Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 238 of 313
Found at i:73497187 original size:43 final size:43
Alignment explanation
Indices: 73497085--73497201 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
73497075 TGTCATGGAG
* * *
73497085 TCTTTCATCCATGGTCTTACTCATTATACTTGGTTACCATAGCA
1 TCTTTCATCCATGGTCTTACTCCTTATAC-CGGGTACCATAGCA
** *
73497129 TCACTCATCTATGGTCTTACTCCTTATACCGGGTAGCCAT-GCA
1 TCTTTCATCCATGGTCTTACTCCTTATACCGGGTA-CCATAGCA
* *
73497172 TCTTTCATCCATGGTCTTACGCCATATACC
1 TCTTTCATCCATGGTCTTACTCCTTATACC
73497202 TTTACCTTGT
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
43 32 0.52
44 29 0.48
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (43 bp):
TCTTTCATCCATGGTCTTACTCCTTATACCGGGTACCATAGCA
Found at i:73505244 original size:21 final size:21
Alignment explanation
Indices: 73505218--73505269 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
73505208 TGCATCTATG
*
73505218 GGCCTTAAAATGGGCTTACAA
1 GGCCTTAAAATGGGATTACAA
* **
73505239 GGCCTTACAATGGGATTATGA
1 GGCCTTAAAATGGGATTACAA
73505260 GGCCTTAAAA
1 GGCCTTAAAA
73505270 ATAGTTAGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (21 bp):
GGCCTTAAAATGGGATTACAA
Found at i:73506621 original size:20 final size:18
Alignment explanation
Indices: 73506595--73506655 Score: 77
Period size: 20 Copynumber: 3.1 Consensus size: 18
73506585 ATAGATGTAT
73506595 AACAGAGGCACCAAAGTGC
1 AACAGAGGCA-CAAAGTGC
73506614 AGACAGAGGCACAAATGTGC
1 A-ACAGAGGCACAAA-GTGC
73506634 AAGCAGAGGCACAGAAGTGC
1 AA-CAGAGGCACA-AAGTGC
73506654 AA
1 AA
73506656 ACAAAGCACG
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
19 6 0.16
20 30 0.79
21 2 0.05
ACGTcount: A:0.43, C:0.21, G:0.30, T:0.07
Consensus pattern (18 bp):
AACAGAGGCACAAAGTGC
Found at i:73513486 original size:13 final size:13
Alignment explanation
Indices: 73513465--73513494 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
73513455 CAAAGTGAAC
*
73513465 TTCTTTCCTTATT
1 TTCTATCCTTATT
73513478 TTCTATCCTTATT
1 TTCTATCCTTATT
73513491 TTCT
1 TTCT
73513495 TAAAGTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.23, G:0.00, T:0.67
Consensus pattern (13 bp):
TTCTATCCTTATT
Found at i:73517184 original size:48 final size:48
Alignment explanation
Indices: 73517117--73517278 Score: 207
Period size: 48 Copynumber: 3.4 Consensus size: 48
73517107 GTGTGGCATG
*
73517117 GACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGGGTGGCACG
1 GACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGGGTGGCACA
*
73517165 GACTGTGTGCAGGCTACCAATATTCTGTTAAGATACAAGGGTGGCACA
1 GACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGGGTGGCACA
* * * * * ** * * *
73517213 GATTATGTGTAGGCCACCAAGAGTCTGTTATTACACAAAGGTGGTACA
1 GACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGGGTGGCACA
*
73517261 GACTGTGTGTAGGCCACC
1 GACTGTGTGCAGGCCACC
73517279 GAGAAATCTA
Statistics
Matches: 99, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 99 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
GACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGGGTGGCACA
Found at i:73524168 original size:47 final size:48
Alignment explanation
Indices: 73524099--73524216 Score: 175
Period size: 48 Copynumber: 2.5 Consensus size: 48
73524089 CGCATATGCA
73524099 GCACGGACTGTGTGCAGGCCACC-ATATTCTATTAACATACAAGGGTG
1 GCACGGACTGTGTGCAGGCCACCAATATTCTATTAACATACAAGGGTG
* * *
73524146 GCACGGATTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGGGTG
1 GCACGGACTGTGTGCAGGCCACCAATATTCTATTAACATACAAGGGTG
* **
73524194 GCACGGACTATGTGTTGGCCACC
1 GCACGGACTGTGTGCAGGCCACC
73524217 GAGAGTCTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 22 0.35
48 41 0.65
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (48 bp):
GCACGGACTGTGTGCAGGCCACCAATATTCTATTAACATACAAGGGTG
Found at i:73525765 original size:41 final size:41
Alignment explanation
Indices: 73525720--73525797 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
73525710 CATATGTTCA
73525720 AGATATGTAATGTAGTAATACGTGAAATTAATATGAACTCG
1 AGATATGTAATGTAGTAATACGTGAAATTAATATGAACTCG
* *
73525761 AGATATGTAATGTATTAATATGTGAAATTAATATGAA
1 AGATATGTAATGTAGTAATACGTGAAATTAATATGAA
73525798 GAGATTTATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.44, C:0.04, G:0.18, T:0.35
Consensus pattern (41 bp):
AGATATGTAATGTAGTAATACGTGAAATTAATATGAACTCG
Found at i:73533948 original size:40 final size:40
Alignment explanation
Indices: 73533828--73534050 Score: 218
Period size: 40 Copynumber: 5.6 Consensus size: 40
73533818 TTGAATGCTG
* * * * * *
73533828 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
73533868 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
73533908 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * **
73533948 TCCAGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
73533988 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
73534027 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
73534051 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.22
40 115 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:73534070 original size:79 final size:80
Alignment explanation
Indices: 73533903--73534085 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
73533893 GTGCGAGATA
** *
73533903 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCAGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGG
** **
73533968 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * * *
73533983 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGG
* *
73534047 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
73534062 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
73534086 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 44 0.52
80 27 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCAGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:73540521 original size:72 final size:72
Alignment explanation
Indices: 73540308--73540555 Score: 417
Period size: 72 Copynumber: 3.4 Consensus size: 72
73540298 NNNNNNNNNN
* *
73540308 CAATATGAGTTGAATTTTGAAGACAGAAATTGAAATGACCTCAACGTGTCTTGAGGCTCAACTCA
1 CAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
73540373 TTTCTCG
66 TTTCTCG
* *
73540380 CAATATGAGTTGAATTTTGAGAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTC
1 CAATATGAGTTGAATTTTGA-AAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTC
73540445 ATTTCTCG
65 ATTTCTCG
*
73540453 CAATATGAGTTGAGTTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
1 CAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
73540518 TTTCTCG
66 TTTCTCG
*
73540525 CAATATGAGTTG-ATTTTGAAAAACAAAAATT
1 CAATATGAGTTGAATTTTG-AAAACAGAAATT
73540556 AAAAGGCTTA
Statistics
Matches: 165, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
71 5 0.03
72 93 0.56
73 67 0.41
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (72 bp):
CAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
TTTCTCG
Found at i:73540654 original size:122 final size:125
Alignment explanation
Indices: 73540434--73540677 Score: 343
Period size: 122 Copynumber: 2.0 Consensus size: 125
73540424 ACGTGTCTTG
** * * * * *
73540434 AGGCTCAACTCATTTCTCGCAATATGAGTTGAGTTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAGATTTGAAAACAGAAACTAAAAATACCTCAACG
*
73540499 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTGAAAAACAAAAATTAAA
66 TATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAAAAATTAAA
* * *
73540559 AGGCTTAACTCACCTCTCGCAATATGAG-TCA-ATTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTCAGATTTGAAAACAGAAACTAAAAATACCTCAACG
*
73540621 TATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT
66 TATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATT
73540678 GAAATTACCT
Statistics
Matches: 106, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
122 70 0.66
123 9 0.08
124 2 0.02
125 25 0.24
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (125 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTCAGATTTGAAAACAGAAACTAAAAATACCTCAACG
TATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAAAAATTAAA
Found at i:73540701 original size:72 final size:72
Alignment explanation
Indices: 73540559--73540969 Score: 542
Period size: 72 Copynumber: 5.7 Consensus size: 72
73540549 AAAAATTAAA
* ** * * * * * *
73540559 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCAATG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
73540621 TATCTTG
66 TGTCTTG
73540628 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
73540693 TGTCTTG
66 TGTCTTG
* *
73540700 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
*
73540765 GTGTCCTG
65 GTGTCTTG
*
73540773 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
73540838 TGTCTTG
66 TGTCTTG
* * *
73540845 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAA-AACAGAAATTGAAATTACCTCA
* *
73540910 GCGTGTCCTG
63 ACGTGTCTTG
** * *
73540920 AGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACATAAATT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
73540970 AAAAGGCTTA
Statistics
Matches: 305, Mismatches: 29, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
69 25 0.08
70 3 0.01
71 3 0.01
72 141 0.46
73 70 0.23
74 6 0.02
75 57 0.19
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCTTG
Found at i:73540818 original size:145 final size:142
Alignment explanation
Indices: 73540559--73540969 Score: 567
Period size: 145 Copynumber: 2.8 Consensus size: 142
73540549 AAAAATTAAA
* ** * * * **
73540559 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTTAAAACATAAACTAAAAATACCTCAATGT
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTAAAACAGAAA-TTAAAATACCTCAGCGT
* *
73540622 ATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACC
65 GTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACC
73540687 TCAACGTGTCTTG
130 TCAACGTGTCTTG
73540700 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAGC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT-AAAA-CAGAAATT-AAAATACCTCAGC
*
73540765 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTA
63 GTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
73540830 CCTCAACGTGTCTTG
128 CCTCAACGTGTCTTG
*
73540845 AGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTAAAATTACCTCA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA---ATTTTAA-AACAGAAATTAAAA-TACCTCA
** * *
73540910 GCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACATAAATT
61 GCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
73540970 AAAAGGCTTA
Statistics
Matches: 242, Mismatches: 17, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
141 25 0.10
142 3 0.01
143 3 0.01
144 5 0.02
145 125 0.52
146 10 0.04
147 65 0.27
148 6 0.02
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (142 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTAAAACAGAAATTAAAATACCTCAGCGTG
TCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCT
CAACGTGTCTTG
Found at i:73553095 original size:11 final size:11
Alignment explanation
Indices: 73553079--73553105 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
73553069 CTACATGTTT
73553079 AGCTTTACGAA
1 AGCTTTACGAA
73553090 AGCTTTACGAA
1 AGCTTTACGAA
73553101 AGCTT
1 AGCTT
73553106 ACTAAGTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (11 bp):
AGCTTTACGAA
Found at i:73564339 original size:32 final size:32
Alignment explanation
Indices: 73564300--73564361 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
73564290 ACATACCATG
73564300 CACTCAATGTTAGCTTGACCAAATATCCCCCT
1 CACTCAATGTTAGCTTGACCAAATATCCCCCT
73564332 CACTCAATGTTAGCTTGACCAAATATCCCC
1 CACTCAATGTTAGCTTGACCAAATATCCCC
73564362 TTTCTTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.29, C:0.34, G:0.10, T:0.27
Consensus pattern (32 bp):
CACTCAATGTTAGCTTGACCAAATATCCCCCT
Found at i:73569096 original size:3 final size:3
Alignment explanation
Indices: 73569088--73569114 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
73569078 CACGACTCCT
73569088 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
73569115 CAACCATGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:73570676 original size:15 final size:15
Alignment explanation
Indices: 73570656--73570689 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
73570646 ACTCAAATAG
73570656 ACCGGATTTAACTTA
1 ACCGGATTTAACTTA
73570671 ACCGGATTTAACTTA
1 ACCGGATTTAACTTA
73570686 ACCG
1 ACCG
73570690 AAACTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (15 bp):
ACCGGATTTAACTTA
Found at i:73572421 original size:16 final size:16
Alignment explanation
Indices: 73572399--73572467 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
73572389 TTTGGTTCGC
73572399 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
73572415 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
73572431 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
73572448 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
73572464 TGTA
1 TGTA
73572468 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:73572445 original size:33 final size:32
Alignment explanation
Indices: 73572399--73572467 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
73572389 TTTGGTTCGC
73572399 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
73572431 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
73572464 TGTA
1 TGTA
73572468 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:73575152 original size:33 final size:33
Alignment explanation
Indices: 73575113--73575222 Score: 93
Period size: 33 Copynumber: 3.3 Consensus size: 33
73575103 ATTATAAAGC
73575113 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* * * *
73575146 ATGTATAACCT-AACTAAAATTACTTGTTGGTTT
1 ATGTATAA-TTGACCTAAAATTAATTGTTGGTGT
* * *
73575179 AATGT-T-ATTGTCCCTAAAA-AACATTGCTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
73575212 ATGTATAATTG
1 ATGTATAATTG
73575223 TTGGTTTAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
31 1 0.02
32 6 0.10
33 43 0.73
34 9 0.15
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:73575229 original size:51 final size:51
Alignment explanation
Indices: 73575169--73575373 Score: 385
Period size: 51 Copynumber: 4.0 Consensus size: 51
73575159 CTAAAATTAC
*
73575169 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGCTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGTTGGTGTATGTATAA
73575220 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
73575271 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
73575322 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
73575373 T
1 T
73575374 CTTTTAATTT
Statistics
Matches: 152, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
50 1 0.01
51 151 0.99
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.45
Consensus pattern (51 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGTATAA
Found at i:73576852 original size:76 final size:76
Alignment explanation
Indices: 73576726--73576912 Score: 374
Period size: 76 Copynumber: 2.5 Consensus size: 76
73576716 TAACATTTTC
73576726 ATCTTACCTATTTTTGCTACTTTCAGAGGACCAAATTACAACAGAACAAACAAACAAAAGAACTC
1 ATCTTACCTATTTTTGCTACTTTCAGAGGACCAAATTACAACAGAACAAACAAACAAAAGAACTC
73576791 GAACTGCAGAA
66 GAACTGCAGAA
73576802 ATCTTACCTATTTTTGCTACTTTCAGAGGACCAAATTACAACAGAACAAACAAACAAAAGAACTC
1 ATCTTACCTATTTTTGCTACTTTCAGAGGACCAAATTACAACAGAACAAACAAACAAAAGAACTC
73576867 GAACTGCAGAA
66 GAACTGCAGAA
73576878 ATCTTACCTATTTTTGCTACTTTCAGAGGACCAAA
1 ATCTTACCTATTTTTGCTACTTTCAGAGGACCAAA
73576913 AGAACTCAAT
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 111 1.00
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.25
Consensus pattern (76 bp):
ATCTTACCTATTTTTGCTACTTTCAGAGGACCAAATTACAACAGAACAAACAAACAAAAGAACTC
GAACTGCAGAA
Found at i:73585035 original size:14 final size:14
Alignment explanation
Indices: 73585016--73585045 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
73585006 CCAAACAATG
73585016 TTTGAACTTGGAAA
1 TTTGAACTTGGAAA
73585030 TTTGAACTTGGAAA
1 TTTGAACTTGGAAA
73585044 TT
1 TT
73585046 GGAAGACTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (14 bp):
TTTGAACTTGGAAA
Found at i:73586843 original size:23 final size:23
Alignment explanation
Indices: 73586817--73586860 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
73586807 TCAGTGTCTG
*
73586817 CCATTTCTTTCCTTTAGATTTTT
1 CCATTTCTTTCCTTCAGATTTTT
73586840 CCATTTCTTTCCTTCAGATTT
1 CCATTTCTTTCCTTCAGATTT
73586861 CAACACAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.14, C:0.25, G:0.05, T:0.57
Consensus pattern (23 bp):
CCATTTCTTTCCTTCAGATTTTT
Found at i:73586913 original size:28 final size:28
Alignment explanation
Indices: 73586859--73586938 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
73586849 TCCTTCAGAT
* *
73586859 TTCAACACAATGGCT-TCCTTTTTAGAGG
1 TTCACCACAATGGCTATCC-TTTCAGAGG
*
73586887 TTCGCCACAAAT-GCTATCCTTTCAGAGG
1 TTCACCAC-AATGGCTATCCTTTCAGAGG
*
73586915 TTCACCACAATGGTTATCCTTTCA
1 TTCACCACAATGGCTATCCTTTCA
73586939 TTAAAAATGG
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
27 3 0.07
28 35 0.80
29 6 0.14
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (28 bp):
TTCACCACAATGGCTATCCTTTCAGAGG
Found at i:73592472 original size:22 final size:21
Alignment explanation
Indices: 73592450--73592500 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 21
73592440 ACGGCTAAGA
*
73592450 AAAAGAGAGGAAGAAAAGAAG
1 AAAAGAGAGAAAGAAAAGAAG
73592471 AAAAGAG-GAAAGAAAAGAGAGG
1 AAAAGAGAGAAAGAAAAGA-A-G
73592493 AAAAGAGA
1 AAAAGAGA
73592501 ATACTAGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 10 0.38
21 8 0.31
22 8 0.31
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (21 bp):
AAAAGAGAGAAAGAAAAGAAG
Found at i:73594925 original size:41 final size:41
Alignment explanation
Indices: 73594774--73594919 Score: 188
Period size: 41 Copynumber: 3.6 Consensus size: 41
73594764 ACCGACAAAT
* * * *
73594774 AGCCTGCTAGATGTAAAGTATGAAATATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAATATTTAACAGGCATCA
* * * *
73594815 AGCCTGCTAGACATAAAGTCTGAAATATTCATCA-GTATCA
1 AGCCTGCTAGACGTAAAGTCTGAAATATTTAACAGGCATCA
*
73594855 AGCCTGCTTGACGTAAAGTCTG-AATCATTTAACAGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAAT-ATTTAACAGGCATCA
73594896 AGCCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
73594920 TCATTTTACT
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 31 0.35
41 53 0.60
42 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAATATTTAACAGGCATCA
Found at i:73602874 original size:41 final size:41
Alignment explanation
Indices: 73602817--73602917 Score: 159
Period size: 41 Copynumber: 2.5 Consensus size: 41
73602807 AATTAGTCTA
*
73602817 CTAGACGTAAAGTCTGAAATATTTCACCGGCATCAAACCTG
1 CTAGACGTAAAGTCTGAAATATTTCACAGGCATCAAACCTG
* *
73602858 CTAGACATAAAGTCTGAAATATTTCACAGGCATCAAGCCTG
1 CTAGACGTAAAGTCTGAAATATTTCACAGGCATCAAACCTG
*
73602899 CTAGATGTAAAGTCT-AAAT
1 CTAGACGTAAAGTCTGAAAT
73602918 CATCTTACTT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 4 0.07
41 51 0.93
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.26
Consensus pattern (41 bp):
CTAGACGTAAAGTCTGAAATATTTCACAGGCATCAAACCTG
Found at i:73606158 original size:36 final size:36
Alignment explanation
Indices: 73606111--73606181 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
73606101 GATTATGTAA
* *
73606111 TCTTAGAGTTCTAATTGTATGCAGCTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAACTTCTAATTGTG
*
73606147 TCTTAGAGTTCTAATTGTATACAACTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAACTTCTAATTGT
73606182 AGCCTTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.46
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAACTTCTAATTGTG
Found at i:73606160 original size:19 final size:19
Alignment explanation
Indices: 73606110--73606166 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
73606100 TGATTATGTA
73606110 ATCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
*
73606129 ATGC--AG-CTTCTAATTGT
1 AT-CTTAGAGTTCTAATTGT
*
73606146 GTCTTAGAGTTCTAATTGT
1 ATCTTAGAGTTCTAATTGT
73606165 AT
1 AT
73606167 ACAACTTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.03
17 11 0.37
18 4 0.13
19 13 0.43
20 1 0.03
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.46
Consensus pattern (19 bp):
ATCTTAGAGTTCTAATTGT
Found at i:73606461 original size:48 final size:48
Alignment explanation
Indices: 73606386--73606480 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
73606376 TGAGGGAATT
*
73606386 CTGTTGAATCATTTATCTTTGCAAGTTAGGCCAACTTAGGCGTTTTTG
1 CTGTTGAATCATTTATCATTGCAAGTTAGGCCAACTTAGGCGTTTTTG
* * **
73606434 CTGTTGAATCCTTTATCATTGCGAGTTAGGCTGACTTAGGCGTTTTT
1 CTGTTGAATCATTTATCATTGCAAGTTAGGCCAACTTAGGCGTTTTT
73606481 AAGCAAAGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (48 bp):
CTGTTGAATCATTTATCATTGCAAGTTAGGCCAACTTAGGCGTTTTTG
Found at i:73612310 original size:16 final size:16
Alignment explanation
Indices: 73612289--73612327 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
73612279 TTCGCTGTAT
73612289 TGGAATAGAGACGTAA
1 TGGAATAGAGACGTAA
*
73612305 TGGAATAGAGGCGTAA
1 TGGAATAGAGACGTAA
73612321 TAGGAAT
1 T-GGAAT
73612328 TTCTATTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.41, C:0.05, G:0.33, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGACGTAA
Found at i:73612397 original size:44 final size:46
Alignment explanation
Indices: 73612303--73612398 Score: 144
Period size: 44 Copynumber: 2.1 Consensus size: 46
73612293 ATAGAGACGT
*
73612303 AATGGAATAGAGGCGTAATAGGAATTTCTATTGTTTGGTTGAATGT
1 AATGGAATAGAGGCGTAATAGGAATTTCTATTGTTTGGTTGAATGA
*
73612349 AATGGAATAGAGGCGTAATA-GTA-TTCT-TGTGTTTGGTTGAATGA
1 AATGGAATAGAGGCGTAATAGGAATTTCTAT-TGTTTGGTTGAATGA
73612393 AATGGA
1 AATGGA
73612399 GGTGAAATAG
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
43 1 0.02
44 24 0.51
45 2 0.04
46 20 0.43
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAGGCGTAATAGGAATTTCTATTGTTTGGTTGAATGA
Found at i:73612582 original size:18 final size:17
Alignment explanation
Indices: 73612555--73612589 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
73612545 TTATTATTAA
*
73612555 ATATATTTTAATCAAAAT
1 ATATAATTTAAT-AAAAT
73612573 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
73612590 TCTTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:73612635 original size:61 final size:61
Alignment explanation
Indices: 73612544--73612838 Score: 259
Period size: 61 Copynumber: 4.9 Consensus size: 61
73612534 TTTTAACATA
* **
73612544 ATTATTATTAAATATATTTTAATCAAAATATATAATTTAATAAAATTCTTAATATTAAA-T
1 ATTATTATTAAATATAATAAAATCAAAATATATAATTTAATAAAATTCTTAATATTAAAGT
* * * * * * *
73612604 ATTCTTATATGAATTTACTAAAATCATAATATATAATACT-ATAAAA-T-ATAAT-TTAAAGTT
1 ATTATTAT-TAAATATAATAAAATCAAAATATATAAT-TTAATAAAATTCTTAATATTAAAG-T
** *
73612664 ATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA-T
1 ATTATTATTAAATATAATAAAATCAAAATATATAATTTAATAAAATTCTTAATATTAAAGT
* * * * * * *
73612724 ATTCTTATATGAATTTACTAAAATCATAATATATAATACT-ATAAAA-T-ATAAT-TTAAAGTT
1 ATTATTAT-TAAATATAATAAAATCAAAATATATAAT-TTAATAAAATTCTTAATATTAAAG-T
** *
73612784 ATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTATTATTAAATATAATAAAATCAAAATATATAATTTAATAAAATTCTTAATAT
73612839 NAACTTGATA
Statistics
Matches: 180, Mismatches: 39, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
58 12 0.07
59 62 0.34
60 35 0.19
61 63 0.35
62 8 0.04
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (61 bp):
ATTATTATTAAATATAATAAAATCAAAATATATAATTTAATAAAATTCTTAATATTAAAGT
Found at i:73612748 original size:120 final size:120
Alignment explanation
Indices: 73612544--73612838 Score: 572
Period size: 120 Copynumber: 2.5 Consensus size: 120
73612534 TTTTAACATA
* *
73612544 ATTATTATTAAATATATTTTAATCAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 ATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
73612609 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAGTT
66 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAGTT
73612664 ATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 ATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
73612729 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAGTT
66 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAGTT
73612784 ATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
73612839 NAACTTGATA
Statistics
Matches: 173, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 173 1.00
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (120 bp):
ATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAGTT
Found at i:73618691 original size:160 final size:160
Alignment explanation
Indices: 73618504--73618816 Score: 536
Period size: 160 Copynumber: 2.0 Consensus size: 160
73618494 GATGTCCTTC
* * *
73618504 ACGTAGAAGGTGCTTACCAAGTGAGAAACAAGGAAACTCCATGCTCTTCAAGAAACAAAGGCAAG
1 ACGTAAAAGGTGCCTACCAAATGAGAAACAAGGAAACTCCATGCTCTTCAAGAAACAAAGGCAAG
* *
73618569 GAGAAATGGAATCAAGCAAGAGAAAGGAAAAAAAGAGATGCTGGAAAGAAAAAGTATCCACAATG
66 AAGAAATGGAATCAAGCAAGAGAAAGGAAAAAAAGAGATGCAGGAAAGAAAAAGTATCCACAATG
*
73618634 ATCAAATTGCAAAAAGATGGGTCATTCATA
131 ATCAAATTGCAAAAAGATAGGTCATTCATA
*
73618664 ACGTAAAAGGTGCCTACCAAATGAGAAACAAGGAAGCTCCATGCTCTTCAAGAAACAAAGGCAAG
1 ACGTAAAAGGTGCCTACCAAATGAGAAACAAGGAAACTCCATGCTCTTCAAGAAACAAAGGCAAG
* * *
73618729 AAGAAATGGAATCAAGCAAGAGAAAGGCAAAAAAGAGATGGAGGAAAGAAAAAGTATCCACCATG
66 AAGAAATGGAATCAAGCAAGAGAAAGGAAAAAAAGAGATGCAGGAAAGAAAAAGTATCCACAATG
73618794 ATCAAATTGCAAAAAGATAGGTC
131 ATCAAATTGCAAAAAGATAGGTC
73618817 GTTCGTAAAA
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
160 143 1.00
ACGTcount: A:0.48, C:0.15, G:0.23, T:0.14
Consensus pattern (160 bp):
ACGTAAAAGGTGCCTACCAAATGAGAAACAAGGAAACTCCATGCTCTTCAAGAAACAAAGGCAAG
AAGAAATGGAATCAAGCAAGAGAAAGGAAAAAAAGAGATGCAGGAAAGAAAAAGTATCCACAATG
ATCAAATTGCAAAAAGATAGGTCATTCATA
Found at i:73620632 original size:29 final size:31
Alignment explanation
Indices: 73620599--73620658 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
73620589 TTAATGATAG
73620599 TGAG-AAAA-ATATATATATGTTTTTGACTT
1 TGAGAAAAATATATATATATGTTTTTGACTT
73620628 TGAGAAAAATATATATATATGTTTTTGACTT
1 TGAGAAAAATATATATATATGTTTTTGACTT
73620659 ACTAAGCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 4 0.14
30 4 0.14
31 21 0.72
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.45
Consensus pattern (31 bp):
TGAGAAAAATATATATATATGTTTTTGACTT
Found at i:73623482 original size:29 final size:29
Alignment explanation
Indices: 73623449--73623508 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
73623439 TTGAAATAAA
*
73623449 TTTGAAGCAAATAATATAGATATATTAAT
1 TTTGAAGCAAATAATATACATATATTAAT
73623478 TTTGAAGCAAATAATATACATATATTAAT
1 TTTGAAGCAAATAATATACATATATTAAT
73623507 TT
1 TT
73623509 AACATAGGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.40
Consensus pattern (29 bp):
TTTGAAGCAAATAATATACATATATTAAT
Found at i:73632761 original size:29 final size:29
Alignment explanation
Indices: 73632728--73632793 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
73632718 CTTCTCTAGC
* * **
73632728 CAATGTTGCAACCTTGGGCATTTTGATCT
1 CAATGTTGCAACATTGAGCATTCCGATCT
**
73632757 CAATGTTGCGGCATTGAGCATTCCGATCT
1 CAATGTTGCAACATTGAGCATTCCGATCT
73632786 CAATGTTG
1 CAATGTTG
73632794 TGACATTCAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (29 bp):
CAATGTTGCAACATTGAGCATTCCGATCT
Found at i:73635773 original size:23 final size:22
Alignment explanation
Indices: 73635732--73635774 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
73635722 ATATTAAAAT
*
73635732 AAAGAAATAAATAATTTAAACA
1 AAAGAAATAAATAACTTAAACA
*
73635754 AAAGACATGAAATAACTTAAA
1 AAAGAAAT-AAATAACTTAAA
73635775 AAATTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.21
Consensus pattern (22 bp):
AAAGAAATAAATAACTTAAACA
Found at i:73641018 original size:184 final size:184
Alignment explanation
Indices: 73640709--73641076 Score: 709
Period size: 184 Copynumber: 2.0 Consensus size: 184
73640699 ATTGTCTCTG
73640709 GTTAATTTGTAATGAATTTCCAAAGTCGGAACAGGAAATCCAGAAACCGTTCTGGCCCTGTCTCA
1 GTTAATTTGTAATGAATTTCCAAAGTCGGAACAGGAAATCCAGAAACCGTTCTGGCCCTGTCTCA
* *
73640774 CAAGAACCTGAATATCTCTTACCATACTATCTGTATGATTGTTTCGTTACTTTCCTATGAAAATA
66 CAAGAACCTGAATATCTCTTACCATACTATCCGTATGATTATTTCGTTACTTTCCTATGAAAATA
73640839 GATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACT
131 GATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACT
*
73640893 GTTAATTTGTAATGAATTTCCAAAGTCGGAACAGGAAATCTAGAAACCGTTCTGGCCCTGTCTCA
1 GTTAATTTGTAATGAATTTCCAAAGTCGGAACAGGAAATCCAGAAACCGTTCTGGCCCTGTCTCA
73640958 CAAGAACCTGAATATCTCTTACCATACTATCCGTATGATTATTTCGTTACTTTCCTATGAAAATA
66 CAAGAACCTGAATATCTCTTACCATACTATCCGTATGATTATTTCGTTACTTTCCTATGAAAATA
73641023 GATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACT
131 GATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACT
73641077 ATTTTTAGTG
Statistics
Matches: 181, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 181 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (184 bp):
GTTAATTTGTAATGAATTTCCAAAGTCGGAACAGGAAATCCAGAAACCGTTCTGGCCCTGTCTCA
CAAGAACCTGAATATCTCTTACCATACTATCCGTATGATTATTTCGTTACTTTCCTATGAAAATA
GATTCATCAAGGTTCGTTTACATAATTTATTCACTATTTAATTCCATTCCTACT
Found at i:73641520 original size:262 final size:262
Alignment explanation
Indices: 73641055--73641578 Score: 1012
Period size: 262 Copynumber: 2.0 Consensus size: 262
73641045 TAATTTATTC
*
73641055 ACTATTTAATTCCATTCCTACTATTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTATCAGC
1 ACTATTTAATTCCATTCCTACTATATTTAGTGATTTTCCAAATCTACATCACTGCTGCTATCAGC
73641120 ATCTACCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCAT
66 ATCTACCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCAT
73641185 AAATAGCACAATTTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCATATCCACA
131 AAATAGCACAATTTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCATATCCACA
73641250 CCTCTCAATAACCATATCCATACCAAATGATTATAACATTATACTCAAACATATATAAGCCATTT
196 CCTCTCAATAACCATATCCATACCAAATGATTATAACATTATACTCAAACATATATAAGCCATTT
73641315 TT
261 TT
73641317 ACTATTTAATTCCATTCCTACTATATTTAGTGATTTTCCAAATCTACATCACTGCTGCTATCAGC
1 ACTATTTAATTCCATTCCTACTATATTTAGTGATTTTCCAAATCTACATCACTGCTGCTATCAGC
*
73641382 ATCTACCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTTGCAT
66 ATCTACCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCAT
*
73641447 AAATAGCACAATTTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAATCATATCCACA
131 AAATAGCACAATTTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCATATCCACA
*
73641512 CCTCTCAATAACCATATCCATACCAAATGATTATAACATTATACTCAAACGTATATAAGCCATTT
196 CCTCTCAATAACCATATCCATACCAAATGATTATAACATTATACTCAAACATATATAAGCCATTT
73641577 TT
261 TT
73641579 GCATGGCTAT
Statistics
Matches: 258, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
262 258 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (262 bp):
ACTATTTAATTCCATTCCTACTATATTTAGTGATTTTCCAAATCTACATCACTGCTGCTATCAGC
ATCTACCTTTAAGGTAGACTTTACCTATTTCATAGTTTCCATGATTCAACTAGCCCTTTTAGCAT
AAATAGCACAATTTATGATAGTGATTAACCATTCCCATGGCCAATCCTTGTCAAGCATATCCACA
CCTCTCAATAACCATATCCATACCAAATGATTATAACATTATACTCAAACATATATAAGCCATTT
TT
Found at i:73642325 original size:119 final size:120
Alignment explanation
Indices: 73642141--73642363 Score: 283
Period size: 119 Copynumber: 1.9 Consensus size: 120
73642131 GCTACTCGTT
*
73642141 CAAACGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAACGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
73642206 ATTTAGTAAC-TCGAACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
66 ATATAGTAACTTAGAACAAA-GCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
* * * **
73642261 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAACGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * * *
73642323 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 GGATATAGTAACTTAGAACAAAGCCTTCGGGACTTAACCCG
73642364 GACATCATTC
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.73
120 20 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAACGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGAACAAAGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
Found at i:73642365 original size:40 final size:40
Alignment explanation
Indices: 73642122--73642365 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
73642112 CGGAATTTAA
** * *
73642122 CCGGATATAGCT-ACTCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73642162 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
73642202 CCGGATTTAGTAACTCGAACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73642242 CCGAATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73642281 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
73642321 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
73642361 CCGGA
1 CCGGA
73642366 CATCATTCAA
Statistics
Matches: 176, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 130 0.74
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:73645724 original size:57 final size:57
Alignment explanation
Indices: 73645636--73645749 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
73645626 TGGTCGAACA
*
73645636 AATCATCGATGCGCGGCAACGGATATTTGTTCTTTATCGTCACTTTATTCAGTTGAC
1 AATCATCGATACGCGGCAACGGATATTTGTTCTTTATCGTCACTTTATTCAGTTGAC
*
73645693 AATCATCGATACGCGGTAACGGATATTTGTTCTTTATCGTCACTTTATTCAGTTGAC
1 AATCATCGATACGCGGCAACGGATATTTGTTCTTTATCGTCACTTTATTCAGTTGAC
73645750 GATAGTCAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (57 bp):
AATCATCGATACGCGGCAACGGATATTTGTTCTTTATCGTCACTTTATTCAGTTGAC
Found at i:73648650 original size:38 final size:38
Alignment explanation
Indices: 73648599--73648675 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
73648589 GAAAGTAACT
*
73648599 AGGTCCATTTCATGCCTACCCTTGATCCAACTCAATCG
1 AGGTCCATTTCATGCCTACCCTCGATCCAACTCAATCG
73648637 AGGTCCATTTCATGCCTACCCTCGATCCAACTCAATCG
1 AGGTCCATTTCATGCCTACCCTCGATCCAACTCAATCG
73648675 A
1 A
73648676 ACATTCGTGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.25, C:0.35, G:0.13, T:0.27
Consensus pattern (38 bp):
AGGTCCATTTCATGCCTACCCTCGATCCAACTCAATCG
Found at i:73649364 original size:27 final size:27
Alignment explanation
Indices: 73649334--73649511 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
73649324 ATATTGAGCC
* *
73649334 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
73649361 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
73649388 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
73649416 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
73649443 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
73649470 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
73649497 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73649512 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:73649446 original size:55 final size:54
Alignment explanation
Indices: 73649334--73649511 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
73649324 ATATTGAGCC
* * * * *
73649334 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
73649388 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
73649443 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
73649497 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73649512 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:73667414 original size:56 final size:56
Alignment explanation
Indices: 73667335--73667440 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 56
73667325 AGAGATAAGT
73667335 GCAACTTACGATACACGGAGAACGAGCAAGAAGACGATACTCAACTCCCATAAGGC
1 GCAACTTACGATACACGGAGAACGAGCAAGAAGACGATACTCAACTCCCATAAGGC
* *
73667391 GCAACTTATGATACAC-GATGAACGAGCAAGAAGATGATACTCAACTCCCA
1 GCAACTTACGATACACGGA-GAACGAGCAAGAAGACGATACTCAACTCCCA
73667441 ACCAACGAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
55 2 0.04
56 45 0.96
ACGTcount: A:0.40, C:0.25, G:0.20, T:0.15
Consensus pattern (56 bp):
GCAACTTACGATACACGGAGAACGAGCAAGAAGACGATACTCAACTCCCATAAGGC
Found at i:73681787 original size:15 final size:15
Alignment explanation
Indices: 73681767--73681809 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
73681757 TACTGTAAAT
*
73681767 TGGATTTCCTTATCA
1 TGGATTTCTTTATCA
*
73681782 TGGATTTCTTTATCT
1 TGGATTTCTTTATCA
73681797 TGGATTTCTTTAT
1 TGGATTTCTTTAT
73681810 TCTAGGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.56
Consensus pattern (15 bp):
TGGATTTCTTTATCA
Found at i:73685158 original size:27 final size:27
Alignment explanation
Indices: 73685127--73685205 Score: 149
Period size: 27 Copynumber: 2.9 Consensus size: 27
73685117 TCTAATGAAA
73685127 TGTTCATGCTTGAGAATAAGATTTTAT
1 TGTTCATGCTTGAGAATAAGATTTTAT
73685154 TGTTCATGCTTGAGAATAAGATTTTAT
1 TGTTCATGCTTGAGAATAAGATTTTAT
*
73685181 TATTCATGCTTGAGAATAAGATTTT
1 TGTTCATGCTTGAGAATAAGATTTT
73685206 TTTTCTTGAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (27 bp):
TGTTCATGCTTGAGAATAAGATTTTAT
Found at i:73690670 original size:28 final size:28
Alignment explanation
Indices: 73690628--73690720 Score: 152
Period size: 28 Copynumber: 3.3 Consensus size: 28
73690618 ATGTACTAGA
73690628 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
73690656 ATACCCCTATATATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATTACCATT
*
73690684 ATACCCCTATGTATGCAAAATGACC-TCT
1 ATACCCCTATGTATGCAAAATTACCAT-T
73690712 ATACCCCTA
1 ATACCCCTA
73690721 GGGTTAATTT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 1 0.02
28 60 0.98
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.30
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTACCATT
Found at i:73690884 original size:27 final size:27
Alignment explanation
Indices: 73690826--73690915 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
73690816 AGGAAGCGTC
73690826 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
73690854 CTGGTGGCCCTGCCACATATATCTCTT
1 CTGGTGGCACTGCCACAAATATCTGTT
73690881 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
73690910 CTGGTG
1 CTGGTG
73690916 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:73690926 original size:29 final size:28
Alignment explanation
Indices: 73690826--73690915 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
73690816 AGGAAGCGTC
*
73690826 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* * *
73690854 CTGGTGGCCCTGCCAC-ATATATCTCTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
73690881 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
73690910 CTGGTG
1 CTGGTG
73690916 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:73695336 original size:40 final size:39
Alignment explanation
Indices: 73695272--73695366 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 39
73695262 TTATCTCGGT
73695272 ATCGCACACTTAGTGCCTCA--TATAGCCAAAGCTATTCCA
1 ATCGCACACTTAGTG-CT-ATTTATAGCCAAAGCTATTCCA
* * * **
73695311 ACTCGCACATTTAGTGCTATTTATAGCCGAAGCTGTTTGA
1 A-TCGCACACTTAGTGCTATTTATAGCCAAAGCTATTCCA
73695351 ATCGCACACTTAGTGC
1 ATCGCACACTTAGTGC
73695367 CGAACATAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
38 1 0.02
39 17 0.36
40 29 0.62
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (39 bp):
ATCGCACACTTAGTGCTATTTATAGCCAAAGCTATTCCA
Found at i:73705628 original size:49 final size:49
Alignment explanation
Indices: 73705562--73705948 Score: 719
Period size: 49 Copynumber: 8.0 Consensus size: 49
73705552 NNNNNNTCAC
*
73705562 ATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
73705611 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
73705658 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
73705707 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
73705756 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
73705805 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
73705854 ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
73705901 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
73705949 ATTTAGAATT
Statistics
Matches: 330, Mismatches: 5, Indels: 7
0.96 0.01 0.02
Matches are distributed among these distances:
47 93 0.28
49 237 0.72
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:73705722 original size:96 final size:96
Alignment explanation
Indices: 73705558--73705948 Score: 705
Period size: 96 Copynumber: 4.1 Consensus size: 96
73705548 NNNNNNNNNN
* *
73705558 TCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTT
73705623 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
*
73705654 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTT
73705719 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
73705750 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACAC
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACAC
73705815 TTTCACATTCATCACATCGGCCATTAGGCCTTA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTA
73705848 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--ATATATACAC
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACAC
73705911 TTTCACATTCATCACATCGGCCATTAGGCCTTA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTA
73705944 TCACA
1 TCACA
73705949 ATTTAGAATT
Statistics
Matches: 291, Mismatches: 2, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
94 1 0.00
96 146 0.50
98 144 0.49
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (96 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:73707398 original size:13 final size:13
Alignment explanation
Indices: 73707380--73707404 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73707370 TACTAAATTT
73707380 TCATGGATTCAAG
1 TCATGGATTCAAG
73707393 TCATGGATTCAA
1 TCATGGATTCAA
73707405 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:73709890 original size:40 final size:40
Alignment explanation
Indices: 73709846--73709961 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
73709836 GAATACATGT
* * *
73709846 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
73709886 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* **
73709926 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
73709962 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:73710433 original size:29 final size:29
Alignment explanation
Indices: 73710394--73710472 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
73710384 CTTAATAATC
*
73710394 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73710424 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73710453 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73710473 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73710515 original size:43 final size:43
Alignment explanation
Indices: 73710454--73710556 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
73710444 TGCATTTCAA
73710454 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73710497 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
73710540 GCTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
73710557 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:73712470 original size:37 final size:37
Alignment explanation
Indices: 73712410--73712485 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
73712400 TATTACGAAA
* *
73712410 TCTTACCCGGACATAATCTCCACACGAAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
73712447 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
73712484 TC
1 TC
73712486 CTTAGAACTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.21
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:73712684 original size:47 final size:47
Alignment explanation
Indices: 73712608--73712727 Score: 141
Period size: 47 Copynumber: 2.5 Consensus size: 47
73712598 CTTCGGGACT
* * * **
73712608 TATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAAGCCC
* * * *
73712655 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCT
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAAGCCC
73712702 TATCACATATATATACACTTTCACAT
1 TATCAC--ATATATACACTTTCACAT
73712728 ATGGGTTTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
47 43 0.70
49 18 0.30
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAAGCCC
Found at i:73713201 original size:150 final size:150
Alignment explanation
Indices: 73712930--73713231 Score: 595
Period size: 150 Copynumber: 2.0 Consensus size: 150
73712920 TTTCCAGAAT
73712930 TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGCTTGACTAAT
1 TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGCTTGACTAAT
*
73712995 CTGACCACTCTTTACTACGAATCAAATTTCTCATTATCAGAAATTCCTTTGCTTACACGGTTTCT
66 CTGACCACTCTTTACTACGAATCAAATTTCTCATTATCAAAAATTCCTTTGCTTACACGGTTTCT
73713060 TTTATAAGAAACTAGACTCA
131 TTTATAAGAAACTAGACTCA
73713080 TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGCTTGACTAAT
1 TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGCTTGACTAAT
73713145 CTGACCACTCTTTACTACGAATCAAATTTCTCATTATCAAAAATTCCTTTGCTTACACGGTTTCT
66 CTGACCACTCTTTACTACGAATCAAATTTCTCATTATCAAAAATTCCTTTGCTTACACGGTTTCT
73713210 TTTATAAGAAACTAGACTCA
131 TTTATAAGAAACTAGACTCA
73713230 TT
1 TT
73713232 AAGCTTTAAT
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 151 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (150 bp):
TTTAGGTTTGGCCAATCAATACCAGATTTTTCTTAAAGTTTCCCCTGTTTCACTGCTTGACTAAT
CTGACCACTCTTTACTACGAATCAAATTTCTCATTATCAAAAATTCCTTTGCTTACACGGTTTCT
TTTATAAGAAACTAGACTCA
Found at i:73714310 original size:13 final size:13
Alignment explanation
Indices: 73714292--73714316 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73714282 TACTAAATTT
73714292 TCATGGATTCAAG
1 TCATGGATTCAAG
73714305 TCATGGATTCAA
1 TCATGGATTCAA
73714317 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:73717359 original size:29 final size:29
Alignment explanation
Indices: 73717320--73717398 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
73717310 CTTAATAATC
*
73717320 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
73717350 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
73717379 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73717399 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:73717441 original size:43 final size:43
Alignment explanation
Indices: 73717380--73717740 Score: 713
Period size: 43 Copynumber: 8.4 Consensus size: 43
73717370 TGCATTTCAA
73717380 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73717423 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73717466 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73717509 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73717552 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73717595 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73717638 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
73717681 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
73717724 GCTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
73717741 TGAAAACCAA
Statistics
Matches: 317, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 317 1.00
ACGTcount: A:0.27, C:0.35, G:0.14, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:73719652 original size:37 final size:37
Alignment explanation
Indices: 73719592--73719667 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
73719582 TATTACGAAA
* *
73719592 TCTTACCCGGACATAATCTCCACACGAAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
73719629 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
73719666 TC
1 TC
73719668 CTTAGAACTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.21
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:73719866 original size:47 final size:47
Alignment explanation
Indices: 73719788--73720003 Score: 297
Period size: 47 Copynumber: 4.6 Consensus size: 47
73719778 CCCTTCGGGA
* * * * * **
73719788 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
73719835 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
** *
73719882 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
73719929 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
73719976 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
73720004 ATGGGTTTAA
Statistics
Matches: 149, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
47 131 0.88
49 18 0.12
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:73725529 original size:3 final size:3
Alignment explanation
Indices: 73725523--73725556 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
73725513 TTTTTTAAAT
73725523 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
73725557 ATATTAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:73726952 original size:11 final size:12
Alignment explanation
Indices: 73726927--73726953 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
73726917 GTTGTTTGGA
73726927 TTTTACCTTATT
1 TTTTACCTTATT
73726939 TTTTACCTTATT
1 TTTTACCTTATT
73726951 TTT
1 TTT
73726954 GTAATTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTACCTTATT
Found at i:73730807 original size:25 final size:23
Alignment explanation
Indices: 73730753--73730807 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 23
73730743 TATAGCTAAT
**
73730753 TTAATAATAATTACATATGAAAA
1 TTAATAATAATTACATAACAAAA
73730776 -TAATAATAATTACATTAACAAAA
1 TTAATAATAATTACA-TAACAAAA
73730799 TTAACTAAT
1 TTAA-TAAT
73730808 TTTAAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 14 0.52
23 6 0.22
24 3 0.11
25 4 0.15
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.35
Consensus pattern (23 bp):
TTAATAATAATTACATAACAAAA
Found at i:73739727 original size:25 final size:25
Alignment explanation
Indices: 73739693--73739747 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 25
73739683 ATAGATTATA
73739693 AAAAATAATTA-TATATAAATAAAAT
1 AAAAATAATTACTATATAAA-AAAAT
73739718 AAAAATAATTACCTTATATAAAAAAAT
1 AAAAATAATTA-C-TATATAAAAAAAT
73739745 AAA
1 AAA
73739748 TATGCAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 11 0.41
27 8 0.30
28 8 0.30
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (25 bp):
AAAAATAATTACTATATAAAAAAAT
Found at i:73741564 original size:132 final size:132
Alignment explanation
Indices: 73741361--73742032 Score: 1013
Period size: 132 Copynumber: 5.1 Consensus size: 132
73741351 TGCGACTTCG
* * * * *
73741361 GGGAGATAAGATTTGTAATCTTCAATCTTCTCCACTGCTGCTCAGGGAGACAAGGCATGGTGGCT
1 GGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGG-T
*
73741426 TT-AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTGC
65 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
73741490 TTA
130 TTA
* **
73741493 GGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGGGGGAGACAAGGCTTGGTGGTT
1 GGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGTT
** * * *
73741558 TAAATCTGCTTCCTGCTATTTTGGAAAGATAAGATTCGCCATCTTCGATCTGCTCCAGTACTGCT
66 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCT
73741623 TA
131 TA
* * * * * *
73741625 AGGAGATAAGATCTATAATATTTAACCTTCTTCGTTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
1 GGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGTT
*
73741690 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGCCTTCGATCTGCTCCACTACTGCT
66 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCT
73741755 TA
131 TA
*
73741757 GGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGTTCAGGGAGACAAGGCTTGGTGGTT
1 GGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGTT
* * *
73741822 TAAATCTGCTTCCTACTATTTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCT
66 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCT
73741887 TA
131 TA
* * * *
73741889 GGGAGATAAGATCTATAATCTTCAACATTCTCCGCTACTGCTCAGGGAGACAAAGCTTGGTGGCT
1 GGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGTT
* * * **
73741954 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTAGATCTGCTCCACTGCAACT
66 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC-
73742019 TTA
130 TTA
73742022 GGGAGATAAGA
1 GGGAGATAAGA
73742033 CTACTAGTTA
Statistics
Matches: 489, Mismatches: 49, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
131 3 0.01
132 472 0.97
133 14 0.03
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (132 bp):
GGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGTT
TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCT
TA
Found at i:73741911 original size:44 final size:44
Alignment explanation
Indices: 73741732--73741938 Score: 111
Period size: 44 Copynumber: 4.7 Consensus size: 44
73741722 GATTCGCCGC
*
73741732 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
* * * * * * **
73741776 CTTCAACCTTCTCCGCTGCTG-TTCAGGGAGACAAG-GCT-TGGT
1 CTTCAATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTATAAT
* * * ** * * ***
73741818 GGTTTAAATCTGCTTC-CTACTATTTTGGAAAGATAAGAT-TCACCGT
1 --CTTCAATCTGCTCCACTACTGCTTAGG-GAGATAAGATCT-ATAAT
*
73741864 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
* * *
73741908 CTTCAA-CATTCTCCGCTACTGCTCAGGGAGA
1 CTTCAATC-TGCTCCACTACTGCTTAGGGAGA
73741939 CAAAGCTTGG
Statistics
Matches: 115, Mismatches: 37, Indels: 22
0.66 0.21 0.13
Matches are distributed among these distances:
42 2 0.02
43 11 0.10
44 90 0.78
45 10 0.09
46 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
Found at i:73742170 original size:316 final size:316
Alignment explanation
Indices: 73741797--73742427 Score: 1262
Period size: 316 Copynumber: 2.0 Consensus size: 316
73741787 TCCGCTGCTG
73741797 TTCAGGGAGACAAGGCTTGGTGGTTTAAATCTGCTTCCTACTATTTTGGAAAGATAAGATTCACC
1 TTCAGGGAGACAAGGCTTGGTGGTTTAAATCTGCTTCCTACTATTTTGGAAAGATAAGATTCACC
73741862 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACATTCTCCGCTAC
66 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACATTCTCCGCTAC
73741927 TGCTCAGGGAGACAAAGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCA
131 TGCTCAGGGAGACAAAGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCA
73741992 CCGTCTTAGATCTGCTCCACTGCAACTTTAGGGAGATAAGACTACTAGTTACCGATCTGTTCTCT
196 CCGTCTTAGATCTGCTCCACTGCAACTTTAGGGAGATAAGACTACTAGTTACCGATCTGTTCTCT
73742057 AGGGAACATGACCTGTAAAAATCTGTTCTATGAACTTAATTATGCCTAGAGATTAA
261 AGGGAACATGACCTGTAAAAATCTGTTCTATGAACTTAATTATGCCTAGAGATTAA
73742113 TTCAGGGAGACAAGGCTTGGTGGTTTAAATCTGCTTCCTACTATTTTGGAAAGATAAGATTCACC
1 TTCAGGGAGACAAGGCTTGGTGGTTTAAATCTGCTTCCTACTATTTTGGAAAGATAAGATTCACC
73742178 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACATTCTCCGCTAC
66 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACATTCTCCGCTAC
73742243 TGCTCAGGGAGACAAAGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCA
131 TGCTCAGGGAGACAAAGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCA
73742308 CCGTCTTAGATCTGCTCCACTGCAACTTTAGGGAGATAAGACTACTAGTTACCGATCTGTTCTCT
196 CCGTCTTAGATCTGCTCCACTGCAACTTTAGGGAGATAAGACTACTAGTTACCGATCTGTTCTCT
73742373 AGGGAACATGACCTGTAAAAATCTGTTCTATGAACTTAATTATGCCTAGAGATTA
261 AGGGAACATGACCTGTAAAAATCTGTTCTATGAACTTAATTATGCCTAGAGATTA
73742428 GGATGTCATG
Statistics
Matches: 315, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
316 315 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (316 bp):
TTCAGGGAGACAAGGCTTGGTGGTTTAAATCTGCTTCCTACTATTTTGGAAAGATAAGATTCACC
GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACATTCTCCGCTAC
TGCTCAGGGAGACAAAGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCA
CCGTCTTAGATCTGCTCCACTGCAACTTTAGGGAGATAAGACTACTAGTTACCGATCTGTTCTCT
AGGGAACATGACCTGTAAAAATCTGTTCTATGAACTTAATTATGCCTAGAGATTAA
Found at i:73743475 original size:78 final size:79
Alignment explanation
Indices: 73743346--73743497 Score: 243
Period size: 78 Copynumber: 1.9 Consensus size: 79
73743336 CCCTTTTCGG
* * *
73743346 GTTTTCAACTCAAACCCCCCTTAGTCTTAAGCTGCCCTTTTCGGGTTTTCACCTTGGCCT-TTCT
1 GTTTTCAACTCAAACCCCCCTTAGTCTCAAGCTGCCCTTTTCGGGTTTTCACCTTGGCCTCTCCC
73743410 TTTTTTTTTATTAT
66 TTTTTTTTTATTAT
* * *
73743424 GTTTTCAACTCAAACCCCCTTTGGTCTCAAGGTGCCCTTTTCGGGTTTTCACCTTGGCCTCTCCC
1 GTTTTCAACTCAAACCCCCCTTAGTCTCAAGCTGCCCTTTTCGGGTTTTCACCTTGGCCTCTCCC
73743489 TTTTTTTTT
66 TTTTTTTTT
73743498 GAAATCAGAG
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
78 56 0.84
79 11 0.16
ACGTcount: A:0.12, C:0.29, G:0.13, T:0.45
Consensus pattern (79 bp):
GTTTTCAACTCAAACCCCCCTTAGTCTCAAGCTGCCCTTTTCGGGTTTTCACCTTGGCCTCTCCC
TTTTTTTTTATTAT
Found at i:73754500 original size:25 final size:25
Alignment explanation
Indices: 73754466--73754520 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 25
73754456 ATAGATTATA
73754466 AAAAATAATTA-TATATAAATAAAAT
1 AAAAATAATTACTATATAAA-AAAAT
73754491 AAAAATAATTACCTTATATAAAAAAAT
1 AAAAATAATTA-C-TATATAAAAAAAT
73754518 AAA
1 AAA
73754521 TATGCGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 11 0.41
27 8 0.30
28 8 0.30
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (25 bp):
AAAAATAATTACTATATAAAAAAAT
Found at i:73760403 original size:42 final size:42
Alignment explanation
Indices: 73760264--73760409 Score: 161
Period size: 42 Copynumber: 3.5 Consensus size: 42
73760254 GTTTCTCGGT
* * * *
73760264 GGAATCAGTACTTAGCAACCACC-TTATATTCAGTGATACGG
1 GGAATCAGCACTTAGCAACCACCTTTACAATCAATGATACGG
* *
73760305 GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCACCTTT-ACAATCAATGATACGG
* * ***
73760347 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTTAG
1 -GGAATCAGCACTTAGCAACCACCTTTACAATCAATGATACGG
73760390 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
73760410 CCTCGAGGAA
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
40 2 0.02
41 20 0.23
42 32 0.36
43 29 0.33
44 5 0.06
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCACCTTTACAATCAATGATACGG
Found at i:73760419 original size:26 final size:26
Alignment explanation
Indices: 73760390--73760464 Score: 123
Period size: 26 Copynumber: 2.9 Consensus size: 26
73760380 AATAATTTAG
*
73760390 GGAATCAGCACTTAGCAACCCCTCGA
1 GGAATCTGCACTTAGCAACCCCTCGA
* *
73760416 GGAATCTGCACCTAGCAACCCCTCGG
1 GGAATCTGCACTTAGCAACCCCTCGA
73760442 GGAATCTGCACTTAGCAACCCCT
1 GGAATCTGCACTTAGCAACCCCT
73760465 ATTTGATCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.36, G:0.20, T:0.17
Consensus pattern (26 bp):
GGAATCTGCACTTAGCAACCCCTCGA
Found at i:73760498 original size:41 final size:41
Alignment explanation
Indices: 73760441--73760629 Score: 279
Period size: 41 Copynumber: 4.6 Consensus size: 41
73760431 CAACCCCTCG
* *
73760441 GGGAATCTGCACTTAGCAACCCCTATTTGATCAGTGATTTA
1 GGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCA
*
73760482 GGGAATCTGCACTTAGCAACCCCTCTTTGATCAGTGATTCA
1 GGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCA
**
73760523 GGGAATCTATACTTAGCAACCCCTTTTTGATCAGTGATTCA
1 GGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCA
* * * *
73760564 AGGAATCTGCACTTAACAACACCTTTTTGATCAGTGATTCG
1 GGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCA
* *
73760605 GGGAATATGCACTTAGCAATCCCTT
1 GGGAATCTGCACTTAGCAACCCCTT
73760630 ACATTCAATG
Statistics
Matches: 132, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 132 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (41 bp):
GGGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCA
Found at i:73760994 original size:30 final size:29
Alignment explanation
Indices: 73760959--73761019 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
73760949 CCTTGACTCG
73760959 AACTTTGACAAAATTACAACTTTT-CCCGTA
1 AACTTTGACAAAATTAC-ACTTTTGCCC-TA
* * *
73760989 AACTTTTACATATTTACACTTTTGCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCTA
73761018 AA
1 AA
73761020 GCTCAGAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (29 bp):
AACTTTGACAAAATTACACTTTTGCCCTA
Found at i:73776165 original size:19 final size:20
Alignment explanation
Indices: 73776141--73776187 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
73776131 TGTGAAAATC
*
73776141 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGCAATG
*
73776160 TAATGCAAATGCATGGAATG
1 TAATGCAAATGCATGCAATG
73776180 -AATGCAAA
1 TAATGCAAA
73776188 AAGAAAGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGCATGCAATG
Found at i:73778224 original size:26 final size:26
Alignment explanation
Indices: 73778143--73778225 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
73778133 AAACAATTCA
* *
73778143 AAAATAAATAATATGC-AA-CAAATAT
1 AAAATAAATAACATACAAAGCAAAT-T
* *
73778168 AAAAAAAATAACGTACAAAGCAAATT
1 AAAATAAATAACATACAAAGCAAATT
* *
73778194 GAAATAAATAACATA-AAAGACAATTT
1 AAAATAAATAACATACAAAG-CAAATT
73778220 AAAATA
1 AAAATA
73778226 GTATATAAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
25 16 0.35
26 25 0.54
27 5 0.11
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.20
Consensus pattern (26 bp):
AAAATAAATAACATACAAAGCAAATT
Found at i:73779276 original size:20 final size:21
Alignment explanation
Indices: 73779237--73779276 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
73779227 TTTCTACTGT
* *
73779237 TTTGCACTGTTTTGCTTCTAC
1 TTTGCACTGTTTGGCCTCTAC
73779258 TTTGCA-TGTTTGGCCTCTA
1 TTTGCACTGTTTGGCCTCTA
73779277 TTTATTTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.10, C:0.23, G:0.17, T:0.50
Consensus pattern (21 bp):
TTTGCACTGTTTGGCCTCTAC
Found at i:73781805 original size:21 final size:21
Alignment explanation
Indices: 73781781--73781844 Score: 58
Period size: 21 Copynumber: 2.9 Consensus size: 21
73781771 TTTTCATTTG
73781781 ATAGTATTTTAAAATTTATAA
1 ATAGTATTTTAAAATTTATAA
* *
73781802 ATAGT-TTCTTAGAGTTTATAA
1 ATAGTATT-TTAAAATTTATAA
*
73781823 ATAAAATATTTTCAAAATTTAT
1 AT--AGTATTTT-AAAATTTAT
73781845 GGTTAAATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 2 0.06
21 18 0.55
23 4 0.12
24 9 0.27
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (21 bp):
ATAGTATTTTAAAATTTATAA
Found at i:73795419 original size:28 final size:28
Alignment explanation
Indices: 73795351--73795600 Score: 385
Period size: 28 Copynumber: 8.9 Consensus size: 28
73795341 CATGAGATTG
* * *
73795351 GCACTAAGTGTGCGGGTTTAAAT-TGTACA
1 GCACTAAGTGTGCGAGTTTGATTATGT--A
*
73795380 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
73795408 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
73795436 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
73795464 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
73795492 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
73795520 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
73795548 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
73795576 GCACTAAGTGTGCGAGTTTGATTAT
1 GCACTAAGTGTGCGAGTTTGATTAT
73795601 CAGAGTGATT
Statistics
Matches: 207, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
28 185 0.89
29 20 0.10
30 2 0.01
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATGTA
Found at i:73805458 original size:24 final size:24
Alignment explanation
Indices: 73805422--73805471 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
73805412 ATAAGATGCT
*
73805422 GACCTTTCCATTGCA-ATCCTTTTC
1 GACCTTTCCATTG-ATATCATTTTC
**
73805446 GACCTTTTTATTGATATCATTTTC
1 GACCTTTCCATTGATATCATTTTC
73805470 GA
1 GA
73805472 ATAACATCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 1 0.05
24 21 0.95
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.46
Consensus pattern (24 bp):
GACCTTTCCATTGATATCATTTTC
Found at i:73805550 original size:33 final size:33
Alignment explanation
Indices: 73805490--73805552 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
73805480 CTTTTCAACC
* *
73805490 TTTTCATTCGATGTCCTTTTTAGATAACATTTT
1 TTTTCATTCGATATCCTTTTGAGATAACATTTT
*
73805523 TTTTCATTTGATATCCTTTTCGA-ATAACAT
1 TTTTCATTCGATATCCTTTT-GAGATAACAT
73805553 CATTTTCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (33 bp):
TTTTCATTCGATATCCTTTTGAGATAACATTTT
Found at i:73819827 original size:44 final size:44
Alignment explanation
Indices: 73819777--73819983 Score: 164
Period size: 44 Copynumber: 4.5 Consensus size: 44
73819767 TCATAGTGAA
*
73819777 TCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGTTACAAG
* * * ** *
73819821 TCTTATCTCTCTGAAGTTGTAATGGAGCAGACTAAAGACATCAAA
1 TCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGTTA-CAAG
* * * * * * *
73819866 TCTTATTTTCCTGAA-TTACAGTGGAACAAATTAAAGCTACAAATTATGGTGG
1 TCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGTTAC--A--A-----G
* *
73819918 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
1 -TCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGTTACAAG
73819963 TCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCA
73819984 GCAGAGCAGA
Statistics
Matches: 125, Mismatches: 26, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
43 1 0.01
44 71 0.57
45 17 0.14
47 1 0.01
50 1 0.01
52 1 0.01
53 13 0.10
54 20 0.16
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGTTACAAG
Found at i:73819984 original size:44 final size:44
Alignment explanation
Indices: 73819919--73820136 Score: 150
Period size: 44 Copynumber: 4.7 Consensus size: 44
73819909 TTATGGTGGA
*
73819919 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACAAG
** * *
73819963 TCTTATCTCCCTGAAGTTGCAGCAGAGCAGACTGAAGACAGCGAA-
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCA-C-AAG
* ** * * *
73820008 TCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-T-C--------ACAAG
** * * *
73820062 TCTTATCTTGCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACAAG
* * *
73820106 CCTTATCTCCTTGAAGTTGCAGTGAAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
73820137 CTAAAACCAC
Statistics
Matches: 130, Mismatches: 31, Indels: 26
0.70 0.17 0.14
Matches are distributed among these distances:
44 63 0.48
45 30 0.23
46 2 0.02
47 1 0.01
52 1 0.01
53 2 0.02
54 30 0.23
55 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTCACAAG
Found at i:73820111 original size:143 final size:142
Alignment explanation
Indices: 73819775--73820141 Score: 466
Period size: 143 Copynumber: 2.6 Consensus size: 142
73819765 CATCATAGTG
* *
73819775 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTGAAGTTACAAGTCTTATCTCTCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTG
* *** * *
73819840 TAATGGAGCAGACTAAAGACATCAAATCTTATTTTCCTGAATTACAGTGGAACAAATTAAAGCTA
66 CAGCAGAGCAGACTAAAGACAGCAAATCTTATTTCCCTGAATTACAGTGGAACAAATTAAAGCTA
***
73819905 CAAATTATGGTG
131 CAAATTATGACA
*
73819917 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTG
* * ** * *
73819982 CAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCT
66 CAGCAGAGCAGACTAAAGACAGCAAATCTTATTTCCCT-GAATTACAGTGGAACAAATTAAAGCT
73820047 ACAAATTATGACA
130 ACAAATTATGACA
** * ** * * *
73820060 AATCTTATCTTGCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCTTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTG
*
73820125 CAG-TGAAGCAGACTAAA
66 CAGCAG-AGCAGACTAAA
73820142 ACCACAAGTC
Statistics
Matches: 194, Mismatches: 29, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
142 93 0.48
143 101 0.52
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (142 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAGTCTTATCTCCCTGAAGTTG
CAGCAGAGCAGACTAAAGACAGCAAATCTTATTTCCCTGAATTACAGTGGAACAAATTAAAGCTA
CAAATTATGACA
Found at i:73821765 original size:15 final size:15
Alignment explanation
Indices: 73821745--73821784 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
73821735 CTTACTTAAA
73821745 TATTTTATATACATT
1 TATTTTATATACATT
*
73821760 TATTTTATCATCCATT
1 TATTTTAT-ATACATT
73821776 TA-TTTATAT
1 TATTTTATAT
73821785 CCTTTTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 2 0.09
15 13 0.57
16 8 0.35
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTTTATATACATT
Found at i:73821777 original size:16 final size:16
Alignment explanation
Indices: 73821745--73821785 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
73821735 CTTACTTAAA
73821745 TATTTTAT-ATACATT
1 TATTTTATCATACATT
*
73821760 TATTTTATCATCCATT
1 TATTTTATCATACATT
73821776 TATTTATATC
1 TATTT-TATC
73821786 CTTTTATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.35
16 11 0.48
17 4 0.17
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTTTATCATACATT
Found at i:73821945 original size:22 final size:22
Alignment explanation
Indices: 73821900--73821946 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
73821890 TTGTTCACTA
*
73821900 TTAGTTTTTTTATTTTTATATT
1 TTAGTTTTTTTATTATTATATT
*
73821922 TTAGTTTTTTTACTTATTATTTT
1 TTAGTTTTTTTA-TTATTATATT
73821945 TT
1 TT
73821947 TATTAGCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (22 bp):
TTAGTTTTTTTATTATTATATT
Found at i:73823300 original size:16 final size:16
Alignment explanation
Indices: 73823269--73823305 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
73823259 ATATGAAGAA
73823269 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
73823285 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
73823301 TATTA
1 TATTA
73823306 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:73826200 original size:23 final size:23
Alignment explanation
Indices: 73826174--73826222 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
73826164 GAAATCTAAA
73826174 AAAATCAAATC-TCTAAGATTTAC
1 AAAATCAAATCTTCTAAGA-TTAC
73826197 AAAATCAAATCTTCTAAGATTAC
1 AAAATCAAATCTTCTAAGATTAC
73826220 AAA
1 AAA
73826223 TCCTCTAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 18 0.72
24 7 0.28
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.29
Consensus pattern (23 bp):
AAAATCAAATCTTCTAAGATTAC
Found at i:73828442 original size:11 final size:11
Alignment explanation
Indices: 73828426--73828455 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
73828416 CTAGGAACCT
73828426 ATGTGAAAACA
1 ATGTGAAAACA
*
73828437 ATGTGAAAACT
1 ATGTGAAAACA
73828448 ATGTGAAA
1 ATGTGAAA
73828456 TTGTGACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.20, T:0.23
Consensus pattern (11 bp):
ATGTGAAAACA
Found at i:73838794 original size:50 final size:50
Alignment explanation
Indices: 73838667--73838913 Score: 239
Period size: 50 Copynumber: 4.8 Consensus size: 50
73838657 AATAATAACA
* * ** * * *
73838667 TGCCAAAGCCATGTCCCAGACATGGTCTTATATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * **
73838716 TGCCAATGTCATATCCCAGAAATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
** *
73838766 TGCTC-ATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGC-CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
73838816 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
*
73838872 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
73838914 TTACCCAAAT
Statistics
Matches: 163, Mismatches: 25, Indels: 13
0.81 0.12 0.06
Matches are distributed among these distances:
48 1 0.01
49 38 0.23
50 80 0.49
51 1 0.01
53 2 0.01
56 41 0.25
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:73845140 original size:50 final size:49
Alignment explanation
Indices: 73845075--73845207 Score: 151
Period size: 50 Copynumber: 2.7 Consensus size: 49
73845065 CAATGCCATA
* **
73845075 TCCCAGAAATGGTCTTACATGGGAGTTCTCATATCGGTGCTC-CTGACATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGC-CAC-GACATG
* ** * *
73845125 TCCCAGACATAGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCC-ACGACATG
*
73845175 TCCCAAACATGGTCTTACATGGGACCTCTCATA
1 TCCCAGACATGGTCTTACATGGGACCTCTCATA
73845208 ATCTCAATGA
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
49 1 0.01
50 66 0.97
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (49 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCACGACATG
Found at i:73849123 original size:84 final size:84
Alignment explanation
Indices: 73849019--73849229 Score: 377
Period size: 84 Copynumber: 2.5 Consensus size: 84
73849009 CAAAGGATCC
*
73849019 CGGTGGAATCAGCACTTAGCAATCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
73849084 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
73849103 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
* *
73849168 CCTTTCACAATTAGGGATA
66 CCTTTCACAATCAAGGATA
* *
73849187 CGGTGAAATCAGCACTTAGCAACCACCTTATAATTAATGATAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC
73849230 CGGTTCACGT
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 122 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.22
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAGGATA
Found at i:73849138 original size:42 final size:42
Alignment explanation
Indices: 73848978--73849229 Score: 269
Period size: 42 Copynumber: 6.0 Consensus size: 42
73848968 CGTTACACGA
* * ** *
73848978 TGGAATCAACACTTAGCAACCACCTCATGTTCAAAGGATCCCGG
1 TGGAATCAGCACTTAGCAACCACCTTATAATC-AAGGAT-ACGG
* *
73849022 TGGAATCAGCACTTAGCAATCACCTTATAATCAATGATACGG
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAAGGATACGG
* *
73849064 -GGAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGG
1 TGGAATCAGCACTTAGCAACCACC-TT-ATAATCAAGGATACGG
*
73849106 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGG
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAAGGATACGG
* * * *
73849148 -GGAATCAGCACATAGCAACC-CCTTTCACAATTAGGGATACGG
1 TGGAATCAGCACTTAGCAACCACC-TT-ATAATCAAGGATACGG
* * *
73849190 TGAAATCAGCACTTAGCAACCACCTTATAATTAATGATAC
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAAGGATAC
73849230 CGGTTCACGT
Statistics
Matches: 176, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
40 4 0.02
41 41 0.23
42 54 0.31
43 46 0.26
44 31 0.18
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.22
Consensus pattern (42 bp):
TGGAATCAGCACTTAGCAACCACCTTATAATCAAGGATACGG
Found at i:73849358 original size:50 final size:49
Alignment explanation
Indices: 73849229--73849376 Score: 154
Period size: 50 Copynumber: 3.0 Consensus size: 49
73849219 ATTAATGATA
* * *
73849229 CCGGTTCACGTAGTAGCCTGCACATAGTACTACACATGTGATCGAAGCTATT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-C-CATC-ATT
** * *
73849281 -CGGTATGCATAGTAGCCTGTACATAGTACTACACATGTGACCTATCATT
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-ATCATT
* * * *
73849330 CCGGTACACGTAGTCGCCTGCACCTAGTACCACACACGTGACCATCA
1 CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA
73849377 CTTTCACTTT
Statistics
Matches: 79, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
49 7 0.09
50 37 0.47
51 35 0.44
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (49 bp):
CCGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCATT
Found at i:73850567 original size:304 final size:304
Alignment explanation
Indices: 73850018--73850626 Score: 1218
Period size: 304 Copynumber: 2.0 Consensus size: 304
73850008 ACTATGGAGC
73850018 TTGGAAGCTTGAAAACCCTAACAATGGCTTCTCCCCTTGTGAAATTCGGCAAAGGCTTGAAGATG
1 TTGGAAGCTTGAAAACCCTAACAATGGCTTCTCCCCTTGTGAAATTCGGCAAAGGCTTGAAGATG
73850083 ATGATTTTTGGCCTATTTTGTCTTTTTAATACATTTTAATTACCAAATTACCAAAATACCCCTAA
66 ATGATTTTTGGCCTATTTTGTCTTTTTAATACATTTTAATTACCAAATTACCAAAATACCCCTAA
73850148 CTTAAAATTTTCTTTTTTCACTTATCTCATGTCCATTTTTGTCCACAATGTAAACAATGGTCTAA
131 CTTAAAATTTTCTTTTTTCACTTATCTCATGTCCATTTTTGTCCACAATGTAAACAATGGTCTAA
73850213 TTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAATTAGACACTTCTAACATGTAGAACTC
196 TTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAATTAGACACTTCTAACATGTAGAACTC
73850278 AACTTTTGCACTTTTTACAATTTAGTCCTTTTGACTAAATTGAG
261 AACTTTTGCACTTTTTACAATTTAGTCCTTTTGACTAAATTGAG
73850322 TTGGAAGCTTGAAAACCCTAACAATGGCTTCTCCCCTTGTGAAATTCGGCAAAGGCTTGAAGATG
1 TTGGAAGCTTGAAAACCCTAACAATGGCTTCTCCCCTTGTGAAATTCGGCAAAGGCTTGAAGATG
73850387 ATGATTTTTGGCCTATTTTGTCTTTTTAATACATTTTAATTACCAAATTACCAAAATACCCCTAA
66 ATGATTTTTGGCCTATTTTGTCTTTTTAATACATTTTAATTACCAAATTACCAAAATACCCCTAA
73850452 CTTAAAATTTTCTTTTTTCACTTATCTCATGTCCATTTTTGTCCACAATGTAAACAATGGTCTAA
131 CTTAAAATTTTCTTTTTTCACTTATCTCATGTCCATTTTTGTCCACAATGTAAACAATGGTCTAA
73850517 TTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAATTAGACACTTCTAACATGTAGAACTC
196 TTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAATTAGACACTTCTAACATGTAGAACTC
73850582 AACTTTTGCACTTTTTACAATTTAGTCCTTTTGACTAAATTGAG
261 AACTTTTGCACTTTTTACAATTTAGTCCTTTTGACTAAATTGAG
73850626 T
1 T
73850627 GCCCAAACGT
Statistics
Matches: 305, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
304 305 1.00
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (304 bp):
TTGGAAGCTTGAAAACCCTAACAATGGCTTCTCCCCTTGTGAAATTCGGCAAAGGCTTGAAGATG
ATGATTTTTGGCCTATTTTGTCTTTTTAATACATTTTAATTACCAAATTACCAAAATACCCCTAA
CTTAAAATTTTCTTTTTTCACTTATCTCATGTCCATTTTTGTCCACAATGTAAACAATGGTCTAA
TTACCATTTAAGGACCTCCAATTTAAAATTTCATAACAATTAGACACTTCTAACATGTAGAACTC
AACTTTTGCACTTTTTACAATTTAGTCCTTTTGACTAAATTGAG
Found at i:73852297 original size:33 final size:33
Alignment explanation
Indices: 73852259--73852325 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
73852249 CAACAAATTC
*
73852259 AATTAATGGCTCCAACAAACCCTTCAAGAAATA
1 AATTAATGGCTCCAACAAACCCTCCAAGAAATA
73852292 AATTAATGGCTCCAACAAACCCTCCAAGAAATA
1 AATTAATGGCTCCAACAAACCCTCCAAGAAATA
73852325 A
1 A
73852326 TCCTTGGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.46, C:0.25, G:0.09, T:0.19
Consensus pattern (33 bp):
AATTAATGGCTCCAACAAACCCTCCAAGAAATA
Found at i:73860100 original size:25 final size:25
Alignment explanation
Indices: 73860066--73860135 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 25
73860056 ACTAAAAGTG
*
73860066 CTATAGATAGTATATACTGAAACCA
1 CTATAGATAGTATATACTGAAAACA
*
73860091 CTATAGATAG-ACTATACTAAAAACA
1 CTATAGATAGTA-TATACTGAAAACA
* *
73860116 CT-CAGATTAGTATACACTGA
1 CTATAGA-TAGTATATACTGA
73860136 TACTGTGGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
24 4 0.11
25 32 0.86
26 1 0.03
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.27
Consensus pattern (25 bp):
CTATAGATAGTATATACTGAAAACA
Found at i:73863757 original size:24 final size:24
Alignment explanation
Indices: 73863720--73863774 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
73863710 CCTAAATAAT
**
73863720 TTAAAATACTTAAAAAATTAAAA-A
1 TTAAAATAAATAAAAAA-TAAAATA
*
73863744 TTAAAATAAATAAATAATAAAATA
1 TTAAAATAAATAAAAAATAAAATA
*
73863768 ATAAAAT
1 TTAAAAT
73863775 CTAATAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAATAAATAAAAAATAAAATA
Found at i:73866234 original size:10 final size:10
Alignment explanation
Indices: 73866221--73866273 Score: 56
Period size: 10 Copynumber: 5.2 Consensus size: 10
73866211 AATATTTAAT
73866221 ATTTAATATA
1 ATTTAATATA
73866231 ATTTAATATA
1 ATTTAATATA
*
73866241 ATGATAA-ATGA
1 AT-TTAATAT-A
73866252 TATTTAA-ATA
1 -ATTTAATATA
73866262 ATTTAATATA
1 ATTTAATATA
73866272 AT
1 AT
73866274 GATATATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 6 0.16
10 20 0.54
11 9 0.24
12 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (10 bp):
ATTTAATATA
Found at i:73866241 original size:32 final size:31
Alignment explanation
Indices: 73866172--73866282 Score: 123
Period size: 31 Copynumber: 3.4 Consensus size: 31
73866162 TTTGTAAAAT
* *
73866172 TAATGATATATAAAATATTTTTAAAAAATTAAATA
1 TAATGATATAT--AATA--TTTAAATAATTTAATA
* *
73866207 TAATAATATTTAATATTTAATATAATTTAATA
1 TAATGATATATAATATTTAA-ATAATTTAATA
* *
73866239 TAATGATAAATGATATTTAAATAATTTAATA
1 TAATGATATATAATATTTAAATAATTTAATA
73866270 TAATGATATATAA
1 TAATGATATATAA
73866283 AATATAATTA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
31 27 0.42
32 25 0.38
33 4 0.06
35 9 0.14
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (31 bp):
TAATGATATATAATATTTAAATAATTTAATA
Found at i:73866293 original size:26 final size:24
Alignment explanation
Indices: 73866235--73866293 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
73866225 AATATAATTT
* *
73866235 AATATAA-TGATAAATGATATTTA
1 AATATAATTAATAAATGATATTAA
*
73866258 AATA-ATTTAATATAATGATATATAA
1 AATATAATTAATA-AATGATAT-TAA
73866283 AATATAATTAA
1 AATATAATTAA
73866294 GCTAATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
22 1 0.04
23 8 0.29
24 8 0.29
25 6 0.21
26 5 0.18
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (24 bp):
AATATAATTAATAAATGATATTAA
Found at i:73877503 original size:17 final size:17
Alignment explanation
Indices: 73877471--73877502 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
73877461 ACTCACAACT
73877471 AAAATTAAAAATAAAAG
1 AAAATTAAAAATAAAAG
73877488 AAAA-TAAAAATAAAA
1 AAAATTAAAAATAAAA
73877503 AATAAGACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.16
Consensus pattern (17 bp):
AAAATTAAAAATAAAAG
Found at i:73882801 original size:25 final size:25
Alignment explanation
Indices: 73882767--73882827 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
73882757 ACAAATGTGC
* *
73882767 TAATCTGAGAGCATTAACGTACCAA
1 TAATCAGAGAGCACTAACGTACCAA
* * * *
73882792 TAATCAGAGAGCACTGATGTGCTAA
1 TAATCAGAGAGCACTAACGTACCAA
73882817 TAATCAGAGAG
1 TAATCAGAGAG
73882828 GGCACTAAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (25 bp):
TAATCAGAGAGCACTAACGTACCAA
Found at i:73883898 original size:5 final size:5
Alignment explanation
Indices: 73883886--73883939 Score: 101
Period size: 5 Copynumber: 11.0 Consensus size: 5
73883876 AAAAGTTAAG
73883886 TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
73883935 TATAT
1 TATAT
73883940 AAGAAATAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.08
5 45 0.92
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:73884952 original size:22 final size:22
Alignment explanation
Indices: 73884926--73885040 Score: 88
Period size: 22 Copynumber: 5.1 Consensus size: 22
73884916 CTCTTTGATA
* *
73884926 TTTAGCATGTCGGTGCTCTCTG
1 TTTAGCATATCAGTGCTCTCTG
* * *
73884948 TTTAGGACATCTGTGCTCTCTG
1 TTTAGCATATCAGTGCTCTCTG
* *
73884970 ATATTTAGCATGTCAATGCTCTCTG
1 ---TTTAGCATATCAGTGCTCTCTG
* * *
73884995 TTTAGCACATCTGTGCTCTCTA
1 TTTAGCATATCAGTGCTCTCTG
*
73885017 TATAGCACT-TCAGTGCTCTCTG
1 TTTAGCA-TATCAGTGCTCTCTG
73885039 TT
1 TT
73885041 CATTAGTGCA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
22 53 0.76
25 17 0.24
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.41
Consensus pattern (22 bp):
TTTAGCATATCAGTGCTCTCTG
Found at i:73884990 original size:47 final size:47
Alignment explanation
Indices: 73884915--73885040 Score: 179
Period size: 47 Copynumber: 2.7 Consensus size: 47
73884905 ACTCTAGCGC
* * *
73884915 GCTCTTTGATATTTAGCATGTCGGTGCTCTCTGTTTAGGACATCTGT
1 GCTCTCTGATATTTAGCATGTCAGTGCTCTCTGTTTAGCACATCTGT
*
73884962 GCTCTCTGATATTTAGCATGTCAATGCTCTCTGTTTAGCACATCTGT
1 GCTCTCTGATATTTAGCATGTCAGTGCTCTCTGTTTAGCACATCTGT
73885009 GCTCTCT-ATA--TAGCACT-TCAGTGCTCTCTGTT
1 GCTCTCTGATATTTAGCA-TGTCAGTGCTCTCTGTT
73885041 CATTAGTGCA
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
44 19 0.26
45 1 0.01
46 3 0.04
47 50 0.68
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.41
Consensus pattern (47 bp):
GCTCTCTGATATTTAGCATGTCAGTGCTCTCTGTTTAGCACATCTGT
Found at i:73887071 original size:18 final size:19
Alignment explanation
Indices: 73887020--73887073 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 19
73887010 TTTACCTATT
* *
73887020 AAATTCTTTTAAAATCACA
1 AAATTCTTCTAAATTCACA
*
73887039 AAATTC-ACT-AATTCA-A
1 AAATTCTTCTAAATTCACA
73887055 AAATTCTTCTAAATTCACA
1 AAATTCTTCTAAATTCACA
73887074 CTTGACCCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
16 7 0.25
17 7 0.25
18 7 0.25
19 7 0.25
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (19 bp):
AAATTCTTCTAAATTCACA
Found at i:73888820 original size:18 final size:18
Alignment explanation
Indices: 73888783--73888821 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
73888773 ATTGTTTCTC
* *
73888783 AAAAAAACTTTTGGATAA
1 AAAAAAACTTTTGAACAA
73888801 AAAAAAACTTTTGAACAA
1 AAAAAAACTTTTGAACAA
73888819 AAA
1 AAA
73888822 CTAAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (18 bp):
AAAAAAACTTTTGAACAA
Found at i:73888945 original size:17 final size:17
Alignment explanation
Indices: 73888914--73888960 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
73888904 TAAAATCATC
*
73888914 TTATTT-AATAATATTT
1 TTATTTCAAAAATATTT
73888930 TTATTTCAAAAATATTT
1 TTATTTCAAAAATATTT
*
73888947 TTATCTCAAAAATA
1 TTATTTCAAAAATA
73888961 CATTTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
16 6 0.21
17 22 0.79
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATTTCAAAAATATTT
Found at i:73888966 original size:18 final size:17
Alignment explanation
Indices: 73888923--73888967 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
73888913 CTTATTTAAT
* *
73888923 AATATTTTTATTTCAAA
1 AATAATTTTATCTCAAA
*
73888940 AATATTTTTATCTCAAA
1 AATAATTTTATCTCAAA
73888957 AATACATTTTA
1 AATA-ATTTTA
73888968 AAAAGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.42, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATAATTTTATCTCAAA
Done.