Alignment explanation
Indices: 73043418--73043803 Score: 432
Period size: 27 Copynumber: 14.3 Consensus size: 27
73043408 GGGTATAACA
73043418 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
73043445 GTCATTTTACCTTATAGAGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
73043472 GTCATTCTACCCTGTGGGGGTATTTAG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * **
73043499 GCCATTTTACCCTATGAGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
73043526 GTCATTCTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
73043553 ATCATTTTACCCTATAGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGGTATTTCG
* *
73043581 GTCATTCTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
73043608 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
73043635 ATCATTTTACCCTATGGGGCTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
73043662 ATTATTTTACCCTATGGGGATATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
73043689 ATCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *** *
73043716 GTCATTCTACCCTATAAAGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
73043743 GTCATTTTACCCTGTGGGAGTAATTT-G
1 GTCATTTTACCCTATGGGGGT-ATTTCG
* *
73043770 GTCATTTTACCCTGTGGGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
73043797 GCCATTT
1 GTCATTT
73043804 ATTGACCTCT
Statistics
Matches: 303, Mismatches: 53, Indels: 6
0.84 0.15 0.02
Matches are distributed among these distances:
26 3 0.01
27 273 0.90
28 27 0.09
ACGTcount: A:0.20, C:0.19, G:0.21, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:73044483 original size:21 final size:21
Alignment explanation
Indices: 73044441--73044483 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
73044431 CAACAACAAC
*
73044441 CTCCCCAAATCCTAATATTCT
1 CTCCCCAAATCCTAATACTCT
*
73044462 CTCCTCAAATCTCTAAT-CTCT
1 CTCCCCAAATC-CTAATACTCT
73044483 C
1 C
73044484 CAAATATCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.26, C:0.40, G:0.00, T:0.35
Consensus pattern (21 bp):
CTCCCCAAATCCTAATACTCT
Found at i:73046185 original size:34 final size:35
Alignment explanation
Indices: 73046117--73046189 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
73046107 TAGCCTTCGG
* * * * *
73046117 TTCTTTCTTCTTTTCTTTGTGGTCGAATATTGCCT
1 TTCTTTATTCTTCTCTCTGTGGCCGAATACTGCCT
73046152 TTCTTTATTCTTCTCTCT-TGGCCGAATACTGCCT
1 TTCTTTATTCTTCTCTCTGTGGCCGAATACTGCCT
73046186 TTCT
1 TTCT
73046190 CTCCCTTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.10, C:0.25, G:0.12, T:0.53
Consensus pattern (35 bp):
TTCTTTATTCTTCTCTCTGTGGCCGAATACTGCCT
Found at i:73046878 original size:27 final size:27
Alignment explanation
Indices: 73046827--73046992 Score: 170
Period size: 27 Copynumber: 6.1 Consensus size: 27
73046817 GTAATGGGCA
* *
73046827 TAAAATGACCGAATTACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTTGAAGGG
* * *
73046854 TAAAATGACTGAAATGCCTTTGAAGGG
1 TAAAATGACCGAAATACCCTTGAAGGG
* ** *
73046881 TAAAATAAGGGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTTGAAGGG
*
73046908 TAAAATGACCGAAATACCCCTGAAGGG
1 TAAAATGACCGAAATACCCTTGAAGGG
* * * *
73046935 TAAAATTACCAAAATACCCTCGAAGAG
1 TAAAATGACCGAAATACCCTTGAAGGG
* * * *
73046962 TAAACTGACCAAAATACCCTCGAAAGG
1 TAAAATGACCGAAATACCCTTGAAGGG
73046989 TAAA
1 TAAA
73046993 GAGGAGAGTT
Statistics
Matches: 114, Mismatches: 25, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.18
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTTGAAGGG
Found at i:73046965 original size:81 final size:81
Alignment explanation
Indices: 73046827--73046992 Score: 190
Period size: 81 Copynumber: 2.0 Consensus size: 81
73046817 GTAATGGGCA
* ** * * * * ***
73046827 TAAAATGACCGAATTACCCTCGAAGGGTAAAATGACTGAAATGCCTTTGAAGGGTAAAATAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTCGAAGAGTAAAATAACCA
*
73046892 AAATACCCTCGAAGGG
66 AAATACCCTCGAAAGG
* * *
73046908 TAAAATGACCGAAATACCC-CTGAAGGGTAAAATTACCAAAATACCCTCGAAGAGTAAACTGACC
1 TAAAATGACCGAAATACCCTC-GAAGGGTAAAATGACCAAAATACCCTCGAAGAGTAAAATAACC
73046972 AAAATACCCTCGAAAGG
65 AAAATACCCTCGAAAGG
73046989 TAAA
1 TAAA
73046993 GAGGAGAGTT
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 69 0.99
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.18
Consensus pattern (81 bp):
TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCAAAATACCCTCGAAGAGTAAAATAACCA
AAATACCCTCGAAAGG
Found at i:73047373 original size:34 final size:35
Alignment explanation
Indices: 73047305--73047377 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
73047295 TAGCCTTCGG
* * * * *
73047305 TTCTTTCTTCTTTTCTTTGTGGTCGAATATTGCCT
1 TTCTTTATTCTTCTCTCTGTGGCCGAATACTGCCT
73047340 TTCTTTATTCTTCTCTCT-TGGCCGAATACTGCCT
1 TTCTTTATTCTTCTCTCTGTGGCCGAATACTGCCT
73047374 TTCT
1 TTCT
73047378 CTCCCTTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.10, C:0.25, G:0.12, T:0.53
Consensus pattern (35 bp):
TTCTTTATTCTTCTCTCTGTGGCCGAATACTGCCT
Found at i:73048214 original size:27 final size:27
Alignment explanation
Indices: 73048015--73048212 Score: 227
Period size: 27 Copynumber: 7.3 Consensus size: 27
73048005 GTAATGGGCA
*
73048015 TAAAATGACCGAATTACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * * *
73048042 TAAAATGACTGAAATGCCTTTGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* **
73048069 TAAAATAAGGGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
73048096 TAAAATGACCGAAATACCC-CTGAAGGG
1 TAAAATGACCGAAATACCCTC-GAAGGG
* * *
73048123 TAAAATTACCAAAATACCCTCGAAGAG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
73048150 TAAACTGACCAAAATACCCTCGAAAGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
73048177 TAAAATGACTGAAATACCCTTGATGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
73048204 TAAAATGAC
1 TAAAATGAC
73048213 TGTTATACCC
Statistics
Matches: 142, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 140 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:73048609 original size:28 final size:28
Alignment explanation
Indices: 73048569--73048648 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 28
73048559 ACTGCATTGT
73048569 ACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* *
73048597 ACTGTTACTGTATTGGGCTAATGCCTAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* * * *
73048625 ACTGTTGCTATATAGGGCTCAGGC
1 ACTGTTACTGTATTGGGCTAAGGC
73048649 TTAGACTGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:73060474 original size:34 final size:35
Alignment explanation
Indices: 73060403--73060485 Score: 87
Period size: 35 Copynumber: 2.4 Consensus size: 35
73060393 TAGCCTTTGG
* * *
73060403 TTCTTTCCTCTTTTCTTTGTGGCCGAACATTGCCT
1 TTCTTTCCTCTTCTCTCTGTGGCCGAACACTGCCT
* * *
73060438 TTCTTTCTTCTTCTCTCT-TGGCCGAATACTGTCT
1 TTCTTTCCTCTTCTCTCTGTGGCCGAACACTGCCT
*
73060472 TTCTCTCCCTCTTC
1 TTCT-TTCCTCTTC
73060486 ATCTATTCCA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
34 17 0.44
35 22 0.56
ACGTcount: A:0.07, C:0.33, G:0.11, T:0.49
Consensus pattern (35 bp):
TTCTTTCCTCTTCTCTCTGTGGCCGAACACTGCCT
Found at i:73061150 original size:27 final size:27
Alignment explanation
Indices: 73061109--73061361 Score: 291
Period size: 27 Copynumber: 9.4 Consensus size: 27
73061099 GTAATGGGCC
* *
73061109 TAAAATGACCAAAATACCCTTGAAGGG
1 TAAAATGACTAAAATACCCTCGAAGGG
*
73061136 TAAAATGACTGAAATACCCTCGAAGGG
1 TAAAATGACTAAAATACCCTCGAAGGG
*
73061163 TAAAATGACTAAAATACCCCCGAAGGG
1 TAAAATGACTAAAATACCCTCGAAGGG
*
73061190 TAAAATGACCAAAATACCCTCGAAGGG
1 TAAAATGACTAAAATACCCTCGAAGGG
*
73061217 TAAAATGACTAAAATGCCC-CAGAAAGGG
1 TAAAATGACTAAAATACCCTC-G-AAGGG
* * * *
73061245 TAAAATGA-TCGAAATACCCCCAAAGGA
1 TAAAATGACT-AAAATACCCTCGAAGGG
*
73061272 TAAAATTACTAAAATACCCTCGAAGGG
1 TAAAATGACTAAAATACCCTCGAAGGG
**
73061299 -AAAACTGA-TCGAATACCCTCGAAGGG
1 TAAAA-TGACTAAAATACCCTCGAAGGG
* *
73061325 TAAAATGA-TCAAAATACCCCCGAAGAG
1 TAAAATGACT-AAAATACCCTCGAAGGG
73061352 TAAAATGACT
1 TAAAATGACT
73061362 GTTATACCCC
Statistics
Matches: 192, Mismatches: 25, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
26 25 0.13
27 144 0.75
28 22 0.11
29 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.17
Consensus pattern (27 bp):
TAAAATGACTAAAATACCCTCGAAGGG
Found at i:73073657 original size:670 final size:670
Alignment explanation
Indices: 73072371--73078411 Score: 12064
Period size: 670 Copynumber: 9.0 Consensus size: 670
73072361 AACAAAAAGG
73072371 ATATGTCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGT
1 ATATG-CCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGT
73072436 CTTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAA
65 CTTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAA
73072501 TCAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTAC
130 TCAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTAC
73072566 TAACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTC
195 TAACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTC
73072631 ATGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAA
260 ATGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAA
73072696 TTACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGC
325 TTACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGC
73072761 CAAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATT
390 CAAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATT
73072826 CTATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTA
455 CTATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTA
73072891 CATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAA
520 CATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAA
73072956 ATCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTAC
585 ATCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTAC
73073021 TAGCACTAAAGCCAATTGCTT
650 TAGCACTAAAGCCAATTGCTT
73073042 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
1 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
73073107 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
66 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
73073172 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
131 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
73073237 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
196 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
73073302 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
261 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
73073367 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
326 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
73073432 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
391 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
73073497 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
456 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
73073562 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
521 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
73073627 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
586 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
73073692 AGCACTAAAGCCAATTGCTT
651 AGCACTAAAGCCAATTGCTT
73073712 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
1 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
73073777 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
66 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
73073842 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
131 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
73073907 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
196 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
73073972 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
261 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
73074037 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
326 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
73074102 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
391 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
73074167 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
456 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
73074232 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
521 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
73074297 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
586 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
73074362 AGCACTAAAGCCAATTGCTT
651 AGCACTAAAGCCAATTGCTT
73074382 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
1 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
73074447 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
66 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
73074512 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
131 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
73074577 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
196 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
73074642 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
261 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
73074707 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
326 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
73074772 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
391 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
73074837 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
456 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
73074902 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
521 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
73074967 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
586 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
73075032 AGCACTAAAGCCAATTGCTT
651 AGCACTAAAGCCAATTGCTT
73075052 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
1 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
73075117 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
66 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
73075182 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
131 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
73075247 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
196 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
73075312 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
261 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
73075377 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
326 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
73075442 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
391 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
73075507 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
456 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
73075572 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
521 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
73075637 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
586 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
73075702 AGCACTAAAGCCAATTGCTT
651 AGCACTAAAGCCAATTGCTT
73075722 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
1 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
73075787 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
66 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
73075852 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
131 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
73075917 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
196 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
73075982 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
261 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
73076047 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
326 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
73076112 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
391 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
73076177 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
456 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
73076242 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
521 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
73076307 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
586 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
73076372 AGCACTAAAGCCAATTGCTT
651 AGCACTAAAGCCAATTGCTT
73076392 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
1 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
73076457 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
66 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
73076522 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
131 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
73076587 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
196 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
73076652 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
261 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
73076717 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
326 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
73076782 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
391 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
73076847 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
456 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
73076912 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
521 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
73076977 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
586 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
73077042 AGCACTAAAGCCAATTGCTT
651 AGCACTAAAGCCAATTGCTT
73077062 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
1 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
73077127 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
66 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
73077192 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
131 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
73077257 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
196 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
73077322 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
261 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
73077387 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
326 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
73077452 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
391 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
73077517 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
456 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
73077582 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
521 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
73077647 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
586 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
73077712 AGCACTAAAGCCAATTGCTT
651 AGCACTAAAGCCAATTGCTT
73077732 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
1 ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
73077797 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
66 TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
73077862 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
131 CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
73077927 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
196 AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
73077992 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
261 TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
73078057 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
326 TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
73078122 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
391 AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
*
73078187 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTTAAATATAAACTATTTTAC
456 TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
73078252 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
521 ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
73078317 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
586 TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
73078382 AGCACTAAAGCCAATTGCTT
651 AGCACTAAAGCCAATTGCTT
73078402 ATATGCCCAA
1 ATATGCCCAA
73078412 GACCTAAATC
Statistics
Matches: 5369, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
670 5364 1.00
671 5 0.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (670 bp):
ATATGCCCAATATATCACTTGGGGTGATGGATTCTCTCTAGACCAGTCCATCATTTTCGTATGTC
TTTATGTCATACCCAAAACATCTTACCTTAAGCATCTATTTACGTAGGCTCATTATGTGATGAAT
CAAAGTATGACACTCAGCATACAAGATCAGTTTGTGTAACAAGTTTATGGATTATTTGCACTACT
AACTCATAAGAGTATTTTCATAGGCACTTGAGTGAAATAGCAAATGGAATTCTCATAAAGGGTCA
TGTTCAGTGTATTTGTTCTTGTAACAAGCACCACATATTATCCTCAAGTATCTCATACTTCAAAT
TACGATATTAGTCATGTGCTAACTATTGAGAATTATTCATGTCTTGTCTTAATAATATGATGGCC
AAGAACAGTTTAGAAATCACAACTTTGATGGATAAAGATCTCATAATTGTAACTCATTATAATTC
TATTTCAATGCCTAATGTGTTGCATGGGCTTTATCTACATATGTGTGAAATATAAACTATTTTAC
ATATGGACAAAGAAATATCTAAATATATTATTTTAAAAAATTATAATAAAGTCAACACAATTAAA
TCCTTCTTAGTGCTCACAAGCAAATCATTATTTGCTTCTAGGGCTTACTCTAATAATCTCTTACT
AGCACTAAAGCCAATTGCTT
Found at i:73080260 original size:9 final size:9
Alignment explanation
Indices: 73080246--73080271 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
73080236 CCGTACACCT
73080246 GCAACAAAC
1 GCAACAAAC
73080255 GCAACAAAC
1 GCAACAAAC
73080264 GCAACAAA
1 GCAACAAA
73080272 GGCAGCAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.31, G:0.12, T:0.00
Consensus pattern (9 bp):
GCAACAAAC
Found at i:73080534 original size:9 final size:9
Alignment explanation
Indices: 73080520--73080544 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
73080510 TCGTTTTTCC
73080520 TTTCTTTTT
1 TTTCTTTTT
73080529 TTTCTTTTT
1 TTTCTTTTT
73080538 TTTCTTT
1 TTTCTTT
73080545 CAATATACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:73093917 original size:44 final size:44
Alignment explanation
Indices: 73093846--73093966 Score: 131
Period size: 44 Copynumber: 2.8 Consensus size: 44
73093836 AAGATGGCGA
* * *
73093846 ATCTCATCTCTCT-AAGGTTGCAGTGGAGTAGATTGAAGCTGATA-
1 ATCTCATCTCCCTGAA-GTTGCAGTGGAGTAGATTAAAG-TAATAG
* *
73093890 ATC-CTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGTAATAG
1 ATCTC-ATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTAATAG
* *
73093934 ATCTCATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 ATCTCATCTCCCTGAAGTTGCAGTGGAGTAGAT
73093967 CACATCAGAA
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.08
44 56 0.88
45 3 0.05
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (44 bp):
ATCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGTAATAG
Found at i:73094587 original size:9 final size:9
Alignment explanation
Indices: 73094573--73094598 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
73094563 CCGTACACCT
73094573 GCAACAAAC
1 GCAACAAAC
73094582 GCAACAAAC
1 GCAACAAAC
73094591 GCAACAAA
1 GCAACAAA
73094599 GGCAGCAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.31, G:0.12, T:0.00
Consensus pattern (9 bp):
GCAACAAAC
Found at i:73095663 original size:3 final size:3
Alignment explanation
Indices: 73095655--73095695 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
73095645 TATAATCATA
73095655 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
73095696 CTTTTTAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:73107847 original size:50 final size:50
Alignment explanation
Indices: 73107605--73107847 Score: 315
Period size: 50 Copynumber: 4.9 Consensus size: 50
73107595 TTTTTTGTAT
* * * ** * *
73107605 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTCGG
* * ** * * *
73107655 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTCGG
* * *
73107705 TGCCAACGCCATCTCCCAGACATGGTCTTACATGGGACCTCTTATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTCGG
*
73107755 TGCCAACGCCATGTCCCAGACATGGTCTTACATGATACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTCGG
*
73107805 TGCCAACGCCATGCCCCAGACATGGTCTTACATGAGACCTCTT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTT
73107848 TACCCAAATG
Statistics
Matches: 169, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 169 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTTATCTCGG
Found at i:73115683 original size:50 final size:50
Alignment explanation
Indices: 73115618--73116201 Score: 705
Period size: 50 Copynumber: 11.8 Consensus size: 50
73115608 ATTATAAGAT
*
73115618 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* * * *
73115668 GTCCCACGTAAGACCATGTCTTGAACATGGCGTTGGCACCGAGATAAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* *
73115718 GTCCCATATAAGACCATGTCTGGGACATGGTC-TTGGCACCAAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGG-CGTTGGCACCGAGATGAGAG
*
73115768 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* * * *
73115818 GTCCCACGTAAGACCATGTCTTGAACATGGCGTTGGCACCGAGATAAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* *
73115868 GTCCCATATAAGACCATGTCTGGGACATGGTC-TTGGCACCAAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGG-CGTTGGCACCGAGATGAGAG
73115918 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* * ** * *
73115968 GTCCTATG---GACCATGTTTGATACATGGCGTTGACACCGAGATGAAAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* *
73116015 GACCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATTAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
** * * * * * *
73116065 GTCCCCCGTAAGACCATGTTTGGGACATGACATGGGCACCGATATGAGAA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
* ** * * * * * *
73116115 CTCCCATGTAAGACCATACCTGGGATATGGCATTGGCA--GTACAGGACAC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGATGAGAG
* * * *
73116164 ATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
73116202 TGTTATATTC
Statistics
Matches: 457, Mismatches: 69, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
47 40 0.09
48 1 0.00
49 38 0.08
50 376 0.82
51 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAG
Found at i:73115797 original size:150 final size:150
Alignment explanation
Indices: 73115618--73116131 Score: 788
Period size: 150 Copynumber: 3.4 Consensus size: 150
73115608 ATTATAAGAT
73115618 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCACGTAAGACC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCACGTAAGACC
73115683 ATGTCTTGAACATGGCGTTGGCACCGAGATAAGAGGTCCCATATAAGACCATGTCTGGGACATGG
66 ATGTCTTGAACATGGCGTTGGCACCGAGATAAGAGGTCCCATATAAGACCATGTCTGGGACATGG
73115748 TCTTGGCACCAAGATGAGAG
131 TCTTGGCACCAAGATGAGAG
73115768 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCACGTAAGACC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCACGTAAGACC
73115833 ATGTCTTGAACATGGCGTTGGCACCGAGATAAGAGGTCCCATATAAGACCATGTCTGGGACATGG
66 ATGTCTTGAACATGGCGTTGGCACCGAGATAAGAGGTCCCATATAAGACCATGTCTGGGACATGG
73115898 TCTTGGCACCAAGATGAGAG
131 TCTTGGCACCAAGATGAGAG
* * *
73115918 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCTA--T-GGACC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCACGTAAGACC
* * *
73115980 ATGT-TTGATACATGGCGTTGACACCGAGATGAA-AGGACCCATGTAAGACCATGTCTGGGACAT
66 ATGTCTTGA-ACATGGCGTTGGCACCGAGAT-AAGAGGTCCCATATAAGACCATGTCTGGGACAT
* *
73116043 GG-CGTTGGCACCGAGATTAGAG
129 GGTC-TTGGCACCAAGATGAGAG
** * * * * * * ** *
73116065 GTCCCCCGTAAGACCATGTTTGGGACATGACATGGGCACCGATATGAGAACTCCCATGTAAGACC
1 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCACGTAAGACC
73116130 AT
66 AT
73116132 ACCTGGGATA
Statistics
Matches: 339, Mismatches: 19, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
146 5 0.01
147 120 0.35
148 3 0.01
149 1 0.00
150 210 0.62
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (150 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCCCACGTAAGACC
ATGTCTTGAACATGGCGTTGGCACCGAGATAAGAGGTCCCATATAAGACCATGTCTGGGACATGG
TCTTGGCACCAAGATGAGAG
Found at i:73122012 original size:20 final size:20
Alignment explanation
Indices: 73121987--73122045 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
73121977 TTGTACAAGA
73121987 TTTGCACTTTGGTGCCCCTG
1 TTTGCACTTTGGTGCCCCTG
**
73122007 TTTGCACATTT-GTGAACCTG
1 TTTGCAC-TTTGGTGCCCCTG
*
73122027 TCTGCACTTTGGTGCCCCT
1 TTTGCACTTTGGTGCCCCT
73122046 ATTATTCATC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
19 3 0.09
20 26 0.81
21 3 0.09
ACGTcount: A:0.10, C:0.29, G:0.22, T:0.39
Consensus pattern (20 bp):
TTTGCACTTTGGTGCCCCTG
Found at i:73144586 original size:774 final size:773
Alignment explanation
Indices: 73143098--73144644 Score: 3085
Period size: 774 Copynumber: 2.0 Consensus size: 773
73143088 ACAAAAATGG
73143098 GCATGCATAGATAAAAATAACTAAAGTTTTAATGAAGGGCATTTTAGTCATTTGGCAATAAAAAG
1 GCATGCATAGATAAAAATAACTAAAGTTTTAATGAAGGGCATTTTAGTCATTTGGCAATAAAAAG
73143163 AATTAAAAGGGAAAAAGATAGAAAAATTTTCTCATCTTCTTCCATAAGGGCCGAATTTCAAGGGA
66 AATTAAAAGGGAAAAAGATAGAAAAATTTTCTCATCTTCTTCCATAAGGGCCGAATTTCAAGGGA
73143228 CACCATAGCTAGTGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCTCGTTTTTAA
131 CACCATAGCTAGTGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCTCGTTTTTAA
73143293 TTTTTTTCACGTTTTTGAAGTCCTTGTAGCTAGGTTTAGCTTATTCTACCATTAATTCATGTTAG
196 TTTTTTTCACGTTTTTGAAGTCCTTGTAGCTAGGTTTAGCTTATTCTACCATTAATTCATGTTAG
73143358 GTTTCATATTTGGAAAAATACCCATGATGTTTTATGGTAGTATATGAAGCTTGAAATTATGTTAA
261 GTTTCATATTTGGAAAAATACCCATGATGTTTTATGGTAGTATATGAAGCTTGAAATTATGTTAA
73143423 ACAACTTTTGCTAGGTGATTTTAAGTGAAAACGAGTAAAACGACATAATCGGTAAAAATACCTAA
326 ACAACTTTTGCTAGGTGATTTTAAGTGAAAACGAGTAAAACGACATAATCGGTAAAAATACCTAA
73143488 TGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAAGGGAAAGATGTTCAGCATG
391 TGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAAGGGAAAGATGTTCAGCATG
73143553 TCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTGGGGCAAAAGTGCAAATATG
456 TCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTGGGGCAAAAGTGCAAATATG
73143618 CAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAAGGACTGTTTTGATGAAGTG
521 CAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAAGGACTGTTTTGATGAAGTG
73143683 AGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAAATCCAGAGTTAGACCGGGG
586 AGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAAATCCAGAGTTAGACCGGGG
73143748 AAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTGTACCATGGTAAGTTTACGG
651 AAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTGTACCATGGTAAGTTTACGG
73143813 TAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTTCCAGCAATTATT
716 TAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTTCCAGCAATTATT
73143871 NGCATGCATAGATAAAAATAACTAAAGTTTTAATGAAGGGCATTTTAGTCATTTGGCAATAAAAA
1 -GCATGCATAGATAAAAATAACTAAAGTTTTAATGAAGGGCATTTTAGTCATTTGGCAATAAAAA
73143936 GAATTAAAAGGGAAAAAGATAGAAAAATTTTCTCATCTTCTTCCATAAGGGCCGAATTTCAAGGG
65 GAATTAAAAGGGAAAAAGATAGAAAAATTTTCTCATCTTCTTCCATAAGGGCCGAATTTCAAGGG
73144001 ACACCATAGCTAGTGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCTCGTTTTTA
130 ACACCATAGCTAGTGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCTCGTTTTTA
73144066 ATTTTTTTCACGTTTTTGAAGTCCTTGTAGCTAGGTTTAGCTTATTCTACCATTAATTCATGTTA
195 ATTTTTTTCACGTTTTTGAAGTCCTTGTAGCTAGGTTTAGCTTATTCTACCATTAATTCATGTTA
73144131 GGTTTCATATTTGGAAAAATACCCATGATGTTTTATGGTAGTATATGAAGCTTGAAATTATGTTA
260 GGTTTCATATTTGGAAAAATACCCATGATGTTTTATGGTAGTATATGAAGCTTGAAATTATGTTA
73144196 AACAACTTTTGCTAGGTGATTTTAAGTGAAAACGAGTAAAACGACATAATCGGTAAAAATACCTA
325 AACAACTTTTGCTAGGTGATTTTAAGTGAAAACGAGTAAAACGACATAATCGGTAAAAATACCTA
73144261 ATGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAAGGGAAAGATGTTCAGCAT
390 ATGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAAGGGAAAGATGTTCAGCAT
73144326 GTCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTGGGGCAAAAGTGCAAATAT
455 GTCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTGGGGCAAAAGTGCAAATAT
73144391 GCAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAAGGACTGTTTTGATGAAGT
520 GCAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAAGGACTGTTTTGATGAAGT
73144456 GAGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAAATCCAGAGTTAGACCGGG
585 GAGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAAATCCAGAGTTAGACCGGG
73144521 GAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTGTACCATGGTAAGTTTACG
650 GAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTGTACCATGGTAAGTTTACG
73144586 GTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTTCCAGCAATTATT
715 GTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTTCCAGCAATTATT
73144645 TACTTATTTC
Statistics
Matches: 773, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
774 773 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (773 bp):
GCATGCATAGATAAAAATAACTAAAGTTTTAATGAAGGGCATTTTAGTCATTTGGCAATAAAAAG
AATTAAAAGGGAAAAAGATAGAAAAATTTTCTCATCTTCTTCCATAAGGGCCGAATTTCAAGGGA
CACCATAGCTAGTGTTTCTTCACTTTCTCAAGCTCATAGTAAGTGCATCCAAGCCTCGTTTTTAA
TTTTTTTCACGTTTTTGAAGTCCTTGTAGCTAGGTTTAGCTTATTCTACCATTAATTCATGTTAG
GTTTCATATTTGGAAAAATACCCATGATGTTTTATGGTAGTATATGAAGCTTGAAATTATGTTAA
ACAACTTTTGCTAGGTGATTTTAAGTGAAAACGAGTAAAACGACATAATCGGTAAAAATACCTAA
TGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAAGGGAAAGATGTTCAGCATG
TCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTGGGGCAAAAGTGCAAATATG
CAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAAGGACTGTTTTGATGAAGTG
AGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAAATCCAGAGTTAGACCGGGG
AAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTGTACCATGGTAAGTTTACGG
TAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTTCCAGCAATTATT
Found at i:73144837 original size:56 final size:50
Alignment explanation
Indices: 73144771--73145012 Score: 184
Period size: 50 Copynumber: 4.7 Consensus size: 50
73144761 AGGAATGAGA
* **
73144771 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G--ATGAGAGG
* *
73144827 TCCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * **
73144877 TCCCCCGTAAGACCATGTCTGGGACATGCCA-TGGACACCGATATTAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG-CACCGAGATGAGAGG
** * * * * * **
73144927 TCCCATATAAGACCATATCTGGGAAATGGCATTGGCA--GTACAGGAAACA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
* * *
73144976 TTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
73145013 TGTTATTATC
Statistics
Matches: 153, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 73 0.48
51 3 0.02
52 1 0.01
53 3 0.02
56 33 0.22
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Done.