Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 241 of 313
Found at i:74571975 original size:15 final size:16
Alignment explanation
Indices: 74571947--74571976 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
74571937 TAAATTCATA
74571947 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
74571963 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
74571977 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:74572260 original size:15 final size:16
Alignment explanation
Indices: 74572235--74572266 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
74572225 TTGATTTGCT
74572235 ATTATGCCTCTATTCC
1 ATTATGCCTCTATTCC
74572251 ATTA-GCCTCTATTCC
1 ATTATGCCTCTATTCC
74572266 A
1 A
74572267 ATACAGCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.22, C:0.31, G:0.06, T:0.41
Consensus pattern (16 bp):
ATTATGCCTCTATTCC
Found at i:74575964 original size:17 final size:16
Alignment explanation
Indices: 74575942--74575975 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74575932 GAGGATGGCG
74575942 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
74575959 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
74575975 T
1 T
74575976 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:74583375 original size:29 final size:28
Alignment explanation
Indices: 74583314--74583525 Score: 167
Period size: 29 Copynumber: 7.2 Consensus size: 28
74583304 GCGTGTTAAA
* * *
74583314 CGATGGTCGAAATCATCCCTTTTCTTTAAT
1 CGATGGTC-AAACCATCCCTTTTC-ATATT
* *
74583344 CGATGGTCATCACCATCCTTTTTCATATT
1 CGATGGTCA-AACCATCCCTTTTCATATT
**
74583373 CGATGGTCGAAACCATCCCTTTTCATTAAA
1 CGATGGTC-AAACCATCCCTTTTCA-TATT
74583403 CGATGACCGTC--ACCATCCCTTTTCATATT
1 CGATG---GTCAAACCATCCCTTTTCATATT
* * * *
74583432 CGATAGTTGAAACTATCTCTTTTCATATT
1 CGAT-GGTCAAACCATCCCTTTTCATATT
** *
74583461 CGATGGTCGTCACCATCCCTTTTCATAGT
1 CGATGGTC-AAACCATCCCTTTTCATATT
* *
74583490 CGATAGTCGAAACTATCCCTTTTCATATT
1 CGATGGTC-AAACCATCCCTTTTCATATT
74583519 CGATGGT
1 CGATGGT
74583526 TGTCGATTCG
Statistics
Matches: 144, Mismatches: 28, Indels: 21
0.75 0.15 0.11
Matches are distributed among these distances:
27 1 0.01
28 2 0.01
29 96 0.67
30 42 0.29
33 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (28 bp):
CGATGGTCAAACCATCCCTTTTCATATT
Found at i:74583493 original size:58 final size:58
Alignment explanation
Indices: 74583314--74583525 Score: 264
Period size: 59 Copynumber: 3.6 Consensus size: 58
74583304 GCGTGTTAAA
* * * * *
74583314 CGATGGTCGAAA-TCATCCCTTTTCTTTAATCGATGGTCATCACCATCCTTTTTCATATT
1 CGATAGTCGAAACT-ATCCCTTTTC-ATATTCGATGGTCGTCACCATCCCTTTTCATATT
* * ** **
74583373 CGATGGTCGAAACCATCCCTTTTCATTAAACGATGACCGTCACCATCCCTTTTCATATT
1 CGATAGTCGAAACTATCCCTTTTCA-TATTCGATGGTCGTCACCATCCCTTTTCATATT
* * *
74583432 CGATAGTTGAAACTATCTCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGT
1 CGATAGTCGAAACTATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATT
74583490 CGATAGTCGAAACTATCCCTTTTCATATTCGATGGT
1 CGATAGTCGAAACTATCCCTTTTCATATTCGATGGT
74583526 TGTCGATTCG
Statistics
Matches: 133, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
58 62 0.47
59 71 0.53
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (58 bp):
CGATAGTCGAAACTATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATT
Found at i:74591328 original size:32 final size:32
Alignment explanation
Indices: 74591292--74591356 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
74591282 CATCAACAAC
74591292 ACATGTTACTTCATTTAAACATGATTCATATG
1 ACATGTTACTTCATTTAAACATGATTCATATG
* *
74591324 ACATGTTAGTTCATTTAAACATGATTTATATG
1 ACATGTTACTTCATTTAAACATGATTCATATG
74591356 A
1 A
74591357 ATTTGACATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (32 bp):
ACATGTTACTTCATTTAAACATGATTCATATG
Found at i:74591803 original size:29 final size:29
Alignment explanation
Indices: 74591731--74592019 Score: 224
Period size: 29 Copynumber: 9.9 Consensus size: 29
74591721 TGTGCTAAAC
** * *
74591731 GATGGTCGAAATAATCCCTTTTCTTTAATT
1 GATGGTCGAAACCATCCCTTTTC-ATAGTT
* ** * *
74591761 GATGGTTGTCACCATCCCATTTCATATTT
1 GATGGTCGAAACCATCCCTTTTCATAGTT
*
74591790 GATGGTCGAAACCATCCCTTTTCATTAATT
1 GATGGTCGAAACCATCCCTTTTCA-TAGTT
** ** ** * *
74591820 GATGACCGTCACCATCTATTTTCTTATTT
1 GATGGTCGAAACCATCCCTTTTCATAGTT
* *
74591849 GATGGTCGAAACCATCCCTTTTCATTAATC
1 GATGGTCGAAACCATCCCTTTTCA-TAGTT
* **
74591879 GATGGTTGTCACCATCCCTTTTCATAGTT
1 GATGGTCGAAACCATCCCTTTTCATAGTT
* * **
74591908 CATGGTTGTCACCAT-CCTTTTCATAGTT
1 GATGGTCGAAACCATCCCTTTTCATAGTT
* * *
74591936 GATAGTCGAAACTATCCCTTTTCATATTT
1 GATGGTCGAAACCATCCCTTTTCATAGTT
*
74591965 GATGGTC-ATCACCATCCCTTTTCATAGTT
1 GATGGTCGA-AACCATCCCTTTTCATAGTT
*
74591994 GATGGTCGAAACTA-CCCTTTTTCATA
1 GATGGTCGAAACCATCCC-TTTTCATA
74592020 TTCAATGGTC
Statistics
Matches: 204, Mismatches: 49, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
28 26 0.13
29 115 0.56
30 63 0.31
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.40
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCATAGTT
Found at i:74591823 original size:59 final size:59
Alignment explanation
Indices: 74591731--74592001 Score: 273
Period size: 59 Copynumber: 4.6 Consensus size: 59
74591721 TGTGCTAAAC
** * *
74591731 GATGGTCGAAATAATCCCTTTTCTTTAATTGATGGTTGTCACCATCCCATTTCATATTT
1 GATGGTCGAAACCATCCCTTTTCATTAATTGATGGTCGTCACCATCCCATTTCATATTT
** * *
74591790 GATGGTCGAAACCATCCCTTTTCATTAATTGATGACCGTCACCAT-CTATTTTCTTATTT
1 GATGGTCGAAACCATCCCTTTTCATTAATTGATGGTCGTCACCATCCCA-TTTCATATTT
* * * *
74591849 GATGGTCGAAACCATCCCTTTTCATTAATCGATGGTTGTCACCATCCCTTTTCATAGTT
1 GATGGTCGAAACCATCCCTTTTCATTAATTGATGGTCGTCACCATCCCATTTCATATTT
* * ** * * ** * *
74591908 CATGGTTGTCACCAT-CCTTTTCA-TAGTTGATAGTCGAAACTATCCCTTTTCATATTT
1 GATGGTCGAAACCATCCCTTTTCATTAATTGATGGTCGTCACCATCCCATTTCATATTT
* *
74591965 GATGGTC-ATCACCATCCCTTTTCA-TAGTTGATGGTCG
1 GATGGTCGA-AACCATCCCTTTTCATTAATTGATGGTCG
74592002 AAACTACCCT
Statistics
Matches: 176, Mismatches: 32, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
57 37 0.21
58 30 0.17
59 108 0.61
60 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (59 bp):
GATGGTCGAAACCATCCCTTTTCATTAATTGATGGTCGTCACCATCCCATTTCATATTT
Found at i:74596059 original size:85 final size:86
Alignment explanation
Indices: 74595944--74596137 Score: 241
Period size: 85 Copynumber: 2.3 Consensus size: 86
74595934 CGTTTATGTG
74595944 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCAC-TTTACCGAAAAACACCGCTAAAGAACAT
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTACC-AAAAACACCGCTAAAGAACAT
74596008 GACCTTTAGCGGTGCTTTACCC
65 GACCTTTAGCGGTGCTTTACCC
* * * * * * *
74596030 AAAAACGCTGCTAAA-AACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCATG
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTACCAAAAACACCGCTAAAGAACATG
* *
74596094 ACCTTTAGCGGTGTTTTTA-TC
66 ACCTTTAGCGGTG-CTTTACCC
* * *
74596115 ACAAACGCCGATATAGAACATGA
1 AAAAACGCCGCTAAAGAACATGA
74596138 TCTATAGTGG
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
85 62 0.67
86 30 0.33
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTTACCAAAAACACCGCTAAAGAACATG
ACCTTTAGCGGTGCTTTACCC
Found at i:74596112 original size:43 final size:43
Alignment explanation
Indices: 74595946--74596201 Score: 227
Period size: 43 Copynumber: 6.0 Consensus size: 43
74595936 TTTATGTGAA
** * *
74595946 AAACGCCGCTAAAGAACATGACCTTTAGCGGC-ACTTTACCGAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTATC-AC
* * * * *
74595989 AAACACCGCTAAAGAACATGACCTTTAGCGGTG-CTTTACCCAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTA-TCAC
* * *
74596032 AAACGCTGCTAAA-AACATGATCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTATCAC
* *
74596074 AAACGCCGCTAAAGATCATGACCTTTAGCGGTGTTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTATCAC
* * * * *
74596117 AAACGCCGATATAGAACATGATCTATAGTGGCGTTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTATCAC
* * * *
74596160 AAATGCCGGTAAAAGTACCAT--TCTTTAGCGGCGTTTTT-TCAC
1 AAACGCCGCT-AAAG-AACATGACCTTTAGCGGCGTTTTTATCAC
74596202 TAACTTTGGC
Statistics
Matches: 180, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
42 35 0.19
43 136 0.76
44 5 0.03
45 4 0.02
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTATCAC
Found at i:74596186 original size:86 final size:84
Alignment explanation
Indices: 74595946--74596201 Score: 203
Period size: 85 Copynumber: 3.0 Consensus size: 84
74595936 TTTATGTGAA
* * * * * * * * *
74595946 AAACGCCGCTAAAGAACATGACCTTTAGCGGCAC-TTTACCGAAAAACACCGCTAAAGAACATGA
1 AAACGCCGATATAGAACATGATCTATAGCGGCGCTTTTATC-ACAAACGCCGCTAAAGACCAT-A
* *** *
74596010 CCTTTAGCGGTGCTTTACCCAA
64 CCTTTAGCGGCG-TTTTTTCAC
* * * * *
74596032 AAACGCTGCTA-AAAACATGATCTTTAGCGGCGCTTTTATCACAAACGCCGCTAAAGATCATGAC
1 AAACGCCGATATAGAACATGATCTATAGCGGCGCTTTTATCACAAACGCCGCTAAAGACCAT-AC
*
74596096 CTTTAGCGGTGTTTTTATCAC
65 CTTTAGCGGCGTTTTT-TCAC
* * * *
74596117 AAACGCCGATATAGAACATGATCTATAGTGGCGTTTTTATCACAAATGCCGGTAAAAGTACCAT-
1 AAACGCCGATATAGAACATGATCTATAGCGGCGCTTTTATCACAAACGCCGCT-AAAG-ACCATA
*
74596181 TCTTTAGCGGCGTTTTTTCAC
64 CCTTTAGCGGCGTTTTTTCAC
74596202 TAACTTTGGC
Statistics
Matches: 142, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
84 3 0.02
85 66 0.46
86 65 0.46
87 4 0.03
88 4 0.03
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (84 bp):
AAACGCCGATATAGAACATGATCTATAGCGGCGCTTTTATCACAAACGCCGCTAAAGACCATACC
TTTAGCGGCGTTTTTTCAC
Found at i:74600896 original size:7 final size:7
Alignment explanation
Indices: 74600884--74601016 Score: 56
Period size: 7 Copynumber: 18.7 Consensus size: 7
74600874 ACTAATTAAT
74600884 CTAAACC
1 CTAAACC
74600891 CTAAACCC
1 CTAAA-CC
**
74600899 CTATCCC
1 CTAAACC
**
74600906 CTATCCC
1 CTAAACC
*
74600913 CTAAACT
1 CTAAACC
74600920 CTAAACC
1 CTAAACC
**
74600927 CTAAAAT
1 CTAAACC
* **
74600934 ATAAATA
1 CTAAACC
*
74600941 ATAAACC
1 CTAAACC
74600948 CTAAACC
1 CTAAACC
*
74600955 CTTAACAC
1 CTAAAC-C
* *
74600963 TTAACCC
1 CTAAACC
74600970 CT-AACTC
1 CTAAAC-C
*
74600977 CTAACCC
1 CTAAACC
74600984 CT-AACC
1 CTAAACC
74600990 CTTAAACC
1 C-TAAACC
74600998 CT-AACC
1 CTAAACC
74601004 CTTAAACC
1 C-TAAACC
*
74601012 ATAAA
1 CTAAA
74601017 TCATAATCTC
Statistics
Matches: 95, Mismatches: 23, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
6 11 0.12
7 64 0.67
8 20 0.21
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:74601002 original size:14 final size:14
Alignment explanation
Indices: 74600944--74601011 Score: 77
Period size: 14 Copynumber: 4.9 Consensus size: 14
74600934 ATAAATAATA
74600944 AACCC-TAAACCCTT
1 AACCCTTAAACCC-T
* *
74600958 AACACTTAACCCCT
1 AACCCTTAAACCCT
*
74600972 AACTCC-TAACCCCT
1 AAC-CCTTAAACCCT
74600986 AACCCTTAAACCCT
1 AACCCTTAAACCCT
74601000 AACCCTTAAACC
1 AACCCTTAAACC
74601012 ATAAATCATA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
13 2 0.04
14 38 0.81
15 7 0.15
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (14 bp):
AACCCTTAAACCCT
Found at i:74601016 original size:21 final size:21
Alignment explanation
Indices: 74600942--74601016 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
74600932 ATATAAATAA
*
74600942 TAAACCCTAAACCCTTAACACT
1 TAAACCCTAAACCC-TAACCCT
* *
74600964 TAACCCCT-AACTCCTAACCCC
1 TAAACCCTAAAC-CCTAACCCT
74600985 T-AACCCTTAAACCCTAACCCT
1 TAAACCC-TAAACCCTAACCCT
*
74601006 TAAACCATAAA
1 TAAACCCTAAA
74601017 TCATAATCTC
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
20 4 0.09
21 23 0.53
22 16 0.37
ACGTcount: A:0.39, C:0.40, G:0.00, T:0.21
Consensus pattern (21 bp):
TAAACCCTAAACCCTAACCCT
Found at i:74603772 original size:16 final size:16
Alignment explanation
Indices: 74603751--74603786 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
74603741 ACTATACACA
74603751 ATATCACCATATC-TGC
1 ATATCA-CATATCATGC
74603767 ATATCACATATCATGC
1 ATATCACATATCATGC
74603783 ATAT
1 ATAT
74603787 TATTCAACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (16 bp):
ATATCACATATCATGC
Found at i:74607632 original size:17 final size:17
Alignment explanation
Indices: 74607612--74607649 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
74607602 ACACGGCTAT
74607612 GTGACACACACAGTCAA
1 GTGACACACACAGTCAA
*
74607629 GTG--ACACACGGTCAA
1 GTGACACACACAGTCAA
74607644 GTGACA
1 GTGACA
74607650 TAGCCATGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 4
0.78 0.04 0.17
Matches are distributed among these distances:
15 14 0.78
17 4 0.22
ACGTcount: A:0.37, C:0.26, G:0.24, T:0.13
Consensus pattern (17 bp):
GTGACACACACAGTCAA
Found at i:74607635 original size:15 final size:15
Alignment explanation
Indices: 74607617--74607649 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
74607607 GCTATGTGAC
74607617 ACACACAGTCAAGTG
1 ACACACAGTCAAGTG
*
74607632 ACACACGGTCAAGTG
1 ACACACAGTCAAGTG
74607647 ACA
1 ACA
74607650 TAGCCATGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.12
Consensus pattern (15 bp):
ACACACAGTCAAGTG
Found at i:74609052 original size:25 final size:24
Alignment explanation
Indices: 74609015--74609071 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
74609005 TCCTGTACAA
74609015 GTATGCTCATACGAGCTCTAAATCG
1 GTATGCTCATACGAGCTCTAAA-CG
* *
74609040 GTATGCTCTTACGAGCTGTAAACG
1 GTATGCTCATACGAGCTCTAAACG
*
74609064 GTAAGCTC
1 GTATGCTC
74609072 CTCCAAGCTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 9 0.31
25 20 0.69
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (24 bp):
GTATGCTCATACGAGCTCTAAACG
Found at i:74609095 original size:25 final size:25
Alignment explanation
Indices: 74609064--74609121 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
74609054 GCTGTAAACG
74609064 GTAAGCTCCTCCAAGCTGAATAACA
1 GTAAGCTCCTCCAAGCTGAATAACA
** *
74609089 GTAAGCTCCTCTGAGCTGAATAACG
1 GTAAGCTCCTCCAAGCTGAATAACA
74609114 GTAAGCTC
1 GTAAGCTC
74609122 ATGCAAGCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (25 bp):
GTAAGCTCCTCCAAGCTGAATAACA
Found at i:74624587 original size:13 final size:13
Alignment explanation
Indices: 74624569--74624613 Score: 81
Period size: 13 Copynumber: 3.5 Consensus size: 13
74624559 CTATAAATTC
74624569 TGTTTTCAAGTTA
1 TGTTTTCAAGTTA
*
74624582 TGTTTTCAAGTCA
1 TGTTTTCAAGTTA
74624595 TGTTTTCAAGTTA
1 TGTTTTCAAGTTA
74624608 TGTTTT
1 TGTTTT
74624614 ACACGAGCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.20, C:0.09, G:0.16, T:0.56
Consensus pattern (13 bp):
TGTTTTCAAGTTA
Found at i:74625807 original size:17 final size:18
Alignment explanation
Indices: 74625774--74625809 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
74625764 AGTCATGTCT
74625774 TATGTTGTTATGCGAACC
1 TATGTTGTTATGCGAACC
*
74625792 TATGTTG-TATGTGAACC
1 TATGTTGTTATGCGAACC
74625809 T
1 T
74625810 TTATAACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.42
Consensus pattern (18 bp):
TATGTTGTTATGCGAACC
Found at i:74636168 original size:37 final size:37
Alignment explanation
Indices: 74636127--74636200 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
74636117 TTTAATAAAA
74636127 TAATTAGACCATTAATTTTAATAGTGGACAAAGATGG
1 TAATTAGACCATTAATTTTAATAGTGGACAAAGATGG
74636164 TAATTAGACCATTAATTTTAATAGTGGACAAAGATGG
1 TAATTAGACCATTAATTTTAATAGTGGACAAAGATGG
74636201 ACATCTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (37 bp):
TAATTAGACCATTAATTTTAATAGTGGACAAAGATGG
Found at i:74643188 original size:14 final size:13
Alignment explanation
Indices: 74643170--74643203 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
74643160 TAAATAATTA
74643170 ATTTTTTAATATT
1 ATTTTTTAATATT
74643183 ATTTTTTAATATT
1 ATTTTTTAATATT
74643196 ATTTTTTA
1 ATTTTTTA
74643204 TAAAACAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (13 bp):
ATTTTTTAATATT
Found at i:74643441 original size:20 final size:19
Alignment explanation
Indices: 74643390--74643443 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
74643380 TTCTAATGTT
74643390 TTTTTAGTAATTTTTTATA
1 TTTTTAGTAATTTTTTATA
* *
74643409 TTTTTCTGCAATTTTTTATA
1 TTTTT-AGTAATTTTTTATA
74643429 TTTTTAGTAAATTTT
1 TTTTTAGT-AATTTT
74643444 ATAATGATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 6 0.21
20 23 0.79
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.67
Consensus pattern (19 bp):
TTTTTAGTAATTTTTTATA
Found at i:74643727 original size:18 final size:18
Alignment explanation
Indices: 74643701--74643744 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
74643691 TCTTTTCAAC
*
74643701 AATATCATAAAATATATT
1 AATACCATAAAATATATT
*
74643719 AATACCATAAAATGTATT
1 AATACCATAAAATATATT
74643737 AATACCAT
1 AATACCAT
74643745 GCTTAAGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (18 bp):
AATACCATAAAATATATT
Found at i:74644100 original size:33 final size:33
Alignment explanation
Indices: 74644055--74644117 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
74644045 TAATTATTTT
74644055 AATTAATTAAATTTTATTAAAAT-TATATTTAAA
1 AATTAATTAAATTTT-TTAAAATATATATTTAAA
*
74644088 AATT-ATTGAAATTTTTTATAATATATATTT
1 AATTAATT-AAATTTTTTAAAATATATATTT
74644118 TAAATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
32 9 0.33
33 18 0.67
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (33 bp):
AATTAATTAAATTTTTTAAAATATATATTTAAA
Found at i:74646707 original size:58 final size:60
Alignment explanation
Indices: 74646645--74646777 Score: 180
Period size: 61 Copynumber: 2.2 Consensus size: 60
74646635 ATAATTTTAA
* *
74646645 TATTAAATTAATATAATACTTA-T-GAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATATAATACTTACTAGAAGATAAATATTAAATTAAATTTAATATTAAAAC
* **
74646703 TATTAAATTAATAGAATGTTTATCTAGAAGATAAATATTAAATTAAATTTAATATTAAAAC
1 TATTAAATTAATATAATACTTA-CTAGAAGATAAATATTAAATTAAATTTAATATTAAAAC
* *
74646764 TAGTAAAATAATAT
1 TATTAAATTAATAT
74646778 CATCTTTGGA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
58 19 0.30
60 1 0.02
61 44 0.69
ACGTcount: A:0.51, C:0.03, G:0.06, T:0.40
Consensus pattern (60 bp):
TATTAAATTAATATAATACTTACTAGAAGATAAATATTAAATTAAATTTAATATTAAAAC
Found at i:74650231 original size:27 final size:26
Alignment explanation
Indices: 74650178--74650231 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
74650168 AAAGGTTGTT
* * *
74650178 AAAACTCCTTTAAAAGAAAACTCAAG
1 AAAAATCCTTAAAAAGAAAACTAAAG
74650204 AAAAATCCTTAAAAAGAAAACCTAAAG
1 AAAAATCCTTAAAAAGAAAA-CTAAAG
74650231 A
1 A
74650232 GAAGTTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.59, C:0.17, G:0.07, T:0.17
Consensus pattern (26 bp):
AAAAATCCTTAAAAAGAAAACTAAAG
Found at i:74651854 original size:21 final size:21
Alignment explanation
Indices: 74651829--74651870 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74651819 GTTTCTGGGT
*
74651829 TTTTCTTCATTTTCAATTTCC
1 TTTTCTACATTTTCAATTTCC
* *
74651850 TTTTCTAGATTTTCTATTTCC
1 TTTTCTACATTTTCAATTTCC
74651871 ATCTCATTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.14, C:0.21, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTCTACATTTTCAATTTCC
Found at i:74653392 original size:103 final size:104
Alignment explanation
Indices: 74653148--74653413 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
74653138 GTTGTACATA
** *
74653148 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
74653213 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
74653252 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
74653317 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
74653355 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
74653414 AATAACGGTT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:74660884 original size:103 final size:104
Alignment explanation
Indices: 74660640--74660905 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
74660630 GTTGTACATA
** *
74660640 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
74660705 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
74660744 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
74660809 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
74660847 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
74660906 AATAACGGTT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:74669441 original size:11 final size:11
Alignment explanation
Indices: 74669421--74669522 Score: 77
Period size: 11 Copynumber: 9.4 Consensus size: 11
74669411 TTAAAAATTA
74669421 AAAAAGTATTTT
1 AAAAA-TATTTT
74669433 AAAAATATTTT
1 AAAAATATTTT
* ***
74669444 AAAATTA-AAA
1 AAAAATATTTT
74669454 AAAAAGTATTTT
1 AAAAA-TATTTT
*
74669466 TAAAATATTTT
1 AAAAATATTTT
*
74669477 TAAAATATTTT
1 AAAAATATTTT
**
74669488 --AAA-ATTAA
1 AAAAATATTTT
74669496 AAAAAGTATTTT
1 AAAAA-TATTTT
74669508 AAAAATATTTT
1 AAAAATATTTT
74669519 AAAA
1 AAAA
74669523 TTTAAAAAAT
Statistics
Matches: 71, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
8 3 0.04
9 3 0.04
10 7 0.10
11 41 0.58
12 17 0.24
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:74669475 original size:44 final size:42
Alignment explanation
Indices: 74669421--74669522 Score: 159
Period size: 42 Copynumber: 2.4 Consensus size: 42
74669411 TTAAAAATTA
74669421 AAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAAAAGTATTTT
1 AAAAA-TATTTTAAAAATATTTTAAAATT--AAAAAAAGTATTTT
* *
74669466 TAAAATATTTTTAAAATATTTTAAAATTAAAAAAAGTATTTT
1 AAAAATATTTTAAAAATATTTTAAAATTAAAAAAAGTATTTT
74669508 AAAAATATTTTAAAA
1 AAAAATATTTTAAAA
74669523 TTTAAAAAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 27 0.51
44 22 0.42
45 4 0.08
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (42 bp):
AAAAATATTTTAAAAATATTTTAAAATTAAAAAAAGTATTTT
Found at i:74669513 original size:31 final size:30
Alignment explanation
Indices: 74669467--74669532 Score: 105
Period size: 31 Copynumber: 2.2 Consensus size: 30
74669457 AAGTATTTTT
*
74669467 AAAATATTTTTAAAATATTTTAAAATTAAA
1 AAAATATTTTAAAAATATTTTAAAATTAAA
*
74669497 AAAAGTATTTTAAAAATATTTTAAAATTTAA
1 AAAA-TATTTTAAAAATATTTTAAAATTAAA
74669528 AAAAT
1 AAAAT
74669533 TTAAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 5 0.15
31 28 0.85
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (30 bp):
AAAATATTTTAAAAATATTTTAAAATTAAA
Found at i:74669528 original size:18 final size:16
Alignment explanation
Indices: 74669505--74669538 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
74669495 AAAAAAGTAT
74669505 TTTAAAAATATTTTAAAA
1 TTTAAAAA-A-TTTAAAA
74669523 TTTAAAAAATTTAAAA
1 TTTAAAAAATTTAAAA
74669539 AATAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TTTAAAAAATTTAAAA
Found at i:74669540 original size:18 final size:18
Alignment explanation
Indices: 74669505--74669552 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
74669495 AAAAAAGTAT
*
74669505 TTTAAAAATATTTTAAAA
1 TTTAAAAATATTTAAAAA
74669523 TTTAAAAA-ATTTAAAAA
1 TTTAAAAATATTTAAAAA
* *
74669540 -ATAAATATATTTA
1 TTTAAAAATATTTA
74669553 TTATATCGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 5 0.19
17 13 0.50
18 8 0.31
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTAAAAATATTTAAAAA
Found at i:74674229 original size:13 final size:13
Alignment explanation
Indices: 74674194--74674231 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
74674184 TTTATAAATT
*
74674194 ATAAAAGATTTAA
1 ATAAAATATTTAA
74674207 ATAAAATATTTAA
1 ATAAAATATTTAA
74674220 A-AAAATTATTTA
1 ATAAAA-TATTTA
74674232 GGTGGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (13 bp):
ATAAAATATTTAA
Found at i:74676471 original size:22 final size:23
Alignment explanation
Indices: 74676443--74676490 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
74676433 ACACGTTAGC
74676443 AAACAAATA-TATAAATAT-AAAT
1 AAACAAATACT-TAAATATAAAAT
*
74676465 AAACAAATACTTATATATAAAAT
1 AAACAAATACTTAAATATAAAAT
74676488 AAA
1 AAA
74676491 ATAAATTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (23 bp):
AAACAAATACTTAAATATAAAAT
Found at i:74680192 original size:79 final size:79
Alignment explanation
Indices: 74680061--74680219 Score: 318
Period size: 79 Copynumber: 2.0 Consensus size: 79
74680051 CATGCTGATA
74680061 TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
1 TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
74680126 TGTTGTTTGTGTTT
66 TGTTGTTTGTGTTT
74680140 TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
1 TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
74680205 TGTTGTTTGTGTTT
66 TGTTGTTTGTGTTT
74680219 T
1 T
74680220 AATGAATAAG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 80 1.00
ACGTcount: A:0.18, C:0.04, G:0.24, T:0.55
Consensus pattern (79 bp):
TGTGACGTATTTAGGTTCTACTATGTATTATGTGTGTATTTAAGTATGTTTTGGTATTGATTTGA
TGTTGTTTGTGTTT
Found at i:74680506 original size:52 final size:52
Alignment explanation
Indices: 74680423--74680523 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
74680413 TAAGGCAACG
* *
74680423 TAATGGACAGCAGCTTAAGATCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
74680475 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
1 TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAA
74680524 TATGTGCATG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (52 bp):
TAATAGACAGCAGCTTAAGACCTCATTTCTAGCTCGGTTGAAGCTCAAACAA
Found at i:74686779 original size:87 final size:86
Alignment explanation
Indices: 74686583--74686894 Score: 339
Period size: 87 Copynumber: 3.7 Consensus size: 86
74686573 AACAAAATCA
* * * **
74686583 AAATAAAATCTGTTAAACGGC-GAGAATAAATCCCAAAATAGA--TTACTCAA-TTTAATTCTAT
1 AAATAAAATCTGTTAAACGACAG-GAATAAATCCCAAAACAGATTTTATTCAATTTTAATTCTCG
* *
74686644 TTTGGAAACAAAAT-TAAAATC
65 TTTGGAAACAAAATAAAAAATG
* * * *
74686665 AAATAAAATCTATTAAACGGCAGGAATAAATCTCAAAACAGATTTTATTTAATTTTAAATTCTCG
1 AAATAAAATCTGTTAAACGACAGGAATAAATCCCAAAACAGATTTTATTCAATTTT-AATTCTCG
74686730 TTTGGAAACAAAATAAAAAATG
65 TTTGGAAACAAAATAAAAAATG
* * * * * *
74686752 GAATAAAATCTGTTGAATGAC-GAGAATAAATCCCAAAAAAGATTTTATTTAATTTTAATACTCG
1 AAATAAAATCTGTTAAACGACAG-GAATAAATCCCAAAACAGATTTTATTCAATTTTAATTCTCG
* *
74686816 TTTTGAAACAAAGTCAAAAAATG
65 TTTGGAAACAAAAT-AAAAAATG
* * * *
74686839 AAATAAAATATGTTGAACAACAGGAATAAATCCTAAAACAGATTTTATTCAATTTT
1 AAATAAAATCTGTTAAACGACAGGAATAAATCCCAAAACAGATTTTATTCAATTTT
74686895 TATTTTTATT
Statistics
Matches: 195, Mismatches: 26, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
82 37 0.19
83 1 0.01
84 6 0.03
85 3 0.02
86 40 0.21
87 107 0.55
88 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (86 bp):
AAATAAAATCTGTTAAACGACAGGAATAAATCCCAAAACAGATTTTATTCAATTTTAATTCTCGT
TTGGAAACAAAATAAAAAATG
Found at i:74686882 original size:174 final size:169
Alignment explanation
Indices: 74686584--74686894 Score: 392
Period size: 174 Copynumber: 1.8 Consensus size: 169
74686574 ACAAAATCAA
* * *
74686584 AATAAAATCTGTTAAACGGCGAGAATAAATCCCAAAATAGATTACTCAATTTAATTCTATTTTGG
1 AATAAAATCTGTTAAACGACGAGAATAAATCCCAAAAAAGATTACTCAATTTAATACTATTTTGG
* * **
74686649 AAACAAAATTAAAATCAAATAAAATCTATTAAACGGCAGGAATAAATCTCAAAACAGATTTTATT
66 AAACAAAATAAAAATCAAATAAAATATATTAAACAACAGGAATAAATCTCAAAACAGATTTTATT
*
74686714 TAATTTTAAATTCTCGTTTGGAAACAAAATAAAAAATGG
131 CAATTTTAAATTCTCGTTTGGAAACAAAATAAAAAATGG
* * * * *
74686753 AATAAAATCTGTTGAATGACGAGAATAAATCCCAAAAAAGATTTTATTTAATTTTAATACTCGTT
1 AATAAAATCTGTTAAACGACGAGAATAAATCCCAAAAAAGA--TTACTCAA-TTTAATACT-ATT
* * * *
74686818 TT-GAAACAAAGTCAAAAAATGAAATAAAATATGTTGAACAACAGGAATAAATC-CTAAAACAGA
62 TTGGAAACAAAAT--AAAAATCAAATAAAATATATTAAACAACAGGAATAAATCTC-AAAACAGA
74686881 TTTTATTCAATTTT
124 TTTTATTCAATTTT
74686895 TATTTTTATT
Statistics
Matches: 118, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
169 37 0.31
171 6 0.05
172 17 0.14
173 5 0.04
174 53 0.45
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (169 bp):
AATAAAATCTGTTAAACGACGAGAATAAATCCCAAAAAAGATTACTCAATTTAATACTATTTTGG
AAACAAAATAAAAATCAAATAAAATATATTAAACAACAGGAATAAATCTCAAAACAGATTTTATT
CAATTTTAAATTCTCGTTTGGAAACAAAATAAAAAATGG
Found at i:74687296 original size:14 final size:14
Alignment explanation
Indices: 74687277--74687307 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
74687267 ATCGAAGCAA
74687277 TAACACCTCTGCAG
1 TAACACCTCTGCAG
*
74687291 TAACACCTTTGCAG
1 TAACACCTCTGCAG
74687305 TAA
1 TAA
74687308 TCAACGAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (14 bp):
TAACACCTCTGCAG
Found at i:74688417 original size:20 final size:20
Alignment explanation
Indices: 74688392--74688430 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
74688382 GTTAATGTGA
*
74688392 AAATTTGTGACTATATTTTG
1 AAATTTGTCACTATATTTTG
74688412 AAATTTGTCACTATATTTT
1 AAATTTGTCACTATATTTT
74688431 ACTTTAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.51
Consensus pattern (20 bp):
AAATTTGTCACTATATTTTG
Found at i:74688461 original size:12 final size:12
Alignment explanation
Indices: 74688444--74688470 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
74688434 TTAATTGATG
74688444 TTTGCCATTATA
1 TTTGCCATTATA
74688456 TTTGCCATTATA
1 TTTGCCATTATA
74688468 TTT
1 TTT
74688471 TACTCTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (12 bp):
TTTGCCATTATA
Found at i:74691280 original size:19 final size:18
Alignment explanation
Indices: 74691253--74691305 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
74691243 GTAAGGGTTA
*
74691253 ATTTCATTTTTTTAATATT
1 ATTTAATTTTTTTAAT-TT
74691272 ATTTAATTTTTTATAATTT
1 ATTTAATTTTTT-TAATTT
*
74691291 AATTAATATTTTTTA
1 ATTTAAT-TTTTTTA
74691306 TAATAGTCGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 21 0.70
20 9 0.30
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTTAATTTTTTTAATTT
Found at i:74693346 original size:59 final size:59
Alignment explanation
Indices: 74693240--74693443 Score: 309
Period size: 59 Copynumber: 3.4 Consensus size: 59
74693230 ATTGATTTAT
* * *
74693240 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTAAATAAAATGGAAGTTC
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTA
* * *
74693299 TTTTGAATATTTTTGTACAAATTATTTTTATATGGTTTTATTTAATAAAATAAAAGTTA
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTA
* * * *
74693358 TTTTGAATATTTTTATACAACTTATTTTTATATTATTTCATTTAATAAAATAGAAGTTG
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTA
74693417 TTTTGAATATTTTTGTACAAATATATT
1 TTTTGAATATTTTTGTACAAAT-TATT
74693444 ACTGACTATG
Statistics
Matches: 129, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
59 125 0.97
60 4 0.03
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.52
Consensus pattern (59 bp):
TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAATAGAAGTTA
Found at i:74693519 original size:29 final size:28
Alignment explanation
Indices: 74693487--74693565 Score: 70
Period size: 29 Copynumber: 2.7 Consensus size: 28
74693477 TAAAAAAATC
*
74693487 CATCTAGTCAAAATAATTTTTTCAGAACA
1 CATCTAGTCAAAAT-ATTTTTTCAAAACA
* *
74693516 CATC-ATGTCAAATTTATTTTTTCAAAATA
1 CATCTA-GTCAAA-ATATTTTTTCAAAACA
* *
74693545 CATATTGTCAAAAGTATTTTT
1 CATCTAGTCAAAA-TATTTTT
74693566 CCCATAACAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
28 1 0.03
29 38 0.95
30 1 0.03
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (28 bp):
CATCTAGTCAAAATATTTTTTCAAAACA
Found at i:74693635 original size:24 final size:23
Alignment explanation
Indices: 74693594--74693638 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
74693584 AATTAAAAAA
*
74693594 AATTAAACCCTAAAACCCTAAAC
1 AATTAAAACCTAAAACCCTAAAC
*
74693617 AATTAAAAACCTAATACCCTAA
1 AATT-AAAACCTAAAACCCTAA
74693639 TTTAATTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (23 bp):
AATTAAAACCTAAAACCCTAAAC
Found at i:74694282 original size:22 final size:20
Alignment explanation
Indices: 74694251--74694291 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
74694241 AAATTTAAAA
74694251 ATTTTAAAAATATATAAAAATT
1 ATTTTAAAAA-A-ATAAAAATT
*
74694273 ATTTTTAAAAAATAAAAAT
1 ATTTTAAAAAAATAAAAAT
74694292 CATTAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 9 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
ATTTTAAAAAAATAAAAATT
Found at i:74710246 original size:69 final size:68
Alignment explanation
Indices: 74710166--74710484 Score: 266
Period size: 69 Copynumber: 4.6 Consensus size: 68
74710156 CCTAGTTTTC
* * *
74710166 ATAGTCCAACCATATTCTTACATAGTATATTCC-CCTTGTTTACTGTCCTGGCAAACTATTCTGG
1 ATAGTCCAACCATAGTCTTACAT-GTATATTCCTCC-TGTTTACTGTCCTGGCAAACTATCCAGG
*
74710230 TTGTT
64 TTGCT
* * * **
74710235 ATAGTCTAACCATGGTCTTAGACTGTATATTCCTCCTGTTTACTGTCCTGGTGAACTATCCAGGT
1 ATAGTCCAACCATAGTCTTACA-TGTATATTCCTCCTGTTTACTGTCCTGGCAAACTATCCAGGT
74710300 TGCT
65 TGCT
* * ** ** *
74710304 ATAGTCCAACCATAGTCTTACATCGAATATTCATTATGTTTACTGT-CTCGGTGAACTATCCTGG
1 ATAGTCCAACCATAGTCTTACAT-GTATATTCCTCCTGTTTACTGTCCT-GGCAAACTATCCAGG
*
74710368 TTGCC
64 TTGCT
* * * ** * * ** * *
74710373 ATAGTCCAACCATGGTATTATACTAAATATTTCTCGTGTTTACTGTTATGGCAGACTATCCTGGT
1 ATAGTCCAACCATAGTCTTACA-TGTATATTCCTCCTGTTTACTGTCCTGGCAAACTATCCAGGT
*
74710438 TGCC
65 TGCT
* * *
74710442 ATAGTCCAACCATGGTCTTA-ACCGTATATTCCTCATGTTTACT
1 ATAGTCCAACCATAGTCTTACA-TGTATATTCCTCCTGTTTACT
74710485 CAGAGTTTTG
Statistics
Matches: 208, Mismatches: 36, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
68 21 0.10
69 182 0.88
70 5 0.02
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (68 bp):
ATAGTCCAACCATAGTCTTACATGTATATTCCTCCTGTTTACTGTCCTGGCAAACTATCCAGGTT
GCT
Found at i:74710323 original size:138 final size:138
Alignment explanation
Indices: 74710165--74710484 Score: 351
Period size: 138 Copynumber: 2.3 Consensus size: 138
74710155 ACCTAGTTTT
* * * *
74710165 CATAGTCCAACCATATTCTTACATAGTATATTCCCCTTGTTTACTGTC-CTGGCAAACTATTCTG
1 CATAGTCCAACCATAGTCTTACATCGTATATTCCACTTGTTTACTGTCTC-GGCAAACTATCCTG
** * * ** * *
74710229 GTTGTTATAGTCTAACCATGGTCTTAGACTGTATATTCCTCCTGTTTACTGTCCTGG-TGAACTA
65 GTTGCCATAGTCCAACCATGGTATTAGACTAAATATTCCTCCTGTTTACTGTCATGGCAG-ACTA
74710293 TCCAGGTTGC
129 TCCAGGTTGC
* * * **
74710303 TATAGTCCAACCATAGTCTTACATCGAATATT-CATTATGTTTACTGTCTCGGTGAACTATCCTG
1 CATAGTCCAACCATAGTCTTACATCGTATATTCCACT-TGTTTACTGTCTCGGCAAACTATCCTG
* * * *
74710367 GTTGCCATAGTCCAACCATGGTATTATACTAAATATTTCTCGTGTTTACTGTTATGGCAGACTAT
65 GTTGCCATAGTCCAACCATGGTATTAGACTAAATATTCCTCCTGTTTACTGTCATGGCAGACTAT
*
74710432 CCTGGTTGC
130 CCAGGTTGC
* * * *
74710441 CATAGTCCAACCATGGTCTTA-ACCGTATATTCCTCATGTTTACT
1 CATAGTCCAACCATAGTCTTACATCGTATATTCCACTTGTTTACT
74710485 CAGAGTTTTG
Statistics
Matches: 149, Mismatches: 29, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
137 18 0.12
138 129 0.87
139 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (138 bp):
CATAGTCCAACCATAGTCTTACATCGTATATTCCACTTGTTTACTGTCTCGGCAAACTATCCTGG
TTGCCATAGTCCAACCATGGTATTAGACTAAATATTCCTCCTGTTTACTGTCATGGCAGACTATC
CAGGTTGC
Found at i:74712979 original size:29 final size:27
Alignment explanation
Indices: 74712947--74713047 Score: 84
Period size: 29 Copynumber: 3.7 Consensus size: 27
74712937 ATATAAACAG
74712947 TAATAAACATAACATATATAATATCCTAC
1 TAATAAACAT-ACATA-ATAATATCCTAC
* *
74712976 TAATATACATACATAAT-ATA-CATAC
1 TAATAAACATACATAATAATATCCTAC
*
74713001 --ATAAACATTAATATACATAATATCCATAC
1 TAATAAACA-T-ACATA-ATAATATCC-TAC
*
74713030 TAATATACATACATAATA
1 TAATAAACATACATAATA
74713048 GACATAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
23 6 0.11
24 1 0.02
25 8 0.14
26 5 0.09
27 5 0.09
28 9 0.16
29 16 0.28
30 1 0.02
31 6 0.11
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (27 bp):
TAATAAACATACATAATAATATCCTAC
Found at i:74712990 original size:54 final size:54
Alignment explanation
Indices: 74712931--74713057 Score: 172
Period size: 54 Copynumber: 2.4 Consensus size: 54
74712921 TAAAGTCAGT
*
74712931 TACATAATATAAACAGTA-ATAAACA-TAACATATATAATATCC-TACTAATATACA
1 TACATAATAT--ACA-TACATAAACATTAACATACATAATATCCATACTAATATACA
*
74712985 TACATAATATACATACATAAACATTAATATACATAATATCCATACTAATATACA
1 TACATAATATACATACATAAACATTAACATACATAATATCCATACTAATATACA
*
74713039 TACATAATAGACATA-ATAA
1 TACATAATATACATACATAA
74713058 TATACAATTG
Statistics
Matches: 67, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
51 2 0.03
52 10 0.15
53 19 0.28
54 36 0.54
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.30
Consensus pattern (54 bp):
TACATAATATACATACATAAACATTAACATACATAATATCCATACTAATATACA
Found at i:74712998 original size:9 final size:9
Alignment explanation
Indices: 74712984--74713056 Score: 60
Period size: 9 Copynumber: 8.1 Consensus size: 9
74712974 ACTAATATAC
74712984 ATACATAAT
1 ATACATAAT
74712993 ATACATACAT
1 ATACATA-AT
*
74713003 AAACATTAAT
1 ATACA-TAAT
74713013 ATACATAAT
1 ATACATAAT
* *
74713022 ATCCATACT
1 ATACATAAT
* *
74713031 A-ATAT-AC
1 ATACATAAT
74713038 ATACATAAT
1 ATACATAAT
*
74713047 AGACATAAT
1 ATACATAAT
74713056 A
1 A
74713057 ATATACAATT
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
7 1 0.02
8 5 0.10
9 29 0.59
10 12 0.24
11 2 0.04
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.30
Consensus pattern (9 bp):
ATACATAAT
Found at i:74713003 original size:41 final size:40
Alignment explanation
Indices: 74712931--74713044 Score: 110
Period size: 41 Copynumber: 2.8 Consensus size: 40
74712921 TAAAGTCAGT
* *
74712931 TACATAATATA-A-ACAGTAATAAACATAACATATA-TAATA
1 TACATAATATACATACA-TAATATACAT-ACATACATTAATA
*
74712970 TCCTACTAATATACATACATAATATACATACATAAACATTAATA
1 TAC-A-TAATATACATACATAATATACATACAT--ACATTAATA
*
74713014 TACATAATATCCATAC-TAATATACATACATA
1 TACATAATATACATACATAATATACATACATA
74713045 ATAGACATAA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
39 3 0.05
40 1 0.02
41 25 0.40
42 21 0.33
43 6 0.10
44 7 0.11
ACGTcount: A:0.53, C:0.16, G:0.01, T:0.31
Consensus pattern (40 bp):
TACATAATATACATACATAATATACATACATACATTAATA
Found at i:74713005 original size:62 final size:65
Alignment explanation
Indices: 74712939--74713063 Score: 159
Period size: 62 Copynumber: 2.0 Consensus size: 65
74712929 GTTACATAAT
* *
74712939 ATAAACAGTAATAAACATAACAT-ATA-TAATAT-CCTAC-TAATATACATACATAATATACATA
1 ATAAACAGTAATAAACATAACATCATACTAATATACATACATAATAGACATA-ATAATATACATA
74713000 C
65 C
* * *
74713001 ATAAACATTAATATACATAATATCCATACTAATATACATACATAATAGACATAATAATATACA
1 ATAAACAGTAATAAACATAACAT-CATACTAATATACATACATAATAGACATAATAATATACA
74713064 ATTGACTGAC
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
62 20 0.38
64 3 0.06
65 6 0.11
66 14 0.26
67 10 0.19
ACGTcount: A:0.54, C:0.15, G:0.02, T:0.30
Consensus pattern (65 bp):
ATAAACAGTAATAAACATAACATCATACTAATATACATACATAATAGACATAATAATATACATAC
Found at i:74713035 original size:12 final size:13
Alignment explanation
Indices: 74712931--74713063 Score: 105
Period size: 13 Copynumber: 10.0 Consensus size: 13
74712921 TAAAGTCAGT
74712931 TACATAATATA-A
1 TACATAATATACA
*
74712943 -ACAGTAATAAACA
1 TACA-TAATATACA
*
74712956 TAACATATATAATATCC
1 T-ACATA-AT-ATA-CA
74712973 TAC-TAATATACA
1 TACATAATATACA
74712985 TACATAATATACA
1 TACATAATATACA
* *
74712998 TACATAAACATTAATA
1 TACAT-AATA-T-ACA
*
74713014 TACATAATATCCA
1 TACATAATATACA
74713027 TAC-TAATATACA
1 TACATAATATACA
*
74713039 TACATAATAGACA
1 TACATAATATACA
74713052 TA-ATAATATACA
1 TACATAATATACA
74713064 ATTGACTGAC
Statistics
Matches: 97, Mismatches: 12, Indels: 24
0.73 0.09 0.18
Matches are distributed among these distances:
11 3 0.03
12 30 0.31
13 32 0.33
14 8 0.08
15 11 0.11
16 11 0.11
17 2 0.02
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (13 bp):
TACATAATATACA
Found at i:74713041 original size:25 final size:25
Alignment explanation
Indices: 74712958--74713063 Score: 81
Period size: 25 Copynumber: 4.6 Consensus size: 25
74712948 AATAAACATA
* *
74712958 ACATATATAATAT-CCTACTAATAT
1 ACATACATAATATACATACTAATAT
*
74712982 ACATACATAATATACATAC--ATAA
1 ACATACATAATATACATACTAATAT
74713005 ACAT---TAATATAC--A-TAATAT
1 ACATACATAATATACATACTAATAT
* *
74713024 CCATAC-TAATATACATACATAATAG
1 ACATACATAATATACATAC-TAATAT
74713049 ACATA-ATAATATACA
1 ACATACATAATATACA
74713064 ATTGACTGAC
Statistics
Matches: 65, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
18 1 0.02
19 6 0.09
20 8 0.12
21 8 0.12
23 8 0.12
24 12 0.18
25 22 0.34
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.31
Consensus pattern (25 bp):
ACATACATAATATACATACTAATAT
Found at i:74714767 original size:4 final size:4
Alignment explanation
Indices: 74714760--74714785 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
74714750 TTAATTAGTA
74714760 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
74714786 TTAGTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:74721901 original size:19 final size:20
Alignment explanation
Indices: 74721877--74721929 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 20
74721867 ATTTTTATAA
74721877 ATATTTTTTTACGA-AATTT
1 ATATTTTTTTACGATAATTT
* **
74721896 ATATTTCTTTAC-ATTTTTT
1 ATATTTTTTTACGATAATTT
74721915 ATAATTTTTTTACGA
1 AT-ATTTTTTTACGA
74721930 CCTTATAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 1 0.04
19 16 0.59
20 9 0.33
21 1 0.04
ACGTcount: A:0.28, C:0.08, G:0.04, T:0.60
Consensus pattern (20 bp):
ATATTTTTTTACGATAATTT
Found at i:74721964 original size:28 final size:28
Alignment explanation
Indices: 74721932--74722021 Score: 119
Period size: 29 Copynumber: 3.2 Consensus size: 28
74721922 TTTTACGACC
74721932 TTATAAAATTTTATATTTTTTTATATTT
1 TTATAAAATTTTATATTTTTTTATATTT
* * *
74721960 CTAT-ATATTTTATAATTTTTTATGATTT
1 TTATAAAATTTTATATTTTTTTAT-ATTT
*
74721988 TTATAAAATTTTAAATTTTTTTACTATTT
1 TTATAAAATTTTATATTTTTTTA-TATTT
74722017 TTATA
1 TTATA
74722022 TTTTTAAAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 17 0.33
28 10 0.19
29 24 0.46
30 1 0.02
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (28 bp):
TTATAAAATTTTATATTTTTTTATATTT
Found at i:74721980 original size:10 final size:10
Alignment explanation
Indices: 74721940--74722026 Score: 53
Period size: 10 Copynumber: 9.3 Consensus size: 10
74721930 CCTTATAAAA
*
74721940 TTTTATATTT
1 TTTTATAATT
74721950 TTTTAT-A-T
1 TTTTATAATT
* *
74721958 TTCTAT-ATA
1 TTTTATAATT
74721967 TTTTATAATT
1 TTTTATAATT
*
74721977 TTTTATGA-T
1 TTTTATAATT
**
74721986 TTTTATAAAA
1 TTTTATAATT
74721996 TTTTA-AATT
1 TTTTATAATT
*
74722005 TTTT-TACTAT
1 TTTTATAAT-T
74722015 TTTTAT-ATT
1 TTTTATAATT
74722024 TTT
1 TTT
74722027 AAAACTTTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 13
0.70 0.14 0.15
Matches are distributed among these distances:
8 7 0.12
9 25 0.42
10 26 0.44
11 1 0.02
ACGTcount: A:0.28, C:0.02, G:0.01, T:0.69
Consensus pattern (10 bp):
TTTTATAATT
Found at i:74721989 original size:19 final size:18
Alignment explanation
Indices: 74721940--74722043 Score: 75
Period size: 19 Copynumber: 5.6 Consensus size: 18
74721930 CCTTATAAAA
*
74721940 TTTTATATTTTT-TTATAT
1 TTTTATATTTTTATAAT-T
*
74721958 TTCTATATATTTTATAATT
1 TTTTATAT-TTTTATAATT
**
74721977 TTTTATGATTTTTATAAAA
1 TTTTAT-ATTTTTATAATT
* * *
74721996 TTTTAAATTTTTTTACTAT
1 TTTTATATTTTTATAAT-T
*
74722015 TTTTATATTTTTAAAACTT
1 TTTTATATTTTTATAA-TT
*
74722034 TTTAATATTT
1 TTTTATATTT
74722044 GATTTTTTTA
Statistics
Matches: 66, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
18 15 0.23
19 45 0.68
20 6 0.09
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (18 bp):
TTTTATATTTTTATAATT
Found at i:74721992 original size:56 final size:56
Alignment explanation
Indices: 74721932--74722037 Score: 160
Period size: 56 Copynumber: 1.9 Consensus size: 56
74721922 TTTTACGACC
* * *
74721932 TTATAAAATTTTATATTTTTTTA-TATTTCTATATATTTTATAATTTTTTATGATTT
1 TTATAAAATTTTAAATTTTTTTACTATTTCTATAT-TTTTAAAACTTTTTATGATTT
*
74721988 TTATAAAATTTTAAATTTTTTTACTATTTTTATATTTTTAAAACTTTTTA
1 TTATAAAATTTTAAATTTTTTTACTATTTCTATATTTTTAAAACTTTTTA
74722038 ATATTTGATT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
56 35 0.78
57 10 0.22
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (56 bp):
TTATAAAATTTTAAATTTTTTTACTATTTCTATATTTTTAAAACTTTTTATGATTT
Found at i:74722023 original size:8 final size:8
Alignment explanation
Indices: 74721939--74722027 Score: 52
Period size: 9 Copynumber: 9.9 Consensus size: 8
74721929 ACCTTATAAA
74721939 ATTTTATAT
1 ATTTT-TAT
*
74721948 TTTTTTAT
1 ATTTTTAT
*
74721956 ATTTCTAT
1 ATTTTTAT
74721964 ATATTTTAT
1 AT-TTTTAT
74721973 AATTTTTTAT
1 -A-TTTTTAT
74721983 GATTTTTAT
1 -ATTTTTAT
*
74721992 AAAATTTTAAAT
1 ---ATTTT-TAT
*
74722004 TTTTTTACT
1 ATTTTTA-T
74722013 ATTTTTAT
1 ATTTTTAT
74722021 ATTTTTA
1 ATTTTTA
74722028 AAACTTTTTA
Statistics
Matches: 63, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
8 20 0.32
9 27 0.43
10 8 0.13
11 6 0.10
12 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.67
Consensus pattern (8 bp):
ATTTTTAT
Found at i:74722028 original size:27 final size:26
Alignment explanation
Indices: 74721940--74722043 Score: 93
Period size: 27 Copynumber: 3.8 Consensus size: 26
74721930 CCTTATAAAA
* *
74721940 TTTTATATTTTTTTATATTTCTATAT
1 TTTTAAATTTTTTTATATTTTTATAT
*
74721966 ATTTTATAA-TTTTTTATGATTTTTATAAAA
1 -TTTTA-AATTTTTTTAT-ATTTTTAT--AT
74721996 TTTTAAATTTTTTTACTATTTTTATAT
1 TTTTAAATTTTTTTA-TATTTTTATAT
* *
74722023 TTTTAAAACTTTTTAATATTT
1 TTTT-AAATTTTTTTATATTT
74722044 GATTTTTTTA
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
27 23 0.36
28 19 0.30
29 20 0.31
30 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (26 bp):
TTTTAAATTTTTTTATATTTTTATAT
Found at i:74722035 original size:29 final size:27
Alignment explanation
Indices: 74721946--74722043 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 27
74721936 AAAATTTTAT
* *
74721946 ATTTTTTTATATTTCTATATATTTTATA
1 ATTTTTTTATATTTTTATAT-TTTTAAA
*
74721974 A-TTTTTTATGATTTTTATAAAATTTT-AA
1 ATTTTTTTAT-ATTTTTAT--ATTTTTAAA
74722002 ATTTTTTTACTATTTTTATATTTTTAAA
1 ATTTTTTTA-TATTTTTATATTTTTAAA
* *
74722030 ACTTTTTAATATTT
1 ATTTTTTTATATTT
74722044 GATTTTTTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
27 18 0.31
28 19 0.33
29 19 0.33
30 2 0.03
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (27 bp):
ATTTTTTTATATTTTTATATTTTTAAA
Found at i:74722211 original size:90 final size:90
Alignment explanation
Indices: 74722117--74722345 Score: 331
Period size: 90 Copynumber: 2.5 Consensus size: 90
74722107 AATCTTTAAT
74722117 AAAAGAAAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGTCTTTTTGACACATTTTGAAAG
1 AAAAGAAAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGTCTTTTTGACACATTTTGAAAG
*
74722182 TTCAAGTACCCAATTGAGTGA-AAAA
66 TTCAAATACCCAATTGAGT-ACAAAA
** * * **
74722207 AAAAGGTAGGGGCTTAATTGCTTTTTTTTAAAAGGTTTGAGGG-CTTTTTTGATGCATTTTGAAA
1 AAAAGAAAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGTC-TTTTTGACACATTTTGAAA
74722271 GTTCAAATACCCAATTGAGTACAAAA
65 GTTCAAATACCCAATTGAGTACAAAA
74722297 AAAA-AACAGGGGCTTAATTG-TTTTTGTTGAAAAAGTTTGAGGGTCTTTT
1 AAAAGAA-AGGGGCTTAATTGCTTTTT-TTGAAAAAGTTTGAGGGTCTTTT
74722346 GCACCCTTAA
Statistics
Matches: 123, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
89 7 0.06
90 115 0.93
91 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (90 bp):
AAAAGAAAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGTCTTTTTGACACATTTTGAAAG
TTCAAATACCCAATTGAGTACAAAA
Found at i:74728599 original size:20 final size:21
Alignment explanation
Indices: 74728576--74728629 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 21
74728566 CTTCACTTGA
74728576 AAAAAAAAAGAAACAAAAA-G
1 AAAAAAAAAGAAACAAAAACG
* *
74728596 AAAAAAAAGGAAAAGAAAAACG
1 AAAAAAAAAG-AAACAAAAACG
74728618 AAAAATAAAAGA
1 AAAAA-AAAAGA
74728630 GAAAAAGGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 9 0.32
21 8 0.29
22 7 0.25
23 4 0.14
ACGTcount: A:0.81, C:0.04, G:0.13, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAGAAACAAAAACG
Found at i:74729157 original size:107 final size:107
Alignment explanation
Indices: 74728971--74729165 Score: 302
Period size: 107 Copynumber: 1.8 Consensus size: 107
74728961 TTTGAATTCT
74728971 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTACTCTCAACAAATTTCCATCTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTACTCTCAACAAATTTCCATCTT
74729036 ATCCATTGTGATAATCTTTTTCATCTATACATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTATACATCTCGTATCTC
* * ** * *
74729078 AGCAAAATTTGCTGTCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTT-CATTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTACTCTCAAC-AAATTTCCATCT
* *
74729142 TGTCCATTTTGATAATCTTTTTCA
65 TATCCATTGTGATAATCTTTTTCA
74729166 AGCATTTTTC
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
107 73 0.92
108 6 0.08
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.46
Consensus pattern (107 bp):
AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTACTCTCAACAAATTTCCATCTT
ATCCATTGTGATAATCTTTTTCATCTATACATCTCGTATCTC
Found at i:74729675 original size:45 final size:44
Alignment explanation
Indices: 74729626--74729847 Score: 140
Period size: 45 Copynumber: 5.1 Consensus size: 44
74729616 CCATCAGTTG
74729626 CAGTGGAGCTGGTCAAATATAGCAGATCTTGCCTTCCTGCATTAA
1 CAGTGGAGCTGGTCAAA-ATAGCAGATCTTGCCTTCCTGCATTAA
* * * * * * * *
74729671 CAGTGAAGCAGATCGAAA-A-CAAAACCTTGCC-TCCAT-CGGTT-G
1 CAGTGGAGCTGGTCAAAATAGC-AGATCTTGCCTTCC-TGC-ATTAA
* *
74729713 CAGTGGAGCTAGTCAAAGATAGCAGATCTTGTCTTCCTGCATTAA
1 CAGTGGAGCTGGTCAAA-ATAGCAGATCTTGCCTTCCTGCATTAA
* * * * * * *
74729758 CAGCGAAGCAGATCGAAA-A-CAAAATCTTGCC-TCCAT-CGATT-G
1 CAGTGGAGCTGGTCAAAATAGC-AGATCTTGCCTTCC-TGC-ATTAA
74729800 CAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTAA
1 CAGTGGAGCTGGTCAAA-ATAGCAGATCTTGCCTTCCTGCATTAA
74729845 CAG
1 CAG
74729848 CGAAGCAGAT
Statistics
Matches: 125, Mismatches: 34, Indels: 36
0.64 0.17 0.18
Matches are distributed among these distances:
42 34 0.27
43 27 0.22
44 27 0.22
45 37 0.30
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (44 bp):
CAGTGGAGCTGGTCAAAATAGCAGATCTTGCCTTCCTGCATTAA
Found at i:74729749 original size:87 final size:87
Alignment explanation
Indices: 74729608--74730298 Score: 945
Period size: 87 Copynumber: 7.9 Consensus size: 87
74729598 AGAAACAGAT
* * * *
74729608 CCTTACCTCCATCAGTTGCAGTGGAGCTGGTCAAATATAGCAGATCTTGCCTTCCTGCATTAACA
1 CCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
*
74729673 GTGAAGCAGATCGAAAACAAAA
66 GCGAAGCAGATCGAAAACAAAA
* * *
74729695 CCTTGCCTCCATCGGTTGCAGTGGAGCTAGTCAAAGATAGCAGATCTTGTCTTCCTGCATTAACA
1 CCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
74729760 GCGAAGCAGATCGAAAACAAAA
66 GCGAAGCAGATCGAAAACAAAA
* * *
74729782 TCTTGCCTCCATCGATTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
1 CCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
74729847 GCGAAGCAGATCGAAAACAAAA
66 GCGAAGCAGATCGAAAACAAAA
* * * * * *
74729869 CCTTGCCTCCATCGGTTGTAGTGGAGATGGTTGAAGACAACAGATCTTGCCTTCCTGCATTGACA
1 CCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
* * *
74729934 GCGAAGCAGATTGAAGACACAAG
66 GCGAAGCAGATCGAAAACA-AAA
* * * * ** *
74729957 CCTTGCCTCCCTCGTTTGTAGTGGAGCTGGTTGAAGATAATAGATCTTGCCTTCCTGCATTGACA
1 CCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
*
74730022 GCGAAGCAGGTCGAAAACACAAA
66 GCGAAGCAGATCGAAAACA-AAA
* * * * * *
74730045 CGTTGCCTCTC-TCAGTTGTAGTGGAGTTGGTTAAAAATAGCAGATCTTGCCTTCCTACATTAAC
1 CCTTGCCTC-CATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAAC
*
74730109 AGCGAAACAGATCGAAAACAAAA
65 AGCGAAGCAGATCGAAAACAAAA
* * *
74730132 CCTTGCCTTCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCATGCATTAACA
1 CCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
74730197 GCGAAGCAGATCGAAAACAAAA
66 GCGAAGCAGATCGAAAACAAAA
* * * * *
74730219 CCTTGCCTCCATCGATTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGTACTGAC-
1 CCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
74730283 GACGAAGCAGATCGAA
66 G-CGAAGCAGATCGAA
74730299 GAAACTAGTC
Statistics
Matches: 541, Mismatches: 59, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
86 2 0.00
87 387 0.72
88 151 0.28
89 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (87 bp):
CCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
GCGAAGCAGATCGAAAACAAAA
Found at i:74729962 original size:44 final size:45
Alignment explanation
Indices: 74729827--74730030 Score: 122
Period size: 44 Copynumber: 4.6 Consensus size: 45
74729817 GATAGCAGAT
* * *
74729827 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAA-A-AC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATTGAAGACAATAGAC
* * * * * * *
74729870 CTTGCC-TCCAT-CGGTTG-TAGTGGAG-ATGGTTGAAGACAACAGAT
1 CTTGCCTTCC-TGC-ATTGACAGCGAAGCA-GATTGAAGACAATAGAC
74729914 CTTGCCTTCCTGCATTGACAGCGAAGCAGATTGAAGACACA-AG-C
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATTGAAGACA-ATAGAC
* * * * * * * * *
74729958 CTTGCCTCCCT-CGTTTG-TAGTGGAGCTGGTTGAAGATAATAGAT
1 CTTGCCTTCCTGC-ATTGACAGCGAAGCAGATTGAAGACAATAGAC
74730002 CTTGCCTTCCTGCATTGACAGCGAAGCAG
1 CTTGCCTTCCTGCATTGACAGCGAAGCAG
74730031 GTCGAAAACA
Statistics
Matches: 116, Mismatches: 30, Indels: 28
0.67 0.17 0.16
Matches are distributed among these distances:
41 1 0.01
42 19 0.16
43 28 0.24
44 37 0.32
45 29 0.25
46 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (45 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATTGAAGACAATAGAC
Found at i:74730267 original size:350 final size:349
Alignment explanation
Indices: 74729590--74730314 Score: 1008
Period size: 350 Copynumber: 2.1 Consensus size: 349
74729580 CCCCAGAGAA
* * * * * ** * **
74729590 CAGATCAAAGAAACAGATCCTTACCTCCATCAG-TTGCAGTGGAGCTGGTCAAATATAGCAGATC
1 CAGATCGAAGAAACA-AGCCTTGCCTCCCTC-GTTTGTAGTGGAGCTGGTTGAAGATAATAGATC
* *
74729654 TTGCCTTCCTGCATTAACAGTGAAGCAGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTGG
64 TTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAACCTTGCCTCCATCAGTTGCAGTGG
* * * * *
74729719 AGCTAGTCAAAGATAGCAGATCTTGTCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAATC
129 AGCTAGTCAAAAATAGCAGATCTTGCCTTCCTACATTAACAGCGAAACAGATCGAAAACAAAACC
*
74729784 TTGCCTCCATCGATTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGC
194 TTGCCTCCATCGATTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCATGCATTAACAGC
* ** *
74729849 GAAGCAGATCGAAAACAAAACCTTGCCTCCATCGGTTGTAGTGGAGATGGTTGAAGACAACAGAT
259 GAAGCAGATCGAAAACAAAACCTTGCCTCCATCGATTACAGTGGAGATGGTTAAAGACAACAGAT
*
74729914 CTTGCCTTCCTGCATTGAC-AGCGAAG
324 CTTGCCTTCCTGCACTGACGA-CGAAG
* *
74729940 CAGATTGAAGACACAAGCCTTGCCTCCCTCGTTTGTAGTGGAGCTGGTTGAAGATAATAGATCTT
1 CAGATCGAAGAAACAAGCCTTGCCTCCCTCGTTTGTAGTGGAGCTGGTTGAAGATAATAGATCTT
* * * *
74730005 GCCTTCCTGCATTGACAGCGAAGCAGGTCGAAAACACAAACGTTGCCTCTC-TCAGTTGTAGTGG
66 GCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACA-AAACCTTGCCTC-CATCAGTTGCAGTGG
* * *
74730069 AGTTGGTTAAAAATAGCAGATCTTGCCTTCCTACATTAACAGCGAAACAGATCGAAAACAAAACC
129 AGCTAGTCAAAAATAGCAGATCTTGCCTTCCTACATTAACAGCGAAACAGATCGAAAACAAAACC
* *
74730134 TTGCCTTCATC-AGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCATGCATTAACAG
194 TTGCCTCCATCGA-TTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCATGCATTAACAG
* * *
74730198 CGAAGCAGATCGAAAACAAAACCTTGCCTCCATCGATTACAGTGGAGCTGGTTAAAGATAGCAGA
258 CGAAGCAGATCGAAAACAAAACCTTGCCTCCATCGATTACAGTGGAGATGGTTAAAGACAACAGA
*
74730263 TCTTGCCTTCCTGTACTGACGACGAAG
323 TCTTGCCTTCCTGCACTGACGACGAAG
* *
74730290 CAGATCGAAGAAACTAGTCTTGCCT
1 CAGATCGAAGAAACAAGCCTTGCCT
74730315 TCCTGTACTA
Statistics
Matches: 328, Mismatches: 42, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
348 1 0.00
349 73 0.22
350 252 0.77
351 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (349 bp):
CAGATCGAAGAAACAAGCCTTGCCTCCCTCGTTTGTAGTGGAGCTGGTTGAAGATAATAGATCTT
GCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAACCTTGCCTCCATCAGTTGCAGTGGAG
CTAGTCAAAAATAGCAGATCTTGCCTTCCTACATTAACAGCGAAACAGATCGAAAACAAAACCTT
GCCTCCATCGATTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCATGCATTAACAGCGA
AGCAGATCGAAAACAAAACCTTGCCTCCATCGATTACAGTGGAGATGGTTAAAGACAACAGATCT
TGCCTTCCTGCACTGACGACGAAG
Found at i:74730589 original size:44 final size:44
Alignment explanation
Indices: 74730540--74730736 Score: 134
Period size: 44 Copynumber: 4.5 Consensus size: 44
74730530 CCGGTAGTTC
74730540 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* * ** * ** * *
74730584 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* ** * * * *
74730628 TACCTCCCTGAGATTA-CAGT-GAAGTACATTGAAG-TCAGTAGTTC-
1 TATCTCCCT-AG-GCAGCAGTGGAA-TAGATTGAAGATTA-CAGATCT
* * *
74730672 TATCTCCCTGGGCAGCAGTGGAATAGATT-AAAACTACAGATCT
1 TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
* *
74730715 TATCTCCCTAAGCAGTAGTGGA
1 TATCTCCCTAGGCAGCAGTGGA
74730737 GCAGATCGAA
Statistics
Matches: 108, Mismatches: 37, Indels: 17
0.67 0.23 0.10
Matches are distributed among these distances:
42 7 0.06
43 30 0.28
44 57 0.53
45 13 0.12
46 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
TATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCT
Found at i:74730639 original size:132 final size:132
Alignment explanation
Indices: 74730476--74730968 Score: 740
Period size: 132 Copynumber: 3.7 Consensus size: 132
74730466 AATAGATTGA
* * * *
74730476 AGATTGAAGATGACGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCGGTAGTTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAATTCT
* *
74730541 A-TCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
66 ACT-TCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
74730605 AGC
130 AGC
* * *
74730608 AGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGAAGTACATTGAAGTCAGTAGTTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * *
74730673 A-TCTCCCTGGGCAGCAGTGGAATAGATT-AAAACTACAGATCTTATCTCCCTAAGCAGTAGTGG
66 ACT-TCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGG
74730736 AGC
130 AGC
* * * * *
74730739 AGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTCAAGCCAGAAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAATTCT
* * *
74730804 ACTTCCATGGGCAATAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGA
66 ACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
74730869 GC
131 GC
* *
74730871 AGATCGAAGATGGCGGATTTTACCTCTCTGAGATTACAGTAGAGTACATTGAAGCCAGTAATTCT
1 AGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAATTCT
*
74730936 ACTTCCCTGGACAACAGTGGAATAGATTGAAGA
66 ACTTCCCTGGGCAACAGTGGAATAGATTGAAGA
74730969 GCAGAAGAAA
Statistics
Matches: 327, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
131 116 0.35
132 211 0.65
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
AGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCAGTAATTCT
ACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
GC
Found at i:74730956 original size:263 final size:263
Alignment explanation
Indices: 74730476--74730963 Score: 757
Period size: 263 Copynumber: 1.9 Consensus size: 263
74730466 AATAGATTGA
* * * * * *
74730476 AGATTGAAGATGACGGATTTTACCTCCCTGAGATTACAGTGGAGTACATTGAAGCCGGTAGTTCT
1 AGATCGAAGATGACGAATTTTACCTCCCTGAGATTACAGTGGAGTACATTCAAGCCAGAAATTCT
* * *
74730541 ATCTCCCTAGGCAGCAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGA
66 ATCTCCATAGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGA
* *
74730606 GCAGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGAAGTACATTGAAGTCAGTAGTT
131 GCAGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGAAGTACATTGAAGCCAGTAATT
* *
74730671 CTATCTCCCTGGGCAGCAGTGGAATAGATTAAAACTACAGATCTTATCTCCCTAAGCAGTAGTGG
196 CTATCTCCCTGGACAACAGTGGAATAGATTAAAACTACAGATCTTATCTCCCTAAGCAGTAGTGG
74730736 AGC
261 AGC
* * *
74730739 AGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTCAAGCCAGAAATTCT
1 AGATCGAAGATGACGAATTTTACCTCCCTGAGATTACAGTGGAGTACATTCAAGCCAGAAATTCT
* *
74730804 A-CTTCCATGGGCAATAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
66 ATC-TCCATAGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGG
*
74730868 AGCAGATCGAAGATGGCGGATTTTACCTCTCTGAGATTACAGT-AGAGTACATTGAAGCCAGTAA
130 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGA-AGTACATTGAAGCCAGTAA
74730932 TTCTA-CTTCCCTGGACAACAGTGGAATAGATT
194 TTCTATC-TCCCTGGACAACAGTGGAATAGATT
74730964 GAAGAGCAGA
Statistics
Matches: 203, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
262 3 0.01
263 200 0.99
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (263 bp):
AGATCGAAGATGACGAATTTTACCTCCCTGAGATTACAGTGGAGTACATTCAAGCCAGAAATTCT
ATCTCCATAGGCAACAGTGGAATAGATTGAAGATTACAGATCTTATCTCCCTAAGCAATAGTGGA
GCAGATCGAAGATGGCGGATTTTACCTCCCTGAGATTACAGTGAAGTACATTGAAGCCAGTAATT
CTATCTCCCTGGACAACAGTGGAATAGATTAAAACTACAGATCTTATCTCCCTAAGCAGTAGTGG
AGC
Found at i:74732247 original size:459 final size:459
Alignment explanation
Indices: 74731389--74732306 Score: 1836
Period size: 459 Copynumber: 2.0 Consensus size: 459
74731379 ACCCCAGCCG
74731389 CATGTTGTTGCTGCCACCTCCTGCGCACGCCCACCGCCGCTACTCGCCAATCCCCGGCTTCATGT
1 CATGTTGTTGCTGCCACCTCCTGCGCACGCCCACCGCCGCTACTCGCCAATCCCCGGCTTCATGT
74731454 GTCCACGCGTCTGACACCTGCAAAACGAAGCCACACGCAACAGTACAAGGATCCAAAGCACAAAA
66 GTCCACGCGTCTGACACCTGCAAAACGAAGCCACACGCAACAGTACAAGGATCCAAAGCACAAAA
74731519 TGACAAAAATAGAAGTTTAGGGGTTGTAAAAGTTTGCTATATAGGCTGAACAAAAGCATTGTAAT
131 TGACAAAAATAGAAGTTTAGGGGTTGTAAAAGTTTGCTATATAGGCTGAACAAAAGCATTGTAAT
74731584 GTCTTCTTCTGGCAATTTCACAAACTTTAGAAATAAAAAGAAAACTAAGTTTTTTTCTTCTCCAG
196 GTCTTCTTCTGGCAATTTCACAAACTTTAGAAATAAAAAGAAAACTAAGTTTTTTTCTTCTCCAG
74731649 ACCTGTTATTTTATTTTGTTTTACTCTATTTTATATATATATTTTAACGAAAACAAAGTAAAGAA
261 ACCTGTTATTTTATTTTGTTTTACTCTATTTTATATATATATTTTAACGAAAACAAAGTAAAGAA
74731714 AAGGGGCTCACCGGAGACACCTCGCGACCGAGCTGTCGGTGTGTGGTTCTCCGTCATTGGCCCGG
326 AAGGGGCTCACCGGAGACACCTCGCGACCGAGCTGTCGGTGTGTGGTTCTCCGTCATTGGCCCGG
74731779 ATCTGAAAGGGGGGAGCTACGAGCCTCAATCTCGGCGCTCATGGGGGTTCAAAGACCCGGCTTTT
391 ATCTGAAAGGGGGGAGCTACGAGCCTCAATCTCGGCGCTCATGGGGGTTCAAAGACCCGGCTTTT
74731844 CAAA
456 CAAA
74731848 CATGTTGTTGCTGCCACCTCCTGCGCACGCCCACCGCCGCTACTCGCCAATCCCCGGCTTCATGT
1 CATGTTGTTGCTGCCACCTCCTGCGCACGCCCACCGCCGCTACTCGCCAATCCCCGGCTTCATGT
74731913 GTCCACGCGTCTGACACCTGCAAAACGAAGCCACACGCAACAGTACAAGGATCCAAAGCACAAAA
66 GTCCACGCGTCTGACACCTGCAAAACGAAGCCACACGCAACAGTACAAGGATCCAAAGCACAAAA
74731978 TGACAAAAATAGAAGTTTAGGGGTTGTAAAAGTTTGCTATATAGGCTGAACAAAAGCATTGTAAT
131 TGACAAAAATAGAAGTTTAGGGGTTGTAAAAGTTTGCTATATAGGCTGAACAAAAGCATTGTAAT
74732043 GTCTTCTTCTGGCAATTTCACAAACTTTAGAAATAAAAAGAAAACTAAGTTTTTTTCTTCTCCAG
196 GTCTTCTTCTGGCAATTTCACAAACTTTAGAAATAAAAAGAAAACTAAGTTTTTTTCTTCTCCAG
74732108 ACCTGTTATTTTATTTTGTTTTACTCTATTTTATATATATATTTTAACGAAAACAAAGTAAAGAA
261 ACCTGTTATTTTATTTTGTTTTACTCTATTTTATATATATATTTTAACGAAAACAAAGTAAAGAA
74732173 AAGGGGCTCACCGGAGACACCTCGCGACCGAGCTGTCGGTGTGTGGTTCTCCGTCATTGGCCCGG
326 AAGGGGCTCACCGGAGACACCTCGCGACCGAGCTGTCGGTGTGTGGTTCTCCGTCATTGGCCCGG
74732238 ATCTGAAAGGGGGGAGCTACGAGCCTCAATCTCGGCGCTCATGGGGGTTCAAAGACCCGGCTTTT
391 ATCTGAAAGGGGGGAGCTACGAGCCTCAATCTCGGCGCTCATGGGGGTTCAAAGACCCGGCTTTT
74732303 CAAA
456 CAAA
74732307 TCACCCGAAG
Statistics
Matches: 459, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
459 459 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (459 bp):
CATGTTGTTGCTGCCACCTCCTGCGCACGCCCACCGCCGCTACTCGCCAATCCCCGGCTTCATGT
GTCCACGCGTCTGACACCTGCAAAACGAAGCCACACGCAACAGTACAAGGATCCAAAGCACAAAA
TGACAAAAATAGAAGTTTAGGGGTTGTAAAAGTTTGCTATATAGGCTGAACAAAAGCATTGTAAT
GTCTTCTTCTGGCAATTTCACAAACTTTAGAAATAAAAAGAAAACTAAGTTTTTTTCTTCTCCAG
ACCTGTTATTTTATTTTGTTTTACTCTATTTTATATATATATTTTAACGAAAACAAAGTAAAGAA
AAGGGGCTCACCGGAGACACCTCGCGACCGAGCTGTCGGTGTGTGGTTCTCCGTCATTGGCCCGG
ATCTGAAAGGGGGGAGCTACGAGCCTCAATCTCGGCGCTCATGGGGGTTCAAAGACCCGGCTTTT
CAAA
Found at i:74734564 original size:13 final size:13
Alignment explanation
Indices: 74734546--74734589 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
74734536 AAGATTTAGT
74734546 ATTTATTAGTATA
1 ATTTATTAGTATA
*
74734559 ATTTATT--TAGA
1 ATTTATTAGTATA
*
74734570 ATTTATTAGCATA
1 ATTTATTAGTATA
74734583 ATTTATT
1 ATTTATT
74734590 TGACCTACGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 10 0.38
13 16 0.62
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (13 bp):
ATTTATTAGTATA
Found at i:74734567 original size:24 final size:24
Alignment explanation
Indices: 74734539--74734590 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
74734529 TTTTGAGAAG
* *
74734539 ATTTAGTATTTATTAGTATAATTT
1 ATTTAGAATTTATTAGCATAATTT
74734563 ATTTAGAATTTATTAGCATAATTT
1 ATTTAGAATTTATTAGCATAATTT
74734587 ATTT
1 ATTT
74734591 GACCTACGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.56
Consensus pattern (24 bp):
ATTTAGAATTTATTAGCATAATTT
Found at i:74736893 original size:20 final size:21
Alignment explanation
Indices: 74736862--74736904 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
74736852 TATGAATTAT
74736862 GAAATTTAAATATGTGAAATG
1 GAAATTTAAATATGTGAAATG
74736883 GAAATTT-AATATGTGAAATG
1 GAAATTTAAATATGTGAAATG
74736903 GA
1 GA
74736905 TTAGAATGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.33
Consensus pattern (21 bp):
GAAATTTAAATATGTGAAATG
Found at i:74737707 original size:20 final size:21
Alignment explanation
Indices: 74737668--74737708 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
74737658 TGTTTTGACA
74737668 TGTTTTAAGCATGCTTAAATG
1 TGTTTTAAGCATGCTTAAATG
* *
74737689 TGTTTTGAGTATG-TTAAATG
1 TGTTTTAAGCATGCTTAAATG
74737709 GTTGGTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (21 bp):
TGTTTTAAGCATGCTTAAATG
Found at i:74746924 original size:21 final size:20
Alignment explanation
Indices: 74746896--74746939 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 20
74746886 TTAATATAAT
74746896 ATTTATTAAATATTATATTA
1 ATTTATTAAATATTATATTA
74746916 ATTTAATTAAATATTATATTA
1 ATTT-ATTAAATATTATATTA
74746937 ATT
1 ATT
74746940 AAATATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTATTAAATATTATATTA
Found at i:74746946 original size:16 final size:16
Alignment explanation
Indices: 74746876--74746947 Score: 65
Period size: 16 Copynumber: 4.2 Consensus size: 16
74746866 TTAATCACTT
74746876 TTATATTAAATT-AATA
1 TTATATT-AATTAAATA
* *
74746892 TAATATTTATTAAATA
1 TTATATTAATTAAATA
74746908 TTATATTAATTTAATTAAATA
1 -T-TA-T-A-TTAATTAAATA
74746929 TTATATTAATTAAATA
1 TTATATTAATTAAATA
74746945 TTA
1 TTA
74746948 AATCTTTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
15 3 0.07
16 24 0.52
17 2 0.04
18 2 0.04
19 3 0.07
20 2 0.04
21 10 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTATATTAATTAAATA
Found at i:74747035 original size:19 final size:18
Alignment explanation
Indices: 74746989--74747036 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
74746979 CATGATAAAC
*
74746989 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATACTTAAT
74747006 ATTAAGA-TAATCACTTAAT
1 ATTAA-ATTAAT-ACTTAAT
74747025 ATTAAATTAATA
1 ATTAAATTAATA
74747037 AAATACTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 8 0.31
18 3 0.12
19 15 0.58
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
ATTAAATTAATACTTAAT
Found at i:74747073 original size:38 final size:36
Alignment explanation
Indices: 74747026--74747096 Score: 90
Period size: 38 Copynumber: 1.9 Consensus size: 36
74747016 TCACTTAATA
*
74747026 TTAAATTAATA-AAATACTATTAACATAAGTATTAAAG
1 TTAAATTAATATAAA-ACTATTAAAATAA-TATTAAAG
*
74747063 TTAAATTTAATATTAAACTATTAAAATAATATTA
1 TTAAA-TTAATATAAAACTATTAAAATAATATTA
74747097 TTTTTGGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
37 10 0.33
38 18 0.60
39 2 0.07
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (36 bp):
TTAAATTAATATAAAACTATTAAAATAATATTAAAG
Found at i:74756787 original size:14 final size:15
Alignment explanation
Indices: 74756770--74756807 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
74756760 ATGTTTATTA
74756770 AATTAATTTA-AATT
1 AATTAATTTATAATT
74756784 AATTAATTTTATAATT
1 AATTAA-TTTATAATT
74756800 AA-TAATTT
1 AATTAATTT
74756808 TCTAAACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 9 0.41
15 7 0.32
16 6 0.27
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTAATTTATAATT
Found at i:74756801 original size:16 final size:15
Alignment explanation
Indices: 74756770--74756808 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
74756760 ATGTTTATTA
74756770 AATTAA-TTTAAATT
1 AATTAATTTTAAATT
74756784 AATTAATTTTATAATT
1 AATTAATTTTA-AATT
74756800 AA-TAATTTT
1 AATTAATTTT
74756809 CTAAACTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.26
15 11 0.48
16 6 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
AATTAATTTTAAATT
Found at i:74760471 original size:42 final size:41
Alignment explanation
Indices: 74760338--74760471 Score: 96
Period size: 42 Copynumber: 3.2 Consensus size: 41
74760328 GAAAACCCGT
* * * * * * *
74760338 AAGGGTTGAATGGAAGCTCATAGGA-CTGAACGGAAACCTA
1 AAGGGTTAAATTGAAGCTCAAAAGAGCTGAACTGACACTTA
* * *
74760378 TAAGGGTT-AATCTGAAGCTCAGAAGAGCTAAACTGAAACCCATTA
1 -AAGGGTTAAAT-TGAAGCTCAAAAGAGCTGAACTG--ACAC-TTA
74760423 AA--GTTAAATTGAAGCTCAAAAGAGCTGAACTGACACTTA
1 AAGGGTTAAATTGAAGCTCAAAAGAGCTGAACTGACACTTA
74760462 GAAGGGTTAA
1 -AAGGGTTAA
74760472 TCTGAAACCC
Statistics
Matches: 73, Mismatches: 11, Indels: 17
0.72 0.11 0.17
Matches are distributed among these distances:
39 3 0.04
40 8 0.11
41 18 0.25
42 35 0.48
43 3 0.04
44 4 0.05
45 2 0.03
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (41 bp):
AAGGGTTAAATTGAAGCTCAAAAGAGCTGAACTGACACTTA
Found at i:74773487 original size:83 final size:80
Alignment explanation
Indices: 74773336--74773496 Score: 223
Period size: 83 Copynumber: 2.0 Consensus size: 80
74773326 TGCAAGGTGC
** * * * *
74773336 TGGATCTTGACTCTGCTTTTTTTTCTTTCAGTAGAATGATTGTTTTCTGATAATGGACGAATAAT
1 TGGATCTTGACTCTGCTTTGGTTTCTATCAGTACAATCATAGTTTTCTGATAATGGACGAATAAT
74773401 AAAATGAACGGTTGT
66 AAAATGAACGGTTGT
* *
74773416 TGGATCTTGACTCTCCGCTTTGGTTTCTATCAGTACAATCATAGTTTTTGTGATAATTGACGAAT
1 TGGATCTTGACTCT--GCTTTGGTTTCTATCAGTACAATCATAG-TTTTCTGATAATGGACGAAT
74773481 AATAAAATGAACGGTT
63 AATAAAATGAACGGTT
74773497 CCATTTGGCT
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
80 14 0.20
82 22 0.31
83 34 0.49
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.40
Consensus pattern (80 bp):
TGGATCTTGACTCTGCTTTGGTTTCTATCAGTACAATCATAGTTTTCTGATAATGGACGAATAAT
AAAATGAACGGTTGT
Found at i:74782344 original size:24 final size:24
Alignment explanation
Indices: 74782312--74782379 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
74782302 ACTGCAATAA
*
74782312 TGAGTGGCTTGACCATAACGTTAT
1 TGAGTGGCTTGACCACAACGTTAT
* *
74782336 TGAGTGGCTTGATCACAACCTTAT
1 TGAGTGGCTTGACCACAACGTTAT
74782360 TGAGTGGCTTGACCACAACG
1 TGAGTGGCTTGACCACAACG
74782380 ATGCAGCTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (24 bp):
TGAGTGGCTTGACCACAACGTTAT
Found at i:74785454 original size:16 final size:16
Alignment explanation
Indices: 74785410--74785456 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 16
74785400 ATAGATTTAA
74785410 TATTAAATTTAATATTT
1 TATT-AATTTAATATTT
*
74785427 T-TCTTA-TTAATATTT
1 TAT-TAATTTAATATTT
74785442 TATTAATTTAATATT
1 TATTAATTTAATATT
74785457 AAAGTGATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
15 12 0.48
16 11 0.44
17 2 0.08
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTAATTTAATATTT
Found at i:74785607 original size:57 final size:59
Alignment explanation
Indices: 74785481--74785609 Score: 133
Period size: 57 Copynumber: 2.2 Consensus size: 59
74785471 AATATTTAAT
* * * *
74785481 TTAATTTAATTTAATATTTTTCTTATAGATAAATATTCTATTAATTTAATAGATTTAATA
1 TTAATTTAATCTAATATTTTTCTTATAGATAAATATTATATTAATTTAATA-ATTAAAGA
*
74785541 TGAAATTTAATCTAATATTTTTC-T-T-GAT-AATATTATATTAATTTAAT-ATTAAAGCGA
1 T-TAATTTAATCTAATATTTTTCTTATAGATAAATATTATATTAATTTAATAATTAAA--GA
74785598 TTAAGTTTAATC
1 TTAA-TTTAATC
74785610 ATAGTTGAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
55 5 0.08
56 2 0.03
57 27 0.46
58 3 0.05
59 1 0.02
60 2 0.03
61 19 0.32
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (59 bp):
TTAATTTAATCTAATATTTTTCTTATAGATAAATATTATATTAATTTAATAATTAAAGA
Found at i:74786574 original size:19 final size:20
Alignment explanation
Indices: 74786538--74786579 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
74786528 TAAAATACCA
* *
74786538 AAAAAACCAAAGATCAAAGC
1 AAAAAACCAAAGAACAAACC
*
74786558 AAAAACCCAAA-AACAAACC
1 AAAAAACCAAAGAACAAACC
74786577 AAA
1 AAA
74786580 TCTGAAAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.69, C:0.24, G:0.05, T:0.02
Consensus pattern (20 bp):
AAAAAACCAAAGAACAAACC
Found at i:74788418 original size:45 final size:45
Alignment explanation
Indices: 74788368--74788458 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
74788358 TTGAAATAAA
74788368 TTATTTTCTCATTTTATTAAAAATTTAAAGATTCAAATTTTATTT
1 TTATTTTCTCATTTTATTAAAAATTTAAAGATTCAAATTTTATTT
*
74788413 TTATTTTCTCATTTTATTAAAAATTTAAATATTCAAATTTTATTT
1 TTATTTTCTCATTTTATTAAAAATTTAAAGATTCAAATTTTATTT
74788458 T
1 T
74788459 AACTTTTATC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (45 bp):
TTATTTTCTCATTTTATTAAAAATTTAAAGATTCAAATTTTATTT
Found at i:74790246 original size:20 final size:21
Alignment explanation
Indices: 74790223--74790261 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74790213 TATTTTATAT
*
74790223 ATAAAAA-TTGTATTTATTCA
1 ATAAAAACTTGAATTTATTCA
74790243 ATAAAAACTTGAATTTATT
1 ATAAAAACTTGAATTTATT
74790262 AATGATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (21 bp):
ATAAAAACTTGAATTTATTCA
Found at i:74790673 original size:51 final size:51
Alignment explanation
Indices: 74790594--74790697 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 51
74790584 GTGTATAGCT
*
74790594 CATTATCATATAGTTCACCTGCACGGTTCGCCTATGCACTTCGCCGCCATG
1 CATTATCATATAGTTCACCTGCACGGTTCGCCTATGCACTTCGCCACCATG
* * *
74790645 CATTATCATATTGTTCGCCTGCATGGTTCGCCTATGCACTTCGCCACCATG
1 CATTATCATATAGTTCACCTGCACGGTTCGCCTATGCACTTCGCCACCATG
74790696 CA
1 CA
74790698 GGTGAACTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.19, C:0.33, G:0.17, T:0.31
Consensus pattern (51 bp):
CATTATCATATAGTTCACCTGCACGGTTCGCCTATGCACTTCGCCACCATG
Found at i:74791480 original size:20 final size:20
Alignment explanation
Indices: 74791457--74791508 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
74791447 AATAAAGTGC
*
74791457 AAATGATTTTAACCAAGTCA
1 AAATCATTTTAACCAAGTCA
* * * * *
74791477 AAATTATTTCAATCATGTTA
1 AAATCATTTTAACCAAGTCA
74791497 AAATCATTTTAA
1 AAATCATTTTAA
74791509 ATGTTTTTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (20 bp):
AAATCATTTTAACCAAGTCA
Found at i:74798263 original size:15 final size:15
Alignment explanation
Indices: 74798245--74798276 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
74798235 TTTAAATCTA
*
74798245 TTAGTTTTATTTAAT
1 TTAGTTTAATTTAAT
74798260 TTAGTTTAATTTAAT
1 TTAGTTTAATTTAAT
74798275 TT
1 TT
74798277 CTACAGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (15 bp):
TTAGTTTAATTTAAT
Found at i:74798401 original size:27 final size:27
Alignment explanation
Indices: 74798361--74798421 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
74798351 TAAAAACGGG
* *
74798361 AATGATCCTGGTCTCAACGATAATCTA
1 AATGGTCCTAGTCTCAACGATAATCTA
*
74798388 AATGGTCCTAGTCTCAATGATAATCTA
1 AATGGTCCTAGTCTCAACGATAATCTA
74798415 AATGGTC
1 AATGGTC
74798422 AGGATGTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (27 bp):
AATGGTCCTAGTCTCAACGATAATCTA
Found at i:74816549 original size:15 final size:17
Alignment explanation
Indices: 74816531--74816562 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
74816521 CAATGACAAT
74816531 ACCAG-CAA-TTGCTCC
1 ACCAGACAACTTGCTCC
74816546 ACCAGACAACTTGCTCC
1 ACCAGACAACTTGCTCC
74816563 CACTACTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.33
16 3 0.20
17 7 0.47
ACGTcount: A:0.28, C:0.41, G:0.12, T:0.19
Consensus pattern (17 bp):
ACCAGACAACTTGCTCC
Found at i:74817950 original size:22 final size:21
Alignment explanation
Indices: 74817924--74817964 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
74817914 AATTTAAAAA
74817924 TTCAAAAAATTATAAAATTATT
1 TTCAAAAAATTA-AAAATTATT
**
74817946 TTCAAACTATTAAAAATTA
1 TTCAAAAAATTAAAAATTA
74817965 CTAAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (21 bp):
TTCAAAAAATTAAAAATTATT
Found at i:74817991 original size:30 final size:29
Alignment explanation
Indices: 74817927--74817999 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
74817917 TTAAAAATTC
*
74817927 AAAAAATTATAAAATTATTTTCAAACTAT
1 AAAAAATTATAAAATTATTTTAAAACTAT
* *
74817956 TAAAAATTACTAAAATTA-TTTAAAAGTAT
1 AAAAAATTA-TAAAATTATTTTAAAACTAT
*
74817985 AAAAAAACTATAAAA
1 -AAAAAATTATAAAA
74818000 AATATTTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 22 0.59
30 15 0.41
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.33
Consensus pattern (29 bp):
AAAAAATTATAAAATTATTTTAAAACTAT
Found at i:74818242 original size:27 final size:26
Alignment explanation
Indices: 74818211--74818268 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
74818201 AATGTATCAT
74818211 AAAATA-AAAAATATCATGAATATGATA
1 AAAATACAAAAATATCAT-AATAT-ATA
* * *
74818238 CAAATACATAAATATTATAATATATA
1 AAAATACAAAAATATCATAATATATA
74818264 AAAAT
1 AAAAT
74818269 TATTATAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 7 0.27
27 10 0.38
28 9 0.35
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.29
Consensus pattern (26 bp):
AAAATACAAAAATATCATAATATATA
Found at i:74819542 original size:23 final size:23
Alignment explanation
Indices: 74819493--74819543 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
74819483 AATATTTGTT
* *
74819493 TTTAATTTTTATATTTTTTTAAT
1 TTTAATTTTTATATTTTTTAAAA
*
74819516 TTTAGTTTTTATATTTTTTAAAA
1 TTTAATTTTTATATTTTTTAAAA
74819539 TTTAA
1 TTTAA
74819544 AATTTCAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (23 bp):
TTTAATTTTTATATTTTTTAAAA
Found at i:74820628 original size:20 final size:20
Alignment explanation
Indices: 74820600--74820644 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
74820590 TTATATGTAC
*
74820600 ATTAAT-AAATAATTTAAAAA
1 ATTAATAAAAT-ATTCAAAAA
*
74820620 ATTATTAAAATATTCAAAAA
1 ATTAATAAAATATTCAAAAA
74820640 ATTAA
1 ATTAA
74820645 AAATTTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
ATTAATAAAATATTCAAAAA
Found at i:74820661 original size:27 final size:27
Alignment explanation
Indices: 74820616--74820667 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
74820606 AAATAATTTA
74820616 AAAAATTATTAAAATATTCAAAAAATT
1 AAAAATTATTAAAATATTCAAAAAATT
*
74820643 AAAAATT-TTATAATAATTCAAAAAA
1 AAAAATTATTAAAAT-ATTCAAAAAA
74820668 GTTAGCATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (27 bp):
AAAAATTATTAAAATATTCAAAAAATT
Found at i:74821433 original size:31 final size:32
Alignment explanation
Indices: 74821379--74821454 Score: 118
Period size: 31 Copynumber: 2.4 Consensus size: 32
74821369 CTTAGCAGCC
*
74821379 CAGTGACTTAAATAATTTTTTTTTGAATAGTT
1 CAGTGACTTAAATAATTTTTTTTTGAATAGCT
*
74821411 TAGTGACTTAAATAA-TTTTTTTTGAATAGCT
1 CAGTGACTTAAATAATTTTTTTTTGAATAGCT
*
74821442 CAGTGATTTAAAT
1 CAGTGACTTAAAT
74821455 GAAAACTTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 26 0.65
32 14 0.35
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (32 bp):
CAGTGACTTAAATAATTTTTTTTTGAATAGCT
Found at i:74821645 original size:31 final size:29
Alignment explanation
Indices: 74821607--74821674 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 29
74821597 ATCTCAAAAC
*
74821607 TATACATGAACTATGGTTTAATGTGCAATTT
1 TATACATGAACTATGATTT--TGTGCAATTT
* *
74821638 TATACATG--CTTTGATTTTGTGTAATTT
1 TATACATGAACTATGATTTTGTGCAATTT
74821665 TATACATGAA
1 TATACATGAA
74821675 ATTTTTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
27 17 0.53
29 7 0.22
31 8 0.25
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.46
Consensus pattern (29 bp):
TATACATGAACTATGATTTTGTGCAATTT
Found at i:74827556 original size:68 final size:69
Alignment explanation
Indices: 74827413--74827572 Score: 202
Period size: 68 Copynumber: 2.3 Consensus size: 69
74827403 TTTTTCCAAC
* *
74827413 ATATAACTTTTTGTATGTC-ATAGAGGCTTGTCACTTTGTGTATGTGTAAATGGATGTGGTGGTG
1 ATATAACTTTTTGTATG-CAATTGAGGCTTGTCACTTTGTGTATGTGTAAACGGATGTGGTGGTG
74827477 AACTA
65 AACTA
* *
74827482 ATATAACCTTTTGTATGCAATTGTAGG-TTGTCACTTT-TGTATGTTTAAAC-GAGTGTGGTGGT
1 ATATAACTTTTTGTATGCAATTG-AGGCTTGTCACTTTGTGTATGTGTAAACGGA-TGTGGTGGT
* *
74827544 GGAGTA
64 GAACTA
*
74827550 ATATAACTTTTTGTATGTAATTG
1 ATATAACTTTTTGTATGCAATTG
74827573 CAGGATGATA
Statistics
Matches: 80, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
67 2 0.03
68 46 0.57
69 29 0.36
70 3 0.04
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.42
Consensus pattern (69 bp):
ATATAACTTTTTGTATGCAATTGAGGCTTGTCACTTTGTGTATGTGTAAACGGATGTGGTGGTGA
ACTA
Found at i:74828094 original size:20 final size:20
Alignment explanation
Indices: 74828041--74828235 Score: 124
Period size: 20 Copynumber: 9.7 Consensus size: 20
74828031 TTTTGAGTCA
74828041 AGTGAAATTTTTTTAAATCG
1 AGTGAAATTTTTTTAAATCG
* *** *
74828061 AGTAAAACCGTTTTAAATTG
1 AGTGAAATTTTTTTAAATCG
* * *
74828081 AGTGAAATTTTTTTGACTCA
1 AGTGAAATTTTTTTAAATCG
****
74828101 AGTGAAAAACAATTTAAATCG
1 AGTG-AAATTTTTTTAAATCG
*** *
74828122 AGTGAAACGATTTTAAATCA
1 AGTGAAATTTTTTTAAATCG
74828142 AGTGAAATTTTTTTAAATCG
1 AGTGAAATTTTTTTAAATCG
***
74828162 AGTGAAACAATTTTAAATC-
1 AGTGAAATTTTTTTAAATCG
* **
74828181 AGGTGAAATTTTTTTTACCCG
1 A-GTGAAATTTTTTTAAATCG
***
74828202 AGTGAAAAAAATTTTAAATCG
1 AGTG-AAATTTTTTTAAATCG
74828223 AGTG-AATTTTTTT
1 AGTGAAATTTTTTT
74828236 TGACTCAAGT
Statistics
Matches: 125, Mismatches: 46, Indels: 9
0.69 0.26 0.05
Matches are distributed among these distances:
19 7 0.06
20 90 0.72
21 28 0.22
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (20 bp):
AGTGAAATTTTTTTAAATCG
Found at i:74828136 original size:61 final size:60
Alignment explanation
Indices: 74828051--74828188 Score: 165
Period size: 61 Copynumber: 2.3 Consensus size: 60
74828041 AGTGAAATTT
* ** * *
74828051 TTTTAAATCGAGTAAAACCGTTTTAAATTGAGTGAAATTTTTTTGACTCAAGTGAAAAACAA
1 TTTTAAATCGAGTGAAACCGTTTTAAATCAAGTGAAATTTTTTTAAATCAAGTG--AAACAA
*
74828113 -TTTAAATCGAGTGAAA-CGATTTTAAATCAAGTGAAATTTTTTTAAATCGAGTGAAACAA
1 TTTTAAATCGAGTGAAACCG-TTTTAAATCAAGTGAAATTTTTTTAAATCAAGTGAAACAA
74828172 TTTTAAATC-AGGTGAAA
1 TTTTAAATCGA-GTGAAA
74828189 TTTTTTTTAC
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
59 7 0.10
60 16 0.24
61 44 0.66
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (60 bp):
TTTTAAATCGAGTGAAACCGTTTTAAATCAAGTGAAATTTTTTTAAATCAAGTGAAACAA
Found at i:74828154 original size:101 final size:101
Alignment explanation
Indices: 74828038--74828228 Score: 287
Period size: 101 Copynumber: 1.9 Consensus size: 101
74828028 CAATTTTGAG
** * *
74828038 TCAAGTGAAATTTTTTTAAATCGAGTAAAACCGTTTTAAAT-TGAGTGAAATTTTTTTGACTCAA
1 TCAAGTGAAATTTTTTTAAATCGAGTAAAACAATTTTAAATCAG-GTGAAATTTTTTTGACCCAA
74828102 GTGAAAAACAA-TTTAAATCGAGTGAAACGATTTTAAA
65 GTGAAAAA-AATTTTAAATCGAGTGAAACGATTTTAAA
* * *
74828139 TCAAGTGAAATTTTTTTAAATCGAGTGAAACAATTTTAAATCAGGTGAAATTTTTTTTACCCGAG
1 TCAAGTGAAATTTTTTTAAATCGAGTAAAACAATTTTAAATCAGGTGAAATTTTTTTGACCCAAG
74828204 TGAAAAAAATTTTAAATCGAGTGAA
66 TGAAAAAAATTTTAAATCGAGTGAA
74828229 TTTTTTTTGA
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
100 2 0.02
101 78 0.96
102 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (101 bp):
TCAAGTGAAATTTTTTTAAATCGAGTAAAACAATTTTAAATCAGGTGAAATTTTTTTGACCCAAG
TGAAAAAAATTTTAAATCGAGTGAAACGATTTTAAA
Found at i:74828168 original size:40 final size:40
Alignment explanation
Indices: 74828113--74828236 Score: 167
Period size: 40 Copynumber: 3.1 Consensus size: 40
74828103 TGAAAAACAA
*
74828113 TTTAAATCGAGTGAAACGATTTTAAATCAAGTGAAATTTT
1 TTTAAATCGAGTGAAACAATTTTAAATCAAGTGAAATTTT
*
74828153 TTTAAATCGAGTGAAACAATTTTAAATCAGGTGAAATTTT
1 TTTAAATCGAGTGAAACAATTTTAAATCAAGTGAAATTTT
* ** * * *
74828193 TTTTACCCGAGTGAAAAAAATTTTAAATCGAGTGAATTTTT
1 TTTAAATCGAGTG-AAACAATTTTAAATCAAGTGAAATTTT
74828234 TTT
1 TTT
74828237 GACTCAAGTG
Statistics
Matches: 74, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 48 0.65
41 26 0.35
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.40
Consensus pattern (40 bp):
TTTAAATCGAGTGAAACAATTTTAAATCAAGTGAAATTTT
Found at i:74828215 original size:41 final size:41
Alignment explanation
Indices: 74828131--74828251 Score: 149
Period size: 40 Copynumber: 3.0 Consensus size: 41
74828121 GAGTGAAACG
* * * *
74828131 ATTTTAAATCAAGTGAAATTTTTTTAAATCGAGTG-AAACA
1 ATTTTAAATCAGGTGAAATTTTTTTTACTCGAGTGAAAAAA
*
74828171 ATTTTAAATCAGGTGAAATTTTTTTTACCCGAGTGAAAAAA
1 ATTTTAAATCAGGTGAAATTTTTTTTACTCGAGTGAAAAAA
*
74828212 ATTTTAAATC-GAGTG-AATTTTTTTTGACTCAAGTGAAAAA
1 ATTTTAAATCAG-GTGAAATTTTTTTT-ACTCGAGTGAAAAA
74828252 CTACTCCCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
40 42 0.59
41 29 0.41
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (41 bp):
ATTTTAAATCAGGTGAAATTTTTTTTACTCGAGTGAAAAAA
Found at i:74828467 original size:112 final size:112
Alignment explanation
Indices: 74828289--74828533 Score: 296
Period size: 112 Copynumber: 2.2 Consensus size: 112
74828279 TTATAAAAGC
** * *
74828289 ATCGATACCAAAATGCCATTCTGACTTCAAAGGAATTTGATCAAACAAATTTTTATCGATAGTTT
1 ATCGATACCAAAATAACATTCTGACTTCAAAGGAATTTGAGCAAACAAATTTTTATCGATACTTT
* *
74828354 GCAAAAAGTATCGATACCTCA-AGAAAAATCATCGATACCTTTTTCAGT
66 GCAAAAAGTATCAATA-CTCACA-AAAAATCATCGATACATTTTTCAGT
* * * **
74828402 ATCGATACCAAAATAAC-TTGTGACTTCGAAGGAATTTGAGCAAGCATGTTTTTATCGATACTTT
1 ATCGATACCAAAATAACATTCTGACTTCAAAGGAATTTGAGCAAACAAATTTTTATCGATACTTT
* * * *
74828466 GCAAAAAGTATCAATACTTACAAAATATTATCGATACATTTTTCGGT
66 GCAAAAAGTATCAATACTCACAAAAAATCATCGATACATTTTTCAGT
** *
74828513 ATCGATATTAAAATGACATTC
1 ATCGATACCAAAATAACATTC
74828534 AACGTAAAAT
Statistics
Matches: 111, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
111 38 0.34
112 58 0.52
113 15 0.14
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.33
Consensus pattern (112 bp):
ATCGATACCAAAATAACATTCTGACTTCAAAGGAATTTGAGCAAACAAATTTTTATCGATACTTT
GCAAAAAGTATCAATACTCACAAAAAATCATCGATACATTTTTCAGT
Found at i:74828788 original size:26 final size:25
Alignment explanation
Indices: 74828740--74828788 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
74828730 AAATATAAAA
* *
74828740 ATAAAATCTTTTTATATAATTTAAT
1 ATAAAATATTTTTAAATAATTTAAT
*
74828765 ATAAAATATTGTTTAAATATTTTA
1 ATAAAATATT-TTTAAATAATTTA
74828789 TGTTAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 9 0.45
26 11 0.55
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
ATAAAATATTTTTAAATAATTTAAT
Found at i:74828808 original size:21 final size:21
Alignment explanation
Indices: 74828784--74828839 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
74828774 TGTTTAAATA
74828784 TTTTATGTTAAATTATTATTC
1 TTTTATGTTAAATTATTATTC
*
74828805 -TTT-TGATAGAATATATTATTC
1 TTTTATGTTA-AAT-TATTATTC
* *
74828826 TTTAATATTAAATT
1 TTTTATGTTAAATT
74828840 GGTGTAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
19 4 0.15
20 6 0.22
21 9 0.33
22 5 0.19
23 3 0.11
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (21 bp):
TTTTATGTTAAATTATTATTC
Found at i:74837027 original size:43 final size:43
Alignment explanation
Indices: 74836960--74837077 Score: 170
Period size: 43 Copynumber: 2.7 Consensus size: 43
74836950 CTCGAACAAC
* *
74836960 GCCAACGTCCCAAACGTGGTCTTACATG-TAATCACAAATCGAT
1 GCCAACGTCCCAAACGTGGTCTTACACGAAAAT-ACAAATCGAT
74837003 GCC-ACTGTCCCAAACAG-GGTCTTACACGAAAATACAAATCGAT
1 GCCAAC-GTCCCAAAC-GTGGTCTTACACGAAAATACAAATCGAT
74837046 GCCAACGTCCCAAACGTGGTCTTACACGAAAA
1 GCCAACGTCCCAAACGTGGTCTTACACGAAAA
74837078 CACTTATAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 10
0.85 0.03 0.12
Matches are distributed among these distances:
42 3 0.04
43 59 0.87
44 6 0.09
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (43 bp):
GCCAACGTCCCAAACGTGGTCTTACACGAAAATACAAATCGAT
Done.