Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 24 of 313
Found at i:8209343 original size:27 final size:27
Alignment explanation
Indices: 8209313--8209510 Score: 191
Period size: 27 Copynumber: 7.3 Consensus size: 27
8209303 TACTGAAATG
* *
8209313 CCCTCAATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
8209340 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * **
8209367 CCCTTGATTTACAAAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
8209394 CCCTTGATTTATAGAATTACAATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
8209421 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
8209448 CCCTTGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * **
8209475 CCCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
*
8209502 CCATCGATT
1 CCCTCGATT
8209511 GTGAAATTAC
Statistics
Matches: 143, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 1 0.01
27 141 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:8209388 original size:81 final size:81
Alignment explanation
Indices: 8209293--8209467 Score: 251
Period size: 81 Copynumber: 2.2 Consensus size: 81
8209283 ATACTATTGG
* * * *
8209293 TTTACAGAATTACTGAAATGCCCTCAATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATT
1 TTTACAAAATTACTGAAATACCCTCAATTTATAGAATTACAATTTTACCCTCGATTTATAGAATT
*
8209358 ATCGTTTCACCCTTGA
66 ACCGTTTCACCCTTGA
*** **
8209374 TTTACAAAATTACTGTTTTACCCTTGATTTATAGAATTACAATTTTACCCTCGATTTATAGAATT
1 TTTACAAAATTACTGAAATACCCTCAATTTATAGAATTACAATTTTACCCTCGATTTATAGAATT
*
8209439 ACCGTTTTACCCTTGA
66 ACCGTTTCACCCTTGA
8209455 TTTACAAAATTAC
1 TTTACAAAATTAC
8209468 CATTTTACCC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.41
Consensus pattern (81 bp):
TTTACAAAATTACTGAAATACCCTCAATTTATAGAATTACAATTTTACCCTCGATTTATAGAATT
ACCGTTTCACCCTTGA
Found at i:8209474 original size:81 final size:81
Alignment explanation
Indices: 8209319--8209478 Score: 266
Period size: 81 Copynumber: 2.0 Consensus size: 81
8209309 AATGCCCTCA
* * *
8209319 ATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTCACCCTTGATTTACAAAAT
1 ATTTATAGAATTACAATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTTGATTTACAAAAT
**
8209384 TACTGTTTTACCCTTG
66 TACCATTTTACCCTTG
*
8209400 ATTTATAGAATTACAATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAAAAT
1 ATTTATAGAATTACAATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTTGATTTACAAAAT
8209465 TACCATTTTACCCT
66 TACCATTTTACCCT
8209479 CAGTTTACAA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (81 bp):
ATTTATAGAATTACAATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTTGATTTACAAAAT
TACCATTTTACCCTTG
Found at i:8209493 original size:81 final size:81
Alignment explanation
Indices: 8209327--8209510 Score: 253
Period size: 81 Copynumber: 2.3 Consensus size: 81
8209317 CAATTTGTAG
* * **
8209327 AATTACCATTTTACCCTCGATTTATAGAATTATCGTTTCACCCTTGATTTACAAAATTACTGTTT
1 AATTACAATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTTGATTTACAAAATTACCATTT
* * *
8209392 TACCCTTGATTTATAG
66 TACCCTAGATTTACAA
*
8209408 AATTACAATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTTGATTTACAAAATTACCATTT
1 AATTACAATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTTGATTTACAAAATTACCATTT
8209473 TACCCTCAG-TTTACAA
66 TACCCT-AGATTTACAA
** *
8209489 AATTACTGTTTTACCATCGATT
1 AATTACAATTTTACCCTCGATT
8209511 GTGAAATTAC
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
81 90 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (81 bp):
AATTACAATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTTGATTTACAAAATTACCATTT
TACCCTAGATTTACAA
Found at i:8209553 original size:27 final size:27
Alignment explanation
Indices: 8209515--8210023 Score: 689
Period size: 27 Copynumber: 18.9 Consensus size: 27
8209505 TCGATTGTGA
* * *
8209515 AATTACTGAAATACCCCCGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
8209542 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
8209569 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
*
8209596 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
8209623 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
8209650 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
8209677 AATTACCGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
8209704 AATTATCGCAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8209731 AATTACCGAAACACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
8209758 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
8209785 AATTATTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
8209812 AATTACCGAAATACTCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
8209839 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
8209866 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
8209893 AATTATCGCAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8209920 AATTACCGAAACACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
8209947 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
8209974 AATTATTGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
8210001 AATTACCGAAATACTCCTGTAGG
1 AATTACCGAAATACCCCTGTAGG
8210024 CGAATTTGAT
Statistics
Matches: 428, Mismatches: 52, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 2 0.00
27 424 0.99
28 2 0.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:8210631 original size:27 final size:27
Alignment explanation
Indices: 8210601--8210702 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
8210591 ATTCTGTTAA
* *
8210601 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
8210628 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
8210655 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
8210682 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
8210703 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:8210877 original size:6 final size:6
Alignment explanation
Indices: 8210839--8210956 Score: 87
Period size: 6 Copynumber: 19.0 Consensus size: 6
8210829 TTGCATTCAC
* * * *
8210839 ATTCTG ATATTTG ATTCTG TTATCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG AT-TCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
8210889 -TTACCTG ATACTG ATTCTG ATACTG ATTCTG ATTCTG ATTTTG -TCACCTA
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
8210939 ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG
8210957 TCACCTAATT
Statistics
Matches: 86, Mismatches: 18, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
5 3 0.03
6 67 0.78
7 14 0.16
8 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:8210886 original size:31 final size:31
Alignment explanation
Indices: 8210839--8210927 Score: 126
Period size: 31 Copynumber: 2.9 Consensus size: 31
8210829 TTGCATTCAC
8210839 ATTCTGATATTTGATTCTGTTATCTGATACTG
1 ATTCTGAT-TTTGATTCTGTTATCTGATACTG
*
8210871 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTATCTGATACTG
** *
8210902 ATTCTGATACTGATTCTGAT-TCTGAT
1 ATTCTGATTTTGATTCTGTTATCTGAT
8210928 TTTGTCACCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
30 5 0.10
31 39 0.75
32 8 0.15
ACGTcount: A:0.21, C:0.15, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTATCTGATACTG
Found at i:8210909 original size:43 final size:43
Alignment explanation
Indices: 8210861--8210952 Score: 139
Period size: 43 Copynumber: 2.1 Consensus size: 43
8210851 GATTCTGTTA
* * *
8210861 TCTGATACTGATTCTGATTTTGATTCTGTTACCTGATACTGAT
1 TCTGATACTGATTCTGATTCTGATTCTGTCACCTAATACTGAT
* *
8210904 TCTGATACTGATTCTGATTCTGATTTTGTCACCTAATTCTGAT
1 TCTGATACTGATTCTGATTCTGATTCTGTCACCTAATACTGAT
8210947 TCTGAT
1 TCTGAT
8210953 TCTGTCACCT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (43 bp):
TCTGATACTGATTCTGATTCTGATTCTGTCACCTAATACTGAT
Found at i:8210981 original size:25 final size:25
Alignment explanation
Indices: 8210893--8210974 Score: 105
Period size: 25 Copynumber: 3.3 Consensus size: 25
8210883 ATTCTGTTAC
* *
8210893 CTGATACTGATTCTGAT-A-CTGATT
1 CTGATTCTGATTCTG-TCACCTAATT
*
8210917 CTGATTCTGATTTTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATT
8210942 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATT
*
8210967 TTGATTCT
1 CTGATTCT
8210975 AGTTCTGATA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 36 0.71
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATT
Found at i:8212351 original size:27 final size:27
Alignment explanation
Indices: 8212321--8212472 Score: 189
Period size: 27 Copynumber: 5.6 Consensus size: 27
8212311 TTAGTTTACC
8212321 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
8212348 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
8212375 AAATTATCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
8212402 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* **
8212429 AAATTACCAAAATACCCCTGATTTAAA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
8212456 AAATTATAAAAATACCC
1 AAATTACCAAAATACCC
8212473 TTGACTTTTT
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 3 0.03
27 101 0.94
28 4 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:8212491 original size:29 final size:27
Alignment explanation
Indices: 8212329--8212500 Score: 85
Period size: 27 Copynumber: 6.3 Consensus size: 27
8212319 CCAAATTACC
* ** **
8212329 AAAATACCCCTGGTTTGTAAAATTACC
1 AAAATACCCCTGATTTAAAAAATTATA
* ** *
8212356 AAAATACCCCTGGTTTGTAAAATTATC
1 AAAATACCCCTGATTTAAAAAATTATA
* * *** **
8212383 AAAATACCACTGGTTTGTGAAATTACC
1 AAAATACCCCTGATTTAAAAAATTATA
* * ** **
8212410 GAAATA-CCCTCAATTTGTAAAATTACC
1 AAAATACCCCT-GATTTAAAAAATTATA
8212437 AAAATACCCCTGATTTAAAAAATTATA
1 AAAATACCCCTGATTTAAAAAATTATA
* *
8212464 AAAATACCCTTGACTTTTTAAAAATTATA
1 AAAATACCCCTGA--TTTAAAAAATTATA
*
8212493 GAAATACC
1 AAAATACC
8212501 ATTGGTTTAC
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.02
27 96 0.78
28 4 0.03
29 20 0.16
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATACCCCTGATTTAAAAAATTATA
Found at i:8212556 original size:27 final size:27
Alignment explanation
Indices: 8212526--8212664 Score: 154
Period size: 27 Copynumber: 5.1 Consensus size: 27
8212516 TACTGAAATG
* *
8212526 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
8212553 CCCTCAATTTATAAAATTACCGTTTCA
1 CCCTCGATTTATAAAATTACCATTTTA
* * **
8212580 CCCTCGAATTACAAAATTACTGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
8212607 CCCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* **
8212634 CCCTCTG-TTTACAAAATTACTGTTTTA
1 CCCTC-GATTTATAAAATTACCATTTTA
8212661 CCCT
1 CCCT
8212665 TAATTGTGAA
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
27 93 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:8212571 original size:110 final size:110
Alignment explanation
Indices: 8212321--8212547 Score: 262
Period size: 110 Copynumber: 2.1 Consensus size: 110
8212311 TTAGTTTACC
** ** ** * * *
8212321 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTG-GTTTGT-AAAATTATCA
1 AAATTACCAAAATACCCCTAATTTAAAAAATTATAAAAATACCCTTGACTTTTTAAAAATTATCA
***
8212384 AAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTA
66 AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTA
*
8212429 AAATTACCAAAATACCCCTGATTTAAAAAATTATAAAAATACCCTTGACTTTTTAAAAATTAT-A
1 AAATTACCAAAATACCCCTAATTTAAAAAATTATAAAAATACCCTTGACTTTTTAAAAATTATCA
* * * *
8212493 GAAATACCATTGGTTTACAAAATTACTGAAATGCCCTCGATTTGTA
66 -AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTA
*
8212539 GAATTACCA
1 AAATTACCA
8212548 TTTTACCCTC
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
108 41 0.41
109 5 0.05
110 54 0.54
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (110 bp):
AAATTACCAAAATACCCCTAATTTAAAAAATTATAAAAATACCCTTGACTTTTTAAAAATTATCA
AAATACCACTGGTTTACAAAATTACCGAAATACCCTCAATTTGTA
Found at i:8212601 original size:81 final size:81
Alignment explanation
Indices: 8212507--8212689 Score: 224
Period size: 81 Copynumber: 2.3 Consensus size: 81
8212497 TACCATTGGT
* * * *
8212507 TTACAAAATTACTGAAATGCCCTCGATTTGTAGAATTACCATTTTACCCTCAATTTATAAAATTA
1 TTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTA
8212572 CCGTTTCACCCTCGAA
66 CCGTTTCACCCTCGAA
*** **
8212588 TTACAAAATTACTGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTCTGTTTACAAAATTA
1 TTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTA
* * *
8212653 CTGTTTTACCCT-TAA
66 CCGTTTCACCCTCGAA
***
8212668 TTGTGAAATTACTGAAATACCC
1 TTACAAAATTACTGAAATACCC
8212690 CTGTAGGATA
Statistics
Matches: 84, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
80 18 0.21
81 66 0.79
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.38
Consensus pattern (81 bp):
TTACAAAATTACTGAAATACCCTCGATTTATAAAATTACCATTTTACCCTCAATTTACAAAATTA
CCGTTTCACCCTCGAA
Found at i:8212704 original size:27 final size:27
Alignment explanation
Indices: 8212674--8213002 Score: 353
Period size: 27 Copynumber: 12.3 Consensus size: 27
8212664 TTAATTGTGA
* *
8212674 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
8212701 AATTA-CAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* ** *
8212727 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
8212754 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
8212781 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
8212808 AATTATCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
8212835 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
8212862 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8212889 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
8212916 AATTATCGAAATTCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** *
8212943 AATTATTAAAATACCCCTGTGGGGT-G
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
8212969 AAATTACCGAGATA-CCTTGTGGGGTAA
1 -AATTACCGAAATACCCCTGTAGGGTAG
8212996 AATTACC
1 AATTACC
8213003 ATTTTGCCCC
Statistics
Matches: 267, Mismatches: 30, Indels: 11
0.87 0.10 0.04
Matches are distributed among these distances:
26 37 0.14
27 230 0.86
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:8213481 original size:22 final size:22
Alignment explanation
Indices: 8213429--8213493 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
8213419 TTAAAGCCTT
* *
8213429 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
8213451 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
8213473 CTGATTATGGCTCTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
8213494 ACGTATTTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:8213682 original size:27 final size:27
Alignment explanation
Indices: 8213652--8213753 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
8213642 ATTCTGTTAA
* *
8213652 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
8213679 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
8213706 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
8213733 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
8213754 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:8213928 original size:6 final size:6
Alignment explanation
Indices: 8213890--8214007 Score: 89
Period size: 6 Copynumber: 19.0 Consensus size: 6
8213880 TTGCATTCAC
* * *
8213890 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
8213940 -TTACCTG ATACTG ATTCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
8213990 ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG
8214008 TCACCTAATT
Statistics
Matches: 88, Mismatches: 14, Indels: 20
0.72 0.11 0.16
Matches are distributed among these distances:
5 5 0.06
6 67 0.76
7 13 0.15
8 3 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:8213936 original size:31 final size:31
Alignment explanation
Indices: 8213890--8213970 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
8213880 TTGCATTCAC
8213890 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
8213922 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
**
8213953 ATTCTGATACTGATTCTG
1 ATTCTGATTTTGATTCTG
8213971 ATTCTGATTC
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
31 40 0.85
32 7 0.15
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:8213947 original size:25 final size:25
Alignment explanation
Indices: 8213890--8214025 Score: 111
Period size: 25 Copynumber: 5.4 Consensus size: 25
8213880 TTGCATTCAC
* *
8213890 ATTCTGATTTTTGATTCTGTTACCTG
1 ATTCTGA-TTCTGATTCTGTCACCTG
* * *
8213916 ATACTGATTCTGATT-T-TGATTCTG
1 ATTCTGATTCTGATTCTGTCA-CCTG
*
8213940 -TTACCTGATACTGATTCTGAT-A-CTG
1 ATT--CTGATTCTGATTCTG-TCACCTG
*
8213965 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
*
8213990 ATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
*
8214015 ATTTTGATTCT
1 ATTCTGATTCT
8214026 AGTTCTGATA
Statistics
Matches: 92, Mismatches: 9, Indels: 19
0.77 0.08 0.16
Matches are distributed among these distances:
23 4 0.04
24 19 0.21
25 58 0.63
26 9 0.10
27 1 0.01
28 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:8213961 original size:43 final size:43
Alignment explanation
Indices: 8213913--8214003 Score: 146
Period size: 43 Copynumber: 2.1 Consensus size: 43
8213903 ATTCTGTTAC
* * *
8213913 CTGATACTGATTCTGATTTTGATTCTGTTACCTGATACTGATT
1 CTGATACTGATTCTGATTCTGATTCTGTCACCTAATACTGATT
*
8213956 CTGATACTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATACTGATTCTGATTCTGATTCTGTCACCTAATACTGATT
8213999 CTGAT
1 CTGAT
8214004 TCTGTCACCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.45
Consensus pattern (43 bp):
CTGATACTGATTCTGATTCTGATTCTGTCACCTAATACTGATT
Found at i:8214032 original size:25 final size:25
Alignment explanation
Indices: 8213944--8214025 Score: 114
Period size: 25 Copynumber: 3.3 Consensus size: 25
8213934 ATTCTGTTAC
* *
8213944 CTGATACTGATTCTGAT-A-CTGATT
1 CTGATTCTGATTCTG-TCACCTAATT
8213968 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATT
8213993 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATT
*
8214018 TTGATTCT
1 CTGATTCT
8214026 AGTTCTGATA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 1 0.02
24 15 0.28
25 37 0.70
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATT
Found at i:8214032 original size:31 final size:31
Alignment explanation
Indices: 8213962--8214034 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 31
8213952 GATTCTGATA
8213962 CTGATTCT-GATTCTGATTCTGTCACCTAATT
1 CTGATTCTAG-TTCTGATTCTGTCACCTAATT
8213993 CTG-----A-TTCTGATTCTGTCACCTAATT
1 CTGATTCTAGTTCTGATTCTGTCACCTAATT
*
8214018 TTGATTCTAGTTCTGAT
1 CTGATTCTAGTTCTGAT
8214035 AATGTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
25 23 0.68
30 1 0.03
31 10 0.29
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.47
Consensus pattern (31 bp):
CTGATTCTAGTTCTGATTCTGTCACCTAATT
Found at i:8217211 original size:20 final size:20
Alignment explanation
Indices: 8217186--8217227 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8217176 TCTAAACATA
*
8217186 TAAATGGTTTAATTACCTTT
1 TAAATGGTTTAATTACCATT
8217206 TAAATGGTTTAATTACCATT
1 TAAATGGTTTAATTACCATT
8217226 TA
1 TA
8217228 TGGCTACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (20 bp):
TAAATGGTTTAATTACCATT
Found at i:8217481 original size:18 final size:19
Alignment explanation
Indices: 8217440--8217481 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
8217430 TATGTGTACT
*
8217440 TTTTTTTTCCTTCACAAGG
1 TTTTTTTTCCTCCACAAGG
* *
8217459 ATTTTTTTCC-CCACAGGG
1 TTTTTTTTCCTCCACAAGG
8217477 TTTTT
1 TTTTT
8217482 ATCTTAGTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.14, C:0.21, G:0.12, T:0.52
Consensus pattern (19 bp):
TTTTTTTTCCTCCACAAGG
Found at i:8219828 original size:27 final size:27
Alignment explanation
Indices: 8219777--8219829 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
8219767 TATCACATAG
*
8219777 GGGAAAAACAGTCATCTTACCATATAA
1 GGGAAAAACAGTCATCTTACAATATAA
* * *
8219804 GGGAAAAATAGTCATTTTATAATATA
1 GGGAAAAACAGTCATCTTACAATATA
8219830 TAAGGGGTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.28
Consensus pattern (27 bp):
GGGAAAAACAGTCATCTTACAATATAA
Found at i:8223580 original size:28 final size:27
Alignment explanation
Indices: 8223516--8223695 Score: 279
Period size: 28 Copynumber: 6.6 Consensus size: 27
8223506 ATATTAAGTC
* *
8223516 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
8223543 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
8223571 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
8223598 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
8223626 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
8223654 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
8223681 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8223696 GCACAATTTA
Statistics
Matches: 143, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
27 66 0.46
28 76 0.53
29 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:8223600 original size:55 final size:55
Alignment explanation
Indices: 8223516--8223695 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
8223506 ATATTAAGTC
* * *
8223516 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
8223571 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
* *
8223626 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATATTCA-ATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCATACT
8223681 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8223696 GCACAATTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
Found at i:8223655 original size:83 final size:82
Alignment explanation
Indices: 8223516--8223695 Score: 297
Period size: 83 Copynumber: 2.2 Consensus size: 82
8223506 ATATTAAGTC
* * *
8223516 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
8223581 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
8223598 CGCACACTTAGTGCTACATAATCATACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
* *
8223663 AGTGCTACATATTCAATT
65 AGTGCTACATAGTCAACT
8223681 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8223696 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 22 0.24
83 69 0.76
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:8232718 original size:27 final size:27
Alignment explanation
Indices: 8232688--8232975 Score: 486
Period size: 27 Copynumber: 10.6 Consensus size: 27
8232678 ATATTAAGTC
* * *
8232688 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
8232715 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
8232743 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
8232771 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
8232798 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
8232825 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
8232852 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
8232879 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
8232906 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
* *
8232934 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
8232961 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8232976 GCACAATTTA
Statistics
Matches: 254, Mismatches: 5, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
27 174 0.69
28 80 0.31
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:8235840 original size:9 final size:9
Alignment explanation
Indices: 8235826--8235856 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8235816 GTAGTGTGTG
*
8235826 TGAAATACA
1 TGAAATGCA
8235835 TGAAATGCA
1 TGAAATGCA
8235844 TGAAATGCA
1 TGAAATGCA
8235853 TGAA
1 TGAA
8235857 GCAAGAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.23
Consensus pattern (9 bp):
TGAAATGCA
Found at i:8240948 original size:20 final size:20
Alignment explanation
Indices: 8240923--8240964 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
8240913 AGAAAAAGAT
8240923 AATGGTACGTGGATGTAAGC
1 AATGGTACGTGGATGTAAGC
8240943 AATGGTACGTGGATGTAAGC
1 AATGGTACGTGGATGTAAGC
8240963 AA
1 AA
8240965 CAGAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.10, G:0.33, T:0.24
Consensus pattern (20 bp):
AATGGTACGTGGATGTAAGC
Found at i:8251358 original size:21 final size:20
Alignment explanation
Indices: 8251334--8251375 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
8251324 AGCATGTATT
*
8251334 TGAATGATTGATGATAGATTA
1 TGAATGATTAATGATAG-TTA
*
8251355 TGAATGTTTAATGATAGTTA
1 TGAATGATTAATGATAGTTA
8251375 T
1 T
8251376 ACAAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (20 bp):
TGAATGATTAATGATAGTTA
Found at i:8262820 original size:29 final size:29
Alignment explanation
Indices: 8262788--8262976 Score: 195
Period size: 29 Copynumber: 6.6 Consensus size: 29
8262778 GATTAAGCTA
* *
8262788 ATGGGTCATATGAATATGAATTGGGCCTG
1 ATGGGCCATATGAATGTGAATTGGGCCTG
* * * *
8262817 ATGGGCCATATGAACGTGAATTGTGTCGG
1 ATGGGCCATATGAATGTGAATTGGGCCTG
* * * *
8262846 ATGGGTCAAATAAATGTG-ATTGGGCCTA
1 ATGGGCCATATGAATGTGAATTGGGCCTG
8262874 ATGGGCCATATGAATGTGAATTGGGCCTG
1 ATGGGCCATATGAATGTGAATTGGGCCTG
* * *
8262903 ATAGGCCATATGAACGTGAATTGGGCCGG
1 ATGGGCCATATGAATGTGAATTGGGCCTG
* * *
8262932 ATGGGCCATATAAATGAG-ATTGGGTCT-
1 ATGGGCCATATGAATGTGAATTGGGCCTG
*
8262959 AGTGGGCCATATGCATGT
1 A-TGGGCCATATGAATGT
8262977 ATGTAGCGGT
Statistics
Matches: 128, Mismatches: 30, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
27 1 0.01
28 41 0.32
29 86 0.67
ACGTcount: A:0.27, C:0.13, G:0.32, T:0.28
Consensus pattern (29 bp):
ATGGGCCATATGAATGTGAATTGGGCCTG
Found at i:8262871 original size:57 final size:58
Alignment explanation
Indices: 8262788--8262942 Score: 195
Period size: 57 Copynumber: 2.7 Consensus size: 58
8262778 GATTAAGCTA
* * *
8262788 ATGGGTCATATGAATATGAATTGGGCCTGATGGGCCATATGAACGTGAATTGTGTCGG
1 ATGGGTCATATGAATGTGAATTGGGCCTGATGGGCCATATGAACGTGAATTGGGCCGG
* * * * *
8262846 ATGGGTCAAATAAATGTG-ATTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTG
1 ATGGGTCATATGAATGTGAATTGGGCCTGATGGGCCATATGAACGTGAATTGGGCCGG
* * * *
8262903 ATAGGCCATATGAACGTGAATTGGGCCGGATGGGCCATAT
1 ATGGGTCATATGAATGTGAATTGGGCCTGATGGGCCATAT
8262943 AAATGAGATT
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
57 47 0.58
58 34 0.42
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (58 bp):
ATGGGTCATATGAATGTGAATTGGGCCTGATGGGCCATATGAACGTGAATTGGGCCGG
Found at i:8262886 original size:86 final size:86
Alignment explanation
Indices: 8262752--8262971 Score: 307
Period size: 86 Copynumber: 2.6 Consensus size: 86
8262742 ATAATGAGAT
* * ** *
8262752 TTGGGCCGGATAGGCCATATAAATGAGATTAAG-CTAATGGGTCATATGAATATGAATTGGGCCT
1 TTGGGCCGGATGGGCCAAATAAATGAGATTGGGCCTAATGGGCCATATGAATATGAATTGGGCCT
*
8262816 GATGGGCCATATGAACGTGAA
66 GATAGGCCATATGAACGTGAA
* * * * *
8262837 TTGTGTCGGATGGGTCAAATAAATGTGATTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCT
1 TTGGGCCGGATGGGCCAAATAAATGAGATTGGGCCTAATGGGCCATATGAATATGAATTGGGCCT
8262902 GATAGGCCATATGAACGTGAA
66 GATAGGCCATATGAACGTGAA
* * *
8262923 TTGGGCCGGATGGGCCATATAAATGAGATTGGGTCTAGTGGGCCATATG
1 TTGGGCCGGATGGGCCAAATAAATGAGATTGGGCCTAATGGGCCATATG
8262972 CATGTATGTA
Statistics
Matches: 116, Mismatches: 18, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 25 0.22
86 91 0.78
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (86 bp):
TTGGGCCGGATGGGCCAAATAAATGAGATTGGGCCTAATGGGCCATATGAATATGAATTGGGCCT
GATAGGCCATATGAACGTGAA
Found at i:8267407 original size:29 final size:28
Alignment explanation
Indices: 8267328--8267552 Score: 203
Period size: 29 Copynumber: 7.9 Consensus size: 28
8267318 TGAATATAAT
* * *
8267328 GTGATTTGGGCCGGATGGGCCACAT-AA
1 GTGAATTGGGCCTGATGGGCCATATGAA
* *
8267355 ATGAGATTGGGCCT-ATGGGACATATGAA
1 GTGA-ATTGGGCCTGATGGGCCATATGAA
8267383 CGTGAATTGGGCCTGATGGGCCATATGAA
1 -GTGAATTGGGCCTGATGGGCCATATGAA
8267412 CGTGAATTGGG-CTGGATGGGCCATAT-AA
1 -GTGAATTGGGCCT-GATGGGCCATATGAA
* * *
8267440 ATAAGATTGGGCCTAATGGGCCATATGAA
1 GTGA-ATTGGGCCTGATGGGCCATATGAA
* *
8267469 TGTGAATTGGGCCTAATGGGTCATATGAA
1 -GTGAATTGGGCCTGATGGGCCATATGAA
8267498 CGTGAATTGGGCC-GAATGGGCCATAT-AA
1 -GTGAATTGGGCCTG-ATGGGCCATATGAA
* *
8267526 ATGAGATTGGGTCT-AGTGGGCCATATG
1 GTGA-ATTGGGCCTGA-TGGGCCATATG
8267553 CATGTATGTA
Statistics
Matches: 166, Mismatches: 18, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
27 18 0.11
28 58 0.35
29 88 0.53
30 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.25
Consensus pattern (28 bp):
GTGAATTGGGCCTGATGGGCCATATGAA
Found at i:8267488 original size:57 final size:57
Alignment explanation
Indices: 8267333--8267552 Score: 198
Period size: 57 Copynumber: 3.9 Consensus size: 57
8267323 ATAATGTGAT
** * * * * * *
8267333 TTGGGCCGGATGGGCCACATAAATGAG-ATTGGGCCT-ATGGGACATATGAACGTGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAATTGGG-CTAATGGGCCATATGAACATAAA
* * *
8267389 TTGGGCCTGATGGGCCATATGAACGTGAATTGGGCTGGATGGGCCATAT-AA-ATAAGA
1 TTGGGCCTAATGGGCCATATGAATGTGAATTGGGCT-AATGGGCCATATGAACATAA-A
* * *
8267446 TTGGGCCTAATGGGCCATATGAATGTGAATTGGGCCTAATGGGTCATATGAACGTGAA
1 TTGGGCCTAATGGGCCATATGAATGTGAATTGGG-CTAATGGGCCATATGAACATAAA
* * * *
8267504 TTGGGCCGAATGGGCCATATAAATGAG-ATTGGGTCTAGTGGGCCATATG
1 TTGGGCCTAATGGGCCATATGAATGTGAATTGGG-CTAATGGGCCATATG
8267553 CATGTATGTA
Statistics
Matches: 137, Mismatches: 20, Indels: 13
0.81 0.12 0.08
Matches are distributed among these distances:
56 26 0.19
57 70 0.51
58 39 0.28
59 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (57 bp):
TTGGGCCTAATGGGCCATATGAATGTGAATTGGGCTAATGGGCCATATGAACATAAA
Found at i:8267494 original size:86 final size:86
Alignment explanation
Indices: 8267328--8267557 Score: 345
Period size: 86 Copynumber: 2.7 Consensus size: 86
8267318 TGAATATAAT
* * * *
8267328 GTGATTTGGGCCGGATGGGCCACATAAATGAGATTGGGCCT-ATGGGACATATGAACGTGAATTG
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGTGAATTG
*
8267392 GGCCTGATGGGCCATATGAAC
66 GGCCTAATGGGCCATATGAAC
* *
8267413 GTGAATTGGGCTGGATGGGCCATATAAATAAGATTGGGCCTAATGGGCCATATGAATGTGAATTG
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGTGAATTG
*
8267478 GGCCTAATGGGTCATATGAAC
66 GGCCTAATGGGCCATATGAAC
* * * *
8267499 GTGAATTGGGCCGAATGGGCCATATAAATGAGATTGGGTCTAGTGGGCCATATGCATGT
1 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGT
8267558 ATGTAGCGGT
Statistics
Matches: 130, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
85 37 0.28
86 93 0.72
ACGTcount: A:0.27, C:0.14, G:0.33, T:0.26
Consensus pattern (86 bp):
GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAATGTGAATTG
GGCCTAATGGGCCATATGAAC
Found at i:8270568 original size:13 final size:13
Alignment explanation
Indices: 8270550--8270616 Score: 80
Period size: 13 Copynumber: 5.2 Consensus size: 13
8270540 CAGGGCTTCC
8270550 TCACACAGGCGTG
1 TCACACAGGCGTG
*
8270563 TCACACGGGCGTG
1 TCACACAGGCGTG
**
8270576 TCACATGGGCGTG
1 TCACACAGGCGTG
8270589 TCACACAGGCGTG
1 TCACACAGGCGTG
* * *
8270602 CCACATAGCCGTG
1 TCACACAGGCGTG
8270615 TC
1 TC
8270617 CATTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (13 bp):
TCACACAGGCGTG
Found at i:8270579 original size:26 final size:26
Alignment explanation
Indices: 8270550--8270616 Score: 89
Period size: 26 Copynumber: 2.6 Consensus size: 26
8270540 CAGGGCTTCC
* *
8270550 TCACACAGGCGTGTCACACGGGCGTG
1 TCACATAGGCGTGTCACACAGGCGTG
*
8270576 TCACATGGGCGTGTCACACAGGCGTG
1 TCACATAGGCGTGTCACACAGGCGTG
* *
8270602 CCACATAGCCGTGTC
1 TCACATAGGCGTGTC
8270617 CATTTGGCAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (26 bp):
TCACATAGGCGTGTCACACAGGCGTG
Found at i:8279098 original size:48 final size:48
Alignment explanation
Indices: 8279010--8279148 Score: 145
Period size: 48 Copynumber: 2.9 Consensus size: 48
8279000 TACCATGGTT
* * * * * **
8279010 ATACGTGTAACGTGGTGCTAAGTGGAGATAACACGATTACACATCTTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCA
* * *
8279058 ATACATGTAACGTAGTGCTAAGTGGATATGCCACGGTTACATATATCA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCA
* * * *
8279106 ATTCAT-TAACATGGTGCTAAGTGGATATACAACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
8279149 GTAACGTGGT
Statistics
Matches: 74, Mismatches: 17, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
47 31 0.42
48 43 0.58
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATCA
Found at i:8282111 original size:15 final size:15
Alignment explanation
Indices: 8282091--8282143 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
8282081 GTATCTTGGG
8282091 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
8282106 TTTCTTTATTTTGGG
1 TTTCTTTATTCTGGA
* *
8282121 TTTCTCTA-TCTTGAA
1 TTTCTTTATTC-TGGA
8282136 TTTCTTTA
1 TTTCTTTA
8282144 CTTAGTTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 1 0.03
15 29 0.97
ACGTcount: A:0.13, C:0.13, G:0.11, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:8282120 original size:30 final size:30
Alignment explanation
Indices: 8282086--8282143 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8282076 GTACCGTATC
* *
8282086 TTGGGTTTCTTTAT-TCTGGATTTCTTTATT
1 TTGGGTTTCTCTATCT-TGAATTTCTTTATT
8282116 TTGGGTTTCTCTATCTTGAATTTCTTTA
1 TTGGGTTTCTCTATCTTGAATTTCTTTA
8282144 CTTAGTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.12, C:0.12, G:0.16, T:0.60
Consensus pattern (30 bp):
TTGGGTTTCTCTATCTTGAATTTCTTTATT
Found at i:8284789 original size:38 final size:38
Alignment explanation
Indices: 8284734--8284844 Score: 159
Period size: 38 Copynumber: 2.9 Consensus size: 38
8284724 ATGGTAAAAT
*
8284734 GTGGTGCTAAGTGGATATACCACAGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACAGTTATACATGTAAC
* * *
8284772 GTGGTGCTAAGTTGATATACCACCGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACAGTTATACATGTAAC
* * *
8284810 GTAGTGCTAAGTGGATATGCCACGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACAGTTATACATGT
8284845 TAATTTGCAA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACAGTTATACATGTAAC
Found at i:8287620 original size:79 final size:82
Alignment explanation
Indices: 8287509--8287693 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
8287499 GCTACTCGTT
* *
8287509 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
8287572 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
8287589 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
8287652 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
8287669 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8287694 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:8287693 original size:40 final size:40
Alignment explanation
Indices: 8287490--8287693 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
8287480 CGGAATTTAA
** *
8287490 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
8287530 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
8287570 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
8287609 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
8287649 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
8287689 CCGGA
1 CCGGA
8287694 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:8289567 original size:45 final size:44
Alignment explanation
Indices: 8289453--8289616 Score: 165
Period size: 45 Copynumber: 3.8 Consensus size: 44
8289443 ATGCTATCTC
* * * * *
8289453 ATATTGATGCCACTGTCCTAGACAG-GGTCTTACTCGAATC-TA-
1 ATATCGATGCCAATGTCCCAGAC-GTGGTCTTACACGAAACATAT
* * * *
8289495 ATA-CAATGCCGATGTCCCAGACATGGTCTTACACGTAACCATAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACG-AAACATAT
* *
8289539 ATATCGATGCCAATGTCCTAGACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACACG-AAACATAT
*
8289584 ATATCGATGCCAACGTCCCAGACGTGGTCTTAC
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTAC
8289617 TCAGAAATAC
Statistics
Matches: 100, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
41 24 0.24
42 6 0.06
43 2 0.02
44 3 0.03
45 65 0.65
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAACATAT
Found at i:8297576 original size:20 final size:20
Alignment explanation
Indices: 8297547--8297586 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8297537 GGTTCTAGCA
*
8297547 GAGAGGTTGGGATAGAGGCT
1 GAGAGATTGGGATAGAGGCT
8297567 GAGAGATTGGGATAGAGGCT
1 GAGAGATTGGGATAGAGGCT
8297587 CCTAAGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.47, T:0.20
Consensus pattern (20 bp):
GAGAGATTGGGATAGAGGCT
Found at i:8297935 original size:16 final size:16
Alignment explanation
Indices: 8297916--8297953 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
8297906 ACAAATCCCA
8297916 AAAAGCTGAAATGTCG
1 AAAAGCTGAAATGTCG
*
8297932 AAAAACTGAAATGTCG
1 AAAAGCTGAAATGTCG
8297948 AAAAGC
1 AAAAGC
8297954 CAAAATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.13, G:0.21, T:0.16
Consensus pattern (16 bp):
AAAAGCTGAAATGTCG
Found at i:8298217 original size:29 final size:28
Alignment explanation
Indices: 8298176--8298255 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
8298166 GACTGTAAAA
8298176 GTGATTGGGCCTAGTGGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
* *
8298204 GTGATTTGGGCCTAATGGGTCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
* *
8298233 GAGAATGGGCCTAGTGGGCCATA
1 GTGATTGGGCCTAGTGGGCCATA
8298256 AGCATGTATG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 20 0.45
29 23 0.52
30 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.35, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:8303730 original size:43 final size:43
Alignment explanation
Indices: 8303682--8303808 Score: 159
Period size: 43 Copynumber: 3.0 Consensus size: 43
8303672 ATGTGTTCCT
*
8303682 GTGTAAGACCATGTCTGGGACATTGGCATCGATGTGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* * *
8303725 GTGTAAGACCATGTCTGGGACATCGACATC-ATATTTGATT-C
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* * * * *
8303766 GTGTAACACCCTGTCCGGGATAGTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
8303809 AAGTAAGATC
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 24 0.34
42 17 0.24
43 29 0.41
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
Found at i:8304208 original size:5 final size:5
Alignment explanation
Indices: 8304198--8304224 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
8304188 AATTTGTGTG
8304198 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
8304225 TCAAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:8305477 original size:28 final size:28
Alignment explanation
Indices: 8305445--8305508 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
8305435 CAGCCAAGAN
*
8305445 AGGGGTATAAAGGTCATTTAGCATACAT
1 AGGGGTATAAAGGTAATTTAGCATACAT
* *
8305473 AGGGGTATAATGGTAATTTTGCATACAT
1 AGGGGTATAAAGGTAATTTAGCATACAT
8305501 AGGGGTAT
1 AGGGGTAT
8305509 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (28 bp):
AGGGGTATAAAGGTAATTTAGCATACAT
Found at i:8314674 original size:20 final size:20
Alignment explanation
Indices: 8314642--8314716 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
8314632 ATAAGTGGGA
8314642 TATGATAT--ACATGA-ATG
1 TATGATATGCACATGATATG
*
8314659 ATATGATATGTACATGATATG
1 -TATGATATGCACATGATATG
8314680 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
8314700 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
8314717 GTAATCATAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.15
20 41 0.79
21 3 0.06
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:8314677 original size:11 final size:11
Alignment explanation
Indices: 8314649--8314701 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
8314639 GGATATGATA
8314649 TACATGA-ATG
1 TACATGATATG
*
8314659 -ATATGATATG
1 TACATGATATG
8314669 TACATGATATG
1 TACATGATATG
8314680 T--ATGATATG
1 TACATGATATG
*
8314689 CACATGATATG
1 TACATGATATG
8314700 TA
1 TA
8314702 TGAAATGCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
9 13 0.37
10 3 0.09
11 19 0.54
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.36
Consensus pattern (11 bp):
TACATGATATG
Found at i:8314809 original size:24 final size:24
Alignment explanation
Indices: 8314782--8314956 Score: 235
Period size: 24 Copynumber: 7.2 Consensus size: 24
8314772 GTTATACCTT
*
8314782 AGTTATTAAAAGGGCTTATGCCTC
1 AGTTATTAAAAGGGCTTATGCCCC
*
8314806 AGTTATCAAAAGGGCTTATGCCCC
1 AGTTATTAAAAGGGCTTATGCCCC
* *
8314830 AGCTATCAAAAGGGCTTATGCCCC
1 AGTTATTAAAAGGGCTTATGCCCC
*
8314854 AGTTATTAAAAGGGCTTACGCCCC
1 AGTTATTAAAAGGGCTTATGCCCC
*
8314878 AGTTATCAAAAGGGCTTATGCCCC
1 AGTTATTAAAAGGGCTTATGCCCC
* *
8314902 AGTTATTAAAAGGGTTTTTGCCCC
1 AGTTATTAAAAGGGCTTATGCCCC
* *
8314926 AGTTATTAACAGAGGC-TAGGCCTCC
1 AGTTATTAAAAG-GGCTTATGCC-CC
8314951 AGTTAT
1 AGTTAT
8314957 ATGATAAAGC
Statistics
Matches: 134, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
24 124 0.93
25 10 0.07
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AGTTATTAAAAGGGCTTATGCCCC
Found at i:8322763 original size:20 final size:20
Alignment explanation
Indices: 8322738--8322784 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
8322728 GATATGATGT
*
8322738 ACATGA-ATGATATGATATGC
1 ACATGATATG-TATGAAATGC
8322758 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
8322778 ACATGAT
1 ACATGAT
8322785 GTAATCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:8322866 original size:24 final size:24
Alignment explanation
Indices: 8322833--8323011 Score: 304
Period size: 24 Copynumber: 7.5 Consensus size: 24
8322823 GGAGGAAGTG
8322833 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
8322857 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
8322881 CAAAAGGGCTTATGCCCCAGCTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
8322905 CAAAAGGGCTTATGCCCCAGCTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
8322929 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
8322953 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
8322977 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
8323001 TAAAAGGGCTT
1 CAAAAGGGCTT
8323012 TCGCCTATGA
Statistics
Matches: 147, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 147 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:8323129 original size:20 final size:21
Alignment explanation
Indices: 8323094--8323150 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
8323084 TGATAAGTGG
8323094 GATATGATAT--ACATGA-AT
1 GATATGATATGCACATGATAT
8323112 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
*
8323133 G-TATGAAATGCACATGAT
1 GATATGATATGCACATGAT
8323151 GTAATCATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 22 0.63
21 3 0.09
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:8323227 original size:24 final size:24
Alignment explanation
Indices: 8323200--8323343 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
8323190 GAGGAAGTGC
8323200 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
8323224 AAAAGAGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
* *
8323248 AAAAGGGCTTATGCCCCAGCTATC
1 AAAAGGGCTTATGCCCCAGTTATT
8323272 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
8323296 AAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
8323320 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
8323344 ATTATAAAGC
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
24 99 0.90
25 11 0.10
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:8323323 original size:366 final size:367
Alignment explanation
Indices: 8322651--8323343 Score: 1291
Period size: 366 Copynumber: 1.9 Consensus size: 367
8322641 ACCTTTATAA
*
8322651 TATGAAAATGACTGCTTTGCCCCTAGGTAAAAATGACCATTATACACCTAGGGTTTAATTATAAA
1 TATGAAAATGACTGCTTTGCCCCTAGGTAAAAATGACCATTATACACCTAAGGTTTAATTATAAA
*
8322716 TTTGATAAGTGGGATATGATGTACATGAATGATATGATATGCACATGATATGTATGAAATGCACA
66 TTTGATAAGTGGGATATGATATACATGAATGATATGATATGCACATGATATGTATGAAATGCACA
*
8322781 TGATGTAATCATAAATGCATTGGGTTGGGTTTTTATGTGGATGGAGGAAGTGCAAAAGGGCTTAT
131 TGATGTAATCATAAATGCATTGGGTTGGGTTTTTATATGGATGGAGGAAGTGCAAAAGGGCTTAT
*
8322846 GCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGCTATCAAAAG
196 GCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGCTATCAAAAG
* *
8322911 GGCTTATGCCCCAGCTATCAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCTTATGCC-CCAGT
261 GGCTTATGCCCCAGCTATCAAAAGGGCTTACGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGT
8322974 TATCAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTTCGCC
325 TATCAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTTCGCC
8323017 TATGAAAATGACTGCTTTGCCCCTAGGTAAAAATGACCATTATACACCTAAGGTTTAATTATAAA
1 TATGAAAATGACTGCTTTGCCCCTAGGTAAAAATGACCATTATACACCTAAGGTTTAATTATAAA
8323082 TTTGATAAGTGGGATATGATATACATGAATGATATGATATGCACATGATATGTATGAAATGCACA
66 TTTGATAAGTGGGATATGATATACATGAATGATATGATATGCACATGATATGTATGAAATGCACA
8323147 TGATGTAATCATAAATGCATTGGGTTGGGTTTTTATATGGATGGAGGAAGTGCAAAAGGGCTTAT
131 TGATGTAATCATAAATGCATTGGGTTGGGTTTTTATATGGATGGAGGAAGTGCAAAAGGGCTTAT
8323212 GCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGCTATCAAAAG
196 GCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGCTATCAAAAG
* *
8323277 GGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTT
261 GGCTTATGCCCCAGCTATCAAAAGGGCTTACGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTT
8323342 AT
326 AT
8323344 ATTATAAAGC
Statistics
Matches: 317, Mismatches: 8, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
366 306 0.97
367 11 0.03
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (367 bp):
TATGAAAATGACTGCTTTGCCCCTAGGTAAAAATGACCATTATACACCTAAGGTTTAATTATAAA
TTTGATAAGTGGGATATGATATACATGAATGATATGATATGCACATGATATGTATGAAATGCACA
TGATGTAATCATAAATGCATTGGGTTGGGTTTTTATATGGATGGAGGAAGTGCAAAAGGGCTTAT
GCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGCTATCAAAAG
GGCTTATGCCCCAGCTATCAAAAGGGCTTACGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTT
ATCAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTTCGCC
Found at i:8328079 original size:20 final size:20
Alignment explanation
Indices: 8328033--8328084 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
8328023 AAAAATCATT
* **
8328033 TTAAAATGATTTTGACTTGA
1 TTAAAATAATTTTGAAATGA
* *
8328053 TTGAAATAATTTTGAAATGG
1 TTAAAATAATTTTGAAATGA
*
8328073 TTAAAATCATTT
1 TTAAAATAATTT
8328085 GCACTTGATT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (20 bp):
TTAAAATAATTTTGAAATGA
Found at i:8333125 original size:15 final size:15
Alignment explanation
Indices: 8333105--8333173 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
8333095 GTATCTTGGG
8333105 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
8333120 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
8333135 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
8333150 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
8333165 TTTCTTTAT
1 TTTCTTTAT
8333174 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:8333174 original size:30 final size:30
Alignment explanation
Indices: 8333096--8333183 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
8333086 CATAGTATCG
* * * *
8333096 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
8333126 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
8333156 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
8333184 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:8334979 original size:46 final size:46
Alignment explanation
Indices: 8334910--8335081 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
8334900 NNNNNNNNNN
8334910 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
** *** * *
8334956 AACTCGTTGAGTTGAGTTTGAGTTCGAGAGATGTAACTAG-GCA--TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTCCG
*
8335003 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-G
*
8335049 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8335082 GTGGGTCACA
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 61 0.59
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:8339763 original size:31 final size:30
Alignment explanation
Indices: 8339725--8339807 Score: 91
Period size: 31 Copynumber: 2.7 Consensus size: 30
8339715 TATTAATTAT
8339725 TAAAATAAAAATAAAAATATAGAATCAAA-A
1 TAAAATAAAAATAAAAATATAG-ATCAAATA
*
8339755 CTAAAATAAATAATAAAAAT-TAGATTAAATA
1 -TAAAATAAA-AATAAAAATATAGATCAAATA
*
8339786 TAAAGATATAAAT-AAAATATAG
1 TAAA-ATAAAAATAAAAATATAG
8339808 CAAGTATTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
29 5 0.11
30 15 0.33
31 17 0.37
32 9 0.20
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.25
Consensus pattern (30 bp):
TAAAATAAAAATAAAAATATAGATCAAATA
Found at i:8339773 original size:19 final size:19
Alignment explanation
Indices: 8339728--8339774 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
8339718 TAATTATTAA
*
8339728 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
8339747 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
8339766 AATAAAAAT
1 AATAAAAAT
8339775 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:8340309 original size:70 final size:69
Alignment explanation
Indices: 8340234--8340365 Score: 158
Period size: 70 Copynumber: 1.9 Consensus size: 69
8340224 ATGAAACATC
* * * *
8340234 TCAATTTTCAGCAACTAAACACTTCAATTTGTAGTACTTAAAACA-CTTCAATTTACAACATTTA
1 TCAATTTACAGCAACTAAACACTTCAATTTGCAGCACTT-AAACATC-TCAATTAACAACATTTA
8340298 AGTACT
64 AGTACT
* ** * *
8340304 TCAATTTACAGTATTTAAACATTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTT
1 TCAATTTACAGCAACTAAACACTTCAATTTGCAGCACTTAAACATCTCAATTAACAACATTT
8340366 GTACAACTCA
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
69 19 0.37
70 33 0.63
ACGTcount: A:0.38, C:0.20, G:0.05, T:0.37
Consensus pattern (69 bp):
TCAATTTACAGCAACTAAACACTTCAATTTGCAGCACTTAAACATCTCAATTAACAACATTTAAG
TACT
Found at i:8340329 original size:23 final size:23
Alignment explanation
Indices: 8340234--8340530 Score: 203
Period size: 23 Copynumber: 12.9 Consensus size: 23
8340224 ATGAAACATC
* **
8340234 TCAATTTTCAGCAACTAAACACT
1 TCAATTTACAGCATTTAAACACT
** * *
8340257 TCAATTTGTAGTACTTAAAACACT
1 TCAATTTACAGCA-TTTAAACACT
* **
8340281 TCAATTTACAACATTTAAGTACT
1 TCAATTTACAGCATTTAAACACT
* *
8340304 TCAATTTACAGTATTTAAACATT
1 TCAATTTACAGCATTTAAACACT
*
8340327 TCAATTTGCAGCACTTT-AACA-T
1 TCAATTTACAGCA-TTTAAACACT
* * **
8340349 CTCAATTAACAACATTTGTACAAC-
1 -TCAATTTACAGCATTTAAAC-ACT
*
8340373 TCAA-TTACA--ATGATAAA-ACAT
1 TCAATTTACAGCAT-TTAAACAC-T
* **
8340394 CTCAATTTCCAGCAACTAAACACT
1 -TCAATTTACAGCATTTAAACACT
* *** *
8340418 TCAATTTGCAGTGCTTCAACACT
1 TCAATTTACAGCATTTAAACACT
* *
8340441 TCAATTTACAGTACTTAAACACT
1 TCAATTTACAGCATTTAAACACT
*
8340464 TCAATTTACAACATTTAAACACT
1 TCAATTTACAGCATTTAAACACT
*
8340487 TCAATTTACAGCATTCAAACACT
1 TCAATTTACAGCATTTAAACACT
*
8340510 TCAATTTGCAGCATTTAAACA
1 TCAATTTACAGCATTTAAACA
8340531 ACAGCAGCCA
Statistics
Matches: 213, Mismatches: 47, Indels: 28
0.74 0.16 0.10
Matches are distributed among these distances:
19 2 0.01
20 2 0.01
21 2 0.01
22 12 0.06
23 167 0.78
24 25 0.12
25 3 0.01
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.34
Consensus pattern (23 bp):
TCAATTTACAGCATTTAAACACT
Found at i:8341949 original size:7 final size:7
Alignment explanation
Indices: 8341935--8341969 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
8341925 AATTCTATTG
8341935 TGAGTTA
1 TGAGTTA
*
8341942 TAAGTTA
1 TGAGTTA
8341949 TGAGTTA
1 TGAGTTA
8341956 TGAGTTA
1 TGAGTTA
8341963 TGAGTTA
1 TGAGTTA
8341970 AGGCACAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (7 bp):
TGAGTTA
Found at i:8343884 original size:28 final size:27
Alignment explanation
Indices: 8343820--8343971 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
8343810 TTATTAAGTC
* *
8343820 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
8343847 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
8343875 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
8343902 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
8343930 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
8343957 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8343972 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:8343904 original size:55 final size:55
Alignment explanation
Indices: 8343820--8343996 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
8343810 TTATTAAGTC
* * *
8343820 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
8343875 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * * *
8343930 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
8343986 CGCACACTTAG
1 CGCACACTTAG
8343997 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:8346576 original size:8 final size:8
Alignment explanation
Indices: 8346563--8346631 Score: 124
Period size: 8 Copynumber: 8.9 Consensus size: 8
8346553 CTAAAATATT
8346563 AATTTTTA
1 AATTTTTA
8346571 AATTTTTA
1 AATTTTTA
8346579 AATTTTTA
1 AATTTTTA
8346587 AATTTTTA
1 AATTTTTA
8346595 AATTTTTA
1 AATTTTTA
8346603 AATTTTTA
1 AATTTTTA
8346611 AA-TTTTA
1 AATTTTTA
8346618 AA-TTTTA
1 AATTTTTA
8346625 AATTTTT
1 AATTTTT
8346632 TATTTTTTGA
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
7 14 0.23
8 46 0.77
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
AATTTTTA
Found at i:8346954 original size:22 final size:23
Alignment explanation
Indices: 8346926--8346978 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
8346916 TTTAGGGCTT
8346926 GGGGTTTAAGGGTTGG-GGTTTA
1 GGGGTTTAAGGGTTGGAGGTTTA
* *
8346948 GGGGTTTAGGGGTTGGAGTTTTA
1 GGGGTTTAAGGGTTGGAGGTTTA
*
8346971 AGGGTTTA
1 GGGGTTTA
8346979 TGATTTGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.38
Consensus pattern (23 bp):
GGGGTTTAAGGGTTGGAGGTTTA
Found at i:8346968 original size:14 final size:14
Alignment explanation
Indices: 8346916--8346953 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
8346906 TAAACATTGT
*
8346916 TTTAGGGCTTGGGG
1 TTTAGGGGTTGGGG
*
8346930 TTTAAGGGTTGGGG
1 TTTAGGGGTTGGGG
8346944 TTTAGGGGTT
1 TTTAGGGGTT
8346954 TAGGGGTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.11, C:0.03, G:0.47, T:0.39
Consensus pattern (14 bp):
TTTAGGGGTTGGGG
Found at i:8347057 original size:22 final size:22
Alignment explanation
Indices: 8346967--8347057 Score: 73
Period size: 22 Copynumber: 4.2 Consensus size: 22
8346957 GGGTTGGAGT
*
8346967 TTTAAGGGTTTATGATTTGAGA
1 TTTAAGAGTTTATGATTTGAGA
* * *
8346989 TTT-AGAGTTTAGGGTGTTGGGA
1 TTTAAGAGTTTATGAT-TTGAGA
*
8347011 -TTAAG-GTTTATTG-TTTAGAGT
1 TTTAAGAGTTTA-TGATTT-GAGA
*
8347032 TTTAAGAGTTTATGATTTGATA
1 TTTAAGAGTTTATGATTTGAGA
8347054 TTTA
1 TTTA
8347058 GGGTCTGGTG
Statistics
Matches: 53, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
20 2 0.04
21 19 0.36
22 24 0.45
23 8 0.15
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.48
Consensus pattern (22 bp):
TTTAAGAGTTTATGATTTGAGA
Found at i:8347110 original size:66 final size:66
Alignment explanation
Indices: 8347022--8347151 Score: 188
Period size: 66 Copynumber: 2.0 Consensus size: 66
8347012 TAAGGTTTAT
* * *
8347022 TGTTTAGAGTTTTAAGAGTTTATGATTTGATATTTAGGGTCTGGTGTTTAAAGAGTTATTGATTA
1 TGTTTAGAGTTTTAAGAGTTTATGATTAGAGATTTAGGGTCTGGGGTTTAAAGAGTTATTGATTA
8347087 G
66 G
* * * * *
8347088 TGTTTATAGTTTTAGGGGTTTATGATTAGAGATTTAGGGTCTGGGGTTTAAAGGGTTGTTGATT
1 TGTTTAGAGTTTTAAGAGTTTATGATTAGAGATTTAGGGTCTGGGGTTTAAAGAGTTATTGATT
8347152 TAAGGGGTTA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.23, C:0.02, G:0.29, T:0.46
Consensus pattern (66 bp):
TGTTTAGAGTTTTAAGAGTTTATGATTAGAGATTTAGGGTCTGGGGTTTAAAGAGTTATTGATTA
G
Found at i:8347173 original size:66 final size:65
Alignment explanation
Indices: 8347025--8347175 Score: 153
Period size: 66 Copynumber: 2.3 Consensus size: 65
8347015 GGTTTATTGT
* * * * * *
8347025 TTAGAGTTTTAAGAGTTTATGATTTGATATTTAGGGTCTGGTGTTTAAAGAGTTATTGATTAGTG
1 TTAGAG-TTTAGGGGTTTATGATTAGAGATTTAGGGTCTGGGGTTTAAAGAGTTATTGATTAGGG
*
8347090 T
65 G
* * *
8347091 TTATAGTTTTAGGGGTTTATGATTAGAGATTTAGGGTCTGGGGTTTAAAGGGTTGTTGATTTAAG
1 TTAGAG-TTTAGGGGTTTATGATTAGAGATTTAGGGTCTGGGGTTTAAAGAGTTATTGA-TT-AG
8347156 GGG
63 GGG
8347159 TTAGGAG-TTA-GGGTTTA
1 TTA-GAGTTTAGGGGTTTA
8347176 AAGAAAGCCA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
66 58 0.82
67 5 0.07
68 6 0.08
69 2 0.03
ACGTcount: A:0.24, C:0.01, G:0.31, T:0.44
Consensus pattern (65 bp):
TTAGAGTTTAGGGGTTTATGATTAGAGATTTAGGGTCTGGGGTTTAAAGAGTTATTGATTAGGGG
Found at i:8348635 original size:90 final size:90
Alignment explanation
Indices: 8348476--8348640 Score: 215
Period size: 90 Copynumber: 1.8 Consensus size: 90
8348466 CGCCATATCC
* * * * * *
8348476 CAGATATGGTCTTACTTGGGATCACAACTCGATGCCAATGCCATGTCCTAGGCATGGTCTTACAT
1 CAGATATGGTCTTACATGAGAACACAACTCGATGCCAATGCCATATCCTAGACATGGTCTTACAC
*
8348541 GGGATTTCATATCAACACCACATCT
66 GGGATCTCATATCAACACCACATCT
* * * *
8348566 CAGATATGGTCTTACATGATAACACATAC-CGATGCCGATGCCATATCCTAGATATGGTCTTATA
1 CAGATATGGTCTTACATGAGAACACA-ACTCGATGCCAATGCCATATCCTAGACATGGTCTTACA
8348630 CGGGATCTCAT
65 CGGGATCTCAT
8348641 CAACCCAAAC
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
90 61 0.97
91 2 0.03
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (90 bp):
CAGATATGGTCTTACATGAGAACACAACTCGATGCCAATGCCATATCCTAGACATGGTCTTACAC
GGGATCTCATATCAACACCACATCT
Found at i:8363547 original size:18 final size:18
Alignment explanation
Indices: 8363526--8363564 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
8363516 AAGAATTTAT
*
8363526 ACTTAGAAATAAATTTTG
1 ACTTAAAAATAAATTTTG
8363544 ACTTAAAAATAAATTTTG
1 ACTTAAAAATAAATTTTG
8363562 ACT
1 ACT
8363565 ATTTTCAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (18 bp):
ACTTAAAAATAAATTTTG
Found at i:8365019 original size:13 final size:13
Alignment explanation
Indices: 8364997--8365029 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8364987 AAGGGTTTGT
8364997 TTAT-TAAACTAA
1 TTATCTAAACTAA
8365009 TTATCTAAACTAA
1 TTATCTAAACTAA
*
8365022 TTAACTAA
1 TTATCTAA
8365030 TTCAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:8367963 original size:5 final size:5
Alignment explanation
Indices: 8367940--8368006 Score: 55
Period size: 5 Copynumber: 12.4 Consensus size: 5
8367930 CTTTCAAAAT
* *
8367940 AATAA AATTGA AATGAA AATAAA AAGAAA AATAA AA-ATA AATAA AATAA
1 AATAA AA-TAA AAT-AA AAT-AA AATA-A AATAA AATA-A AATAA AATAA
8367989 AATAA AATAA GAATAA AA
1 AATAA AATAA -AATAA AA
8368007 AGATAGGAGG
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
4 1 0.02
5 28 0.55
6 22 0.43
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:8369618 original size:27 final size:27
Alignment explanation
Indices: 8369588--8369765 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
8369578 ATATTGAGCC
* *
8369588 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
8369615 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
8369642 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
8369670 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
8369697 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
8369724 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
8369751 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8369766 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:8369727 original size:82 final size:81
Alignment explanation
Indices: 8369609--8369764 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
8369599 TGCTATATAA
* * *
8369609 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
8369674 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
8369691 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
8369755 CACTTAGTGC
65 CACTTAGTGC
8369765 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8378191 original size:27 final size:27
Alignment explanation
Indices: 8378161--8378337 Score: 128
Period size: 27 Copynumber: 6.6 Consensus size: 27
8378151 ATATTGAGTC
*
8378161 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
** *
8378188 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTATATAATCAACT
*
8378215 CGCACACTTAGTGCT-TCATAGTCAAACT
1 CGCACACTTAGTGCTAT-ATAATC-AACT
** ** *
8378243 CGCACACTTAGTGAC-GCATGGTCAATT
1 CGCACACTTAGTG-CTATATAATCAACT
* **
8378270 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTAT-ATAATCAACT
* * * *
8378297 CGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTATATAATCAACT
*
8378323 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
8378338 GTACAATTTA
Statistics
Matches: 122, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
26 16 0.13
27 83 0.68
28 22 0.18
29 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:8378252 original size:55 final size:53
Alignment explanation
Indices: 8378161--8378337 Score: 180
Period size: 55 Copynumber: 3.3 Consensus size: 53
8378151 ATATTGAGTC
* *
8378161 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCT-TCATAATCAACTCGCACACTTAGTGC-ACGTAGTCAAAT
* * *
8378215 CGCACACTTAGTGCTTCATAGTCAAACTCGCACACTTAGTG-ACGCATGGTCAATT
1 CGCACACTTAGTGCTTCATAATC-AACTCGCACACTTAGTGCACG--TAGTCAAAT
* * ** *
8378270 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGT-AAAT
1 CGCACACTTAGTGCTTCATAATCAACTCGCACACTTAGTGC-ACGTAGTCAAAT
*
8378323 CGCACACATAGTGCT
1 CGCACACTTAGTGCT
8378338 GTACAATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
53 20 0.19
54 37 0.36
55 44 0.43
56 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTTCATAATCAACTCGCACACTTAGTGCACGTAGTCAAAT
Found at i:8378302 original size:82 final size:80
Alignment explanation
Indices: 8378182--8378335 Score: 202
Period size: 82 Copynumber: 1.9 Consensus size: 80
8378172 TGCTATATAA
* **
8378182 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTTCATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGT-AAA-TCGCA
*
8378247 CACTTAGTGACGCATGG
64 CACATAGTGACGCATGG
* * **
8378264 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTAAATCGCAC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCAC
8378328 ACATAGTG
65 ACATAGTG
8378336 CTGTACAATT
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 13 0.21
81 4 0.06
82 46 0.73
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (80 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTAAATCGCACA
CATAGTGACGCATGG
Found at i:8380454 original size:54 final size:54
Alignment explanation
Indices: 8380371--8380502 Score: 174
Period size: 54 Copynumber: 2.4 Consensus size: 54
8380361 CTACGGCGGG
* * *
8380371 ATTACCAGTCCAAGCTAAATCCCTTGTAATATAAACTCATAGAATGTCGTCGAA
1 ATTACCAGTCCAGGTTAAATCCCTCGTAATATAAACTCATAGAATGTCGTCGAA
** * * * **
8380425 ATTACCAGTTTAGTTTAAATCCCTCGTAATATGAACTCGTAGAATGTCGTCGGG
1 ATTACCAGTCCAGGTTAAATCCCTCGTAATATAAACTCATAGAATGTCGTCGAA
8380479 ATTACCAGTCCAGGTTAAATCCCT
1 ATTACCAGTCCAGGTTAAATCCCT
8380503 TACAACGACA
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (54 bp):
ATTACCAGTCCAGGTTAAATCCCTCGTAATATAAACTCATAGAATGTCGTCGAA
Found at i:8381387 original size:26 final size:26
Alignment explanation
Indices: 8381358--8381413 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
8381348 TGATAAAAAT
8381358 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8381384 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8381410 TGAT
1 TGAT
8381414 GGGCATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8385261 original size:39 final size:40
Alignment explanation
Indices: 8385089--8385330 Score: 294
Period size: 40 Copynumber: 6.1 Consensus size: 40
8385079 CGGAATTTAA
* *
8385089 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
8385129 CCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
8385169 TCGGATTTAGTAATTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
8385209 CCGGATTTAGTAACTCACACAAATGCCTTCAGGACTT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
8385248 CCGGATATAGTAACTTGCACAAATGCCTTCGGGACTT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
8385287 CCGGA-ACTAGTCACTAGCGCAATTGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
8385327 CCGG
1 CCGG
8385331 TTATCATCCA
Statistics
Matches: 176, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 69 0.39
40 106 0.60
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:8393696 original size:26 final size:26
Alignment explanation
Indices: 8393667--8393719 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
8393657 TTTACAGTTT
8393667 TACCACTAGGAGATAAATT-ACTGAAA
1 TACCACTAGG-GATAAATTGACTGAAA
* * *
8393693 TACCTCTAGGGTTAAATTGACTTAAA
1 TACCACTAGGGATAAATTGACTGAAA
8393719 T
1 T
8393720 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (26 bp):
TACCACTAGGGATAAATTGACTGAAA
Found at i:8398232 original size:93 final size:93
Alignment explanation
Indices: 8398100--8398270 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
8398090 CCCATAAGTG
* * *
8398100 AACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
8398165 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
* * *
8398193 AACTCGAACTCAACTCAACGAGTTCGGACATTCGTATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
8398258 GAGTTCGGATGCC
66 GAGCTCGGATGCC
8398271 CAAATATCCT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGAACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:8398266 original size:46 final size:46
Alignment explanation
Indices: 8398091--8398266 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
8398081 TGTAACCCGC
* * * *
8398091 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
* *
8398137 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTA--T
* *** * * *
8398183 ACATCTCTCAAACTCGAACTCAACTCAACGAGTTCGGACATTCGTAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
*
8398230 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
8398267 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
44 3 0.03
46 67 0.64
47 30 0.29
49 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGTAT
Found at i:8398412 original size:35 final size:35
Alignment explanation
Indices: 8398365--8398434 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
8398355 TCTTCTATGG
*
8398365 AATGCCGTTACCGATACTCGGTAGTATTTCACATT
1 AATGCCGATACCGATACTCGGTAGTATTTCACATT
8398400 AATGCCGATACCGATACTCGGTAGTATTTCACATT
1 AATGCCGATACCGATACTCGGTAGTATTTCACATT
8398435 TTCCAAGTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (35 bp):
AATGCCGATACCGATACTCGGTAGTATTTCACATT
Found at i:8399739 original size:42 final size:43
Alignment explanation
Indices: 8399693--8399784 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 43
8399683 CCTACATGAT
* *
8399693 TCTCATATTGATACCATGTCCCAAACATGGTCTTACACG-AAA
1 TCTCATAATGATACCATATCCCAAACATGGTCTTACACGTAAA
* *** *
8399735 TCTCATAATGATGCCATATCCTGGATATGGTCTTACACGTAAA
1 TCTCATAATGATACCATATCCCAAACATGGTCTTACACGTAAA
8399778 -CTCATAA
1 TCTCATAA
8399785 CCCTAATGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
42 39 0.93
43 3 0.07
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (43 bp):
TCTCATAATGATACCATATCCCAAACATGGTCTTACACGTAAA
Found at i:8416603 original size:22 final size:23
Alignment explanation
Indices: 8416556--8416605 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 23
8416546 TGGTTCAATC
8416556 AAATAAATTAATAAAAGTTTATAA
1 AAATAAA-TAATAAAAGTTTATAA
8416580 AAATAAA-AATAAATA-TTT-TAA
1 AAATAAATAATAAA-AGTTTATAA
8416601 AAATA
1 AAATA
8416606 GAAAAAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 8 0.32
22 9 0.36
23 1 0.04
24 7 0.28
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
AAATAAATAATAAAAGTTTATAA
Found at i:8419037 original size:19 final size:19
Alignment explanation
Indices: 8418993--8419030 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8418983 CAAGTTATTA
* *
8418993 TCATATCATCTCAAGATTT
1 TCATGTCATATCAAGATTT
8419012 TCATGTCATATCAAGATTT
1 TCATGTCATATCAAGATTT
8419031 ATATGTCCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (19 bp):
TCATGTCATATCAAGATTT
Found at i:8423917 original size:42 final size:43
Alignment explanation
Indices: 8423858--8423972 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
8423848 TAGGGTTATT
8423858 TGAGATTAT-GTGTAAGACCATATCTAGGATATGA-CATTGATA
1 TGAGATT-TCGTGTAAGACCATATCTAGGATATGAGCATTGATA
* * * *
8423900 TGAGATTTCGTGTAAGACCATAGCTGGGCTATTAGCATTGATA
1 TGAGATTTCGTGTAAGACCATATCTAGGATATGAGCATTGATA
** *
8423943 TGAGATCCCATGTAAGACCATATCTAGGAT
1 TGAGATTTCGTGTAAGACCATATCTAGGAT
8423973 GACCATAGCT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 1 0.02
42 28 0.46
43 32 0.52
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (43 bp):
TGAGATTTCGTGTAAGACCATATCTAGGATATGAGCATTGATA
Found at i:8423983 original size:58 final size:58
Alignment explanation
Indices: 8423915--8424030 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
8423905 TTTCGTGTAA
8423915 GACCATAGCTGGGCTATTAGCATTGATATGAGATCCCATGTAAGACCATATCTAGGAT
1 GACCATAGCTGGGCTATTAGCATTGATATGAGATCCCATGTAAGACCATATCTAGGAT
* *
8423973 GACCATAGCTGGGCTATTGGCATTGATATGAGATCCCATGTAAGACCATATCTGGGAT
1 GACCATAGCTGGGCTATTAGCATTGATATGAGATCCCATGTAAGACCATATCTAGGAT
8424031 ATGGCATTGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (58 bp):
GACCATAGCTGGGCTATTAGCATTGATATGAGATCCCATGTAAGACCATATCTAGGAT
Found at i:8424879 original size:28 final size:27
Alignment explanation
Indices: 8424818--8424879 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
8424808 TGGTTGTGTA
8424818 GGTTAGTGCAAGTAAGGGTGGAAAAAT
1 GGTTAGTGCAAGTAAGGGTGGAAAAAT
8424845 GGTTAGTGCAAGTAAGGGTGGAAAAAT
1 GGTTAGTGCAAGTAAGGGTGGAAAAAT
8424872 GGCTTAGT
1 GG-TTAGT
8424880 AAATAGACTT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 29 0.85
28 5 0.15
ACGTcount: A:0.34, C:0.05, G:0.37, T:0.24
Consensus pattern (27 bp):
GGTTAGTGCAAGTAAGGGTGGAAAAAT
Found at i:8426498 original size:46 final size:46
Alignment explanation
Indices: 8426448--8426623 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
8426438 TATTTGGGCA
8426448 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
*** * * * *
8426494 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGAAT-G
* * * *
8426541 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
* * *
8426587 CCCGAGCTCGTTGAGTTGAGTCCGAATTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
8426624 GTGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
Found at i:8440650 original size:42 final size:43
Alignment explanation
Indices: 8440591--8440693 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 43
8440581 TATTTACGTA
** ** * *
8440591 TAAGACCATGTTTGGGACATCGACATCG-TATCTG-ATTTCGTG
1 TAAGACCATGTCCGGGACAAAGACATCGATAT-TGAATTACATG
* *
8440633 TAAGACCCTGTCCGGGACAAAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCCGGGACAAAGACATCGATATTGAATTACATG
8440676 TAAGACCATGTCCGGGAC
1 TAAGACCATGTCCGGGAC
8440694 GTCGGTATTG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 24 0.48
43 26 0.52
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (43 bp):
TAAGACCATGTCCGGGACAAAGACATCGATATTGAATTACATG
Found at i:8444762 original size:42 final size:42
Alignment explanation
Indices: 8444703--8444789 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
8444693 GGGGCAAAAG
8444703 TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
1 TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
8444745 TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
1 TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
8444787 TGT
1 TGT
8444790 GAATAATAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.44
Consensus pattern (42 bp):
TGTAATTTTTCCATAGTATGATTATTGGACTGAGTTGAATAA
Found at i:8446411 original size:43 final size:42
Alignment explanation
Indices: 8446364--8446518 Score: 120
Period size: 43 Copynumber: 3.7 Consensus size: 42
8446354 TGTGTTCTCA
*
8446364 TGTAAGACCATCTCTGGGAAATTGGCATCGATATGTGATTACG
1 TGTAAGACCATCTCTGGGAAATTGGCATCGATATATGATT-CG
* * * *
8446407 TGTAAGACCATGTCT-AGAACATTGGCATTG-TATTTGATTCG
1 TGTAAGACCATCTCTGGGAA-ATTGGCATCGATATATGATTCG
* * * * *
8446448 T-TAAAGACCCTGTCTGGGACAGTGGCATCGATATATGATTGCA
1 TGT-AAGACCATCTCTGGGAAATTGGCATCGATATATGATT-CG
* **
8446491 TATAAGACCA-CGTCTGGGACGTTGGCAT
1 TGTAAGACCATC-TCTGGGAAATTGGCAT
8446519 TGTACAATAT
Statistics
Matches: 90, Mismatches: 15, Indels: 14
0.76 0.13 0.12
Matches are distributed among these distances:
40 1 0.01
41 22 0.24
42 21 0.23
43 45 0.50
44 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATCTCTGGGAAATTGGCATCGATATATGATTCG
Found at i:8446516 original size:84 final size:84
Alignment explanation
Indices: 8446367--8446522 Score: 204
Period size: 84 Copynumber: 1.9 Consensus size: 84
8446357 GTTCTCATGT
* * * * *
8446367 AAGACCATCTCTGGGAAATTGGCATCGATATGTGATTACGTGTAAGACCATGTCTAGAACATTGG
1 AAGACCATCTCTGGGAAAGTGGCATCGATATATGATTACATATAAGACCACGTCTAGAACATTGG
8446432 CATTGTATTTGATTCGTTA
66 CATTGTATTTGATTCGTTA
* * * * * * *
8446451 AAGACCCTGTCTGGGACAGTGGCATCGATATATGATTGCATATAAGACCACGTCTGGGACGTTGG
1 AAGACCATCTCTGGGAAAGTGGCATCGATATATGATTACATATAAGACCACGTCTAGAACATTGG
8446516 CATTGTA
66 CATTGTA
8446523 CAATATGCGT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 60 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (84 bp):
AAGACCATCTCTGGGAAAGTGGCATCGATATATGATTACATATAAGACCACGTCTAGAACATTGG
CATTGTATTTGATTCGTTA
Found at i:8452547 original size:34 final size:33
Alignment explanation
Indices: 8452499--8452569 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
8452489 TTTCAAGAGT
*
8452499 AGTAACAGTCTGGGCCTGAGTCCATTACAGTATC
1 AGTAACAGTCTGGGCCTGAGCCCATTACAGTA-C
* * *
8452533 AGTAGCAGTCTGGGCCTTAGCCCATTTCAGTAC
1 AGTAACAGTCTGGGCCTGAGCCCATTACAGTAC
8452566 AGTA
1 AGTA
8452570 CGAAAACACA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 5 0.15
34 28 0.85
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (33 bp):
AGTAACAGTCTGGGCCTGAGCCCATTACAGTAC
Found at i:8453317 original size:24 final size:24
Alignment explanation
Indices: 8453272--8453317 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
8453262 CCACTTCCTA
*
8453272 GCTTTTCAGCCTTTAGGCTTTTCG
1 GCTTTTCAGCCTTTAAGCTTTTCG
8453296 GCTTTTCAGCCTTTGAAG-TTTT
1 GCTTTTCAGCCTTT-AAGCTTTT
8453318 ACACCTAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.11, C:0.22, G:0.20, T:0.48
Consensus pattern (24 bp):
GCTTTTCAGCCTTTAAGCTTTTCG
Found at i:8454158 original size:28 final size:27
Alignment explanation
Indices: 8454126--8454181 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 27
8454116 ATAATATTCA
8454126 AGAGGAGATAAGTGAGGGAAAGAGAAG
1 AGAGGAGATAAGTGAGGGAAAGAGAAG
*
8454153 ANGAGGAGATAAGTGTGGGAAAGAGAAG
1 A-GAGGAGATAAGTGAGGGAAAGAGAAG
8454181 A
1 A
8454182 AGTTGATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 1 0.04
28 26 0.96
ACGTcount: A:0.46, C:0.00, G:0.43, T:0.09
Consensus pattern (27 bp):
AGAGGAGATAAGTGAGGGAAAGAGAAG
Found at i:8457851 original size:15 final size:15
Alignment explanation
Indices: 8457819--8457847 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8457809 ATTTTCTGTG
8457819 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
8457834 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
8457848 ATTTTCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:8465628 original size:21 final size:22
Alignment explanation
Indices: 8465585--8465639 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
8465575 TGTAGGGGTC
8465585 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGGTCCAAGGG
* **
8465607 ACATGCCCGTGT-GTCCCTGGG
1 ACACGCCCGTGTGGTCCAAGGG
8465628 ACACGCCCGTGT
1 ACACGCCCGTGT
8465640 TGGAGGCCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.15, C:0.35, G:0.33, T:0.18
Consensus pattern (22 bp):
ACACGCCCGTGTGGTCCAAGGG
Found at i:8482034 original size:47 final size:47
Alignment explanation
Indices: 8481956--8482364 Score: 656
Period size: 47 Copynumber: 8.6 Consensus size: 47
8481946 CCCTTCGGGA
* * * * * *
8481956 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8482003 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8482050 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8482097 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8482144 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8482193 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8482240 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8482289 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8482336 CTTATCACATATATACACTTTCACATTCA
1 CTTATCACATATATACACTTTCACATTCA
8482365 CAATTATCCA
Statistics
Matches: 338, Mismatches: 20, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
47 248 0.73
49 90 0.27
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8482186 original size:96 final size:96
Alignment explanation
Indices: 8481956--8482364 Score: 679
Period size: 96 Copynumber: 4.3 Consensus size: 96
8481946 CCCTTCGGGA
* * * *
8481956 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCC-CTGTCACATATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTC-ATCACATATATA
8482018 CACTTTCACATTCATCACATCGGCCATTAGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
8482050 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTCATCACATATATAC
8482113 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
8482144 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTCATCACATATATAC
8482209 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
8482240 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTCATCACATATATAC
8482305 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
8482336 CTTATCAC--ATATATACACTTTCACATTCA
1 CTTATCACATATATATACACTTTCACATTCA
8482365 CAATTATCCA
Statistics
Matches: 299, Mismatches: 11, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
93 1 0.00
94 110 0.37
95 1 0.00
96 187 0.63
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTCATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8482215 original size:143 final size:141
Alignment explanation
Indices: 8481959--8482364 Score: 668
Period size: 143 Copynumber: 2.9 Consensus size: 141
8481949 TTCGGGACTT
* * * * * *
8481959 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTT
1 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTT
*
8482024 CACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGGC
66 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
8482089 CATTAGGCCTC
131 CATTAGGCCTC
* *
8482100 ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT
1 ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACT
* *
8482165 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCG
64 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
8482230 GCCATTAGGCCTT
129 GCCATTAGGCCTC
8482243 ATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
1 ATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT
8482308 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
64 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
8482365 CAATTATCCA
Statistics
Matches: 245, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
141 44 0.18
143 156 0.64
145 45 0.18
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
ATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
CATTAGGCCTC
Found at i:8490567 original size:39 final size:39
Alignment explanation
Indices: 8490442--8490651 Score: 289
Period size: 39 Copynumber: 5.3 Consensus size: 39
8490432 GCTCCTCGTT
* * * *
8490442 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAAT-TCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
8490482 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
8490522 CAAATGCCTTCGGGCTTAGCTCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
8490561 CGAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
8490600 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
8490639 CAAATGCCTTCGG
1 CAAATGCCTTCGG
8490652 ATCTTAGTTC
Statistics
Matches: 156, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 110 0.71
40 44 0.28
41 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:8490687 original size:78 final size:78
Alignment explanation
Indices: 8490442--8490703 Score: 275
Period size: 78 Copynumber: 3.3 Consensus size: 78
8490432 GCTCCTCGTT
* * * * *
8490442 CAAATGCCTTTGGGACATAGCCCGG-TTATAGTAAT-TCGGACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
* * *
8490505 GGATTTAGTAACTCGCA
62 GGAATTAGTATCTAGCA
* *
8490522 CAAATGCCTTCGGGCTTAGCTCGGAATTAGTATCTCGCACGAATGCCTTCGGGCTTAGCCCGGAA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
*
8490587 TTAGTATCTCGCA
66 TTAGTATCTAGCA
* **
8490600 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTTCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGGA
8490665 TATT-GTCA-CTTAGCA
65 -ATTAGT-ATC-TAGCA
8490680 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
8490704 CATCATTCAA
Statistics
Matches: 160, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
78 83 0.52
79 54 0.34
80 23 0.14
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
TTAGTATCTAGCA
Found at i:8490697 original size:118 final size:120
Alignment explanation
Indices: 8490444--8490703 Score: 322
Period size: 118 Copynumber: 2.2 Consensus size: 120
8490434 TCCTCGTTCA
* * * *
8490444 AATGCCTTTGGGACATAGCCCGG-TTATAGTAATTCGGACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
8490508 TTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCTCGGAATTAGTATCTCGCACG
66 ATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCTCGGAATTAGTATCTAGCACG
*
8490563 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
8490624 AATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTTCGGATATT-GTCA-CTTAGCAC-
65 AATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCTCGGA-ATTAGT-ATC-TAGCACG
8490681 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
8490704 CATCATTCAA
Statistics
Matches: 124, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
117 46 0.37
118 57 0.46
119 21 0.17
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (120 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCTCGGAATTAGTATCTAGCACG
Found at i:8498516 original size:40 final size:40
Alignment explanation
Indices: 8498472--8498735 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
8498462 GCTCCTCGTT
* *
8498472 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
8498512 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
8498552 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
8498592 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
8498632 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
8498671 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
8498712 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8498736 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:8510622 original size:13 final size:13
Alignment explanation
Indices: 8510604--8510628 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8510594 TACCTTATTT
8510604 TCGCACGGTCGTA
1 TCGCACGGTCGTA
8510617 TCGCACGGTCGT
1 TCGCACGGTCGT
8510629 GTTTCCCCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.32, T:0.24
Consensus pattern (13 bp):
TCGCACGGTCGTA
Done.