Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 239 of 313
Found at i:73892986 original size:15 final size:15
Alignment explanation
Indices: 73892941--73893048 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
73892931 CCAATATCTC
73892941 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
73892956 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
73892971 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
73892986 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
73893001 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
73893016 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
73893031 GATACCCATATCTTT
1 GATACCCATATCTTT
73893046 GAT
1 GAT
73893049 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:73893055 original size:30 final size:30
Alignment explanation
Indices: 73892931--73893054 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
73892921 TTTTATTATG
*
73892931 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
73892962 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
73892992 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
73893022 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
73893052 CCA
1 CCA
73893055 TAAATATGGA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 83 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:73897669 original size:30 final size:30
Alignment explanation
Indices: 73897623--73897716 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
73897613 TTTTATTATG
*
73897623 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
73897654 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
73897684 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
73897714 CCA
1 CCA
73897717 TAAATATGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
30 51 0.88
31 7 0.12
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:73897678 original size:15 final size:15
Alignment explanation
Indices: 73897633--73897710 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
73897623 CCAATATCTC
73897633 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
73897648 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
73897663 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
73897678 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
73897693 GATACCCATATCTTT
1 GATACCCATATCTTT
73897708 GAT
1 GAT
73897711 TTTCCATAAA
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.26, C:0.22, G:0.08, T:0.45
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:73898473 original size:27 final size:27
Alignment explanation
Indices: 73898431--73898486 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
73898421 GCAGCAGTGG
* *
73898431 CGCCCCTCGCGGTCCCTCCGCATGTGA
1 CGCCCCTCGCGCTCCCTCCGCACGTGA
*
73898458 CGCCCCTCGCTCTCCCTCCGCACGTGA
1 CGCCCCTCGCGCTCCCTCCGCACGTGA
73898485 CG
1 CG
73898487 AGCCCTCGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.07, C:0.52, G:0.23, T:0.18
Consensus pattern (27 bp):
CGCCCCTCGCGCTCCCTCCGCACGTGA
Found at i:73902252 original size:12 final size:12
Alignment explanation
Indices: 73902237--73902261 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73902227 AATTTTTTTT
73902237 TATAATTTTAAA
1 TATAATTTTAAA
73902249 TATAATTTTAAA
1 TATAATTTTAAA
73902261 T
1 T
73902262 TTTTATGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TATAATTTTAAA
Found at i:73904442 original size:31 final size:31
Alignment explanation
Indices: 73904404--73904466 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
73904394 AATAACATAT
73904404 AATATATCAATAGTGCGTTGTATCTTATGGC
1 AATATATCAATAGTGCGTTGTATCTTATGGC
73904435 AATATATCAATAGTGCGTTGTATCTTATGGC
1 AATATATCAATAGTGCGTTGTATCTTATGGC
73904466 A
1 A
73904467 TGCCAACTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (31 bp):
AATATATCAATAGTGCGTTGTATCTTATGGC
Found at i:73905834 original size:12 final size:10
Alignment explanation
Indices: 73905801--73905850 Score: 66
Period size: 10 Copynumber: 4.8 Consensus size: 10
73905791 TTCAATTTTT
73905801 AAATATTAAA
1 AAATATTAAA
73905811 AAATATTAAA
1 AAATATTAAA
73905821 AAATATTAATAA
1 AAATATT-A-AA
73905833 AAATATTAATA
1 AAATATTAA-A
73905844 AAA-ATTA
1 AAATATTA
73905851 TTTCTTGAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
10 22 0.59
11 6 0.16
12 9 0.24
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (10 bp):
AAATATTAAA
Found at i:73905835 original size:13 final size:13
Alignment explanation
Indices: 73905817--73905852 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
73905807 TAAAAAATAT
73905817 TAAAAAATATTAA
1 TAAAAAATATTAA
73905830 T-AAAAATATTAA
1 TAAAAAATATTAA
*
73905842 TAAAAATTATT
1 TAAAAAATATT
73905853 TCTTGAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.57
13 9 0.43
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAAAAATATTAA
Found at i:73905837 original size:22 final size:22
Alignment explanation
Indices: 73905801--73905850 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
73905791 TTCAATTTTT
73905801 AAATATT-AAAAAATATTAA-A
1 AAATATTAAAAAAATATTAATA
73905821 AAATATTAATAAAAATATTAATA
1 AAATATTAA-AAAAATATTAATA
73905844 AAA-ATTA
1 AAATATTA
73905851 TTTCTTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.26
21 1 0.04
22 15 0.56
23 4 0.15
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
AAATATTAAAAAAATATTAATA
Found at i:73905986 original size:7 final size:7
Alignment explanation
Indices: 73905974--73906008 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
73905964 AATAGTTATA
73905974 AAAAATT
1 AAAAATT
73905981 AAAAATT
1 AAAAATT
73905988 AAAAATT
1 AAAAATT
73905995 AAAAATT
1 AAAAATT
73906002 AAAAATT
1 AAAAATT
73906009 TCAAATTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAAATT
Found at i:73907557 original size:3 final size:3
Alignment explanation
Indices: 73907549--73907610 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
73907539 GTATTATCAT
* *
73907549 TTA TTA TTA TTA TT- TCTA TTA TTA TTA TTA TGTA -TA TTA CTG TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
73907594 CTTA TCA TTA TTA TTA T
1 -TTA TTA TTA TTA TTA T
73907611 GTGATAGCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
2 3 0.06
3 39 0.81
4 6 0.12
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:73907675 original size:16 final size:17
Alignment explanation
Indices: 73907648--73907683 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
73907638 TTTTCTAACC
73907648 TATTTAATATATATAAA
1 TATTTAATATATATAAA
73907665 TATTT-ATATATATAAA
1 TATTTAATATATATAAA
73907681 TAT
1 TAT
73907684 CTATGTGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTTAATATATATAAA
Found at i:73907774 original size:26 final size:26
Alignment explanation
Indices: 73907716--73907775 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
73907706 ATATGTATAT
* *
73907716 ATATTTATATATATATAGTTTCTTTT
1 ATATTTATATATATATAGTTTATTTC
*
73907742 ATATTTATATATATATTATTTTATTTC
1 ATATTTATATATATA-TAGTTTATTTC
73907769 AT-TTTAT
1 ATATTTAT
73907776 TTTTTATATC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (26 bp):
ATATTTATATATATATAGTTTATTTC
Found at i:73909871 original size:8 final size:8
Alignment explanation
Indices: 73909826--73909864 Score: 60
Period size: 8 Copynumber: 4.6 Consensus size: 8
73909816 TTTGAGTAAA
73909826 AAAAAGATG
1 AAAAA-ATG
73909835 AAAAAAATG
1 -AAAAAATG
73909844 AAAAAATG
1 AAAAAATG
73909852 AAAAAATG
1 AAAAAATG
73909860 AAAAA
1 AAAAA
73909865 GTAAAAATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 21 0.72
9 3 0.10
10 5 0.17
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:73909871 original size:16 final size:16
Alignment explanation
Indices: 73909835--73909871 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
73909825 AAAAAAGATG
73909835 AAAAAAATGAAAAAAT
1 AAAAAAATGAAAAAAT
* *
73909851 GAAAAAATGAAAAAGT
1 AAAAAAATGAAAAAAT
73909867 AAAAA
1 AAAAA
73909872 TGGAGAGGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (16 bp):
AAAAAAATGAAAAAAT
Found at i:73911146 original size:45 final size:45
Alignment explanation
Indices: 73911065--73911158 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
73911055 CAGATCAATG
* * *
73911065 AAGACATCAAATCTTGCTTTCCTGTACTGACTGTGAAGCAGATCA
1 AAGACAACAAATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCA
* * * *
73911110 AAGACAACAGATCTTGCCTTCCTG-CCTTGACAGTGAAGCATATCG
1 AAGACAACAAATCTTGCCTTCCTGTAC-TGACAGTGAAGCAGATCA
73911155 AAGA
1 AAGA
73911159 TACAAGCTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (45 bp):
AAGACAACAAATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCA
Found at i:73911617 original size:88 final size:88
Alignment explanation
Indices: 73911507--73912979 Score: 2019
Period size: 88 Copynumber: 16.9 Consensus size: 88
73911497 AGATCATGTC
** **
73911507 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73911572 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73911595 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73911660 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73911683 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73911748 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73911771 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73911836 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73911859 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73911924 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73911947 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73912012 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73912035 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73912100 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73912123 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73912188 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73912211 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73912276 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73912299 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
73912364 ACAGTGGAGCGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
73912387 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
*
73912452 ACAGTGGAGCGAATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
* * * * * * * * * * *
73912475 GGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG--GTCTTATTTCCCTGAGAT
1 AGATCTTATCTCCCTGAGA-TTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATAT
* * * ** ****
73912536 TATAGTGGAACAGACCGAAGAATTTC
65 TACAGTGGAGCGGA-TTAA-AACCAA
* *
73912562 AGATCTTATCGCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
*
73912627 ACAGTGGAGCGAATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
* * * * * * * * * *
73912650 GGATCTTATCTCTCTGA-AGTTGCAGTAGAGTAGATCGTA-CTAG--GTCTTATCTCCCTGAGAT
1 AGATCTTATCTCCCTGAGA-TTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATAT
* * * * *
73912711 TACAGTGGAGCAGATCAAAGCTAGT
65 TACAGTGGAGCGGATTAAAACCA-A
* * * ** ** * * * * * *
73912736 A-ATCCTATCTCCTTGATATTACAGTGGAGTGGATTAAAACCAAG-GATCTTATCTCTCTGA-AG
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATT-GAAGCTAGTAATCCTATCTCCCTGATA-
* * ** *** *
73912798 TTGCAGTAGAGTAGA-TCGTA-C-T
64 TTACAGTGGAGCGGATTAAAACCAA
* ** ** *
73912820 AGGTCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGCTAGTAATCCTATCTCCTTGATATT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
*
73912885 ACAGTGGAGTGGATTAAAACCAA
66 ACAGTGGAGCGGATTAAAACCAA
* * * * * * * * * *
73912908 GGATCTTATCTCTCTGA-AGTTGCAGTAGAGTAGATCGTA-CTAG--GTCTTATCTCCCTGAGAT
1 AGATCTTATCTCCCTGAGA-TTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATAT
73912969 TACAGTGGAGC
65 TACAGTGGAGC
73912980 AGATCAAAGC
Statistics
Matches: 1242, Mismatches: 122, Indels: 45
0.88 0.09 0.03
Matches are distributed among these distances:
84 8 0.01
85 157 0.13
86 7 0.01
87 50 0.04
88 994 0.80
89 2 0.00
90 24 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (88 bp):
AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATT
ACAGTGGAGCGGATTAAAACCAA
Found at i:73915668 original size:49 final size:49
Alignment explanation
Indices: 73915598--73916118 Score: 928
Period size: 49 Copynumber: 10.8 Consensus size: 49
73915588 ATGATAGTAT
73915598 ATGTGAT--ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
73915645 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
73915694 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
73915743 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
73915792 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
73915841 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
73915890 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
73915939 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
73915988 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
73916037 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
73916084 ACGTGATGGATGTGAAAATGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
73916119 TCCCGAAGGG
Statistics
Matches: 460, Mismatches: 10, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
47 54 0.12
48 1 0.00
49 405 0.88
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:73918319 original size:120 final size:121
Alignment explanation
Indices: 73918103--73918379 Score: 310
Period size: 120 Copynumber: 2.3 Consensus size: 121
73918093 TCGAATGATG
**
73918103 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
* * ** * *
73918166 TTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
65 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
* ** * *
73918223 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAG-GCAT
* * * * * *
73918287 TCGTGCTAGTGA-TATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGCGTTATA
65 TCGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
* * *
73918343 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
73918380 GTGTATTCGG
Statistics
Matches: 130, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
120 104 0.80
121 20 0.15
122 6 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTGACTAAATCCGGGCTAAACCCCGAAGAGCATTCATGCTAGCGATATA
Found at i:73918343 original size:40 final size:40
Alignment explanation
Indices: 73918103--73918378 Score: 272
Period size: 40 Copynumber: 6.9 Consensus size: 40
73918093 TCGAATGATG
** *
73918103 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
73918143 TCCGGACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
73918183 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
73918223 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
73918263 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
73918303 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGCGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
73918343 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
73918379 CGTGTATTCG
Statistics
Matches: 200, Mismatches: 32, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
39 1 0.00
40 179 0.89
41 20 0.10
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:73923718 original size:18 final size:19
Alignment explanation
Indices: 73923695--73923730 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73923685 ATTGTTGTGA
73923695 TCTATTGCGT-TTTAATTT
1 TCTATTGCGTGTTTAATTT
*
73923713 TCTATTTCGTGTTTAATT
1 TCTATTGCGTGTTTAATT
73923731 GATAGATTCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.61
Consensus pattern (19 bp):
TCTATTGCGTGTTTAATTT
Found at i:73926838 original size:13 final size:13
Alignment explanation
Indices: 73926819--73926867 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
73926809 ATATACTTCG
73926819 ATTTTTTTTTT-A
1 ATTTTTTTTTTAA
**
73926831 ATTTTTTTTTTCG
1 ATTTTTTTTTTAA
*
73926844 ATTTTTTTTTCAA
1 ATTTTTTTTTTAA
73926857 ATTTTTTTTTT
1 ATTTTTTTTTT
73926868 CGAATTTCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
12 11 0.35
13 20 0.65
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (13 bp):
ATTTTTTTTTTAA
Found at i:73926843 original size:25 final size:26
Alignment explanation
Indices: 73926815--73926870 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
73926805 TTTTATATAC
*
73926815 TTCGATTTTTTTTT-TAATTTTTTTT
1 TTCGATTTTTTTTTCAAATTTTTTTT
73926840 TTCGATTTTTTTTTCAAATTTTTTTT
1 TTCGATTTTTTTTTCAAATTTTTTTT
73926866 TTCGA
1 TTCGA
73926871 ATTTCTTCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.73
Consensus pattern (26 bp):
TTCGATTTTTTTTTCAAATTTTTTTT
Found at i:73928683 original size:14 final size:14
Alignment explanation
Indices: 73928659--73928695 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
73928649 TATGCAATTT
73928659 TTTTCTTTTTTTCAA
1 TTTT-TTTTTTTCAA
73928674 -TTTTTTTTTTCAA
1 TTTTTTTTTTTCAA
73928687 TTTTTTTTT
1 TTTTTTTTT
73928696 CGATCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTTTTTTTTCAA
Found at i:73928696 original size:12 final size:13
Alignment explanation
Indices: 73928664--73928695 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
73928654 AATTTTTTTC
73928664 TTTTTTTCAATTT
1 TTTTTTTCAATTT
73928677 TTTTTTTCAATTT
1 TTTTTTTCAATTT
73928690 TTTTTT
1 TTTTTT
73928696 CGATCTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTCAATTT
Found at i:73935135 original size:30 final size:30
Alignment explanation
Indices: 73935101--73935197 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
73935091 TAAACTAAAA
*
73935101 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
73935131 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
73935161 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
73935190 ATGAGCTA
1 -TGAGCTA
73935198 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:73937387 original size:12 final size:12
Alignment explanation
Indices: 73937372--73937402 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
73937362 TTCTTTTTGC
73937372 TTTTCAAAGGCT
1 TTTTCAAAGGCT
73937384 TTTTCAAAGGCT
1 TTTTCAAAGGCT
73937396 TTTTCAA
1 TTTTCAA
73937403 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:73937479 original size:6 final size:6
Alignment explanation
Indices: 73937463--73937512 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
73937453 TTTCTTTTTA
*
73937463 TTTCAT TTTCTT TTTCTT CTCTTGCTT TTTCTT TTTC-T TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTCTT -T-TT-CTT TTTCTT TTTCTT TTTCTT TTTCTT
73937512 T
1 T
73937513 GTTTTCTCTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
5 10 0.26
6 20 0.51
7 3 0.08
8 3 0.08
9 3 0.08
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTCTT
Found at i:73937495 original size:37 final size:37
Alignment explanation
Indices: 73937452--73937522 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 37
73937442 CTTGCCTCTC
73937452 TTTTCTTTTT-ATTTCATTTTCTTT-TTCTTCTCTTGCT
1 TTTTCTTTTTCATTTC-TTTTCTTTGTT-TTCTCTTGCT
*
73937489 TTTTCTTTTTCTTTTCTTTTCTTTGTTTTCTCTT
1 TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTT
73937523 TACAAGAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 25 0.81
38 6 0.19
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (37 bp):
TTTTCTTTTTCATTTCTTTTCTTTGTTTTCTCTTGCT
Found at i:73937523 original size:16 final size:16
Alignment explanation
Indices: 73937448--73937508 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
73937438 GCCTCTTGCC
*
73937448 TCTCTTTTCTTTTTAT
1 TCTCTTTTCTTTTTCT
73937464 T-TCATTTTCTTTTTCT
1 TCTC-TTTTCTTTTTCT
*
73937480 TCTC-TTGCTTTTTCTT
1 TCTCTTTTCTTTTTC-T
*
73937496 TTTCTTTTCTTTT
1 TCTCTTTTCTTTT
73937509 CTTTGTTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.30
16 17 0.46
17 9 0.24
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.75
Consensus pattern (16 bp):
TCTCTTTTCTTTTTCT
Found at i:73938462 original size:10 final size:11
Alignment explanation
Indices: 73938438--73938491 Score: 56
Period size: 12 Copynumber: 4.8 Consensus size: 11
73938428 TTAACTCGAT
73938438 TTTTTTTGTCAC
1 TTTTTTT-TCAC
73938450 TTTTTTTTC-C
1 TTTTTTTTCAC
*
73938460 TTTTTTTTCGAT
1 TTTTTTTTC-AC
* *
73938472 TTTTTTTTGAA
1 TTTTTTTTCAC
73938483 TTTTTTTTC
1 TTTTTTTTC
73938492 TGAATTTCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
10 10 0.28
11 11 0.31
12 15 0.42
ACGTcount: A:0.07, C:0.11, G:0.06, T:0.76
Consensus pattern (11 bp):
TTTTTTTTCAC
Found at i:73938474 original size:11 final size:11
Alignment explanation
Indices: 73938450--73938491 Score: 50
Period size: 10 Copynumber: 3.8 Consensus size: 11
73938440 TTTTTGTCAC
*
73938450 TTTTTTTTC-C
1 TTTTTTTTCGA
73938460 TTTTTTTTCGA
1 TTTTTTTTCGA
*
73938471 TTTTTTTTTGAA
1 TTTTTTTTCG-A
73938483 TTTTTTTTC
1 TTTTTTTTC
73938492 TGAATTTCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 9 0.33
11 9 0.33
12 9 0.33
ACGTcount: A:0.07, C:0.10, G:0.05, T:0.79
Consensus pattern (11 bp):
TTTTTTTTCGA
Found at i:73938487 original size:13 final size:13
Alignment explanation
Indices: 73938460--73938498 Score: 57
Period size: 11 Copynumber: 3.2 Consensus size: 13
73938450 TTTTTTTTCC
73938460 TTTTTTTTC-G-A
1 TTTTTTTTCTGAA
73938471 TTTTTTTT-TGAA
1 TTTTTTTTCTGAA
73938483 TTTTTTTTCTGAA
1 TTTTTTTTCTGAA
73938496 TTT
1 TTT
73938499 CTTCTCCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 9 0.36
12 9 0.36
13 7 0.28
ACGTcount: A:0.13, C:0.05, G:0.08, T:0.74
Consensus pattern (13 bp):
TTTTTTTTCTGAA
Found at i:73940251 original size:30 final size:30
Alignment explanation
Indices: 73940217--73940313 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
73940207 TAAACTAAAA
*
73940217 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
73940247 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
73940277 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
73940306 ATGAGCTA
1 -TGAGCTA
73940314 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Found at i:73949672 original size:27 final size:27
Alignment explanation
Indices: 73949634--73949685 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
73949624 TCATTGAAGC
*
73949634 ATCTTCATTGTTGTCCATGCATGTATT
1 ATCTTCAATGTTGTCCATGCATGTATT
73949661 ATCTTCAATGTTGTCCATGCATGTA
1 ATCTTCAATGTTGTCCATGCATGTA
73949686 CCTACAAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.44
Consensus pattern (27 bp):
ATCTTCAATGTTGTCCATGCATGTATT
Found at i:73951769 original size:17 final size:18
Alignment explanation
Indices: 73951747--73951780 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73951737 TTTTTCTTTT
73951747 TCAATTT-TTTCTCAATC
1 TCAATTTCTTTCTCAATC
*
73951764 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTCTCAAT
73951781 TTTCTTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.56
Consensus pattern (18 bp):
TCAATTTCTTTCTCAATC
Found at i:73951798 original size:27 final size:28
Alignment explanation
Indices: 73951738--73951804 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
73951728 TTCAACATCT
73951738 TTTTCTTTTTCAATTTTTTCTCAATCTCA
1 TTTTCTTTTTCAATTTTTTCTC-ATCTCA
* *
73951767 ATTTCTTTTTCAATTTTCTTTTC-T-TCA
1 TTTTCTTTTTCAATTTT-TTCTCATCTCA
73951794 TTTTCTTTTTC
1 TTTTCTTTTTC
73951805 TCTCACTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.38
28 1 0.03
29 16 0.47
30 4 0.12
ACGTcount: A:0.13, C:0.19, G:0.00, T:0.67
Consensus pattern (28 bp):
TTTTCTTTTTCAATTTTTTCTCATCTCA
Found at i:73953185 original size:6 final size:6
Alignment explanation
Indices: 73953176--73953228 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
73953166 TCATTTTCGA
** * *
73953176 TTTCTT TTTCTT TTGT-AA TTTCTT TTTCTT TTTCGT TTTCTT TTTCAT
1 TTTCTT TTTCTT TT-TCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
73953224 TTTCT
1 TTTCT
73953229 CGCTCGCACT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
5 1 0.03
6 35 0.95
7 1 0.03
ACGTcount: A:0.06, C:0.15, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTCTT
Found at i:73953215 original size:18 final size:17
Alignment explanation
Indices: 73953169--73953227 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 17
73953159 GATCACATCA
*
73953169 TTTTCGATTTCTTTTTC
1 TTTTCGTTTTCTTTTTC
73953186 TTTT-GTAATTTCTTTTTC
1 TTTTCGT--TTTCTTTTTC
73953204 TTTTTCGTTTTCTTTTTC
1 -TTTTCGTTTTCTTTTTC
73953222 ATTTTC
1 -TTTTC
73953228 TCGCTCGCAC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
16 1 0.03
17 4 0.11
18 25 0.69
19 4 0.11
20 2 0.06
ACGTcount: A:0.07, C:0.15, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTCGTTTTCTTTTTC
Found at i:73953957 original size:90 final size:90
Alignment explanation
Indices: 73953804--73954091 Score: 458
Period size: 90 Copynumber: 3.2 Consensus size: 90
73953794 GATGGGCTCA
73953804 AATCAAGAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAGTCAAGAAACCGAATCTTGGCCCAA
1 AATCAAGAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAGTCAAGAAACCGAATCTTGGCCCAA
73953869 TTTTGCTGTTTGGAGCGATTTCAAG
66 TTTTGCTGTTTGGAGCGATTTCAAG
73953894 AATCAAGAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAGTCAAGAAACCGAATCTTGGCCCAA
1 AATCAAGAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAGTCAAGAAACCGAATCTTGGCCCAA
73953959 TTTTGCTGTTTGGAGCGATTTCAAG
66 TTTTGCTGTTTGGAGCGATTTCAAG
** *** **
73953984 AATCAAGAAAATCAAGATTTCA-AATCTTGGAAATCTTG---GTCCAAGAAACCGAATCTTGGCC
1 AATCAAGAAAATCAAGA-TTCACTTTCTT-GTTTTCAAGAAAGT-CAAGAAACCGAATCTTGGCC
73954045 CAATTTTGCTGTTTGGAGCGATTTCAAG
63 CAATTTTGCTGTTTGGAGCGATTTCAAG
73954073 AATCAAGAAAATCAAGATT
1 AATCAAGAAAATCAAGATT
73954092 TCAAATCTTG
Statistics
Matches: 188, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
88 4 0.02
89 65 0.35
90 111 0.59
91 8 0.04
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (90 bp):
AATCAAGAAAATCAAGATTCACTTTCTTGTTTTCAAGAAAGTCAAGAAACCGAATCTTGGCCCAA
TTTTGCTGTTTGGAGCGATTTCAAG
Found at i:73954087 original size:89 final size:89
Alignment explanation
Indices: 73953846--73954130 Score: 450
Period size: 89 Copynumber: 3.2 Consensus size: 89
73953836 TCAAGAAAGT
73953846 CAAGAAACCGAATCTTGGCCCAATTTTGCTGTTTGGAGCGATTTCAAGAATCAAGAAAATCAAGA
1 CAAGAAACCGAATCTTGGCCCAATTTTGCTGTTTGGAGCGATTTCAAGAATCAAGAAAATCAAGA
** *** **
73953911 -TTCACTTTCTT-GTTTTCAAGAAAGT-
66 TTTCA-AATCTTGGAAATCTTG---GTC
73953936 CAAGAAACCGAATCTTGGCCCAATTTTGCTGTTTGGAGCGATTTCAAGAATCAAGAAAATCAAGA
1 CAAGAAACCGAATCTTGGCCCAATTTTGCTGTTTGGAGCGATTTCAAGAATCAAGAAAATCAAGA
73954001 TTTCAAATCTTGGAAATCTTGGTC
66 TTTCAAATCTTGGAAATCTTGGTC
73954025 CAAGAAACCGAATCTTGGCCCAATTTTGCTGTTTGGAGCGATTTCAAGAATCAAGAAAATCAAGA
1 CAAGAAACCGAATCTTGGCCCAATTTTGCTGTTTGGAGCGATTTCAAGAATCAAGAAAATCAAGA
73954090 TTTCAAATCTTGGAAATCTTGGTC
66 TTTCAAATCTTGGAAATCTTGGTC
73954114 CAAGAAACCGAATCTTG
1 CAAGAAACCGAATCTTG
73954131 CAGCCAAAGC
Statistics
Matches: 185, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
88 2 0.01
89 106 0.57
90 69 0.37
91 8 0.04
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (89 bp):
CAAGAAACCGAATCTTGGCCCAATTTTGCTGTTTGGAGCGATTTCAAGAATCAAGAAAATCAAGA
TTTCAAATCTTGGAAATCTTGGTC
Found at i:73956536 original size:14 final size:14
Alignment explanation
Indices: 73956517--73956543 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
73956507 GACATGTAAA
73956517 TAAAAACCTCACAG
1 TAAAAACCTCACAG
73956531 TAAAAACCTCACA
1 TAAAAACCTCACA
73956544 AAATCTCTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.30, G:0.04, T:0.15
Consensus pattern (14 bp):
TAAAAACCTCACAG
Found at i:73957006 original size:14 final size:14
Alignment explanation
Indices: 73956987--73957024 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
73956977 GTATGCAATT
73956987 TTTTTTCTTTTCAA
1 TTTTTTCTTTTCAA
*
73957001 TTTTTTCCTTTCAA
1 TTTTTTCTTTTCAA
73957015 TTTTTT-TTTT
1 TTTTTTCTTTT
73957025 TATTTTGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 3 0.14
14 19 0.86
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTTCTTTTCAA
Found at i:73957349 original size:21 final size:21
Alignment explanation
Indices: 73957323--73957366 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
73957313 TTGGTATTTG
*
73957323 GGAATTGGTTCGAAATAGTAT
1 GGAATTGGTACGAAATAGTAT
*
73957344 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATAGTAT
73957365 GG
1 GG
73957367 TTTTTGGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.34, T:0.30
Consensus pattern (21 bp):
GGAATTGGTACGAAATAGTAT
Found at i:73957376 original size:22 final size:23
Alignment explanation
Indices: 73957348--73957391 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
73957338 TAGTATGGAA
73957348 TTGGTACGAAATGGT-ATGGTTT
1 TTGGTACGAAATGGTAATGGTTT
*
73957370 TTGGTACGAATTGGTAATGGTT
1 TTGGTACGAAATGGTAATGGTT
73957392 CAAAGAGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.23, C:0.05, G:0.32, T:0.41
Consensus pattern (23 bp):
TTGGTACGAAATGGTAATGGTTT
Found at i:73957457 original size:114 final size:114
Alignment explanation
Indices: 73957319--73957544 Score: 443
Period size: 114 Copynumber: 2.0 Consensus size: 114
73957309 CGTTTTGGTA
*
73957319 TTTGGGAATTGGTTCGAAATAGTATGGAATTGGTACGAAATGGTATGGTTTTTGGTACGAATTGG
1 TTTGGGAATTGGTTCGAAATAGTATGGAATTGGTACGAAATGGTATGGTATTTGGTACGAATTGG
73957384 TAATGGTTCAAAGAGGTCAAGAATGAACCAACACTAAAGAAAAGTGTCG
66 TAATGGTTCAAAGAGGTCAAGAATGAACCAACACTAAAGAAAAGTGTCG
73957433 TTTGGGAATTGGTTCGAAATAGTATGGAATTGGTACGAAATGGTATGGTATTTGGTACGAATTGG
1 TTTGGGAATTGGTTCGAAATAGTATGGAATTGGTACGAAATGGTATGGTATTTGGTACGAATTGG
73957498 TAATGGTTCAAAGAGGTCAAGAATGAACCAACACTAAAGAAAAGTGT
66 TAATGGTTCAAAGAGGTCAAGAATGAACCAACACTAAAGAAAAGTGT
73957545 TGACCCGAAA
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 111 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (114 bp):
TTTGGGAATTGGTTCGAAATAGTATGGAATTGGTACGAAATGGTATGGTATTTGGTACGAATTGG
TAATGGTTCAAAGAGGTCAAGAATGAACCAACACTAAAGAAAAGTGTCG
Found at i:73957490 original size:22 final size:22
Alignment explanation
Indices: 73957439--73957504 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
73957429 GTCGTTTGGG
* *
73957439 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
73957460 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
73957482 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
73957505 TCAAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:73967442 original size:43 final size:43
Alignment explanation
Indices: 73967381--73967499 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
73967371 GTTACATGTA
*
73967381 TCGCATACATTATGAACTCGGACCACTCAACGAGCTCAAATGC
1 TCGCATACATAATGAACTCGGACCACTCAACGAGCTCAAATGC
* * * *
73967424 TCGCATCCATAATGAACTCGGACCTCTTAACGAGCTCGAATGC
1 TCGCATACATAATGAACTCGGACCACTCAACGAGCTCAAATGC
* * * ** *
73967467 -CACATATATCACCAATTCGGACCACTCAACGAG
1 TCGCATACATAATGAACTCGGACCACTCAACGAG
73967500 TTCGGACTTC
Statistics
Matches: 62, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 24 0.39
43 38 0.61
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (43 bp):
TCGCATACATAATGAACTCGGACCACTCAACGAGCTCAAATGC
Found at i:73971914 original size:52 final size:53
Alignment explanation
Indices: 73971853--73971967 Score: 133
Period size: 52 Copynumber: 2.2 Consensus size: 53
73971843 GAAAGTCTGT
* *** *
73971853 AAGGACTATCTTATATAGGAAGTCTGTAAGGACTATCTATTGTGGAAGTC-AC
1 AAGGACTATCCTATATAGGAAGTCCACAAGGACTATCTATTGAGGAAGTCTAC
* * * * *
73971905 AAGGACTATCCTATGTGGGAAGTCCACAAGGACTGTCTATTGAGGGAGTCTGC
1 AAGGACTATCCTATATAGGAAGTCCACAAGGACTATCTATTGAGGAAGTCTAC
73971958 AAGGACTATC
1 AAGGACTATC
73971968 GGCTAAGGAA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
52 41 0.79
53 11 0.21
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (53 bp):
AAGGACTATCCTATATAGGAAGTCCACAAGGACTATCTATTGAGGAAGTCTAC
Found at i:73971918 original size:26 final size:25
Alignment explanation
Indices: 73971880--73971967 Score: 97
Period size: 26 Copynumber: 3.4 Consensus size: 25
73971870 GGAAGTCTGT
73971880 AAGGACTATCTATTGTGGAAGTCAC
1 AAGGACTATCTATTGTGGAAGTCAC
73971905 AAGGACTATCCTA-TGTGGGAAGTCCAC
1 AAGGACTAT-CTATTGT-GGAAGT-CAC
* * * *
73971932 AAGGACTGTCTATTGAGGGAGTCTGC
1 AAGGACTATCTATTGTGGAAGTC-AC
73971958 AAGGACTATC
1 AAGGACTATC
73971968 GGCTAAGGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
25 13 0.25
26 27 0.51
27 13 0.25
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (25 bp):
AAGGACTATCTATTGTGGAAGTCAC
Found at i:73977016 original size:7 final size:7
Alignment explanation
Indices: 73977004--73977034 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
73976994 AGCGAGCAAC
73977004 ATGTGAT
1 ATGTGAT
73977011 ATGTGAT
1 ATGTGAT
73977018 ATGTGAT
1 ATGTGAT
73977025 ATGTGAT
1 ATGTGAT
73977032 ATG
1 ATG
73977035 AGGTAGCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (7 bp):
ATGTGAT
Found at i:73977202 original size:23 final size:23
Alignment explanation
Indices: 73977172--73977219 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
73977162 GAAAATAAGT
73977172 TATGTTGTACAAGCGGGCACAGG
1 TATGTTGTACAAGCGGGCACAGG
*
73977195 TATGTTGTACAAGTGGGCACAGG
1 TATGTTGTACAAGCGGGCACAGG
73977218 TA
1 TA
73977220 ATCTCAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (23 bp):
TATGTTGTACAAGCGGGCACAGG
Found at i:73979080 original size:45 final size:45
Alignment explanation
Indices: 73979016--73979106 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
73979006 CAAGGTTCAT
*
73979016 TTAAATAATTTATTCACTATTTAATTCTATTCCAAATATTTTTAG
1 TTAAATAATTTATTCACTATTTAATTCTACTCCAAATATTTTTAG
* *
73979061 TTAAATAATTTATTCACTATTTAATTCTACTCCTACTATTTTTAG
1 TTAAATAATTTATTCACTATTTAATTCTACTCCAAATATTTTTAG
73979106 T
1 T
73979107 GATTTTCCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.33, C:0.13, G:0.02, T:0.52
Consensus pattern (45 bp):
TTAAATAATTTATTCACTATTTAATTCTACTCCAAATATTTTTAG
Found at i:73980172 original size:49 final size:49
Alignment explanation
Indices: 73980052--73980407 Score: 576
Period size: 49 Copynumber: 7.3 Consensus size: 49
73980042 CCCTTCGGGA
* * * * * * *
73980052 CTTATCACAT-T-TATACACTTTCACATCCAGCACGTTGGCCACTCGGC
1 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73980099 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
73980146 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
73980195 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
73980244 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
*
73980293 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
*
73980342 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
73980391 CTTATCACATATATATA
1 CTTATCACATATATATA
73980408 CATTCACATC
Statistics
Matches: 291, Mismatches: 14, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 42 0.14
49 248 0.85
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATAGACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73986977 original size:51 final size:51
Alignment explanation
Indices: 73986917--73987018 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
73986907 TTTTGTGGTG
73986917 AATGTTGGTTAAACACTCTTCTACACCCTA-GAGTTTTATTTTATGATTCCT
1 AATGTTGGTTAAACACTCTTCTACACCCTAGGA-TTTTATTTTATGATTCCT
* * **
73986968 AATGTTGGTTAAACACTGTTCTGCATGCTAGGATTTTATTTTATGATTCCT
1 AATGTTGGTTAAACACTCTTCTACACCCTAGGATTTTATTTTATGATTCCT
73987019 TTCTTTTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 44 0.96
52 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.44
Consensus pattern (51 bp):
AATGTTGGTTAAACACTCTTCTACACCCTAGGATTTTATTTTATGATTCCT
Found at i:73994991 original size:56 final size:51
Alignment explanation
Indices: 73994894--73995134 Score: 202
Period size: 50 Copynumber: 4.7 Consensus size: 51
73994884 ATTTGGGTAA
**
73994894 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCACTGGCATCCTTGAGATCATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCC--GAGA-C--G
* * *
73994950 AGAGGTCCCATGTAAGACCATGTCTGGAACATGGTGTTGGCAT-CGAGACG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCCGAGACG
* * * *
73995000 AGAGCTCCCATCTGAGACCATGTCTGGGACATGGCGTTGGCAT-CGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCCGAGACG
* * ** * * * * *
73995050 TGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCAT-CGATATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCCGAGACG
* * * *
73995100 AGA-ACTCCCATGTAATACCATATCTGCGAGATGGC
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGC
73995135 ATCGGCAGTA
Statistics
Matches: 154, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
50 110 0.71
52 1 0.01
53 4 0.03
55 1 0.01
56 38 0.25
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (51 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCCGAGACG
Found at i:73995093 original size:100 final size:103
Alignment explanation
Indices: 73994894--73995135 Score: 249
Period size: 100 Copynumber: 2.3 Consensus size: 103
73994884 ATTTGGGTAA
* *
73994894 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCACTGGCATCCTTGAGATCATGAGAGGTCCC
1 AGAGCTCCCATCTAAGACCATGTCTGGGACATGGCACTGGCATCC-TGAGA--ATGAGAGGTCCC
* ** *
73994959 ATGTAAGACCATGTCTGGAACATGGTGTTGGCATCGAGACG
63 ACGTAAGACCATGTCTGGAACATGGCATGGGCATCGAGACG
* ** * *
73995000 AGAGCTCCCATCTGAGACCATGTCTGGGACATGGCGTTGGCAT-C-GAG-ATGTGAGGTCCCCCG
1 AGAGCTCCCATCTAAGACCATGTCTGGGACATGGCACTGGCATCCTGAGAATGAGAGGTCCCACG
* *
73995062 TAAGACCATGTCTAGG-ACATGGCATGGGCATCGATATG
66 TAAGACCATGTCT-GGAACATGGCATGGGCATCGAGACG
* * * * * *
73995100 AGAACTCCCATGTAATACCATATCTGCGAGATGGCA
1 AGAGCTCCCATCTAAGACCATGTCTGGGACATGGCA
73995136 TCGGCAGTAC
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
100 70 0.61
101 2 0.02
103 3 0.03
105 1 0.01
106 38 0.33
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (103 bp):
AGAGCTCCCATCTAAGACCATGTCTGGGACATGGCACTGGCATCCTGAGAATGAGAGGTCCCACG
TAAGACCATGTCTGGAACATGGCATGGGCATCGAGACG
Found at i:74002571 original size:50 final size:50
Alignment explanation
Indices: 74002450--74002747 Score: 303
Period size: 50 Copynumber: 5.9 Consensus size: 50
74002440 ATTTGGGTAA
* * *
74002450 AGAGATCCCATGTAAGACCATGTCTTGGACATGACATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT-C--GAG---ATG
* * * *
74002506 AGAGGTGCCAGGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
* * * *
74002556 AGAGGTCCCATGTAAGACCATGCCTGGGACATGGCGTTGGCACCGGGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
** * *
74002606 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCATCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
** * *
74002656 AGAACTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCA--GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCG-AGATG
* ** * *
74002705 AAACATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
74002748 GTTATTATAA
Statistics
Matches: 208, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.00
49 42 0.20
50 124 0.60
53 3 0.01
55 1 0.00
56 37 0.18
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
Found at i:74006756 original size:26 final size:27
Alignment explanation
Indices: 74006727--74006777 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
74006717 TATTGTAATG
*
74006727 CCCCTAAAGGGTAAATGACT-ATTTTA
1 CCCCTAAAGGGTAAATAACTGATTTTA
**
74006753 CCCCTCGAGGGTAAATAACTGATTT
1 CCCCTAAAGGGTAAATAACTGATTT
74006778 GTGCTATGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (27 bp):
CCCCTAAAGGGTAAATAACTGATTTTA
Found at i:74015743 original size:27 final size:27
Alignment explanation
Indices: 74015705--74015803 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
74015695 TTCGTGGGCT
*
74015705 AATGATCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCTCGAAGGGTAA
*
74015732 AATGACCGAAATACCCCCGAAGGGTAA
1 AATGACCGAAATACCCTCGAAGGGTAA
* *
74015759 AATGACCGAAATACCC-CCACAGGATAA
1 AATGACCGAAATACCCTCGA-AGGGTAA
*
74015786 AATGACTGAAATACCCTC
1 AATGACCGAAATACCCTC
74015804 AAATGATAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
26 2 0.03
27 62 0.95
28 1 0.02
ACGTcount: A:0.41, C:0.25, G:0.18, T:0.15
Consensus pattern (27 bp):
AATGACCGAAATACCCTCGAAGGGTAA
Found at i:74015811 original size:27 final size:27
Alignment explanation
Indices: 74015705--74015819 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 27
74015695 TTCGTGGGCT
* * * *
74015705 AATGATCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCCCAAAGGATAA
* *
74015732 AATGACCGAAATACCCCCGAAGGGTAA
1 AATGACCGAAATACCCCCAAAGGATAA
*
74015759 AATGACCGAAATACCCCCACAGGATAA
1 AATGACCGAAATACCCCCAAAGGATAA
* * *
74015786 AATGACTGAAATACCCTCAAATGATAA
1 AATGACCGAAATACCCCCAAAGGATAA
*
74015813 TATGACC
1 AATGACC
74015820 ATTACACCCC
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (27 bp):
AATGACCGAAATACCCCCAAAGGATAA
Found at i:74017466 original size:27 final size:26
Alignment explanation
Indices: 74017435--74017612 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
74017425 TAAATTGTAC
74017435 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
74017462 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* * *
74017488 ATGCACTAAGTGTGCAAATTGACCATGC
1 A-GCACTAAGTGTGC-GATTGACTATGT
*
74017516 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
74017544 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
74017571 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
74017598 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74017613 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:74017603 original size:82 final size:81
Alignment explanation
Indices: 74017432--74017612 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
74017422 GATTAAATTG
* *
74017432 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
74017497 GTGTGCAAATTGACCA
66 GTGTGCAAATTGACCA
* * * ** *
74017513 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
74017577 AAGTGTGCGAGTTGATTA
64 AAGTGTGCAAATTGACCA
* *
74017595 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
74017613 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCAAATTGACCA
Found at i:74017623 original size:27 final size:27
Alignment explanation
Indices: 74017517--74017623 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
74017507 TGACCATGCG
* * * *
74017517 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
74017545 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
74017572 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
74017599 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
74017624 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:74019152 original size:28 final size:28
Alignment explanation
Indices: 74019111--74019314 Score: 255
Period size: 28 Copynumber: 7.3 Consensus size: 28
74019101 GTTGCATTAT
* *
74019111 CACACTGTTTCTGTTTTAGGCTAAGGCC
1 CACACTGTTTCTGTATTGGGCTAAGGCC
* *
74019139 CACACTGTTACTGTAATGGGCTAAGGCC
1 CACACTGTTTCTGTATTGGGCTAAGGCC
*
74019167 CACACTATTTCTGTATTGGGCTAAGGCC
1 CACACTGTTTCTGTATTGGGCTAAGGCC
* *
74019195 CACATTGTTTCTGTTTTGGGCTAAGGCC
1 CACACTGTTTCTGTATTGGGCTAAGGCC
* * * *
74019223 CACACTGTTACTATAATGGGATAAGGCC
1 CACACTGTTTCTGTATTGGGCTAAGGCC
* *
74019251 CATATTGTTTCTGTATTGGGCTAAGGCC
1 CACACTGTTTCTGTATTGGGCTAAGGCC
* * * *
74019279 CACATTGTTACCGTATCGGGCTAAGGCC
1 CACACTGTTTCTGTATTGGGCTAAGGCC
74019307 CACACTGT
1 CACACTGT
74019315 ACTATTACCG
Statistics
Matches: 149, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 149 1.00
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (28 bp):
CACACTGTTTCTGTATTGGGCTAAGGCC
Found at i:74019219 original size:84 final size:84
Alignment explanation
Indices: 74019111--74019319 Score: 312
Period size: 84 Copynumber: 2.5 Consensus size: 84
74019101 GTTGCATTAT
* * * *
74019111 CACACTGTTTCTGTTTTAGGCTAAGGCCCACACTGTTACTGTAATGGGCTAAGGCCCACACTATT
1 CACATTGTTTCTGTTTTGGGCTAAGGCCCACACTGTTACTATAATGGGATAAGGCCCACACTATT
74019176 TCTGTATTGGGCTAAGGCC
66 TCTGTATTGGGCTAAGGCC
* * *
74019195 CACATTGTTTCTGTTTTGGGCTAAGGCCCACACTGTTACTATAATGGGATAAGGCCCATATTGTT
1 CACATTGTTTCTGTTTTGGGCTAAGGCCCACACTGTTACTATAATGGGATAAGGCCCACACTATT
74019260 TCTGTATTGGGCTAAGGCC
66 TCTGTATTGGGCTAAGGCC
* * * *
74019279 CACATTGTTACCGTATCGGGCTAAGGCCCACACTG-TACTAT
1 CACATTGTTTCTGTTTTGGGCTAAGGCCCACACTGTTACTAT
74019320 TACCGCGTTG
Statistics
Matches: 114, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
83 6 0.05
84 108 0.95
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (84 bp):
CACATTGTTTCTGTTTTGGGCTAAGGCCCACACTGTTACTATAATGGGATAAGGCCCACACTATT
TCTGTATTGGGCTAAGGCC
Found at i:74022107 original size:40 final size:40
Alignment explanation
Indices: 74022023--74022206 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
74022013 TTGAATGCTG
* * * *
74022023 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
74022062 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
74022103 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
74022143 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
74022183 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
74022207 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:74022160 original size:80 final size:81
Alignment explanation
Indices: 74022023--74022203 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
74022013 TTGAATGCTG
* *
74022023 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
74022087 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
74022103 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
74022164 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
74022183 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
74022204 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:74024197 original size:28 final size:28
Alignment explanation
Indices: 74024139--74024197 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
74024129 GTATCAGTAT
* * *
74024139 AGTGTGGGCCTTAGACCATTACAGTAAC
1 AGTGTGGGCCCTAGACCAATACAGAAAC
*
74024167 AGTGTGGGCCCTA-CCCAATACAGAAATC
1 AGTGTGGGCCCTAGACCAATACAGAAA-C
74024195 AGT
1 AGT
74024198 ATAATGTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.22
Consensus pattern (28 bp):
AGTGTGGGCCCTAGACCAATACAGAAAC
Found at i:74024334 original size:26 final size:26
Alignment explanation
Indices: 74024300--74024350 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
74024290 AACACACCAA
* *
74024300 TAACGCAGCCAAGCTGCCAATAACAG
1 TAACACAGCAAAGCTGCCAATAACAG
*
74024326 TAACACAGCAAAGCTGCCAGTAACA
1 TAACACAGCAAAGCTGCCAATAACA
74024351 TTATATGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.41, C:0.29, G:0.18, T:0.12
Consensus pattern (26 bp):
TAACACAGCAAAGCTGCCAATAACAG
Found at i:74024561 original size:27 final size:26
Alignment explanation
Indices: 74024531--74024638 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
74024521 GGGGTATAAT
*
74024531 AGTCATTTTACCTTATGGAGATATTTC
1 AGTCATTTTACCTT-TGGAGGTATTTC
* *
74024558 AGTCATTTTACCCTTTGGGGGTAATTC
1 AGTCATTTTA-CCTTTGGAGGTATTTC
* *
74024585 AATTATTTTACCTTTCGGAGGTATTTC
1 AGTCATTTTACCTTT-GGAGGTATTTC
* * *
74024612 GGTAATTTTACCCTTTGAAGGTATTTC
1 AGTCATTTTA-CCTTTGGAGGTATTTC
74024639 GGTAATTTGT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 5 0.07
27 53 0.79
28 9 0.13
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (26 bp):
AGTCATTTTACCTTTGGAGGTATTTC
Found at i:74028275 original size:19 final size:19
Alignment explanation
Indices: 74028251--74028292 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
74028241 AGGATTAGAA
74028251 AATATTTATCA-ATCATAAT
1 AATATTTATCACATCAT-AT
*
74028270 AATATTTGTCACATCATAT
1 AATATTTATCACATCATAT
74028289 AATA
1 AATA
74028293 AAAATCAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.40
Consensus pattern (19 bp):
AATATTTATCACATCATAT
Found at i:74028954 original size:11 final size:11
Alignment explanation
Indices: 74028933--74028996 Score: 67
Period size: 11 Copynumber: 5.8 Consensus size: 11
74028923 GGTACGGTTT
*
74028933 TGATGTGGTGG
1 TGATTTGGTGG
*
74028944 TGGTTTGGTGG
1 TGATTTGGTGG
**
74028955 TGATAGGGTGG
1 TGATTTGGTGG
74028966 TGATTTGGTGG
1 TGATTTGGTGG
*
74028977 TTG-TTGGGTGG
1 -TGATTTGGTGG
74028988 TGATTTGGT
1 TGATTTGGT
74028997 TTGCGATACA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
10 2 0.05
11 38 0.90
12 2 0.05
ACGTcount: A:0.08, C:0.00, G:0.50, T:0.42
Consensus pattern (11 bp):
TGATTTGGTGG
Found at i:74028958 original size:22 final size:22
Alignment explanation
Indices: 74028932--74028996 Score: 87
Period size: 22 Copynumber: 2.9 Consensus size: 22
74028922 TGGTACGGTT
*
74028932 TTGATGTGGTGGTGGTTTGGTGG
1 TTGATG-GGTGGTGATTTGGTGG
74028955 -TGATAGGGTGGTGATTTGGTGG
1 TTGAT-GGGTGGTGATTTGGTGG
*
74028977 TTGTTGGGTGGTGATTTGGT
1 TTGATGGGTGGTGATTTGGT
74028997 TTGCGATACA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
22 34 0.89
23 4 0.11
ACGTcount: A:0.08, C:0.00, G:0.49, T:0.43
Consensus pattern (22 bp):
TTGATGGGTGGTGATTTGGTGG
Found at i:74033120 original size:26 final size:26
Alignment explanation
Indices: 74033083--74033153 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
74033073 CGTTTCGACC
* *
74033083 CACAACTCGTGTGAGCATGCCCATTT
1 CACAGCTCGTGTGAGCATACCCATTT
* * * *
74033109 CACAGCTTGTGTAAGAATACTCATTT
1 CACAGCTCGTGTGAGCATACCCATTT
*
74033135 CATAGCTCGTGTGAGCATA
1 CACAGCTCGTGTGAGCATA
74033154 TATGTACCGA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCATACCCATTT
Found at i:74033903 original size:54 final size:52
Alignment explanation
Indices: 74033840--74033999 Score: 130
Period size: 52 Copynumber: 3.0 Consensus size: 52
74033830 TAATATTATG
74033840 CTTATGGTTTATACTAGCTTACTAAGAATTTATTGTTTATGTGGTTATCTTT
1 CTTATGGTTTATACTAGCTTACTAAGAATTTATTGTTTATGTGGTTATCTTT
* * * * * ** * *
74033892 CTATATAGGTTTATATTTAACCTA-T-A-AATTTCATTATTGAAAT-GTAATATTAT
1 CT-TAT-GGTTTATA-CTAGCTTACTAAGAATTT-ATTGTTTATGTGGTTATCTT-T
* * *
74033945 GCTTATGGTTTATACGAGCTTACTAAGCATTTATTGCTTATGTGGTTATCTTT
1 -CTTATGGTTTATACTAGCTTACTAAGAATTTATTGTTTATGTGGTTATCTTT
74033998 CT
1 CT
74034000 CTTACTTTAC
Statistics
Matches: 77, Mismatches: 21, Indels: 20
0.65 0.18 0.17
Matches are distributed among these distances:
51 4 0.05
52 24 0.31
53 23 0.30
54 21 0.27
55 5 0.06
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (52 bp):
CTTATGGTTTATACTAGCTTACTAAGAATTTATTGTTTATGTGGTTATCTTT
Found at i:74033955 original size:52 final size:51
Alignment explanation
Indices: 74033793--74033958 Score: 149
Period size: 52 Copynumber: 3.2 Consensus size: 51
74033783 CATTGGTGTA
*
74033793 GGTTTATATTTAACCTTTAAATTTAATTATTGAAATGTAATATTATGCTTAT
1 GGTTTATATTTAACCTATAAATTT-ATTATTGAAATGTAATATTATGCTTAT
* * * * * ** * *
74033845 GGTTTATA-CTAGCTTACTAAGAATTTATTGTTTATGTGGTTATCTT-T-CTATAT
1 GGTTTATATTTAACCTA-T-A-AATTTATTATTGAAAT-GTAATATTATGCT-TAT
74033898 AGGTTTATATTTAACCTATAAATTTCATTATTGAAATGTAATATTATGCTTAT
1 -GGTTTATATTTAACCTATAAATTT-ATTATTGAAATGTAATATTATGCTTAT
74033951 GGTTTATA
1 GGTTTATA
74033959 CGAGCTTACT
Statistics
Matches: 85, Mismatches: 19, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
51 4 0.05
52 30 0.35
53 24 0.28
54 22 0.26
55 5 0.06
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.49
Consensus pattern (51 bp):
GGTTTATATTTAACCTATAAATTTATTATTGAAATGTAATATTATGCTTAT
Found at i:74033977 original size:106 final size:106
Alignment explanation
Indices: 74033791--74033999 Score: 373
Period size: 106 Copynumber: 2.0 Consensus size: 106
74033781 GGCATTGGTG
* *
74033791 TAGGTTTATATTTAACCTTTAAATTTAATTATTGAAATGTAATATTATGCTTATGGTTTATACTA
1 TAGGTTTATATTTAACCTATAAATTTAATTATTGAAATGTAATATTATGCTTATGGTTTATACGA
*
74033856 GCTTACTAAGAATTTATTGTTTATGTGGTTATCTTTCTATA
66 GCTTACTAAGAATTTATTGCTTATGTGGTTATCTTTCTATA
*
74033897 TAGGTTTATATTTAACCTATAAATTTCATTATTGAAATGTAATATTATGCTTATGGTTTATACGA
1 TAGGTTTATATTTAACCTATAAATTTAATTATTGAAATGTAATATTATGCTTATGGTTTATACGA
*
74033962 GCTTACTAAGCATTTATTGCTTATGTGGTTATCTTTCT
66 GCTTACTAAGAATTTATTGCTTATGTGGTTATCTTTCT
74034000 CTTACTTTAC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 98 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (106 bp):
TAGGTTTATATTTAACCTATAAATTTAATTATTGAAATGTAATATTATGCTTATGGTTTATACGA
GCTTACTAAGAATTTATTGCTTATGTGGTTATCTTTCTATA
Found at i:74043285 original size:34 final size:34
Alignment explanation
Indices: 74043238--74043305 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
74043228 GCACAGTTGA
* *
74043238 ACAGTCTTAGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTAGGCCTAAGCCCATCTCAGTA-CAGTG
* *
74043273 ACAGT-TTGGGCCTTAGCCCATCTCAGTACAGTG
1 ACAGTCTTAGGCCTAAGCCCATCTCAGTACAGTG
74043306 TAAAAAATGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.17
34 19 0.66
35 5 0.17
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (34 bp):
ACAGTCTTAGGCCTAAGCCCATCTCAGTACAGTG
Found at i:74045613 original size:20 final size:20
Alignment explanation
Indices: 74045567--74045613 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
74045557 AGCTCGTTTC
*
74045567 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
74045587 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
74045607 CAGCTCA
1 CAGCTCA
74045614 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:74047924 original size:31 final size:32
Alignment explanation
Indices: 74047864--74047924 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
74047854 TATCCTTGGT
74047864 TAAACAAGTATCTTATTTAATAAAATTTTTTA
1 TAAACAAGTATCTTATTTAATAAAATTTTTTA
* * *
74047896 TAAACAATTATCTT-TTTGATAAACTTTTT
1 TAAACAAGTATCTTATTTAATAAAATTTTT
74047925 CATACACATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 13 0.50
32 13 0.50
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.49
Consensus pattern (32 bp):
TAAACAAGTATCTTATTTAATAAAATTTTTTA
Found at i:74050906 original size:26 final size:26
Alignment explanation
Indices: 74050874--74050924 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
74050864 TCTAGCAGAA
74050874 TAATTAACATATATAAGACCAATAAG
1 TAATTAACATATATAAGACCAATAAG
*
74050900 TAATTAACATATATAAGACTAATAA
1 TAATTAACATATATAAGACCAATAA
74050925 CAAAAAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (26 bp):
TAATTAACATATATAAGACCAATAAG
Found at i:74051227 original size:23 final size:24
Alignment explanation
Indices: 74051197--74051244 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
74051187 CTAACAAATT
*
74051197 AATAGATGG-TTTTTAATGATTTC
1 AATAGATGGCCTTTTAATGATTTC
74051220 AATAGATGGCCTTTTAATGATTTC
1 AATAGATGGCCTTTTAATGATTTC
74051244 A
1 A
74051245 GTACCCGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (24 bp):
AATAGATGGCCTTTTAATGATTTC
Found at i:74053487 original size:37 final size:37
Alignment explanation
Indices: 74053436--74053510 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
74053426 AGGATCCTTG
74053436 GTAGGGAAAATTTCCACAAGGTCTTCAAACTTCCAAA
1 GTAGGGAAAATTTCCACAAGGTCTTCAAACTTCCAAA
* *
74053473 GTAGGGAAAGTTTCCACACGGTCTTCAAACTTCCAAA
1 GTAGGGAAAATTTCCACAAGGTCTTCAAACTTCCAAA
74053510 G
1 G
74053511 AGGTAAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.24
Consensus pattern (37 bp):
GTAGGGAAAATTTCCACAAGGTCTTCAAACTTCCAAA
Found at i:74061058 original size:28 final size:29
Alignment explanation
Indices: 74061001--74061058 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 29
74060991 TTTAAATAAA
* *
74061001 TATGGACTTTTATTTATGATTTGGATTTT
1 TATGGACTTTTATTGATGATTTGGAATTT
*
74061030 TATGGAC-TTTATTGCT-ATTTGGGAATTT
1 TATGGACTTTTATTGATGATTT-GGAATTT
74061058 T
1 T
74061059 TATGTTAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 4 0.16
28 14 0.56
29 7 0.28
ACGTcount: A:0.21, C:0.05, G:0.19, T:0.55
Consensus pattern (29 bp):
TATGGACTTTTATTGATGATTTGGAATTT
Found at i:74068196 original size:37 final size:38
Alignment explanation
Indices: 74068123--74068197 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 38
74068113 AGTTAAATAA
* *
74068123 AATAAAGTCCAGCAACTCAATTATTAACTAAGATGAGTTT
1 AATAAAGTCCAGCAACT--ATAATTAACTAAAATGAGTTT
74068163 AATAAAGTCCAGCAACT-TAATTAACTAAAATGAGT
1 AATAAAGTCCAGCAACTATAATTAACTAAAATGAGT
74068198 AATTTATTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
37 16 0.48
40 17 0.52
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (38 bp):
AATAAAGTCCAGCAACTATAATTAACTAAAATGAGTTT
Found at i:74074929 original size:40 final size:40
Alignment explanation
Indices: 74074840--74075061 Score: 244
Period size: 40 Copynumber: 5.6 Consensus size: 40
74074830 TTGAATGCTG
*
74074840 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
74074879 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
74074919 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
74074958 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
74074998 TCCGGGTTAAGTCCCGAAGGCTTTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
74075039 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
74075062 CGAACGAGGA
Statistics
Matches: 160, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 52 0.32
40 95 0.59
41 12 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:74074975 original size:79 final size:80
Alignment explanation
Indices: 74074840--74075061 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 80
74074830 TTGAATGCTG
* * * * *
74074840 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
74074902 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* * *
74074919 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCTGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
74074982 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * *
74074998 TCCGGGTTAAGTCCCGAAGGCTTTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATT
74075062 CGAACGAGGA
Statistics
Matches: 121, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
78 11 0.09
79 57 0.47
80 51 0.42
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:74075081 original size:80 final size:80
Alignment explanation
Indices: 74074840--74075096 Score: 208
Period size: 79 Copynumber: 3.2 Consensus size: 80
74074830 TTGAATGCTG
* * * *
74074840 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA-ATCCGGGCTAAG-TCCCGAAGGCA
* ** *
74074901 TTTGTGCGAGAT-ACTAAT
63 TTCGAACGAG-TGACTAAA
* * * * *
74074919 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTC
** *
74074983 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
74074998 TCCGGGTTAAGTCCCGAAGGCTTTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
74075062 CGAACGAG-GAGCTATA
65 CGAACGAGTGA-CTAAA
* *
74075078 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
74075097 TACGTGATTT
Statistics
Matches: 150, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
78 11 0.07
79 72 0.48
80 65 0.43
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:74079574 original size:27 final size:28
Alignment explanation
Indices: 74079541--74079614 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 28
74079531 TGGCCCCTTT
*
74079541 AGGCCCAATCTCATTCATATGACCCATC
1 AGGCCCAATCACATTCATATGACCCATC
* * *
74079569 -GGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGACCCATC
*
74079596 AAGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
74079615 GTCATGCAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.28, C:0.35, G:0.12, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGACCCATC
Found at i:74084281 original size:28 final size:28
Alignment explanation
Indices: 74084218--74084291 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 28
74084208 TGGCCCCTTT
* *
74084218 AGGCCCAATCTCATTCATATGATCCATC
1 AGGCCCAATCACATTCATATGACCCATC
* * *
74084246 -GGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGACCCATC
74084273 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
74084292 GTCATGCAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.27, C:0.34, G:0.14, T:0.26
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGACCCATC
Found at i:74090155 original size:78 final size:78
Alignment explanation
Indices: 74090068--74090985 Score: 1540
Period size: 78 Copynumber: 11.8 Consensus size: 78
74090058 AATCCCGCAG
** *
74090068 GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090133 TAAAGACCCGTAT
66 TAAAGACCCGTAT
74090146 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090211 TAAAGACCCGTAT
66 TAAAGACCCGTAT
74090224 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090289 TAAAGACCCGTAT
66 TAAAGACCCGTAT
74090302 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090367 TAAAGACCCGTAT
66 TAAAGACCCGTAT
74090380 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090445 TAAAGACCCGTAT
66 TAAAGACCCGTAT
74090458 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090523 TAAAGACCCGTAT
66 TAAAGACCCGTAT
74090536 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090601 TAAAGACCCGTAT
66 TAAAGACCCGTAT
74090614 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090679 TAAAGACCCGTAT
66 TAAAGACCCGTAT
** * * *
74090692 GCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGCAATATATCCGGG-T
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
* * *
74090756 TAAA-TCCCGCAG
66 TAAAGACCCGTAT
* ** *
74090768 GCTTCGTGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
74090833 TAAAGACCCGTAT
66 TAAAGACCCGTAT
**
74090846 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAATATCCGGG-T
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
* *
74090910 TAAA-TCCCGCT-G
66 TAAAGACCCG-TAT
* ** * * * * * *
74090922 GCTTCGTACTGGTATTATATCCTGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATTCGGGC
1 GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGC
74090986 CTTCGTGCCT
Statistics
Matches: 800, Mismatches: 36, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
76 121 0.15
77 16 0.02
78 663 0.83
ACGTcount: A:0.21, C:0.22, G:0.26, T:0.31
Consensus pattern (78 bp):
GCTTCGTGCTGGTAAAATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCT
TAAAGACCCGTAT
Found at i:74091058 original size:43 final size:42
Alignment explanation
Indices: 74090956--74091058 Score: 136
Period size: 43 Copynumber: 2.5 Consensus size: 42
74090946 GATAAATCCC
74090956 GCAGGCCTAGTGCTGGT-ATTATATTCGGGCCTTCGTGCCTA
1 GCAGGCCTAGTGCTGGTGATTATATTCGGGCCTTCGTGCCTA
* * * *
74090997 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCCTAGTGCTGGTGAT-TATATTCGGGCCTTCGTGCCTA
* *
74091040 GCAGGCGTAATGCTGGTGA
1 GCAGGCCTAGTGCTGGTGA
74091059 AATGATATGT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 14 0.27
42 2 0.04
43 36 0.69
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (42 bp):
GCAGGCCTAGTGCTGGTGATTATATTCGGGCCTTCGTGCCTA
Found at i:74097168 original size:39 final size:39
Alignment explanation
Indices: 74097125--74097257 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
74097115 CACTTTTAAA
* * * *
74097125 CATATATCACATTACACATATAAGCACATAACATTTAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
* *
74097164 CATATATCAAAATACTCGTATAATCACATAACATTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
*
74097203 CATAGATCACAATACTCATATAATCACATAACATTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
74097242 CATATATCACAATACT
1 CATATATCACAATACT
74097258 AAAAAACATG
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.46, C:0.22, G:0.05, T:0.28
Consensus pattern (39 bp):
CATATATCACAATACTCATATAATCACATAACATTCAAG
Found at i:74105792 original size:19 final size:20
Alignment explanation
Indices: 74105756--74105799 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
74105746 CTCATGAATT
74105756 TTTCATACATATCTATACCC
1 TTTCATACATATCTATACCC
74105776 TTTCA-ACATGATC-ATACCC
1 TTTCATACAT-ATCTATACCC
*
74105795 ATTCA
1 TTTCA
74105800 CATCTTTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.32, C:0.30, G:0.02, T:0.36
Consensus pattern (20 bp):
TTTCATACATATCTATACCC
Found at i:74106045 original size:48 final size:48
Alignment explanation
Indices: 74105974--74106096 Score: 183
Period size: 48 Copynumber: 2.6 Consensus size: 48
74105964 TGTCTCATAT
*
74105974 CAATGCCATGTCCCAAACATGGTCTTACAAGAAACCTCATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACAAGAAACCTCATATCGATGC
* * * ** *
74106022 CAATGCCATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACAAGAAACCTCATATCGATGC
74106070 CAATGCCATGTCCCAGACATGGTCTTA
1 CAATGCCATGTCCCAGACATGGTCTTA
74106097 TATGGTATCA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 66 1.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACAAGAAACCTCATATCGATGC
Found at i:74109961 original size:42 final size:42
Alignment explanation
Indices: 74109840--74110003 Score: 157
Period size: 42 Copynumber: 3.9 Consensus size: 42
74109830 TACCATACCA
* ***
74109840 ATGCCATATCCCAAATATGGTCTTACATGGAATCTCATATCG
1 ATGCAATATCCCAAATATGGTCTTACACAAAATCTCATATCG
* * ** * * *
74109882 ATGCCAATAGCCTAGCTATGGTCTCACACGAAGTCTCATATCG
1 ATG-CAATATCCCAAATATGGTCTTACACAAAATCTCATATCG
** *
74109925 ATGTTATATCCCAAATATGGTCTTACACAAAATCTCATATAG
1 ATGCAATATCCCAAATATGGTCTTACACAAAATCTCATATCG
* * * *
74109967 ATGCCATATCCCAGATATAGTCTTACACATAATCTCA
1 ATGCAATATCCCAAATATGGTCTTACACAAAATCTCA
74110004 ATAACCCTAA
Statistics
Matches: 97, Mismatches: 24, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
42 64 0.66
43 33 0.34
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (42 bp):
ATGCAATATCCCAAATATGGTCTTACACAAAATCTCATATCG
Found at i:74117096 original size:19 final size:19
Alignment explanation
Indices: 74117072--74117148 Score: 140
Period size: 19 Copynumber: 4.2 Consensus size: 19
74117062 AGATTACAAG
74117072 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
74117091 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
74117110 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
74117127 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
74117146 ATC
1 ATC
74117149 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.30
19 39 0.70
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:74117137 original size:36 final size:37
Alignment explanation
Indices: 74117072--74117148 Score: 138
Period size: 36 Copynumber: 2.1 Consensus size: 37
74117062 AGATTACAAG
74117072 ATCATATCTAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTG-ATATCATATCTAAGATTGCAT
74117110 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
74117146 ATC
1 ATC
74117149 CTTAAAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 23 0.59
38 16 0.41
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:74124353 original size:23 final size:23
Alignment explanation
Indices: 74124323--74124368 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
74124313 CGTCCAAGGT
74124323 AAGTTTATAAGCAAATAGACATG
1 AAGTTTATAAGCAAATAGACATG
74124346 AAGTTTATAAGCAAATAGACATG
1 AAGTTTATAAGCAAATAGACATG
74124369 TTAAATTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (23 bp):
AAGTTTATAAGCAAATAGACATG
Found at i:74124880 original size:44 final size:44
Alignment explanation
Indices: 74124817--74124907 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
74124807 TTACCTAAAA
74124817 TAAGGTAAGTGTATTCAGTCTTGAGACTATATTGAAATGAGCCT
1 TAAGGTAAGTGTATTCAGTCTTGAGACTATATTGAAATGAGCCT
74124861 TAAGGTAAGTGTATTCAGTCTTGAGACTATATTGAAATGAGCCT
1 TAAGGTAAGTGTATTCAGTCTTGAGACTATATTGAAATGAGCCT
74124905 TAA
1 TAA
74124908 AATTATGCAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (44 bp):
TAAGGTAAGTGTATTCAGTCTTGAGACTATATTGAAATGAGCCT
Found at i:74125130 original size:20 final size:21
Alignment explanation
Indices: 74125105--74125144 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74125095 TGAATGCATA
*
74125105 TTTATAT-TTGTAATGTGAAC
1 TTTATATGTTGGAATGTGAAC
74125125 TTTATATGTTGGAATGTGAA
1 TTTATATGTTGGAATGTGAA
74125145 TGTGTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (21 bp):
TTTATATGTTGGAATGTGAAC
Found at i:74135508 original size:21 final size:21
Alignment explanation
Indices: 74135466--74135508 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
74135456 CTATAATGAT
**
74135466 AACTTACAAAATTTCTGGAAA
1 AACTTACAAAATTTCTACAAA
* *
74135487 AACTTAGAAAATTTTTACAAA
1 AACTTACAAAATTTCTACAAA
74135508 A
1 A
74135509 CACAGGCGAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.30
Consensus pattern (21 bp):
AACTTACAAAATTTCTACAAA
Found at i:74143959 original size:145 final size:145
Alignment explanation
Indices: 74143768--74144048 Score: 447
Period size: 145 Copynumber: 1.9 Consensus size: 145
74143758 AGTAACAAAT
*
74143768 TGATTGACATTATCAAGGAAAAAAATCAACAATTTATTTAATTGATTTTGATGTTCTAAAATTTA
1 TGATTGACATTATCAAGGAAAAAAATCAACAATTTATTTAACTGATTTTGATGTTCTAAAATTTA
* * * * * *
74143833 AAATTTCAATATTTATTTTTTTTTAGAATTTTCAACAATTGAATAAGTAAGTCCAATTTGACATT
66 AAATTTCAACATTGATTTTTGTTTAGAATTTTCAACAATGGAATAAGCAAGTCCAATTTGACA-A
74143898 AATTTCACTATTATAG
130 AATTTCACTATTATAG
* *
74143914 TGATTGGCCTTATCAAGG-AAAAAATCAACAATTTATTTAACTGATTTTGATGTTCTAAAATTTA
1 TGATTGACATTATCAAGGAAAAAAATCAACAATTTATTTAACTGATTTTGATGTTCTAAAATTTA
* *
74143978 AAGTTTCAACATTGATTTTTGTTTATAATTTTCAACAATGGAATAAGCAAGTCCAATTTGACAAA
66 AAATTTCAACATTGATTTTTGTTTAGAATTTTCAACAATGGAATAAGCAAGTCCAATTTGACAAA
74144043 ATTTCA
131 ATTTCA
74144049 ATGCATTATT
Statistics
Matches: 124, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
144 7 0.06
145 101 0.81
146 16 0.13
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (145 bp):
TGATTGACATTATCAAGGAAAAAAATCAACAATTTATTTAACTGATTTTGATGTTCTAAAATTTA
AAATTTCAACATTGATTTTTGTTTAGAATTTTCAACAATGGAATAAGCAAGTCCAATTTGACAAA
ATTTCACTATTATAG
Found at i:74146022 original size:12 final size:12
Alignment explanation
Indices: 74146005--74146029 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74145995 TGTGAATGCA
74146005 TTTTAATGGTGT
1 TTTTAATGGTGT
74146017 TTTTAATGGTGT
1 TTTTAATGGTGT
74146029 T
1 T
74146030 ACCAGGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (12 bp):
TTTTAATGGTGT
Found at i:74151026 original size:83 final size:83
Alignment explanation
Indices: 74150887--74151048 Score: 236
Period size: 83 Copynumber: 2.0 Consensus size: 83
74150877 GTCACGTGTG
* * * *
74150887 TAGTACTAAGTGCAGGCTACTACGTGCACCGGATAATTGGTCGCATGTGTAGTACTAAGTGTAGG
1 TAGTACTAAATGAAGGCTACTACGTGCACCGGATAATTGGTCGCATGTATAGTACTAAGTGCA-G
*
74150952 A-TACTATGCGTACCCGAA
65 ACTACTATGCATACCCGAA
* * *
74150970 TAGTACTAAATGAAGGCTACTACGTGTACTGGATAATTGGTTGCATGTATAGTACTAAGTGCAGA
1 TAGTACTAAATGAAGGCTACTACGTGCACCGGATAATTGGTCGCATGTATAGTACTAAGTGCAGA
74151035 CTACTATGCATACC
66 CTACTATGCATACC
74151049 AGATGGCTTT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
82 2 0.03
83 68 0.97
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (83 bp):
TAGTACTAAATGAAGGCTACTACGTGCACCGGATAATTGGTCGCATGTATAGTACTAAGTGCAGA
CTACTATGCATACCCGAA
Found at i:74156860 original size:46 final size:48
Alignment explanation
Indices: 74156788--74156890 Score: 138
Period size: 46 Copynumber: 2.2 Consensus size: 48
74156778 GACAGGACAG
* * * *
74156788 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
74156834 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
74156882 GACAAGAAT
1 GACAGGAAT
74156891 AATTCATGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
46 27 0.55
47 1 0.02
48 21 0.43
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:74163809 original size:19 final size:18
Alignment explanation
Indices: 74163785--74163828 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
74163775 GAAAAGTATC
74163785 GATACTTAAG-CAATGTACA
1 GATACTT-AGTCAA-GTACA
*
74163804 GATACTTAGTGAAGTACA
1 GATACTTAGTCAAGTACA
74163822 GATACTT
1 GATACTT
74163829 TAAGTAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (18 bp):
GATACTTAGTCAAGTACA
Found at i:74202928 original size:16 final size:15
Alignment explanation
Indices: 74202885--74202928 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
74202875 GAAAAGATAT
74202885 AATAAAATAAAATCA
1 AATAAAATAAAATCA
*
74202900 AATAAACTAAAAATCA
1 AATAAAAT-AAAATCA
74202916 AATAAAAATAAAA
1 AAT-AAAATAAAA
74202929 ATTTGTTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 7 0.28
16 14 0.56
17 4 0.16
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (15 bp):
AATAAAATAAAATCA
Found at i:74207443 original size:50 final size:49
Alignment explanation
Indices: 74207384--74207560 Score: 212
Period size: 50 Copynumber: 3.6 Consensus size: 49
74207374 AGTGCTAGTT
* * * *
74207384 TAAGACCATGTCTAGAACATGGCAACGGCACCAATA-GATAAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGC-CCAATATG-TGAGAGCCAGTG
* * * *
74207434 TAAGACCATGTTTGGGACATGGCATCGGCTTCAATATGTGAGGGCCAGTA
1 TAAGACCATGTCTGGGACATGGCATCGGC-CCAATATGTGAGAGCCAGTG
* *
74207484 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCC-CAATATGTGAGAGCCAGTG
*
74207534 CAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACATGGCATCG
74207561 ACTTTGATGT
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
50 108 0.99
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCCAATATGTGAGAGCCAGTG
Found at i:74207610 original size:98 final size:100
Alignment explanation
Indices: 74207384--74207610 Score: 264
Period size: 100 Copynumber: 2.3 Consensus size: 100
74207374 AGTGCTAGTT
* * * * * * *
74207384 TAAGACCATGTCTAGAACATGGCAACGGCAC-CAATA-GATAAGAGCCAGTGTAAGACCATGTTT
1 TAAGACCATGTCTGGGACATGGCATCGGC-CTCGATATG-TGAGAGCCAGTGCAAGACCATGTCT
* * * *
74207447 GGGACATGGCATCGGCTTCAATATGTGAGGGCCAGTA
64 GGGACATGGCATCGACTTCAATATATGAGAGCCAATA
*
74207484 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGAGTCAGTGCAAGACCATGTCTGG
1 TAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGAGCCAGTGCAAGACCATGTCTGG
** *
74207549 GACATGGCATCGACTTTGATGTAT-A-AGCCAATA
66 GACATGGCATCGACTTCAATATATGAGAGCCAATA
*
74207582 TAAGACCATGTCTGGGACATGGCGTCGGC
1 TAAGACCATGTCTGGGACATGGCATCGGC
74207611 ATCTTACCTT
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
98 34 0.31
99 2 0.02
100 72 0.66
101 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (100 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGAGCCAGTGCAAGACCATGTCTGG
GACATGGCATCGACTTCAATATATGAGAGCCAATA
Found at i:74212339 original size:27 final size:27
Alignment explanation
Indices: 74212309--74212523 Score: 232
Period size: 27 Copynumber: 8.0 Consensus size: 27
74212299 CCCTAATTGA
* *
74212309 TAAAATGACAATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
74212336 TAAAATGACTATTTTGGCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
74212363 TAAAATGACTATATTGCCTTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
74212390 TAAAATTACTGTTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
74212417 TAAAATGACTATTTTGTCATTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
74212444 TAAAATGACTGTTTTTCCCTTATGTGA
1 TAAAATGACTATTTTGCCCTTATGTGG
* * ** *
74212471 TAAAATGACTGTTTCGCGTTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* * *
74212498 TAAATTGACTGTTTTACCCTTATGTG
1 TAAAATGACTATTTTGCCCTTATGTG
74212524 ATATATGTTT
Statistics
Matches: 155, Mismatches: 33, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:74212391 original size:54 final size:54
Alignment explanation
Indices: 74212309--74212523 Score: 268
Period size: 54 Copynumber: 4.0 Consensus size: 54
74212299 CCCTAATTGA
* * * ** *
74212309 TAAAATGACAATTTTGCCCTTATATGGTAAAATGACTATTTTGGCCTTATATGG
1 TAAAATGACTATTTTGCCTTTATATGGTAAAATGACTGTTTTTCCCTTATGTGG
* * *
74212363 TAAAATGACTATATTGCCTTTATGTGGTAAAATTACTGTTTTTCCCTTATGTGG
1 TAAAATGACTATTTTGCCTTTATATGGTAAAATGACTGTTTTTCCCTTATGTGG
* * * *
74212417 TAAAATGACTATTTTGTCATTATGTGGTAAAATGACTGTTTTTCCCTTATGTGA
1 TAAAATGACTATTTTGCCTTTATATGGTAAAATGACTGTTTTTCCCTTATGTGG
* * * * *
74212471 TAAAATGACTGTTTCGCGTTTATATGGTAAATTGACTGTTTTACCCTTATGTG
1 TAAAATGACTATTTTGCCTTTATATGGTAAAATGACTGTTTTTCCCTTATGTG
74212524 ATATATGTTT
Statistics
Matches: 139, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 139 1.00
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (54 bp):
TAAAATGACTATTTTGCCTTTATATGGTAAAATGACTGTTTTTCCCTTATGTGG
Found at i:74217768 original size:17 final size:18
Alignment explanation
Indices: 74217736--74217774 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
74217726 TTCAAGTACA
74217736 TTTTCTTTTAAGTTTTT-
1 TTTTCTTTTAAGTTTTTG
* *
74217753 TTTTCTTTTCATTTTTTG
1 TTTTCTTTTAAGTTTTTG
74217771 TTTT
1 TTTT
74217775 GTTTGTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.08, C:0.08, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTCTTTTAAGTTTTTG
Found at i:74219144 original size:15 final size:15
Alignment explanation
Indices: 74219124--74219152 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74219114 AATAAGGTGA
74219124 ATTCTACTTTAGATT
1 ATTCTACTTTAGATT
74219139 ATTCTACTTTAGAT
1 ATTCTACTTTAGAT
74219153 ATAGAATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (15 bp):
ATTCTACTTTAGATT
Found at i:74228083 original size:45 final size:45
Alignment explanation
Indices: 74228019--74228109 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
74228009 GCCAAAAATG
* *
74228019 TGTCATATACATCATGAACTCAGGCCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
* *
74228064 TGTCACATATATCATGAACTCAGACTACAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
74228109 T
1 T
74228110 CGCATAGTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.26
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:74232161 original size:21 final size:21
Alignment explanation
Indices: 74232135--74232201 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
74232125 AAAACTATTT
*
74232135 ATCTTTGACTAATCTTAACAA
1 ATCTTTGACTAATCTTAATAA
** * **
74232156 ATCTTTCCCTAAAC-T-ATTT
1 ATCTTTGACTAATCTTAATAA
74232175 ATCTTTGACTAATCTTAATAA
1 ATCTTTGACTAATCTTAATAA
74232196 ATCTTT
1 ATCTTT
74232202 CCCTAGTGTT
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
19 12 0.36
20 2 0.06
21 19 0.58
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.45
Consensus pattern (21 bp):
ATCTTTGACTAATCTTAATAA
Found at i:74232181 original size:40 final size:40
Alignment explanation
Indices: 74232126--74232206 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
74232116 GTTTTAGGCA
74232126 AAACTATTTATCTTTGACTAATCTTAACAAATCTTTCCCT
1 AAACTATTTATCTTTGACTAATCTTAACAAATCTTTCCCT
*
74232166 AAACTATTTATCTTTGACTAATCTTAATAAATCTTTCCCT
1 AAACTATTTATCTTTGACTAATCTTAACAAATCTTTCCCT
74232206 A
1 A
74232207 GTGTTTTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.21, G:0.02, T:0.43
Consensus pattern (40 bp):
AAACTATTTATCTTTGACTAATCTTAACAAATCTTTCCCT
Found at i:74232186 original size:19 final size:19
Alignment explanation
Indices: 74232126--74232186 Score: 50
Period size: 19 Copynumber: 3.1 Consensus size: 19
74232116 GTTTTAGGCA
74232126 AAACTATTTATCTTTGACT
1 AAACTATTTATCTTTGACT
* *** **
74232145 AATCTTAACAAATCTTTCCCT
1 AAAC-T-ATTTATCTTTGACT
74232166 AAACTATTTATCTTTGACT
1 AAACTATTTATCTTTGACT
74232185 AA
1 AA
74232187 TCTTAATAAA
Statistics
Matches: 28, Mismatches: 12, Indels: 4
0.64 0.27 0.09
Matches are distributed among these distances:
19 14 0.50
20 2 0.07
21 12 0.43
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.43
Consensus pattern (19 bp):
AAACTATTTATCTTTGACT
Done.