Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 237 of 313
Found at i:73145635 original size:56 final size:50
Alignment explanation
Indices: 73145569--73145810 Score: 184
Period size: 50 Copynumber: 4.7 Consensus size: 50
73145559 AGGAATGAGA
* **
73145569 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G--ATGAGAGG
* *
73145625 TCCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * **
73145675 TCCCCCGTAAGACCATGTCTGGGACATGCCA-TGGACACCGATATTAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG-CACCGAGATGAGAGG
** * * * * * **
73145725 TCCCATATAAGACCATATCTGGGAAATGGCATTGGCA--GTACAGGAAACA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
* * *
73145774 TTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
73145811 TGTTATTATC
Statistics
Matches: 153, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 73 0.48
51 3 0.02
52 1 0.01
53 3 0.02
56 33 0.22
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:73145779 original size:798 final size:798
Alignment explanation
Indices: 73144243--73145838 Score: 3192
Period size: 798 Copynumber: 2.0 Consensus size: 798
73144233 AAAACGACAT
73144243 AATCGGTAAAAATACCTAATGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAA
1 AATCGGTAAAAATACCTAATGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAA
73144308 GGGAAAGATGTTCAGCATGTCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTG
66 GGGAAAGATGTTCAGCATGTCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTG
73144373 GGGCAAAAGTGCAAATATGCAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAA
131 GGGCAAAAGTGCAAATATGCAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAA
73144438 GGACTGTTTTGATGAAGTGAGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAA
196 GGACTGTTTTGATGAAGTGAGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAA
73144503 ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
261 ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
73144568 TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
326 TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
73144633 CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
391 CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
73144698 TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
456 TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
73144763 GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
521 GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
73144828 CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
586 CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
73144893 GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
651 GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
73144958 TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
716 TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
73145023 AGACAGGGAACCAGAGAG
781 AGACAGGGAACCAGAGAG
73145041 AATCGGTAAAAATACCTAATGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAA
1 AATCGGTAAAAATACCTAATGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAA
73145106 GGGAAAGATGTTCAGCATGTCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTG
66 GGGAAAGATGTTCAGCATGTCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTG
73145171 GGGCAAAAGTGCAAATATGCAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAA
131 GGGCAAAAGTGCAAATATGCAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAA
73145236 GGACTGTTTTGATGAAGTGAGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAA
196 GGACTGTTTTGATGAAGTGAGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAA
73145301 ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
261 ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
73145366 TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
326 TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
73145431 CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
391 CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
73145496 TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
456 TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
73145561 GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
521 GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
73145626 CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
586 CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
73145691 GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
651 GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
73145756 TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
716 TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
73145821 AGACAGGGAACCAGAGAG
781 AGACAGGGAACCAGAGAG
73145839 TCCTTAGTAT
Statistics
Matches: 798, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
798 798 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (798 bp):
AATCGGTAAAAATACCTAATGTTCATAAGTAAATGCTAGAGTGGGAATTTGATGTCGCCATAGAA
GGGAAAGATGTTCAGCATGTCAGAAAACATAAGAATAAGGGATGAAGTTTAATTGCCGAGCTTTG
GGGCAAAAGTGCAAATATGCAAAGTTTTAGGGGCAAAATCATAATTTTTCCAAAGTTTGAGTCAA
GGACTGTTTTGATGAAGTGAGTATTAAAAAAGCAAAATTTGTTATTATAGACCAAGAGGAACGAA
ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
AGACAGGGAACCAGAGAG
Found at i:73146346 original size:56 final size:50
Alignment explanation
Indices: 73146280--73146521 Score: 184
Period size: 50 Copynumber: 4.7 Consensus size: 50
73146270 AGGAATGAGA
* **
73146280 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA-G--ATGAGAGG
* *
73146336 TCCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * **
73146386 TCCCCCGTAAGACCATGTCTGGGACATGCCA-TGGACACCGATATTAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG-CACCGAGATGAGAGG
** * * * * * **
73146436 TCCCATATAAGACCATATCTGGGAAATGGCATTGGCA--GTACAGGAAACA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
* * *
73146485 TTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
73146522 TGTTATTATC
Statistics
Matches: 153, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 73 0.48
51 3 0.02
52 1 0.01
53 3 0.02
56 33 0.22
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:73146663 original size:711 final size:711
Alignment explanation
Indices: 73145301--73146723 Score: 2846
Period size: 711 Copynumber: 2.0 Consensus size: 711
73145291 GAGGAACGAA
73145301 ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
1 ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
73145366 TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
66 TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
73145431 CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
131 CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
73145496 TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
196 TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
73145561 GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
261 GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
73145626 CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
326 CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
73145691 GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
391 GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
73145756 TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
456 TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
73145821 AGACAGGGAACCAGAGAGTCCTTAGTATTCCAAGTGGTTCAACGGGCTAGTAAATAGACTATGTT
521 AGACAGGGAACCAGAGAGTCCTTAGTATTCCAAGTGGTTCAACGGGCTAGTAAATAGACTATGTT
73145886 ACATGAAACTTTAGGTAAAAGCATAATAAATAGATTCAGGTGAGTTATAAGGGTTAAGAATATCT
586 ACATGAAACTTTAGGTAAAAGCATAATAAATAGATTCAGGTGAGTTATAAGGGTTAAGAATATCT
73145951 CAGTTATCAGTTGAGAAAGAAATTTCAACAATGAAGGAGTAAGTTATAATCATGAGTTATT
651 CAGTTATCAGTTGAGAAAGAAATTTCAACAATGAAGGAGTAAGTTATAATCATGAGTTATT
73146012 ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
1 ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
73146077 TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
66 TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
73146142 CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
131 CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
73146207 TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
196 TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
73146272 GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
261 GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
73146337 CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
326 CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
73146402 GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
391 GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
73146467 TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
456 TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
73146532 AGACAGGGAACCAGAGAGTCCTTAGTATTCCAAGTGGTTCAACGGGCTAGTAAATAGACTATGTT
521 AGACAGGGAACCAGAGAGTCCTTAGTATTCCAAGTGGTTCAACGGGCTAGTAAATAGACTATGTT
73146597 ACATGAAACTTTAGGTAAAAGCATAATAAATAGATTCAGGTGAGTTATAAGGGTTAAGAATATCT
586 ACATGAAACTTTAGGTAAAAGCATAATAAATAGATTCAGGTGAGTTATAAGGGTTAAGAATATCT
73146662 CAGTTATCAGTTGAGAAAGAAATTTCAACAATGAAGGAGTAAGTTATAATCATGAGTTATT
651 CAGTTATCAGTTGAGAAAGAAATTTCAACAATGAAGGAGTAAGTTATAATCATGAGTTATT
73146723 A
1 A
73146724 AAGTAAGCAA
Statistics
Matches: 712, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
711 712 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (711 bp):
ATCCAGAGTTAGACCGGGGAAAGAAAAATGTTGAGGACTAAGTTGCTAGATTTGATTGTATTTTG
TACCATGGTAAGTTTACGGTAAATAAATACAATATTTCAATAATTATTATTAATGTTGTTAGTTT
CCAGCAATTATTTACTTATTTCATGAAATTATTTAATGTTGACTCAAGTATGAGATGGTAGAGAA
TCAATGTTAAAAAGTACCGTTGAAACATTAGGAATGTATCGGATACAAATGTCATGACATTAAAG
GAATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGT
CCCACGTAAGACCATTTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGACCAT
GTCTGGGACATGCCATGGACACCGATATTAGAACTCCCATATAAGACCATATCTGGGAAATGGCA
TTGGCAGTACAGGAAACATTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATGTTATTATC
AGACAGGGAACCAGAGAGTCCTTAGTATTCCAAGTGGTTCAACGGGCTAGTAAATAGACTATGTT
ACATGAAACTTTAGGTAAAAGCATAATAAATAGATTCAGGTGAGTTATAAGGGTTAAGAATATCT
CAGTTATCAGTTGAGAAAGAAATTTCAACAATGAAGGAGTAAGTTATAATCATGAGTTATT
Found at i:73146749 original size:20 final size:20
Alignment explanation
Indices: 73146724--73146772 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
73146714 TGAGTTATTA
73146724 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
73146744 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
73146764 AAG-AAGCAA
1 AAGTAAGCAA
73146773 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:73146900 original size:14 final size:14
Alignment explanation
Indices: 73146881--73146908 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73146871 CTTTATTTTC
73146881 CTTCTTTTCTTATA
1 CTTCTTTTCTTATA
73146895 CTTCTTTTCTTATA
1 CTTCTTTTCTTATA
73146909 GTATGGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.00, T:0.64
Consensus pattern (14 bp):
CTTCTTTTCTTATA
Found at i:73151690 original size:49 final size:47
Alignment explanation
Indices: 73151422--73151774 Score: 589
Period size: 47 Copynumber: 7.4 Consensus size: 47
73151412 CCCTTCGGGA
* * * *
73151422 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73151469 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73151516 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73151563 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73151610 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73151657 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73151706 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73151755 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
73151775 GTACATCAAT
Statistics
Matches: 295, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 203 0.69
49 92 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73152725 original size:56 final size:56
Alignment explanation
Indices: 73152639--73152870 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
73152629 TATTAGTTTA
* *
73152639 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
73152695 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
73152751 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
73152807 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
73152863 TTGCCCAT
1 TTGCCCAT
73152871 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:73157666 original size:20 final size:21
Alignment explanation
Indices: 73157643--73157683 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73157633 ATCACTTTAA
*
73157643 TATCAA-ATTAATATAATATT
1 TATCAAGATAAATATAATATT
*
73157663 TATCAAGATAAATATTATATT
1 TATCAAGATAAATATAATATT
73157684 GAATTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (21 bp):
TATCAAGATAAATATAATATT
Found at i:73167694 original size:36 final size:36
Alignment explanation
Indices: 73167644--73167734 Score: 130
Period size: 36 Copynumber: 2.5 Consensus size: 36
73167634 GGAGCCATTA
* *
73167644 GTGTGTTTTTGATGGATTAGCTCGTATGAGCATTTG
1 GTGTGTTTTGGATGGATTAGCTCGTATGAGCATCTG
* *
73167680 GTGTGTTTTGGATGGACTAGCTCTTATGAGCATCTG
1 GTGTGTTTTGGATGGATTAGCTCGTATGAGCATCTG
73167716 GTGTGTTTTGG-TGGGATTA
1 GTGTGTTTTGGAT-GGATTA
73167735 CCGATGTACT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
35 1 0.02
36 48 0.98
ACGTcount: A:0.15, C:0.09, G:0.33, T:0.43
Consensus pattern (36 bp):
GTGTGTTTTGGATGGATTAGCTCGTATGAGCATCTG
Found at i:73172885 original size:22 final size:21
Alignment explanation
Indices: 73172860--73172917 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
73172850 TTAATCCAGC
*
73172860 CCAATACATAATTTTATATTTT
1 CCAATAAATAATTTTA-ATTTT
*
73172882 CCAA-AAATAATATTAATTTT
1 CCAATAAATAATTTTAATTTT
*
73172902 CTAATTAAATAATTTT
1 CCAA-TAAATAATTTT
73172918 CTCATCTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
20 8 0.27
21 9 0.30
22 13 0.43
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (21 bp):
CCAATAAATAATTTTAATTTT
Found at i:73173138 original size:6 final size:6
Alignment explanation
Indices: 73173123--73173177 Score: 83
Period size: 6 Copynumber: 9.0 Consensus size: 6
73173113 CAAAAATGAA
* *
73173123 TCATTT CTCATTC TCATTT TCATTT TCATTT TCATTT TCAATT TCATTT
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT
73173172 TCATTT
1 TCATTT
73173178 CAAGAAAACC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
6 39 0.89
7 5 0.11
ACGTcount: A:0.18, C:0.20, G:0.00, T:0.62
Consensus pattern (6 bp):
TCATTT
Found at i:73173805 original size:6 final size:6
Alignment explanation
Indices: 73173788--73173826 Score: 69
Period size: 6 Copynumber: 6.3 Consensus size: 6
73173778 ACACACCATC
73173788 TTTCAGT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TT
1 TTTCA-T TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TT
73173827 CAAGAAAACC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 27 0.84
7 5 0.16
ACGTcount: A:0.15, C:0.15, G:0.03, T:0.67
Consensus pattern (6 bp):
TTTCAT
Found at i:73182783 original size:56 final size:56
Alignment explanation
Indices: 73182723--73182834 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 56
73182713 ACACATACTG
*
73182723 TCACCACCATATAGTCCTAATTATTATGTTCCTCACTAAGTAACTAATCAGTCCTA
1 TCACCACCATACAGTCCTAATTATTATGTTCCTCACTAAGTAACTAATCAGTCCTA
* * *
73182779 TCACCACCATACAGTCCTAATTATTCTGTTCCTCACTATGTAACTAATCGGTCCTA
1 TCACCACCATACAGTCCTAATTATTATGTTCCTCACTAAGTAACTAATCAGTCCTA
73182835 ATCTAACCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (56 bp):
TCACCACCATACAGTCCTAATTATTATGTTCCTCACTAAGTAACTAATCAGTCCTA
Found at i:73185794 original size:20 final size:20
Alignment explanation
Indices: 73185757--73185805 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
73185747 CATATCATGC
*
73185757 ATTCATTTGTGATCTCATAT
1 ATTCATTTTTGATCTCATAT
* *
73185777 ATTCATTTTTTATTTCATAT
1 ATTCATTTTTGATCTCATAT
73185797 ATTCATTTT
1 ATTCATTTT
73185806 CAACCAGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.12, G:0.04, T:0.59
Consensus pattern (20 bp):
ATTCATTTTTGATCTCATAT
Found at i:73185879 original size:24 final size:24
Alignment explanation
Indices: 73185851--73185897 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
73185841 ATGCAGGATA
* *
73185851 ATAATGCTCATATGAGCTATGAAT
1 ATAATGCTCACACGAGCTATGAAT
73185875 ATAATGCTCACACGAGCTATGAA
1 ATAATGCTCACACGAGCTATGAA
73185898 ATGGGCTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (24 bp):
ATAATGCTCACACGAGCTATGAAT
Found at i:73187555 original size:14 final size:13
Alignment explanation
Indices: 73187531--73187564 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
73187521 AATCACTATT
*
73187531 CATATATAGCTCA
1 CATATAGAGCTCA
73187544 CAATATAGAGCTCA
1 C-ATATAGAGCTCA
73187558 CATATAG
1 CATATAG
73187565 TTTAACACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (13 bp):
CATATAGAGCTCA
Found at i:73189097 original size:27 final size:27
Alignment explanation
Indices: 73189067--73189244 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
73189057 ATATTGAGCC
* * * *
73189067 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
73189094 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73189121 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
73189149 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
73189176 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
73189203 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
73189230 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73189245 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:73189206 original size:82 final size:81
Alignment explanation
Indices: 73189088--73189243 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
73189078 TGCTATATAA
* *
73189088 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
73189153 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
73189170 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
73189234 CACTTAGTGC
65 CACTTAGTGC
73189244 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:73199656 original size:18 final size:18
Alignment explanation
Indices: 73199635--73199672 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
73199625 CATTCAAAAG
73199635 AATATGAAATTTCAATAA
1 AATATGAAATTTCAATAA
*
73199653 AATATGAAATTTTAATAA
1 AATATGAAATTTCAATAA
73199671 AA
1 AA
73199673 AATAGTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (18 bp):
AATATGAAATTTCAATAA
Found at i:73199676 original size:20 final size:20
Alignment explanation
Indices: 73199630--73199676 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
73199620 TTTGTCATTC
73199630 AAAAGAATATGAAATTTCAAT
1 AAAA-AATATGAAATTTCAAT
*
73199651 --AAAATATGAAATTTTAAT
1 AAAAAATATGAAATTTCAAT
73199669 AAAAAATA
1 AAAAAATA
73199677 GTTTAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 15 0.65
19 2 0.09
20 6 0.26
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (20 bp):
AAAAAATATGAAATTTCAAT
Found at i:73199943 original size:26 final size:27
Alignment explanation
Indices: 73199914--73199983 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 27
73199904 ATGATTGCAA
*
73199914 CTCGCCAAGCCCACTGGC-GAC-CTCAG
1 CTCGCCAAGCCCACTAGCAGACACT-AG
* *
73199940 CTCG-CTAGACCCACTAGCATACACTAG
1 CTCGCCAAG-CCCACTAGCAGACACTAG
73199967 CTCGCCAAGCCC-CTAGC
1 CTCGCCAAGCCCACTAGC
73199984 TCCTAGGCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
25 3 0.08
26 17 0.47
27 11 0.31
28 5 0.14
ACGTcount: A:0.23, C:0.44, G:0.19, T:0.14
Consensus pattern (27 bp):
CTCGCCAAGCCCACTAGCAGACACTAG
Found at i:73204330 original size:24 final size:24
Alignment explanation
Indices: 73204303--73204354 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
73204293 TTAGTAAGTC
*
73204303 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
73204327 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
73204351 AAAT
1 AAAT
73204355 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:73208655 original size:40 final size:40
Alignment explanation
Indices: 73208596--73208703 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
73208586 GAGCATTGGA
*
73208596 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
73208636 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
*
73208676 ATATATCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
73208704 ATGTGTTTGC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGATG
Found at i:73210887 original size:51 final size:50
Alignment explanation
Indices: 73210787--73210890 Score: 181
Period size: 51 Copynumber: 2.1 Consensus size: 50
73210777 CAAACCGAGG
*
73210787 TTCGAAAGAAGTATATCAGTCAGAGTTCATTGACCAAAAATGGAAGGAAT
1 TTCGAAAGAAGTATATCAGTCAGAGTTCATTGACCAAAAACGGAAGGAAT
*
73210837 TTCGAAAGAAGTATATTAGTCAGAGATTCATTGACCAAAAACGGAAGGAAT
1 TTCGAAAGAAGTATATCAGTCAGAG-TTCATTGACCAAAAACGGAAGGAAT
73210888 TTC
1 TTC
73210891 TTGAACTCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 24 0.47
51 27 0.53
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.25
Consensus pattern (50 bp):
TTCGAAAGAAGTATATCAGTCAGAGTTCATTGACCAAAAACGGAAGGAAT
Found at i:73218746 original size:24 final size:24
Alignment explanation
Indices: 73218719--73218770 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
73218709 TTAGTAAGTC
*
73218719 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
73218743 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
73218767 AAAT
1 AAAT
73218771 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:73226861 original size:19 final size:19
Alignment explanation
Indices: 73226819--73226878 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
73226809 CATGGGCTTA
*
73226819 GGCCGAAATGGGCCACGT-TG
1 GGCCGAAATGGG-C-TGTGTG
73226839 GGCCGAAATGGGCTGTGTG
1 GGCCGAAATGGGCTGTGTG
*
73226858 GGCC-TAATGGGCT-TGTG
1 GGCCGAAATGGGCTGTGTG
73226875 GGCC
1 GGCC
73226879 TACACGGATG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
17 8 0.22
18 10 0.27
19 7 0.19
20 12 0.32
ACGTcount: A:0.15, C:0.22, G:0.43, T:0.20
Consensus pattern (19 bp):
GGCCGAAATGGGCTGTGTG
Found at i:73226876 original size:17 final size:18
Alignment explanation
Indices: 73226845--73226880 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
73226835 GTTGGGCCGA
73226845 AATGGGCTGTGTGGGCCT
1 AATGGGCTGTGTGGGCCT
73226863 AATGGGCT-TGTGGGCCT
1 AATGGGCTGTGTGGGCCT
73226880 A
1 A
73226881 CACGGATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.14, C:0.17, G:0.42, T:0.28
Consensus pattern (18 bp):
AATGGGCTGTGTGGGCCT
Found at i:73227182 original size:28 final size:27
Alignment explanation
Indices: 73227111--73227211 Score: 80
Period size: 27 Copynumber: 3.7 Consensus size: 27
73227101 CAAAATAGGT
* *
73227111 AAAATGACCAAAATACCCCTGAAGGAT-
1 AAAATGACTAAAATACCCCT-AAAGATG
* ***
73227138 AAAATAACTATTTTACCCCTAACAGATG
1 AAAATGACTAAAATACCCCTAA-AGATG
* *
73227166 AAAATGACTAAAATACCCCTATAG-GG
1 AAAATGACTAAAATACCCCTAAAGATG
*
73227192 TAAAATGACTGAAATACCCC
1 -AAAATGACTAAAATACCCC
73227212 CATAAGGTAA
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
26 3 0.05
27 38 0.66
28 17 0.29
ACGTcount: A:0.46, C:0.22, G:0.12, T:0.21
Consensus pattern (27 bp):
AAAATGACTAAAATACCCCTAAAGATG
Found at i:73227206 original size:27 final size:27
Alignment explanation
Indices: 73227166--73227444 Score: 350
Period size: 27 Copynumber: 10.3 Consensus size: 27
73227156 CTAACAGATG
* *
73227166 AAAATGACTAAAATACCCCTATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGT
*
73227193 AAAATGACTGAAATACCCCCATAAGGT
1 AAAATGACTGAAATACCCCCATAGGGT
* * * *
73227220 AACATGACCGAAATACCCCCGTAAGGT
1 AAAATGACTGAAATACCCCCATAGGGT
*
73227247 AAAATGA-TCGAAATACCCCTATAGGGT
1 AAAATGACT-GAAATACCCCCATAGGGT
*
73227274 AAAATGACCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGT
*
73227301 AAAATGA-TCGAAATACCCCTATAGGGT
1 AAAATGACT-GAAATACCCCCATAGGGT
*
73227328 AAAATGACCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGT
*
73227355 AAAATGA-TCGAAATACCCCTATAGGGT
1 AAAATGACT-GAAATACCCCCATAGGGT
73227382 AAAATGA-TCGAAATACCCCCATAGGGT
1 AAAATGACT-GAAATACCCCCATAGGGT
* * **
73227409 AAAATGACCGAAATAACCTTATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGT
73227436 AAAATGACT
1 AAAATGACT
73227445 TTTATACCCC
Statistics
Matches: 221, Mismatches: 25, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
27 221 1.00
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
AAAATGACTGAAATACCCCCATAGGGT
Found at i:73227456 original size:81 final size:81
Alignment explanation
Indices: 73227166--73227444 Score: 416
Period size: 81 Copynumber: 3.4 Consensus size: 81
73227156 CTAACAGATG
** * * *
73227166 AAAATGACTAAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCATAAGGTAACATGACCGA
1 AAAATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGATCGA
* *
73227231 AATACCCCCGTAAGGT
66 AATACCCCCATAGGGT
* *
73227247 AAAATGATCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGA
1 AAAATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGATCGA
*
73227312 AATACCCCTATAGGGT
66 AATACCCCCATAGGGT
* *
73227328 AAAATGACCGAAATACCCCCATAGGGTAAAATGA-TCGAAATACCCCTATAGGGTAAAATGATCG
1 AAAATGACCGAAATACCCCTATAGGGTAAAATGACT-GAAATACCCCCATAGGGTAAAATGATCG
73227392 AAATACCCCCATAGGGT
65 AAATACCCCCATAGGGT
* *
73227409 AAAATGACCGAAATAACCTTATAGGGTAAAATGACT
1 AAAATGACCGAAATACCCCTATAGGGTAAAATGACT
73227445 TTTATACCCC
Statistics
Matches: 178, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
81 177 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (81 bp):
AAAATGACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGATCGA
AATACCCCCATAGGGT
Found at i:73227470 original size:54 final size:54
Alignment explanation
Indices: 73227166--73227443 Score: 432
Period size: 54 Copynumber: 5.1 Consensus size: 54
73227156 CTAACAGATG
** * * *
73227166 AAAATGACTAAAATACCCCTATAGGGTAAAATGA-CTGAAATACCCCCATAAGGT
1 AAAATGACCGAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCTATAGGGT
* * *
73227220 AACATGACCGAAATACCCCCGTAAGGTAAAATGATCGAAATACCCCTATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGT
73227274 AAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGT
73227328 AAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGT
* * * *
73227382 AAAATGATCGAAATACCCCCATAGGGTAAAATGACCGAAATAACCTTATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGT
73227436 AAAATGAC
1 AAAATGAC
73227444 TTTTATACCC
Statistics
Matches: 207, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
54 206 1.00
55 1 0.00
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (54 bp):
AAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAGGGT
Found at i:73227713 original size:26 final size:26
Alignment explanation
Indices: 73227677--73227731 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
73227667 TTTGCCACAT
*
73227677 ATACTGTTACTAGCAACTTTGCTACG
1 ATACTGATACTAGCAACTTTGCTACG
* * * *
73227703 ATACTGATACTGGTAGCTTTGCTGCG
1 ATACTGATACTAGCAACTTTGCTACG
73227729 ATA
1 ATA
73227732 TTAGTGTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (26 bp):
ATACTGATACTAGCAACTTTGCTACG
Found at i:73227891 original size:33 final size:33
Alignment explanation
Indices: 73227849--73227931 Score: 130
Period size: 33 Copynumber: 2.5 Consensus size: 33
73227839 ACTGTATTGG
73227849 GCTAAGGCCCACACTGTACTATCACTTCATAGA
1 GCTAAGGCCCACACTGTACTATCACTTCATAGA
* *
73227882 GCTAAGGCCCACACTGTACTGTCACTTCATAGG
1 GCTAAGGCCCACACTGTACTATCACTTCATAGA
* *
73227915 GCTCAGGCCCAGACTGT
1 GCTAAGGCCCACACTGT
73227932 TACTGCATGC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (33 bp):
GCTAAGGCCCACACTGTACTATCACTTCATAGA
Found at i:73229004 original size:29 final size:30
Alignment explanation
Indices: 73228946--73229004 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
73228936 TAAGTTAGAT
*
73228946 AAAGAAATTAGACACAAGCAGAATTAAAGA
1 AAAGAAATTAGACACAAGCAGAATAAAAGA
73228976 AAAGAAATT-GACAGCAAGCA-AATAAAAGA
1 AAAGAAATTAGACA-CAAGCAGAATAAAAGA
73229005 TAAGTCCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.61, C:0.10, G:0.17, T:0.12
Consensus pattern (30 bp):
AAAGAAATTAGACACAAGCAGAATAAAAGA
Found at i:73232585 original size:20 final size:20
Alignment explanation
Indices: 73232560--73232600 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
73232550 TAGTGAACGT
73232560 CCTCTCTGTACAACTTGTAA
1 CCTCTCTGTACAACTTGTAA
73232580 CCTCTCTGTACAACTTGTAA
1 CCTCTCTGTACAACTTGTAA
73232600 C
1 C
73232601 ATCTATGTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.32, G:0.10, T:0.34
Consensus pattern (20 bp):
CCTCTCTGTACAACTTGTAA
Found at i:73233792 original size:16 final size:16
Alignment explanation
Indices: 73233771--73233804 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
73233761 CTACTGAAAC
73233771 AAAGTAAATGTTCCTA
1 AAAGTAAATGTTCCTA
*
73233787 AAAGTAAATGTTTCTA
1 AAAGTAAATGTTCCTA
73233803 AA
1 AA
73233805 TATTTTAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (16 bp):
AAAGTAAATGTTCCTA
Found at i:73237155 original size:25 final size:25
Alignment explanation
Indices: 73237127--73237178 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
73237117 CGCTGAACAA
73237127 TCCTTGCATTTGAGATTGACAACTT
1 TCCTTGCATTTGAGATTGACAACTT
73237152 TCCTTGCATTTGAGATTGACAACTT
1 TCCTTGCATTTGAGATTGACAACTT
73237177 TC
1 TC
73237179 TCTAGAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.40
Consensus pattern (25 bp):
TCCTTGCATTTGAGATTGACAACTT
Found at i:73238341 original size:25 final size:25
Alignment explanation
Indices: 73238311--73238359 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
73238301 AGTGCTCTGA
73238311 CAGCAAAGTCACTTGCATAACACAG
1 CAGCAAAGTCACTTGCATAACACAG
73238336 CAGCAAAGTCACTTGCATAACACA
1 CAGCAAAGTCACTTGCATAACACA
73238360 ATAGTTCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.29, G:0.14, T:0.16
Consensus pattern (25 bp):
CAGCAAAGTCACTTGCATAACACAG
Found at i:73244584 original size:41 final size:41
Alignment explanation
Indices: 73244517--73244649 Score: 203
Period size: 41 Copynumber: 3.2 Consensus size: 41
73244507 TTTATGGTTT
* * *
73244517 CCTTTTCATTTGTTGTCATTTTTGGATAACATCCTTTTCAA
1 CCTTTTCATTTGTTATCCTTTCTGGATAACATCCTTTTCAA
* *
73244558 CCTTTTCATTTGATATCCTTTCTGGATAACATCATTTTCAA
1 CCTTTTCATTTGTTATCCTTTCTGGATAACATCCTTTTCAA
*
73244599 CCTTTTTATTTGTTATCCTTTCTGGATAACATCCTTTTCAA
1 CCTTTTCATTTGTTATCCTTTCTGGATAACATCCTTTTCAA
*
73244640 TCTTTTCATT
1 CCTTTTCATT
73244650 GATTCAGAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 82 1.00
ACGTcount: A:0.20, C:0.21, G:0.08, T:0.51
Consensus pattern (41 bp):
CCTTTTCATTTGTTATCCTTTCTGGATAACATCCTTTTCAA
Found at i:73248681 original size:25 final size:25
Alignment explanation
Indices: 73248653--73248710 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
73248643 ATATTACATT
73248653 ATTTAAATATAATATATATCAATAA
1 ATTTAAATATAATATATATCAATAA
* * *
73248678 ATTTATAA-ATAATTTATATTAATTA
1 ATTTA-AATATAATATATATCAATAA
*
73248703 ATTAAAAT
1 ATTTAAAT
73248711 TATTTGAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
24 2 0.07
25 23 0.85
26 2 0.07
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTTAAATATAATATATATCAATAA
Found at i:73257698 original size:79 final size:81
Alignment explanation
Indices: 73257562--73257744 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
73257552 TCGAATGATG
* *
73257562 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
73257626 TGTGTGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
73257641 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
73257703 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
73257721 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73257745 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:73257753 original size:40 final size:40
Alignment explanation
Indices: 73257562--73257746 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
73257552 TCGAATGATG
* * * *
73257562 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
73257602 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73257642 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73257681 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73257722 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73257747 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73257768 original size:79 final size:79
Alignment explanation
Indices: 73257615--73257779 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
73257605 GGACTAAGAT
* * **
73257615 CCGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
73257680 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
73257694 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
73257757 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73257773 CCGAAGG
1 CCGAAGG
73257780 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73264909 original size:40 final size:40
Alignment explanation
Indices: 73264825--73265009 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 40
73264815 TCGAATGATG
* * * *
73264825 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
73264865 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
73264905 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73264944 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73264984 TCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73265010 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 32 0.26
40 84 0.68
41 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73265031 original size:79 final size:79
Alignment explanation
Indices: 73264878--73265042 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 79
73264868 GGACTAAGAT
* * ** *
73264878 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTATTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
73264943 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
73264957 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CT
* *
73265021 ATATCC-GGTTAAATT
64 AAATCCGGGTTAAATC
73265036 CCGAAGG
1 CCGAAGG
73265043 TACGTGATTT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
79 51 0.70
80 22 0.30
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73265042 original size:39 final size:40
Alignment explanation
Indices: 73264878--73265042 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 40
73264868 GGACTAAGAT
** * * *
73264878 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTC
* * ** *
73264917 CTGAAGGCATTGGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTC
**
73264957 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTC
* * *
73264997 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTC
73265036 CCGAAGG
1 CCGAAGG
73265043 TACGTGATTT
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 48 0.44
40 62 0.56
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAGTC
Found at i:73265137 original size:104 final size:104
Alignment explanation
Indices: 73264957--73265164 Score: 364
Period size: 104 Copynumber: 2.0 Consensus size: 104
73264947 GGGTTAAGTC
* *
73264957 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
1 CCGAAGGCATTTGTACGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
*
73265022 TATCCGGTTAAATTCCGAAGGTACGTGATTTGGGAATGA
66 TATCCGGTTAAATTCCGAAGGTACGTGATTTGGAAATGA
*
73265061 CCGAAGGCATTTGTACGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTACGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
73265125 ATATCCGGTTAAATTCCGAAGGTACGTGATTTGGAAATGA
65 ATATCCGGTTAAATTCCGAAGGTACGTGATTTGGAAATGA
73265165 ATGATCTTGC
Statistics
Matches: 99, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
104 97 0.98
105 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (104 bp):
CCGAAGGCATTTGTACGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
TATCCGGTTAAATTCCGAAGGTACGTGATTTGGAAATGA
Found at i:73268929 original size:16 final size:16
Alignment explanation
Indices: 73268908--73268943 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
73268898 TAAGAAATCA
73268908 CAGCCATGTACTCCTG
1 CAGCCATGTACTCCTG
73268924 CAGCCATGTACTCCTG
1 CAGCCATGTACTCCTG
73268940 CAGC
1 CAGC
73268944 TCCTGAGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.39, G:0.19, T:0.22
Consensus pattern (16 bp):
CAGCCATGTACTCCTG
Found at i:73273074 original size:50 final size:50
Alignment explanation
Indices: 73273028--73274263 Score: 1932
Period size: 50 Copynumber: 24.5 Consensus size: 50
73273018 TATCCCAAGT
* ** * * * * * *
73273028 ATGGTCTTACATGAGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
*** * *
73273078 ATGGTCTTATGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
* * * ** *
73273128 ATGGTCTTACATGAGACCTCTCATCTCGGTGTCAACACCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
*
73273178 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGACATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
* ** * * * * *
73273228 ATGGTCTTACATGGTAGTTCTCATATCAGTGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
*** * * *
73273278 ATGGTCTTATGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273328 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273378 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273428 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273478 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273528 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273578 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273628 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273678 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273728 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273778 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273828 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273878 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273928 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
73273978 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
* *
73274028 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
* *
73274078 ATGGTCTTACATGGGACCTCTCATCTTAGTGCCAACGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
* * *
73274128 ATGGTCTTACATGGGACCTCTCATCGGACCTCTCATCTTGGTGCCAACGCCATGTTCCAGAC
1 ATGGTCTTACATGGGA-C-CTC-TC--A--TCTCA-----GTGCCAACGTCATGTCCCAAAC
* ** * *
73274190 ATGGTCTTACATGAGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
*
73274240 ATGGTCTTACATGAGACCTCTCAT
1 ATGGTCTTACATGGGACCTCTCAT
73274264 AATTTCAATA
Statistics
Matches: 1116, Mismatches: 58, Indels: 24
0.93 0.05 0.02
Matches are distributed among these distances:
50 1060 0.95
51 1 0.00
52 3 0.00
53 2 0.00
55 4 0.00
57 5 0.00
59 2 0.00
60 3 0.00
61 1 0.00
62 35 0.03
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGTCATGTCCCAAAC
Found at i:73274182 original size:112 final size:112
Alignment explanation
Indices: 73274041--73274263 Score: 383
Period size: 112 Copynumber: 2.0 Consensus size: 112
73274031 GTCTTACATG
*
73274041 GGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTA
1 GGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTTA
*
73274106 GTGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATC
66 GTGCCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATC
** * *
73274153 GGACCTCTCATCTTGGTGCCAACGCCATGTTCCAGACATGGTCTTACATGAGACCTCTCATCTTG
1 GGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTTA
*
73274218 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCAT
66 GTGCCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCAT
73274264 AATTTCAATA
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 104 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (112 bp):
GGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTTA
GTGCCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATC
Found at i:73279025 original size:39 final size:40
Alignment explanation
Indices: 73278958--73279068 Score: 111
Period size: 39 Copynumber: 2.8 Consensus size: 40
73278948 TTTAAGTATA
* * * * **
73278958 TAATTATGTCATAATCTGAACATATTTAATA-AGATTTTT
1 TAATTATGTCATAGTTTGGACATATTTAATATACATAATT
73278997 TAATTATGTCATAGTTTAGGACAT-TTTAA-ATACATAATT
1 TAATTATGTCATAGTTT-GGACATATTTAATATACATAATT
* * *
73279036 TAATTATGTCCTAGTTTGGAAATCTTTAATATA
1 TAATTATGTCATAGTTTGGACATATTTAATATA
73279069 TGTGTTTAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
38 6 0.10
39 46 0.77
40 8 0.13
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (40 bp):
TAATTATGTCATAGTTTGGACATATTTAATATACATAATT
Found at i:73285206 original size:28 final size:28
Alignment explanation
Indices: 73285154--73285248 Score: 113
Period size: 29 Copynumber: 3.3 Consensus size: 28
73285144 AGAAGAAAAT
73285154 CCTTTGTGGCAAAACTTTGGAAAGGCAAG
1 CCTTTGTGGCAAAACTTT-GAAAGGCAAG
* *
73285183 CCTTTGTGGCAAACCTATT-AAAGG-ATAA
1 CCTTTGTGGCAAAACT-TTGAAAGGCA-AG
*
73285211 CCTTTGTTGCAAAACTTTAGAAAGGCAAG
1 CCTTTGTGGCAAAACTTT-GAAAGGCAAG
73285240 CCTTTGTGG
1 CCTTTGTGG
73285249 TGAACCTATT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
27 3 0.05
28 20 0.36
29 29 0.53
30 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (28 bp):
CCTTTGTGGCAAAACTTTGAAAGGCAAG
Found at i:73285242 original size:57 final size:57
Alignment explanation
Indices: 73285154--73285274 Score: 188
Period size: 57 Copynumber: 2.1 Consensus size: 57
73285144 AGAAGAAAAT
* *
73285154 CCTTTGTGGCAAAACTTTGGAAAGGCAAGCCTTTGTGGCAAACCTATTAAAGGATAA
1 CCTTTGTGGCAAAACTTTAGAAAGGCAAGCCTTTGTGGCAAACCTATTAAAGGACAA
* **
73285211 CCTTTGTTGCAAAACTTTAGAAAGGCAAGCCTTTGTGGTGAACCTATTAAAGGACAA
1 CCTTTGTGGCAAAACTTTAGAAAGGCAAGCCTTTGTGGCAAACCTATTAAAGGACAA
*
73285268 CTTTTGT
1 CCTTTGT
73285275 AGCAGTGGTG
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (57 bp):
CCTTTGTGGCAAAACTTTAGAAAGGCAAGCCTTTGTGGCAAACCTATTAAAGGACAA
Found at i:73294148 original size:48 final size:48
Alignment explanation
Indices: 73294058--73294254 Score: 223
Period size: 48 Copynumber: 4.1 Consensus size: 48
73294048 AATAGATTTC
* * * * *
73294058 TCGGTGGCCTGCACACAGTCTGTACCACCTTTGTGTAATAACAGATTC
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
* * * * * *
73294106 TCAGTGGCCTGCACATAGTCCGTGTCACCCTTGTATCTTAACAAATTA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
* * * * * * *
73294154 TTGGTGGCCTACACATACTCTGTGCCACCCTTGTGTCACAACAGAATA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
*
73294202 TCGGTGGCTTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
73294250 TCGGT
1 TCGGT
73294255 ACGGATAGTA
Statistics
Matches: 119, Mismatches: 30, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 119 1.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (48 bp):
TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
Found at i:73305638 original size:12 final size:12
Alignment explanation
Indices: 73305621--73305645 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73305611 TCTATATCGA
73305621 GCCTAGCACACG
1 GCCTAGCACACG
73305633 GCCTAGCACACG
1 GCCTAGCACACG
73305645 G
1 G
73305646 ACGTGTGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACG
Found at i:73306172 original size:29 final size:25
Alignment explanation
Indices: 73306140--73306197 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 25
73306130 TTGTACTCGT
73306140 TTTTTCTCTTCTTTATTATCATTATTTTC
1 TTTTTCTCTTCTTT-TT-TC-TT-TTTTC
*
73306169 TTTTTCTTTTCTTTTTTCTTTTTTC
1 TTTTTCTCTTCTTTTTTCTTTTTTC
73306194 TTTT
1 TTTT
73306198 AGCATGTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 9 0.32
26 2 0.07
27 2 0.07
28 2 0.07
29 13 0.46
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTTCTCTTCTTTTTTCTTTTTTC
Found at i:73312309 original size:51 final size:50
Alignment explanation
Indices: 73312188--73312310 Score: 124
Period size: 51 Copynumber: 2.4 Consensus size: 50
73312178 CTGCTTTTTC
* * * *
73312188 AATATCTTGTTTATATAATTATTTTTTAGATTTGATGTTTTAAATAAATATT
1 AATAT-TTGTTTATATTATT-TTGTTTAGATCTGATGTTTTAAACAAATATT
* *
73312240 AATATTTATTTA-ATTTATTTTGTTTAGATCTGATGTTTTTACACAAATA-T
1 AATATTTGTTTATA-TTATTTTGTTTAGATCTGATG-TTTTAAACAAATATT
*
73312290 AGATATTTGGTTATATTATTT
1 A-ATATTTGTTTATATTATTT
73312311 GTTCAAGATA
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
50 17 0.29
51 36 0.61
52 6 0.10
ACGTcount: A:0.33, C:0.03, G:0.09, T:0.55
Consensus pattern (50 bp):
AATATTTGTTTATATTATTTTGTTTAGATCTGATGTTTTAAACAAATATT
Found at i:73312622 original size:82 final size:82
Alignment explanation
Indices: 73312512--73312748 Score: 302
Period size: 82 Copynumber: 2.9 Consensus size: 82
73312502 ATGATTGTCG
* * *
73312512 TTCAATAGATTTTATTCCT-TTTTTATTTTGTTTCCAAACAAGAATTAATTGAATAATTCTATTT
1 TTCAACAGATTTTATT-CTATTTTGATTTTGTTTCCAAACAAGAATTAATTAAATAATTCTATTT
*
73312576 C-AGAATTTATTCTCG-CA
65 CGAG-ATTTATTCCCGCCA
* *
73312593 TCTCAACAGATTTTATTCTATTTTGATTTTGTTTCCAAACAATAATTAAATAAATAATTCTATTT
1 T-TCAACAGATTTTATTCTATTTTGATTTTGTTTCCAAACAAGAATTAATTAAATAATTCTATTT
73312658 CGAGATTTATTCCCGCCA
65 CGAGATTTATTCCCGCCA
* * * * *
73312676 TTTAACAGATTTTATT-TGATTGTGATTTTGTTTCCAAACAAGATTTAATTAAATAATTTTGTTT
1 TTCAACAGATTTTATTCT-ATTTTGATTTTGTTTCCAAACAAGAATTAATTAAATAATTCTATTT
*
73312740 CAAGATTTA
65 CGAGATTTA
73312749 ATCCTGTCGG
Statistics
Matches: 137, Mismatches: 14, Indels: 9
0.86 0.09 0.06
Matches are distributed among these distances:
81 4 0.03
82 128 0.93
83 5 0.04
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (82 bp):
TTCAACAGATTTTATTCTATTTTGATTTTGTTTCCAAACAAGAATTAATTAAATAATTCTATTTC
GAGATTTATTCCCGCCA
Found at i:73312871 original size:12 final size:13
Alignment explanation
Indices: 73312854--73312884 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
73312844 TTTTTTATTT
73312854 ATTGTGGCTTT-A
1 ATTGTGGCTTTAA
73312866 ATTGTGGCTTTAA
1 ATTGTGGCTTTAA
73312879 ATTGTG
1 ATTGTG
73312885 AAAGCTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.19, C:0.06, G:0.26, T:0.48
Consensus pattern (13 bp):
ATTGTGGCTTTAA
Found at i:73312891 original size:28 final size:29
Alignment explanation
Indices: 73312860--73312914 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
73312850 ATTTATTGTG
* * *
73312860 GCTTTAATTGTGGCTTTAAA-TTGTGAAA
1 GCTTAAATTGTAGCTTCAAACTTGTGAAA
73312888 GCTTAAATTGTAGCTTCAAACTTGTGA
1 GCTTAAATTGTAGCTTCAAACTTGTGA
73312915 CATCAAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (29 bp):
GCTTAAATTGTAGCTTCAAACTTGTGAAA
Found at i:73317848 original size:50 final size:48
Alignment explanation
Indices: 73317733--73317849 Score: 146
Period size: 51 Copynumber: 2.4 Consensus size: 48
73317723 CAAGATCTTG
*
73317733 TTTATTTAATTATTT-TTTAGATATGATGTTTTAAATAAATATAAATA
1 TTTATTTAATTATTTGTTTAGATACGATGTTTTAAATAAATATAAATA
* * *
73317780 TTTATTTAATTGATTTTGTTTAGATCCGGTGTTTTTACATAAATATAAATA
1 TTTATTTAATT-A-TTTGTTTAGATACGATG-TTTTAAATAAATATAAATA
*
73317831 TTTGTTTATATTATTTGTT
1 TTTATTTA-ATTATTTGTT
73317850 CAAGATCTTG
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
47 11 0.18
48 1 0.02
49 3 0.05
50 16 0.27
51 26 0.43
52 3 0.05
ACGTcount: A:0.32, C:0.03, G:0.09, T:0.56
Consensus pattern (48 bp):
TTTATTTAATTATTTGTTTAGATACGATGTTTTAAATAAATATAAATA
Found at i:73322416 original size:19 final size:19
Alignment explanation
Indices: 73322392--73322435 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
73322382 CTTCTTAGAA
73322392 GTATTTTTTAAGATAAAAT
1 GTATTTTTTAAGATAAAAT
*
73322411 GTA-TTTTTGAGATAAAAT
1 GTATTTTTTAAGATAAAAT
*
73322429 ATATTTT
1 GTATTTT
73322436 AAAAAAGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (19 bp):
GTATTTTTTAAGATAAAAT
Found at i:73325330 original size:22 final size:23
Alignment explanation
Indices: 73325295--73325338 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
73325285 AAATAATGGT
73325295 TTAAAACATGTAAAACATTTTTC
1 TTAAAACATGTAAAACATTTTTC
* *
73325318 TTAAAAC-TTTAAAATATTTTT
1 TTAAAACATGTAAAACATTTTT
73325339 AAATTACATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.45
Consensus pattern (23 bp):
TTAAAACATGTAAAACATTTTTC
Found at i:73326141 original size:17 final size:18
Alignment explanation
Indices: 73326112--73326146 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
73326102 TTATATTTAT
73326112 TTTAAAAATAATAAAAAA
1 TTTAAAAATAATAAAAAA
73326130 TTTAAAAA-AATAAAAAA
1 TTTAAAAATAATAAAAAA
73326147 GGCATTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
TTTAAAAATAATAAAAAA
Found at i:73326295 original size:10 final size:10
Alignment explanation
Indices: 73326282--73326340 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
73326272 TAGAATTTAG
73326282 AAAAATTATAA
1 AAAAATTAT-A
*
73326293 AAAAATCATA
1 AAAAATTATA
*
73326303 AAAAATTGTA
1 AAAAATTATA
* *
73326313 AATATAATTTTT
1 AA-A-AATTATA
73326325 AAAAATTATA
1 AAAAATTATA
73326335 AAAAAT
1 AAAAAT
73326341 GGAAATATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
10 22 0.56
11 10 0.26
12 7 0.18
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAAATTATA
Found at i:73326371 original size:26 final size:25
Alignment explanation
Indices: 73326323--73326415 Score: 66
Period size: 25 Copynumber: 3.7 Consensus size: 25
73326313 AATATAATTT
*
73326323 TTAAAAATTATAAAAAATGGAAATA
1 TTAAAAATTATAAAAAATAGAAATA
73326348 TTAAAATATTA-AAAATAATAGAAATCA
1 TTAAAA-ATTATAAAA-AATAGAAAT-A
* ** * *
73326375 TTTAGAAA--ATAAAATTTAAAAATT
1 -TTAAAAATTATAAAAAATAGAAATA
*
73326399 TTAAAAATTTTAAAAAA
1 TTAAAAATTATAAAAAA
73326416 ATTTAAAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 14
0.68 0.13 0.19
Matches are distributed among these distances:
23 6 0.12
25 22 0.43
26 16 0.31
27 2 0.04
28 5 0.10
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (25 bp):
TTAAAAATTATAAAAAATAGAAATA
Found at i:73326414 original size:10 final size:10
Alignment explanation
Indices: 73326392--73326427 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
73326382 AATAAAATTT
73326392 AAAAATTTT-
1 AAAAATTTTA
73326401 AAAAATTTTA
1 AAAAATTTTA
*
73326411 AAAAAATTTA
1 AAAAATTTTA
73326421 AAAAATT
1 AAAAATT
73326428 AGATATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAAATTTTA
Found at i:73331318 original size:66 final size:66
Alignment explanation
Indices: 73331204--73331340 Score: 202
Period size: 66 Copynumber: 2.1 Consensus size: 66
73331194 TTGCAGGGAA
* * * *
73331204 ACTTGGAAGCGTTTTCAACATGTTGCATTGAAAACGCTTCCAGCTAGAATCGCTTTCTACTAAGT
1 ACTTGGAAGCATTTTCAACATATTGCATGGAAAACGCTTCCAGCTAGAATCACTTTCTACTAAGT
73331269 C
66 C
* * * *
73331270 ACTTGGAAGCATTTTTAACATATTGCATGGAAAACGCTTTCAGTTAGAATCACTTTCTGCTAAGT
1 ACTTGGAAGCATTTTCAACATATTGCATGGAAAACGCTTCCAGCTAGAATCACTTTCTACTAAGT
73331335 C
66 C
73331336 ACTTG
1 ACTTG
73331341 AAAATGCTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (66 bp):
ACTTGGAAGCATTTTCAACATATTGCATGGAAAACGCTTCCAGCTAGAATCACTTTCTACTAAGT
C
Found at i:73334267 original size:20 final size:18
Alignment explanation
Indices: 73334217--73334268 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
73334207 CTACAAGATA
73334217 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
73334234 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
*
73334254 GATATTAAATTAATA
1 AATATTAAATTAATA
73334269 AAATATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 11 0.38
18 1 0.03
19 3 0.10
20 14 0.48
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:73337915 original size:89 final size:89
Alignment explanation
Indices: 73337759--73337936 Score: 311
Period size: 89 Copynumber: 2.0 Consensus size: 89
73337749 GCTGAAGCTT
*
73337759 CCTCTCGAGCACAGATCGCATAAGCTTTAGTCGACACTGGTGCCTCAAATCTCACAGTAGAGCCT
1 CCTCTCGAGCACAGATCGCATAAGCTTTAGTCGACACTGGTGCCTCAAATCTCACAGCAGAGCCT
73337824 TTCGTTCCACTACGACTATTACCC
66 TTCGTTCCACTACGACTATTACCC
* * * *
73337848 CCTCTCGAGCACGGATCGCATGAGCTTTAGTCGACACTGGTGCCTCAGATCTCACAGCAGAGTCT
1 CCTCTCGAGCACAGATCGCATAAGCTTTAGTCGACACTGGTGCCTCAAATCTCACAGCAGAGCCT
73337913 TTCGTTCCACTACGACTATTACCC
66 TTCGTTCCACTACGACTATTACCC
73337937 GCATTACCAG
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (89 bp):
CCTCTCGAGCACAGATCGCATAAGCTTTAGTCGACACTGGTGCCTCAAATCTCACAGCAGAGCCT
TTCGTTCCACTACGACTATTACCC
Found at i:73351607 original size:5 final size:5
Alignment explanation
Indices: 73351599--73351648 Score: 75
Period size: 5 Copynumber: 10.0 Consensus size: 5
73351589 TTTAAAAACA
*
73351599 CATAT CATAT TATAT CATAT CATAT CA-AT ACATAT CATAT CATAT CATAT
1 CATAT CATAT CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT
73351649 AATAAATATG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
4 2 0.05
5 37 0.90
6 2 0.05
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (5 bp):
CATAT
Found at i:73357277 original size:20 final size:18
Alignment explanation
Indices: 73357230--73357278 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
73357220 CAATATAAAC
73357230 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
73357247 ATTAAGA-TAATAGCTTTAAT
1 ATTAA-ATTAATA--TTTAAT
73357267 ATTAAATTAATA
1 ATTAAATTAATA
73357279 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 8 0.30
18 2 0.07
19 1 0.04
20 16 0.59
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:73364879 original size:39 final size:39
Alignment explanation
Indices: 73364798--73364901 Score: 129
Period size: 39 Copynumber: 2.7 Consensus size: 39
73364788 AAATCATTGT
* * * *
73364798 TATAATTGTTGTAATTATAA-TTTACGATCGAATATTAT
1 TATAATTATTGTAATTATAATTTTACGATCAAACATTAC
*
73364836 TATAATTATTGTAATTATAATTTTTCGATCAAACATTAC
1 TATAATTATTGTAATTATAATTTTACGATCAAACATTAC
* *
73364875 TATAACTATGGTAATTATAATTATTAC
1 TATAATTATTGTAATTATAATT-TTAC
73364902 ATTCGGTTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 19 0.34
39 34 0.61
40 3 0.05
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (39 bp):
TATAATTATTGTAATTATAATTTTACGATCAAACATTAC
Found at i:73365924 original size:29 final size:29
Alignment explanation
Indices: 73365892--73365953 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
73365882 ACTGGAAGTG
* *
73365892 TTTTCCAAAAAAT-GGTCTATTCCCGTAAT
1 TTTTCC-AAAAATCGGCCTATTCACGTAAT
*
73365921 TTTTCCTAAAATCGGCCTATTCACGTAAT
1 TTTTCCAAAAATCGGCCTATTCACGTAAT
73365950 TTTT
1 TTTT
73365954 TTGACATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 24 0.83
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (29 bp):
TTTTCCAAAAATCGGCCTATTCACGTAAT
Found at i:73371812 original size:26 final size:26
Alignment explanation
Indices: 73371752--73371812 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
73371742 TATCCGGAGC
* *
73371752 TCCTGATTAAAAGCTCTTCGTGAGCT
1 TCCTGATTAAAAGCTCTTCATGAACT
* * * *
73371778 TCTTAATTAAAAGTTCTTTATGAACT
1 TCCTGATTAAAAGCTCTTCATGAACT
73371804 TCCTGATTA
1 TCCTGATTA
73371813 TTACTCTTAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (26 bp):
TCCTGATTAAAAGCTCTTCATGAACT
Found at i:73381609 original size:24 final size:24
Alignment explanation
Indices: 73381577--73381624 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
73381567 CAGAGATAGA
73381577 CCCATCAGAAAACATGTAGTGCCT
1 CCCATCAGAAAACATGTAGTGCCT
73381601 CCCATCAGAAAACATGTAGTGCCT
1 CCCATCAGAAAACATGTAGTGCCT
73381625 AATTTGGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (24 bp):
CCCATCAGAAAACATGTAGTGCCT
Found at i:73385840 original size:41 final size:43
Alignment explanation
Indices: 73385726--73385859 Score: 166
Period size: 45 Copynumber: 3.1 Consensus size: 43
73385716 TAGGATTTTT
* *
73385726 TATATGTGTTCTCGTGTAAGACCACGTCTGGGACGATGGCATCGA
1 TATATGTGAT-TCGTGTAAGACCATGTCTGGGAC-ATGGCATCGA
*
73385771 TATATGTGATTACGTGTAAGACCATGTCTAGGACATTGGCATCG-
1 TATATGTGATT-CGTGTAAGACCATGTCTGGGACA-TGGCATCGA
*
73385815 TAT-T-TGATTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGA
1 TATATGTGATTCGTGTAAGACCATGTCTGGGACA-TGGCATCGA
73385857 TAT
1 TAT
73385860 GAGATAGCAT
Statistics
Matches: 80, Mismatches: 6, Indels: 9
0.84 0.06 0.09
Matches are distributed among these distances:
41 29 0.36
42 8 0.10
43 1 0.01
44 5 0.06
45 37 0.46
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TATATGTGATTCGTGTAAGACCATGTCTGGGACATGGCATCGA
Found at i:73395208 original size:46 final size:46
Alignment explanation
Indices: 73395147--73395235 Score: 128
Period size: 46 Copynumber: 1.9 Consensus size: 46
73395137 CACGAATAAT
* *
73395147 GAATCATAGTGTCTGGTCA-CC-TGTAAGGGTTGAACCTATACAAATC
1 GAATAATAGTGTCTGGTCACCCAT-TAA-GGTTGAACCTACACAAATC
73395193 GAATAATAGTGTCTGGTCACCCATTAAGGTTGAACCTACACAA
1 GAATAATAGTGTCTGGTCACCCATTAAGGTTGAACCTACACAA
73395236 CAAATTGTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
46 33 0.85
47 5 0.13
48 1 0.03
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (46 bp):
GAATAATAGTGTCTGGTCACCCATTAAGGTTGAACCTACACAAATC
Found at i:73400145 original size:36 final size:36
Alignment explanation
Indices: 73400093--73400169 Score: 95
Period size: 36 Copynumber: 2.1 Consensus size: 36
73400083 AATCCCAATA
*
73400093 AAAATCTAATAATAATTA-AAAATTAAAAATGTTAAT
1 AAAATCTAATAATAATTATAAAA-TAAAAACGTTAAT
* *
73400129 GAAAATCTCA-AATAATTATAAAATAATAACGTTAAT
1 -AAAATCTAATAATAATTATAAAATAAAAACGTTAAT
73400165 AAAAT
1 AAAAT
73400170 TTTAAAATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 5 0.14
36 19 0.53
37 12 0.33
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (36 bp):
AAAATCTAATAATAATTATAAAATAAAAACGTTAAT
Found at i:73401146 original size:22 final size:22
Alignment explanation
Indices: 73401121--73401164 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
73401111 CTTCTTTAAA
73401121 AAAGAAAAGATCTTTTCCAGAT
1 AAAGAAAAGATCTTTTCCAGAT
73401143 AAAGAAAAGATCTTTTCCAGAT
1 AAAGAAAAGATCTTTTCCAGAT
73401165 TTATTTTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (22 bp):
AAAGAAAAGATCTTTTCCAGAT
Found at i:73413732 original size:51 final size:51
Alignment explanation
Indices: 73413671--73413773 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
73413661 AAATTAAAAG
73413671 ATTATACATACACCAACAATGTTTTTTAGGGTA-AATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGG-ACAATAACATTAAACCAACA
*
73413722 ATTATACATACACCAGCAATGTTTTTTAGGGACAATAACATTAAACCAACA
1 ATTATACATACACCAACAATGTTTTTTAGGGACAATAACATTAAACCAACA
73413773 A
1 A
73413774 GTAATTTTAG
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 1 0.02
51 49 0.98
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.28
Consensus pattern (51 bp):
ATTATACATACACCAACAATGTTTTTTAGGGACAATAACATTAAACCAACA
Found at i:73413782 original size:33 final size:34
Alignment explanation
Indices: 73413719--73413829 Score: 106
Period size: 33 Copynumber: 3.4 Consensus size: 34
73413709 CATTAAACCA
* * *
73413719 ACAATTATACATACACCAGCAATGT-TTTTTAGGG
1 ACAATTATACATAAACCAACAA-GTAATTTTAGGG
73413753 ACAA-TA-ACATTAAACCAACAAGTAATTTTA-GG
1 ACAATTATACA-TAAACCAACAAGTAATTTTAGGG
* * *
73413785 TCAATTATACATACACCAACAATTAATTTTA-GG
1 ACAATTATACATAAACCAACAAGTAATTTTAGGG
*
73413818 TCAATTATACAT
1 ACAATTATACAT
73413830 GCTTTATAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
32 10 0.15
33 50 0.75
34 7 0.10
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (34 bp):
ACAATTATACATAAACCAACAAGTAATTTTAGGG
Found at i:73417001 original size:91 final size:91
Alignment explanation
Indices: 73416875--73417082 Score: 326
Period size: 91 Copynumber: 2.3 Consensus size: 91
73416865 TTGATTTTAG
* *
73416875 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * * *
73416940 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATATTAAATTATA
*
73416967 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
73417032 TGTAATAATAATTATATTAAATTATA
66 TGTAATAATAATTATATTAAATTATA
* *
73417058 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
73417083 GTTATAATTA
Statistics
Matches: 107, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
91 91 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATATTAAATTATA
Found at i:73417049 original size:26 final size:28
Alignment explanation
Indices: 73416997--73417057 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
73416987 TATTATCAAG
* *
73416997 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
73417025 AATTATATGTAATAATA-ATTA-TATTA
1 AATTATATGAAATAATATATTATTATTA
73417051 AATTATA
1 AATTATA
73417058 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 12 0.40
27 4 0.13
28 14 0.47
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:73417056 original size:44 final size:43
Alignment explanation
Indices: 73416896--73417057 Score: 121
Period size: 44 Copynumber: 3.6 Consensus size: 43
73416886 AAGAACATTT
* * * *
73416896 TATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTA
1 TATTAATAATAATTATATGAAATTATATATTATTATTAAATTA
* * * * **
73416939 TATTTAATATTAATTATTTTAAATTGTATAAATTCATATAAGAAAATT-
1 TA-TTAATAATAATTATATGAAA-T-TATATATT-AT-T-ATTAAATTA
* *
73416987 TATT-ATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TATTAAT-AATAATTATATGAAATTATATATTATTATTAAATTA
*
73417030 TATGTAATAATAATTATATTAAATTATA
1 TAT-TAATAATAATTATATGAAATTATA
73417058 CAAATTCATA
Statistics
Matches: 88, Mismatches: 21, Indels: 19
0.69 0.16 0.15
Matches are distributed among these distances:
42 6 0.07
43 6 0.07
44 34 0.39
45 10 0.11
46 9 0.10
47 14 0.16
48 3 0.03
49 6 0.07
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (43 bp):
TATTAATAATAATTATATGAAATTATATATTATTATTAAATTA
Found at i:73417133 original size:16 final size:17
Alignment explanation
Indices: 73417099--73417139 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 17
73417089 ATTATTTTAA
73417099 ATTTT-ATTAAATCATAT
1 ATTTTAATTAAA-CATAT
73417116 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAACATAT
73417132 A-TTTAATT
1 ATTTTAATT
73417140 TTAATTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.30
16 5 0.22
17 5 0.22
18 6 0.26
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTAATTAAACATAT
Found at i:73417253 original size:16 final size:16
Alignment explanation
Indices: 73417232--73417273 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
73417222 TTATTAAATT
*
73417232 ATATATTTTAATTATA
1 ATATATTTTAATAATA
73417248 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
73417263 AT-TATGTTTAA
1 ATATAT-TTTAA
73417274 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:73417258 original size:15 final size:15
Alignment explanation
Indices: 73417223--73417264 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
73417213 TTAAGAATTT
*
73417223 TATTAAATTAT-ATA
1 TATTTAATTATAATA
73417237 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
73417251 TATTTAATAATAAT
1 TATTTAATTATAAT
73417265 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:73417292 original size:67 final size:65
Alignment explanation
Indices: 73417212--73417430 Score: 168
Period size: 67 Copynumber: 3.2 Consensus size: 65
73417202 AATATTAATT
73417212 ATTAAGAAT-TTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 ATTAA-AATATTTATTAAATTATATATTTTAATTA-AATATATTTAATAATAA-TATGTTTAAAT
73417276 ATG
63 ATG
* * * *
73417279 ATTAAATTATTTATTATTGATATTA-ATAATCTT-ATTAAA-AT-TTAAATAACAATATG--TAA
1 ATTAAAATATTTATTA---A-ATTATAT-ATTTTAATTAAATATATTTAATAATAATATGTTTAA
* *
73417338 TTTCTG
61 -ATATG
73417344 CTAATTTTAAGAAT-TTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTAT-TT
1 ---A--TTAA-AATATTTATTAAATTATATATTTTAATT-AAATATATTTAATAATAA-TATGTT
73417407 TAAATATG
58 TAAATATG
73417415 ATTAAAATATTTATTA
1 ATTAAAATATTTATTA
73417431 CTGATAATAA
Statistics
Matches: 118, Mismatches: 12, Indels: 45
0.67 0.07 0.26
Matches are distributed among these distances:
64 3 0.03
65 6 0.05
66 25 0.21
67 27 0.23
68 7 0.06
69 4 0.03
70 27 0.23
71 16 0.14
72 3 0.03
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (65 bp):
ATTAAAATATTTATTAAATTATATATTTTAATTAAATATATTTAATAATAATATGTTTAAATATG
Found at i:73417384 original size:18 final size:17
Alignment explanation
Indices: 73417356--73417390 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
73417346 AATTTTAAGA
*
73417356 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
73417373 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
73417391 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:73417457 original size:136 final size:138
Alignment explanation
Indices: 73417207--73417465 Score: 459
Period size: 136 Copynumber: 1.9 Consensus size: 138
73417197 ATAAGAATAT
* *
73417207 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTATGTTT
* * *
73417272 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATATGTA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATATGTA
73417337 ATTTCTGC
131 ATTTCTGC
73417345 TAATT-TTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTAT-TTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTATGTTT
73417408 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACA
73417466 TTAACAATAA
Statistics
Matches: 116, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
136 58 0.50
137 53 0.46
138 5 0.04
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (138 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATATGTA
ATTTCTGC
Found at i:73417501 original size:155 final size:155
Alignment explanation
Indices: 73417338--73417657 Score: 552
Period size: 155 Copynumber: 2.1 Consensus size: 155
73417328 CAATATGTAA
*
73417338 TTTCTGCTAATTTTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACT
1 TTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACT
*
73417403 AT-TTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAT
66 ATATTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTT-TTAAAATTTAAATAACAA
73417467 TAACAATAATCATCTACCAAAACAAT
130 TAACAATAATCATCTACCAAAACAAT
* * *
73417493 TTTCTGCTAATTATAAGCATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATT
1 TTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACT
*
73417558 ATATTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTTTTAAATTTAAATAACAAT
66 ATATTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTTTAAAATTTAAATAACAAT
*
73417623 AACAATAATCATTTACCAAAACAAT
131 AACAATAATCATCTACCAAAACAAT
*
73417648 TTTATGCTAA
1 TTTCTGCTAA
73417658 GGGTATTCTA
Statistics
Matches: 156, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
155 113 0.72
156 43 0.28
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (155 bp):
TTTCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACT
ATATTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTTTAAAATTTAAATAACAAT
AACAATAATCATCTACCAAAACAAT
Found at i:73417507 original size:136 final size:134
Alignment explanation
Indices: 73417218--73417495 Score: 380
Period size: 136 Copynumber: 2.0 Consensus size: 134
73417208 AATTATTAAG
* *
73417218 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAATATGATTA
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTATGTTTAAATATGATTA
* * * ** * * *
73417283 AATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATATGTAATTTCTGCTAA
66 AAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAAATAATATCTACCAA
*
73417348 TTTTAAG
131 ---TAAC
73417355 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTAT-TTTAAATATGATTA
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTATGTTTAAATATGATTA
*
73417419 AAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTAACAATAATCATCTAC
66 AAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAAT-A-AATAAT-ATCTAC
73417484 CAA-AAC
128 CAATAAC
73417490 AATTTT
1 AATTTT
73417496 CTGCTAATTA
Statistics
Matches: 126, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
135 8 0.06
136 59 0.47
137 49 0.39
138 4 0.03
139 6 0.05
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (134 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAACTATGTTTAAATATGATTA
AAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAAATAATATCTACCAA
TAAC
Found at i:73417539 original size:18 final size:18
Alignment explanation
Indices: 73417511--73417561 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 18
73417501 AATTATAAGC
73417511 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
73417528 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
73417544 A-TTTAATTATAATTATAT
1 ATTTTAATTA-AATTATAT
73417562 TTAAATATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 8 0.27
16 7 0.23
17 5 0.17
18 10 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:73417545 original size:16 final size:16
Alignment explanation
Indices: 73417511--73417563 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
73417501 AATTATAAGC
73417511 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
73417528 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
73417544 A-TTTAATTATAATTAT
1 ATTTTAATTA-AAATAT
73417560 ATTT
1 ATTT
73417564 AAATATGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.25
16 11 0.34
17 7 0.22
18 6 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:73417550 original size:15 final size:16
Alignment explanation
Indices: 73417524--73417565 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
73417514 TTATTAAATT
73417524 ATATATTTTAATTA-AA
1 ATATA-TTTAATTATAA
73417540 ATATATTTAATTATAA
1 ATATATTTAATTATAA
*
73417556 TTATATTTAA
1 ATATATTTAA
73417566 ATATGATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATATTTAATTATAA
Found at i:73417574 original size:16 final size:16
Alignment explanation
Indices: 73417541--73417574 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
73417531 TTAATTAAAA
*
73417541 TATATTTAATTATAAT
1 TATATTTAAATATAAT
*
73417557 TATATTTAAATATGAT
1 TATATTTAAATATAAT
73417573 TA
1 TA
73417575 AAATATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TATATTTAAATATAAT
Found at i:73417789 original size:45 final size:40
Alignment explanation
Indices: 73417690--73417799 Score: 114
Period size: 39 Copynumber: 2.6 Consensus size: 40
73417680 TTTTCCATTA
*
73417690 TGCTATTACACCTCTATTCCATT-CAACCAAACACAATAT
1 TGCTATTACACCTCTATTCCATTACAACCAAAAACAATAT
* **
73417729 TACTATTACACCTCTATTCCATTACATTCAACCAAACAATGAAT
1 TGCTATTACACCTCTATTCCATTACAACCAA--AAACAAT--AT
* *
73417773 TGGCTATTACACCTCTAATCCAATACA
1 T-GCTATTACACCTCTATTCCATTACA
73417800 CCTTTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 22 0.38
40 5 0.09
42 6 0.10
44 3 0.05
45 22 0.38
ACGTcount: A:0.36, C:0.29, G:0.04, T:0.31
Consensus pattern (40 bp):
TGCTATTACACCTCTATTCCATTACAACCAAAAACAATAT
Found at i:73417801 original size:16 final size:16
Alignment explanation
Indices: 73417780--73417815 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
73417770 AATTGGCTAT
73417780 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
73417796 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
73417812 TACA
1 TACA
73417816 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:73418846 original size:18 final size:18
Alignment explanation
Indices: 73418820--73418857 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
73418810 AAATAATTTT
*
73418820 AATATTAAATAATTAATG
1 AATAGTAAATAATTAATG
73418838 AATAGTAAATAATTAATG
1 AATAGTAAATAATTAATG
73418856 AA
1 AA
73418858 AAACATACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.34
Consensus pattern (18 bp):
AATAGTAAATAATTAATG
Found at i:73422587 original size:5 final size:5
Alignment explanation
Indices: 73422579--73422607 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
73422569 CATATCATCA
73422579 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
73422608 AGCTGTCTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:73431489 original size:15 final size:15
Alignment explanation
Indices: 73431469--73431500 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73431459 CATTTCACTA
*
73431469 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
73431484 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
73431499 TT
1 TT
73431501 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:73432631 original size:15 final size:14
Alignment explanation
Indices: 73432603--73432629 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73432593 GAATTTTCTT
73432603 GAAAAATTAATTTG
1 GAAAAATTAATTTG
73432617 GAAAAATTAATTT
1 GAAAAATTAATTT
73432630 TGATCAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.37
Consensus pattern (14 bp):
GAAAAATTAATTTG
Found at i:73433268 original size:59 final size:61
Alignment explanation
Indices: 73433154--73433270 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 61
73433144 AATAATTATA
* * *
73433154 TTAATATTAAATTTAATTTAATGTTTACCTATAAGATAAACATTATATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTACCTAT-AGATAAACATTATATTAATTTAATAAGAT
* * *
73433216 TTAATATTAAATTTAATCTGATATTTATCT-T-GATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTACCTATAGATAAACATTATATTAATTTAATA
73433271 TTAAAGTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 22 0.45
61 1 0.02
62 26 0.53
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (61 bp):
TTAATATTAAATTTAATCTAATATTTACCTATAGATAAACATTATATTAATTTAATAAGAT
Found at i:73435478 original size:22 final size:21
Alignment explanation
Indices: 73435429--73435482 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
73435419 ACTAATAATT
* *
73435429 TTTTTTCATTTTTTAAAAATTA
1 TTTTTT-ATTTTTAAAAAATCA
*
73435451 TCTTTTATTTTTAAAAAATACA
1 TTTTTTATTTTTAAAAAAT-CA
73435473 TTTTTTATTT
1 TTTTTTATTT
73435483 CTCAAGATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTTTTATTTTTAAAAAATCA
Found at i:73438064 original size:2 final size:2
Alignment explanation
Indices: 73438057--73438087 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
73438047 TCGCAAATCA
73438057 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
73438088 TGACGATGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:73440506 original size:13 final size:12
Alignment explanation
Indices: 73440463--73440510 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
73440453 ATTTAGATAA
*
73440463 TATACAAT-TAA
1 TATACAATATAT
73440474 TATA-AATATA-
1 TATACAATATAT
73440484 -ATACAATATAT
1 TATACAATATAT
73440495 TATACAAATATAT
1 TATAC-AATATAT
73440508 TAT
1 TAT
73440511 TTATAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
9 3 0.09
10 9 0.28
11 6 0.19
12 4 0.12
13 10 0.31
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (12 bp):
TATACAATATAT
Found at i:73442165 original size:12 final size:12
Alignment explanation
Indices: 73442148--73442178 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
73442138 ATAATTTCTT
73442148 TTTTATTTTAAA
1 TTTTATTTTAAA
73442160 TTTTATTTTAAA
1 TTTTATTTTAAA
*
73442172 ATTTATT
1 TTTTATT
73442179 ATTATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTATTTTAAA
Found at i:73442173 original size:13 final size:13
Alignment explanation
Indices: 73442148--73442189 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 13
73442138 ATAATTTCTT
73442148 TTTTATTTT-AAA
1 TTTTATTTTAAAA
73442160 TTTTATTTTAAAA
1 TTTTATTTTAAAA
*
73442173 TTTATTATTATAAAA
1 -TT-TTATTTTAAAA
73442188 TT
1 TT
73442190 GGTTAACACT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 9 0.35
13 3 0.12
14 4 0.15
15 10 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTATTTTAAAA
Found at i:73446801 original size:45 final size:44
Alignment explanation
Indices: 73446750--73446838 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 44
73446740 ATAGTCGAAG
* * *
73446750 ATGATATTACATCGTTTTACTTGGGTGTCTTAAATGAAGGGAAA
1 ATGATATTACATCATTTTACTTGGGTGTCTCAAACGAAGGGAAA
* **
73446794 NATGATATTACGTCATTTTGTTTGGGTGTCTCAAACGAAGGGAAA
1 -ATGATATTACATCATTTTACTTGGGTGTCTCAAACGAAGGGAAA
73446839 GAGCTAAAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.35
Consensus pattern (44 bp):
ATGATATTACATCATTTTACTTGGGTGTCTCAAACGAAGGGAAA
Found at i:73452910 original size:45 final size:44
Alignment explanation
Indices: 73452844--73452998 Score: 211
Period size: 45 Copynumber: 3.4 Consensus size: 44
73452834 AGTATACAGT
* * *
73452844 AATCAGTAACGGTAGCAGTAACAGTATTCAACACACAAAGTGCTG
1 AATC-GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
* * *
73452889 AATCTGTAACAGTAACGGTAACGGTATTCGACACACAAAGTGCCG
1 AATC-GTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
73452934 AATCGATAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
1 AATCG-TAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
*
73452979 AATCAGTAATAGTAACAGTA
1 AATC-GTAACAGTAACAGTA
73452999 GTCGGCACAT
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
44 1 0.01
45 95 0.98
46 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (44 bp):
AATCGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
Found at i:73452986 original size:39 final size:40
Alignment explanation
Indices: 73452859--73453025 Score: 144
Period size: 45 Copynumber: 4.0 Consensus size: 40
73452849 GTAACGGTAG
* *
73452859 CAGTAACAGTATTCAACACACAAAGTG-CTGAATCTGTAA
1 CAGTAACAGTATTCGACACACAAAGTGCCTGAATCAGTAA
*
73452898 CAGTAACGGTAACGGTATTCGACACACAAAGTGCCGAATCGATAACAGTAA
1 CAGTAAC----A--GTATTCGACACACAAAGTGCC---T-GA-ATCAGTAA
73452949 CAGTAACAGTATTCGACACACAAAGTG-CTGAATCAGTAA
1 CAGTAACAGTATTCGACACACAAAGTGCCTGAATCAGTAA
* * * *
73452988 TAGTAACAGTAGTCGGCACA-TAAGTGCCT-AATCAGTAA
1 CAGTAACAGTATTCGACACACAAAGTGCCTGAATCAGTAA
73453026 GCCGGCAAAT
Statistics
Matches: 107, Mismatches: 8, Indels: 27
0.75 0.06 0.19
Matches are distributed among these distances:
38 14 0.13
39 33 0.31
40 2 0.02
41 1 0.01
43 1 0.01
44 1 0.01
45 37 0.35
46 1 0.01
47 1 0.01
49 1 0.01
50 2 0.02
51 13 0.12
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (40 bp):
CAGTAACAGTATTCGACACACAAAGTGCCTGAATCAGTAA
Found at i:73454537 original size:18 final size:18
Alignment explanation
Indices: 73454516--73454552 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
73454506 AAAGGAAGAC
73454516 AGAAAAAGA-AATCGAAAA
1 AGAAAAAGAGAAT-GAAAA
73454534 AGAAAAAGAGAATGAAAA
1 AGAAAAAGAGAATGAAAA
73454552 A
1 A
73454553 AGAGCAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.73, C:0.03, G:0.19, T:0.05
Consensus pattern (18 bp):
AGAAAAAGAGAATGAAAA
Found at i:73456359 original size:33 final size:35
Alignment explanation
Indices: 73456322--73456393 Score: 114
Period size: 33 Copynumber: 2.1 Consensus size: 35
73456312 GAGTTAGTTT
73456322 ATTAAATTTT-GTTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
*
73456355 ATT-AATTTTAGTTCAGCTTAAATAAGTGTTAGTA
1 ATTAAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
73456389 ATTAA
1 ATTAA
73456394 TTTGTTTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
32 6 0.17
33 24 0.69
34 4 0.11
35 1 0.03
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.42
Consensus pattern (35 bp):
ATTAAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:73467606 original size:41 final size:42
Alignment explanation
Indices: 73467511--73467626 Score: 155
Period size: 41 Copynumber: 2.8 Consensus size: 42
73467501 AGCCCGTACA
* * *
73467511 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCTAGACAG-GGTCTTACATG-AATCAAATATCG
*
73467554 ATGCCACTGTCCTAGACAGGGTCTTACATGAATCAAATA-CG
1 ATGCCAATGTCCTAGACAGGGTCTTACATGAATCAAATATCG
*
73467595 ATGCCAATGTCCTAGACATGGTCTTACATGAA
1 ATGCCAATGTCCTAGACAGGGTCTTACATGAA
73467627 AACACATATC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
41 32 0.48
42 8 0.12
43 25 0.38
44 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACAGGGTCTTACATGAATCAAATATCG
Found at i:73468573 original size:15 final size:14
Alignment explanation
Indices: 73468536--73468579 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
73468526 TTTTATTATA
73468536 ATAACTTTATAATAT
1 ATAACTTTATAAT-T
*
73468551 ATAA-TTTATTATT
1 ATAACTTTATAATT
73468564 ATAACCTTTATAATT
1 ATAA-CTTTATAATT
73468579 A
1 A
73468580 ATATAAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 5 0.20
14 7 0.28
15 13 0.52
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
ATAACTTTATAATT
Found at i:73482854 original size:40 final size:40
Alignment explanation
Indices: 73482758--73482875 Score: 116
Period size: 40 Copynumber: 3.0 Consensus size: 40
73482748 AGATGCATAA
* *
73482758 CAGAGGCATCGAAGTGCGAACAGAGGCA-CGAATGTGCAGG
1 CAGAGGCATCGAAGTGCGAATAGAGACACCGAA-GTGCAGG
* * * * *
73482798 TAGAGGCA-CCATAGTGCGATTAGAGACACCGAAGTGTATG
1 CAGAGGCATCGA-AGTGCGAATAGAGACACCGAAGTGCAGG
*
73482838 CAGAGGCATCGAAGTGCAAATAGAGGA-ACCGAAGTGCA
1 CAGAGGCATCGAAGTGCGAATAGA-GACACCGAAGTGCA
73482876 AACCCGTACA
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
39 2 0.03
40 52 0.84
41 8 0.13
ACGTcount: A:0.35, C:0.19, G:0.33, T:0.14
Consensus pattern (40 bp):
CAGAGGCATCGAAGTGCGAATAGAGACACCGAAGTGCAGG
Found at i:73482862 original size:20 final size:19
Alignment explanation
Indices: 73482759--73482877 Score: 67
Period size: 20 Copynumber: 5.9 Consensus size: 19
73482749 GATGCATAAC
* *
73482759 AGAGGCATCGAAGTGCGAAC
1 AGAGGCA-CGAAGTGCAAAT
**
73482779 AGAGGCACGAATGTGCAGGT
1 AGAGGCACGAA-GTGCAAAT
* * *
73482799 AGAGGCACCATAGTGCGATT
1 AGAGGCACGA-AGTGCAAAT
* * ***
73482819 AGAGACACCGAAGTGTATGC
1 AGAGGCA-CGAAGTGCAAAT
73482839 AGAGGCATCGAAGTGCAAAT
1 AGAGGCA-CGAAGTGCAAAT
*
73482859 AGAGGAACCGAAGTGCAAA
1 AGAGGCA-CGAAGTGCAAA
73482878 CCCGTACAAG
Statistics
Matches: 73, Mismatches: 23, Indels: 6
0.72 0.23 0.06
Matches are distributed among these distances:
19 4 0.05
20 66 0.90
21 3 0.04
ACGTcount: A:0.36, C:0.18, G:0.33, T:0.13
Consensus pattern (19 bp):
AGAGGCACGAAGTGCAAAT
Found at i:73494436 original size:23 final size:21
Alignment explanation
Indices: 73494395--73494436 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
73494385 TCAAACACTA
73494395 TTATAATTATGGTAATTATAT
1 TTATAATTATGGTAATTATAT
*
73494416 TTATAATATTTGGTTAATTAT
1 TTATAAT-TATGG-TAATTAT
73494437 TAAAATATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 4 0.22
23 7 0.39
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.55
Consensus pattern (21 bp):
TTATAATTATGGTAATTATAT
Done.