Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 242 of 313
Found at i:74839959 original size:20 final size:20
Alignment explanation
Indices: 74839928--74839977 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 20
74839918 ACTTCCCCAT
74839928 CTTTTCTATTTTTT-TGTTTT-
1 CTTTTCT-TTTTTTCT-TTTTC
74839948 C-TTTCTTTTTTTCTTTTTC
1 CTTTTCTTTTTTTCTTTTTC
74839967 CTTTTCTTTTT
1 CTTTTCTTTTT
74839978 GTTAATTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 10 0.37
19 7 0.26
20 10 0.37
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (20 bp):
CTTTTCTTTTTTTCTTTTTC
Found at i:74841223 original size:33 final size:32
Alignment explanation
Indices: 74841131--74841224 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 32
74841121 TTCTAGTCTG
*
74841131 ATATGACATTCTGTTCTGATATATGTTTCTGAAA
1 ATATGACATT-TGATCTGATATATG-TTCTGAAA
* ** *
74841165 ATATGATATTTCGATCCAAAATATGTTCTGAAA
1 ATATGACATTT-GATCTGATATATGTTCTGAAA
*
74841198 ATATGACATTATGATCTGATGTATGTT
1 ATATGACATT-TGATCTGATATATGTT
74841225 TCTGGTAATA
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
33 29 0.60
34 19 0.40
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (32 bp):
ATATGACATTTGATCTGATATATGTTCTGAAA
Found at i:74844149 original size:132 final size:132
Alignment explanation
Indices: 74843912--74844157 Score: 438
Period size: 132 Copynumber: 1.9 Consensus size: 132
74843902 AGTAAAAAAA
* * *
74843912 GGCTTAATTGACTTACCAATCAAAGCTTTAAGCTTCAAAATCCTAGTTTTCCCTTTTCTTTTTCT
1 GGCTTAATTGACTTACCAATCAAAGCTTTAAGCTTCAAAACCCCAATTTTCCCTTTTCTTTTTCT
* * *
74843977 TTTCTTCTTTCCTTTCCCTTGTTTCGAATTGCTCTCTGTTTCTTTTCTTCTTTGTTTTGTTTCAA
66 TTTCTTCTTTCATTTCCCCTGTTTCGAATTGCTCTCTGTTTCCTTTCTTCTTTGTTTTGTTTCAA
74844042 AG
131 AG
74844044 GGCTTAATTGACTTACCAATCAAAGCTTTAAGCTTCAAAACCCCAATTTTCCCTTTTCTTTTTCT
1 GGCTTAATTGACTTACCAATCAAAGCTTTAAGCTTCAAAACCCCAATTTTCCCTTTTCTTTTTCT
74844109 TTTCTTCTTTCATTTCCCCTGTTTCGAATTGCTCTCTGTTTCCTTTCTT
66 TTTCTTCTTTCATTTCCCCTGTTTCGAATTGCTCTCTGTTTCCTTTCTT
74844158 TTCTTTTGTT
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 108 1.00
ACGTcount: A:0.17, C:0.25, G:0.09, T:0.50
Consensus pattern (132 bp):
GGCTTAATTGACTTACCAATCAAAGCTTTAAGCTTCAAAACCCCAATTTTCCCTTTTCTTTTTCT
TTTCTTCTTTCATTTCCCCTGTTTCGAATTGCTCTCTGTTTCCTTTCTTCTTTGTTTTGTTTCAA
AG
Found at i:74844225 original size:19 final size:19
Alignment explanation
Indices: 74844190--74844244 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
74844180 CTTTACTTTA
* *
74844190 TATT-ATAATAATATAATT
1 TATTAATAATCATTTAATT
74844208 TATTAATAATCATTTAATT
1 TATTAATAATCATTTAATT
* * *
74844227 AATAAAT-ATCTTTTAATT
1 TATTAATAATCATTTAATT
74844245 ATAACACAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 14 0.45
19 17 0.55
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTAATAATCATTTAATT
Found at i:74847906 original size:3 final size:3
Alignment explanation
Indices: 74847898--74847939 Score: 57
Period size: 3 Copynumber: 13.0 Consensus size: 3
74847888 ATGTCTTTAC
74847898 TCT TCT TCT TCT TCT TCT TCT TCT TCT TGACT CTCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T--CT -TCT TCT TCT
74847940 GTAACCTTCC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
3 31 0.86
4 2 0.06
5 2 0.06
6 1 0.03
ACGTcount: A:0.02, C:0.33, G:0.02, T:0.62
Consensus pattern (3 bp):
TCT
Found at i:74849288 original size:20 final size:18
Alignment explanation
Indices: 74849250--74849283 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
74849240 ATTTTTTCTC
*
74849250 TTCTCCTCCTTTTTCTTT
1 TTCTCCTCCTTCTTCTTT
74849268 TTCTCCT-CTTCTTCTT
1 TTCTCCTCCTTCTTCTT
74849284 CTTTTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (18 bp):
TTCTCCTCCTTCTTCTTT
Found at i:74849303 original size:23 final size:24
Alignment explanation
Indices: 74849241--74849303 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 24
74849231 GGCATCTCTA
*
74849241 TTTTTTCTCTTCTCCTCCTTTTTC
1 TTTTTTCTCTTCTTCTCCTTTTTC
*
74849265 TTTTTCTCCTCTTCTTCTTC-TTTTC
1 TTTTT-T-CTCTTCTTCTCCTTTTTC
74849290 TTTTTTCTCTTCTT
1 TTTTTTCTCTTCTT
74849304 AAACCTTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 8 0.23
24 6 0.17
25 11 0.31
26 10 0.29
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTTTCTCTTCTTCTCCTTTTTC
Found at i:74853210 original size:21 final size:21
Alignment explanation
Indices: 74853142--74853211 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
74853132 TTTCAACTTT
*
74853142 TTTATAGTATTATACATTATA
1 TTTATAGTATTATATATTATA
* *
74853163 --AAGTAG-ATTATATATTATT
1 TTTA-TAGTATTATATATTATA
74853182 TTTATAGTATTATATATTATGA
1 TTTATAGTATTATATATTAT-A
74853204 TTT-TAGTA
1 TTTATAGTA
74853212 AATTCATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
19 12 0.31
20 6 0.15
21 18 0.46
22 3 0.08
ACGTcount: A:0.37, C:0.01, G:0.09, T:0.53
Consensus pattern (21 bp):
TTTATAGTATTATATATTATA
Found at i:74853253 original size:17 final size:18
Alignment explanation
Indices: 74853228--74853273 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
74853218 TATAAGAATA
*
74853228 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
74853245 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
74853263 ATTAAATTATA
1 ATTAAATTATA
74853274 TTTAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:74853313 original size:59 final size:59
Alignment explanation
Indices: 74853240--74853527 Score: 234
Period size: 59 Copynumber: 4.8 Consensus size: 59
74853230 TATATTAAGA
74853240 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAGATTAT
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAGATTAT
* * * * * *
74853299 ATTTTA-TAGTATTATATATTATGATTTTAGTAAATT-CATTTAAGAA-TATTTAATATTA-A-G
1 ATTTTATTA--AAT-TATA-TAT--TTTTATTAAATTATATTTAATAATTA-TT-ATTTTAGATT
74853359 A-
58 AT
74853360 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAGATTAT
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAGATTAT
* * * ** * * * * * * *
74853419 ATTTTA-TAGTATTATATATTATGATTTTATTAAATTCATATAA-GAATATTTAATATTAAGA
1 ATTTTATTA-AATTATATATTTTTATTAAATTATATTTA-ATAATTATTATTTTAGATT-A-T
*
74853480 ATTTTATTAAATTATATA-TTTTATTAAATTATATTTAATAATAATTAT
1 ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTAT
74853528 GTTAAAATAT
Statistics
Matches: 176, Mismatches: 33, Indels: 39
0.71 0.13 0.16
Matches are distributed among these distances:
56 16 0.09
57 11 0.06
58 10 0.06
59 52 0.30
60 26 0.15
61 24 0.14
62 10 0.06
63 11 0.06
64 16 0.09
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.55
Consensus pattern (59 bp):
ATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAGATTAT
Found at i:74853390 original size:120 final size:120
Alignment explanation
Indices: 74853176--74853527 Score: 647
Period size: 120 Copynumber: 3.0 Consensus size: 120
74853166 TAGATTATAT
*
74853176 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATT-ATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
74853239 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAG
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAG
*
74853294 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATTTAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
74853359 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAG
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAG
*
74853414 ATTATATTTTATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
*
74853479 AATTTTATTAAATTATATA-TTTTATTAAATTATATTTAATAATAATTAT
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTAT
74853528 GTTAAAATAT
Statistics
Matches: 227, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
118 5 0.02
119 77 0.34
120 145 0.64
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.53
Consensus pattern (120 bp):
ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAG
Found at i:74853496 original size:22 final size:18
Alignment explanation
Indices: 74853480--74853514 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
74853470 AATATTAAGA
74853480 ATTTTATTAAATTATA-T
1 ATTTTATTAAATTATATT
74853497 ATTTTATTAAATTATATT
1 ATTTTATTAAATTATATT
74853515 TAATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 16 0.94
18 1 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTATTAAATTATATT
Found at i:74853543 original size:54 final size:55
Alignment explanation
Indices: 74853442--74853553 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 55
74853432 ATATATTATG
* * *
74853442 ATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATAT
1 ATTTTATTAAATTCATATAAGAATAATTAATATTAAGAATATGATTAAATTATAT
* * *
74853497 ATTTTATTAAATT-ATATTTAATAATAATT-ATGTTAA-AATATGATTAAATTATTT
1 ATTTTATTAAATTCATA--TAAGAATAATTAATATTAAGAATATGATTAAATTATAT
74853551 ATT
1 ATT
74853554 ATTTATATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 21 0.43
55 19 0.39
56 9 0.18
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.51
Consensus pattern (55 bp):
ATTTTATTAAATTCATATAAGAATAATTAATATTAAGAATATGATTAAATTATAT
Found at i:74860395 original size:17 final size:17
Alignment explanation
Indices: 74860375--74860409 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
74860365 ATAAGAATTC
74860375 AAAAAAG-AGAAGAAAAG
1 AAAAAAGCAG-AGAAAAG
74860392 AAAAAAGCAGAGAAAAG
1 AAAAAAGCAGAGAAAAG
74860409 A
1 A
74860410 TGGAGATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.74, C:0.03, G:0.23, T:0.00
Consensus pattern (17 bp):
AAAAAAGCAGAGAAAAG
Found at i:74865706 original size:26 final size:27
Alignment explanation
Indices: 74865633--74865693 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
74865623 ATATTTTCTG
*
74865633 AAAATTTTACCAGAGG--CAAATTAGTC
1 AAAATTTTACCAG-GGATAAAATTAGTC
74865659 AAAATTTTACCAGGGATAAAATTA-TC
1 AAAATTTTACCAGGGATAAAATTAGTC
74865685 AAAATTTTA
1 AAAATTTTA
74865694 TTGGGGATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.06
26 24 0.75
27 6 0.19
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (27 bp):
AAAATTTTACCAGGGATAAAATTAGTC
Found at i:74872966 original size:9 final size:9
Alignment explanation
Indices: 74872942--74872978 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
74872932 TGAGTTTTCG
*
74872942 AATTCAAAT
1 AATTCGAAT
*
74872951 AACTCGAAT
1 AATTCGAAT
74872960 AATTCGAAT
1 AATTCGAAT
74872969 AATTCGAAT
1 AATTCGAAT
74872978 A
1 A
74872979 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:74873824 original size:19 final size:19
Alignment explanation
Indices: 74873800--74873836 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74873790 AGTTAATAAA
74873800 AAATTTGATTAAGATGGGC
1 AAATTTGATTAAGATGGGC
* *
74873819 AAATTTTATTACGATGGG
1 AAATTTGATTAAGATGGG
74873837 TGGCAGTGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (19 bp):
AAATTTGATTAAGATGGGC
Found at i:74877104 original size:7 final size:7
Alignment explanation
Indices: 74877094--74877163 Score: 59
Period size: 7 Copynumber: 10.0 Consensus size: 7
74877084 GTTAATTGAT
74877094 GGGTTTA
1 GGGTTTA
74877101 GGGTTTA
1 GGGTTTA
* *
74877108 AGTTTTA
1 GGGTTTA
* *
74877115 CGGTTTG
1 GGGTTTA
*
74877122 GGGTTTG
1 GGGTTTA
*
74877129 GGGTTAA
1 GGGTTTA
74877136 GGGTTTA
1 GGGTTTA
**
74877143 TAGTTTA
1 GGGTTTA
74877150 GGGTTTA
1 GGGTTTA
*
74877157 GGATTTA
1 GGGTTTA
74877164 CAATTAATTA
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 49 1.00
ACGTcount: A:0.17, C:0.01, G:0.37, T:0.44
Consensus pattern (7 bp):
GGGTTTA
Found at i:74877346 original size:15 final size:16
Alignment explanation
Indices: 74877314--74877352 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
74877304 GATATTCTAG
74877314 ATTAATATAAATGAAA
1 ATTAATATAAATGAAA
74877330 A-TAATATAAAT-ATAA
1 ATTAATATAAATGA-AA
74877345 ATTAATAT
1 ATTAATAT
74877353 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 1 0.05
15 13 0.62
16 7 0.33
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTAATATAAATGAAA
Found at i:74877604 original size:16 final size:16
Alignment explanation
Indices: 74877583--74877638 Score: 69
Period size: 16 Copynumber: 3.5 Consensus size: 16
74877573 CAAAAGTAAT
74877583 TAAAAGATACAATTAA
1 TAAAAGATACAATTAA
74877599 TAAAAGATACAATTAA
1 TAAAAGATACAATTAA
* * *
74877615 GAAATAAATA-AATAAA
1 TAAA-AGATACAATTAA
74877631 TAAAAGAT
1 TAAAAGAT
74877639 GTGAGATTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 3 0.09
16 27 0.79
17 4 0.12
ACGTcount: A:0.66, C:0.04, G:0.07, T:0.23
Consensus pattern (16 bp):
TAAAAGATACAATTAA
Found at i:74877988 original size:24 final size:24
Alignment explanation
Indices: 74877955--74878014 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
74877945 CACTTAGCCG
74877955 AAATTCCCCCCAAATTTCT-CCCCA
1 AAATT-CCCCCAAATTTCTCCCCCA
* *
74877979 AAATTGCCCCC-GATTTTTCCCCCA
1 AAATT-CCCCCAAATTTCTCCCCCA
*
74878003 AAAATCCCCCAA
1 AAATTCCCCCAA
74878015 TTCTAGAACC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.30, C:0.43, G:0.03, T:0.23
Consensus pattern (24 bp):
AAATTCCCCCAAATTTCTCCCCCA
Found at i:74878432 original size:12 final size:12
Alignment explanation
Indices: 74878415--74878446 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
74878405 TTTGAAACTT
74878415 TTCATAATTTTG
1 TTCATAATTTTG
74878427 TTCATAATTTTG
1 TTCATAATTTTG
*
74878439 TTAATAAT
1 TTCATAAT
74878447 AAGGTTCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (12 bp):
TTCATAATTTTG
Found at i:74880225 original size:22 final size:21
Alignment explanation
Indices: 74880192--74880236 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
74880182 CGACGCTGTT
*
74880192 ATTATATAATACGTAACTTAC
1 ATTATATAATACATAACTTAC
*
74880213 ATTAGTATTATACATAACTTAC
1 ATTA-TATAATACATAACTTAC
74880235 AT
1 AT
74880237 AACTTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (21 bp):
ATTATATAATACATAACTTAC
Found at i:74880237 original size:9 final size:9
Alignment explanation
Indices: 74880223--74880531 Score: 87
Period size: 9 Copynumber: 33.2 Consensus size: 9
74880213 ATTAGTATTA
74880223 TACATAACT
1 TACATAACT
74880232 TACATAACT
1 TACATAACT
74880241 TA-ATTAA-T
1 TACA-TAACT
*
74880249 TA-AT-ATT
1 TACATAACT
74880256 ATACATAACT
1 -TACATAACT
74880266 TAC--AACT
1 TACATAACT
74880273 TACATAACT
1 TACATAACT
*
74880282 TACATTAATAT
1 TACA-TAA-CT
*
74880293 TAAACATAAAT
1 T--ACATAACT
74880304 TACATAACT
1 TACATAACT
*
74880313 TACATTAATATT
1 TACA-T-A-ACT
*
74880325 ATACATAAAT
1 -TACATAACT
74880335 TACATAACT
1 TACATAACT
74880344 TA-ATTAA-T
1 TACA-TAACT
*
74880352 TA-AT-ATT
1 TACATAACT
*
74880359 ATACATAAAT
1 -TACATAACT
74880369 TACATAACT
1 TACATAACT
74880378 TA-ATTAA-T
1 TACA-TAACT
*
74880386 TA-AT-ATT
1 TACATAACT
74880393 ATACATAACT
1 -TACATAACT
*
74880403 TACATTAATATT
1 TACA-T-A-ACT
*
74880415 ATACATAAAT
1 -TACATAACT
74880425 TACATAACT
1 TACATAACT
*
74880434 TACATTAATAT
1 TACA-TAA-CT
*
74880445 TAAACATAAAT
1 T--ACATAACT
*
74880456 TATATAACT
1 TACATAACT
*
74880465 TACATTAATATT
1 TACA-T-A-ACT
*
74880477 ATACATAAAT
1 -TACATAACT
74880487 TACATAACT
1 TACATAACT
74880496 TA-ATTAA-T
1 TACA-TAACT
*
74880504 TA-AT-ATT
1 TACATAACT
*
74880511 ATACATAAAT
1 -TACATAACT
74880521 TACATAACT
1 TACATAACT
74880530 TA
1 TA
74880532 ATTAATTAAT
Statistics
Matches: 237, Mismatches: 21, Indels: 84
0.69 0.06 0.25
Matches are distributed among these distances:
6 4 0.02
7 15 0.06
8 28 0.12
9 118 0.50
10 23 0.10
11 16 0.07
12 15 0.06
13 18 0.08
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (9 bp):
TACATAACT
Found at i:74880242 original size:31 final size:31
Alignment explanation
Indices: 74880205--74880558 Score: 387
Period size: 31 Copynumber: 11.0 Consensus size: 31
74880195 ATATAATACG
* *
74880205 TAACTTACATTAGTATTATACATAACTTACA
1 TAACTTACATTAATATTATACATAAATTACA
*
74880236 TAACTTAATTAATTAATATTATACATAACTTACAACTTACA
1 TAACTT-A--CATTAATATTATAC---A--TA-AA-TTACA
*
74880277 TAACTTACATTAATATTAAACATAAATTACA
1 TAACTTACATTAATATTATACATAAATTACA
74880308 TAACTTACATTAATATTATACATAAATTACA
1 TAACTTACATTAATATTATACATAAATTACA
*
74880339 TAACTTAATTAATTAATATTATACATAAATTACA
1 TAACTT-A--CATTAATATTATACATAAATTACA
* *
74880373 TAACTTA-ATT-A-ATTA-ATAT-TA-TACA
1 TAACTTACATTAATATTATACATAAATTACA
74880398 TAACTTACATTAATATTATACATAAATTACA
1 TAACTTACATTAATATTATACATAAATTACA
* *
74880429 TAACTTACATTAATATTAAACATAAATTATA
1 TAACTTACATTAATATTATACATAAATTACA
74880460 TAACTTACATTAATATTATACATAAATTACA
1 TAACTTACATTAATATTATACATAAATTACA
*
74880491 TAACTTAATTAATTAATATTATACATAAATTACA
1 TAACTT-A--CATTAATATTATACATAAATTACA
* *
74880525 TAACTTAATTAATTAATATTATACATAACTTACA
1 TAACTT-A--CATTAATATTATACATAAATTACA
74880559 NNNNNNNNNN
Statistics
Matches: 284, Mismatches: 17, Indels: 41
0.83 0.05 0.12
Matches are distributed among these distances:
25 11 0.04
26 4 0.01
27 4 0.01
28 8 0.03
29 4 0.01
30 4 0.01
31 115 0.40
32 5 0.02
33 3 0.01
34 97 0.34
35 1 0.00
37 1 0.00
38 12 0.04
39 2 0.01
40 2 0.01
41 11 0.04
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (31 bp):
TAACTTACATTAATATTATACATAAATTACA
Found at i:74880258 original size:34 final size:34
Alignment explanation
Indices: 74880213--74880407 Score: 261
Period size: 34 Copynumber: 5.7 Consensus size: 34
74880203 CGTAACTTAC
* *
74880213 ATTAGTATTATACATAACTTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
* * *
74880247 ATTAATATTATACATAACTTACAACTTACATAACTTA
1 ATTAATATTATACATAAATTAC-A-TAACTTAA-TTA
* *
74880284 CATTAATATTAAACATAAATTACATAACTT-A--C
1 -ATTAATATTATACATAAATTACATAACTTAATTA
74880316 ATTAATATTATACATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
74880350 ATTAATATTATACATAAATTACATAACTTAATTA
1 ATTAATATTATACATAAATTACATAACTTAATTA
*
74880384 ATTAATATTATACATAACTTACAT
1 ATTAATATTATACATAAATTACAT
74880408 TAATATTATA
Statistics
Matches: 143, Mismatches: 11, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
31 28 0.20
32 1 0.01
34 78 0.55
35 2 0.01
36 10 0.07
37 4 0.03
38 20 0.14
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (34 bp):
ATTAATATTATACATAAATTACATAACTTAATTA
Found at i:74880285 original size:25 final size:25
Alignment explanation
Indices: 74880223--74880353 Score: 69
Period size: 25 Copynumber: 5.1 Consensus size: 25
74880213 ATTAGTATTA
74880223 TACATAACTTACATAACTTAATTAAT
1 TACATAACTTACATAACTTAA-TAAT
* *
74880249 TA-AT-ATTATACATAACTTACA-ACT
1 TACATAACT-TACATAACTTA-ATAAT
*
74880273 TACATAACTTACATTAA--TATTAA-
1 TACATAACTTACA-TAACTTAATAAT
*
74880296 -ACATAAATTACATAACTTACATTAATATT
1 TACATAACTTACATAACTTA-A-T-A-A-T
*
74880325 ATACATAAATTACATAACTTAATTAAT
1 -TACATAACTTACATAACTTAA-TAAT
74880352 TA
1 TA
74880354 ATATTATACA
Statistics
Matches: 82, Mismatches: 7, Indels: 32
0.68 0.06 0.26
Matches are distributed among these distances:
21 3 0.04
22 11 0.13
23 2 0.02
24 9 0.11
25 20 0.24
26 11 0.13
27 2 0.02
28 1 0.01
29 1 0.01
30 3 0.04
31 19 0.23
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (25 bp):
TACATAACTTACATAACTTAATAAT
Found at i:74880479 original size:18 final size:18
Alignment explanation
Indices: 74880428--74880479 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 18
74880418 CATAAATTAC
74880428 ATAACTTACATTAATATT
1 ATAACTTACATTAATATT
* *
74880446 A-AACATA-A--ATTA-T
1 ATAACTTACATTAATATT
74880459 ATAACTTACATTAATATT
1 ATAACTTACATTAATATT
74880477 ATA
1 ATA
74880480 CATAAATTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 10
0.64 0.10 0.26
Matches are distributed among these distances:
13 2 0.08
14 8 0.32
15 1 0.04
16 1 0.04
17 8 0.32
18 5 0.20
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAACTTACATTAATATT
Found at i:74880492 original size:152 final size:152
Alignment explanation
Indices: 74880272--74880558 Score: 565
Period size: 152 Copynumber: 1.9 Consensus size: 152
74880262 AACTTACAAC
74880272 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
1 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
74880337 CATAACTTAATTAATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAAC
66 CATAACTTAATTAATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAAC
74880402 TTACATTAATATTATACATAAA
131 TTACATTAATATTATACATAAA
*
74880424 TTACATAACTTACATTAATATTAAACATAAATTATATAACTTACATTAATATTATACATAAATTA
1 TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
74880489 CATAACTTAATTAATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAAC
66 CATAACTTAATTAATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAAC
74880554 TTACA
131 TTACA
74880559 NNNNNNNNNN
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 134 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (152 bp):
TTACATAACTTACATTAATATTAAACATAAATTACATAACTTACATTAATATTATACATAAATTA
CATAACTTAATTAATTAATATTATACATAAATTACATAACTTAATTAATTAATATTATACATAAC
TTACATTAATATTATACATAAA
Found at i:74883495 original size:42 final size:42
Alignment explanation
Indices: 74883372--74883495 Score: 144
Period size: 42 Copynumber: 3.0 Consensus size: 42
74883362 GTTTGTGAAA
* * * *
74883372 TAAGCGCAGCTAAAGAACA-CTACTTTTAGCGGCGTTTTTGACC
1 TAAGCGCCGCTAAAGAACATGTTC-TTTAGCGGCGTTTTT-TCC
* * *
74883415 -ACGCGCCACTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCC
*
74883456 TAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCCTTTTTT
1 TAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTT
74883496 TCTGTAAGAG
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.03
42 65 0.96
43 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTCC
Found at i:74884088 original size:6 final size:6
Alignment explanation
Indices: 74884077--74884136 Score: 54
Period size: 6 Copynumber: 10.2 Consensus size: 6
74884067 ACGTTAGCGA
***
74884077 ATAAAT ATAAAT ATAAAT ATAAAT AAATAAAT ATTTGT ATAAAT -TAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT --ATAAAT ATAAAT ATAAAT ATAAAT
74884126 -TAAAT -TAAAT A
1 ATAAAT ATAAAT A
74884137 ATTTATATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
5 15 0.33
6 24 0.53
8 6 0.13
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (6 bp):
ATAAAT
Found at i:74884143 original size:26 final size:26
Alignment explanation
Indices: 74884088--74884143 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
74884078 TAAATATAAA
*
74884088 TATAAATATAAATAAATAAATATTTG
1 TATAAATATAAATAAATAAATAATTG
74884114 TATAAAT-TAAATTAAATTAAATAATT-
1 TATAAATATAAA-TAAA-TAAATAATTG
74884140 TATA
1 TATA
74884144 TTTAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 4 0.15
26 15 0.56
27 8 0.30
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (26 bp):
TATAAATATAAATAAATAAATAATTG
Found at i:74884358 original size:25 final size:25
Alignment explanation
Indices: 74884330--74884381 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
74884320 AGGAGCCTTT
* *
74884330 AAATCAATTTGAATAAAATCAAATC
1 AAATCAATTGGAATAAAATAAAATC
** *
74884355 AAATTGATTGGAATCAAATAAAATC
1 AAATCAATTGGAATAAAATAAAATC
74884380 AA
1 AA
74884382 GATACATGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.27
Consensus pattern (25 bp):
AAATCAATTGGAATAAAATAAAATC
Found at i:74885752 original size:22 final size:22
Alignment explanation
Indices: 74885724--74885778 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
74885714 AAACAACTTA
74885724 GTCAACGGAAAATGACTTACAG
1 GTCAACGGAAAATGACTTACAG
74885746 GTCAACGGAAAATGACTTACAG
1 GTCAACGGAAAATGACTTACAG
74885768 GTCAACGGAAA
1 GTCAACGGAAA
74885779 TTAAGCCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (22 bp):
GTCAACGGAAAATGACTTACAG
Found at i:74888921 original size:21 final size:21
Alignment explanation
Indices: 74888892--74888962 Score: 90
Period size: 21 Copynumber: 3.4 Consensus size: 21
74888882 TTTTGCTCTA
* *
74888892 CTCTACTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
74888913 CTCTGCTTCCCTCGCTGCAAC
1 CTCTGCTTCCCTCGCTGCAGC
*
74888934 CGT-TGCTTCCCTCGCTGCCGC
1 C-TCTGCTTCCCTCGCTGCAGC
74888955 CTCTGCTT
1 CTCTGCTT
74888963 TAAGTTGTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
20 1 0.02
21 41 0.95
22 1 0.02
ACGTcount: A:0.06, C:0.45, G:0.17, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:74893553 original size:23 final size:23
Alignment explanation
Indices: 74893510--74893553 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
74893500 CCTAAATTAT
*
74893510 ACATATTTTAAAATTACATAAGA
1 ACATATTTTAAAATTAAATAAGA
74893533 ACATA-TTTAAAATATAAATAA
1 ACATATTTTAAAAT-TAAATAA
74893554 AAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.34
Consensus pattern (23 bp):
ACATATTTTAAAATTAAATAAGA
Found at i:74893575 original size:376 final size:377
Alignment explanation
Indices: 74892880--74893743 Score: 1328
Period size: 376 Copynumber: 2.3 Consensus size: 377
74892870 ACATCTAACC
*
74892880 CCTAACCCCTAAATCTTAAAT-CTCGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCC
1 CCTAACCCCTAAACCTTAAATCCT-GGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCC
*
74892944 CGAAATCCATATATATATAGTACTCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCA
65 CTAAATCCATATATATATAGTACTCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCA
74893009 AAATCTCAGTTAAACCTTAATCTTATTAAACCCGCCTAAATTAACCATTGAAGGGATATAAATAT
130 AAATCTCAGTTAAACCTTAATCTTATTAAACCCGCCTAAATTAACCATTGAAGGGATATAAATAT
* * *
74893074 TTAAGTATTCTATCTATTATATATATCTCTCTCAAGGCATAATTTAAACCCTAATTTATACATCT
195 TTAAGTACTCTATCTATTATATATA-CTCTCTCAAGGCATAATTTAAACCCTAAATTATACATAT
* *
74893139 TTTACAATTACATAAGAACATATTTAAAATATAAATAAAAAAATTAATCTAAACCCAAAATTGTA
259 TTTAAAATTACATAAGAACATATTTAAAATATAAATAAAAAAATTAATCTAAACCCAAAATCGTA
*
74893204 ACCAGA-CCTCTGAAACCTTAAAC-CTTAAATCCCTAAATCTTAACAACTAAC-AT
324 ACCAGATCC-CTGAAACCTTAAACAC-AAAATCCCTAAATCTTAACAACTAACAAT
*
74893257 -CTAACCCCTAAACCTTAAATCCTGGCCAACCCTTAGTTAAGCATAATCCATAATCTATAATCCC
1 CCTAACCCCTAAACCTTAAATCCTGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCCC
74893321 TAAATCCATATATATATAGTACTCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCAA
66 TAAATCCATATATATATAGTACTCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCAA
* * *
74893386 AATTTCAGTTAAACTTTAATCTTATTAAACCCGCCTAAATTAATCATTGAAGGGATATAAATATT
131 AATCTCAGTTAAACCTTAATCTTATTAAACCCGCCTAAATTAACCATTGAAGGGATATAAATATT
74893451 TAAGTACTCTATCTATTATATATA-TCTCTCAAGGCATAATTAATTAAACCCTAAATTATACATA
196 TAAGTACTCTATCTATTATATATACTCTCTCAAGGCATAA-T--TTAAACCCTAAATTATACATA
74893515 TTTTAAAATTACATAAGAACATATTTAAAATATAAATAAAAAAATTAATCTAAA-CCAAAATCGT
258 TTTTAAAATTACATAAGAACATATTTAAAATATAAATAAAAAAATTAATCTAAACCCAAAATCGT
* * * *
74893579 AACCCGATCCCTGAAACCTTAAACACAAAATCCTTAAGTCTTAACCACTAACATAT
323 AACCAGATCCCTGAAACCTTAAACACAAAATCCCTAAATCTTAACAACTAACA-AT
* * * *
74893635 AACCCCTAACCCCTAAACCTTAAATCCCGGCCAACCCTTAATTAAGCAAAACCCCTAATCTATAA
1 ----CCTAACCCCTAAACCTTAAATCCTGGCCAACCCTTAATTAAGCATAATCCATAATCTATAA
* * ** *
74893700 TCCATATATAAATCCATATATATAGTACTCCCTAAACCTTAAAA
62 TCCCTAAATCCAT--ATATATATAGTACTCCCTAAACATTAAAA
74893744 TTATATGAAC
Statistics
Matches: 446, Mismatches: 26, Indels: 22
0.90 0.05 0.04
Matches are distributed among these distances:
374 15 0.03
375 1 0.00
376 259 0.58
377 77 0.17
378 2 0.00
383 64 0.14
385 28 0.06
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (377 bp):
CCTAACCCCTAAACCTTAAATCCTGGCCAACCCTTAATTAAGCATAATCCATAATCTATAATCCC
TAAATCCATATATATATAGTACTCCCTAAACATTAAAAAGCATTAATTAATTGTATAAAATTCAA
AATCTCAGTTAAACCTTAATCTTATTAAACCCGCCTAAATTAACCATTGAAGGGATATAAATATT
TAAGTACTCTATCTATTATATATACTCTCTCAAGGCATAATTTAAACCCTAAATTATACATATTT
TAAAATTACATAAGAACATATTTAAAATATAAATAAAAAAATTAATCTAAACCCAAAATCGTAAC
CAGATCCCTGAAACCTTAAACACAAAATCCCTAAATCTTAACAACTAACAAT
Found at i:74894533 original size:84 final size:84
Alignment explanation
Indices: 74894392--74894559 Score: 273
Period size: 84 Copynumber: 2.0 Consensus size: 84
74894382 TGAAAACGCC
* *
74894392 GCTAAAAACACAGACCATTAGCGGCGCCAGACCAAAAACGCCACTAAGGCCACCGAAGGACACTA
1 GCTAAAAACACAAACCATTAGCGGCGCCAGAACAAAAACGCCACTAAGGCCACCGAAGGACACTA
* *
74894457 AACGATGCCGTTGTATTTT
66 AACGACGACGTTGTATTTT
* * *
74894476 GCTAAAAACACAAACCATTAGCGGCGCTAGAACAAAAATGCCACTAAGGCCACCGAAGGCCACTA
1 GCTAAAAACACAAACCATTAGCGGCGCCAGAACAAAAACGCCACTAAGGCCACCGAAGGACACTA
74894541 AACGACGACGTTGTATTTT
66 AACGACGACGTTGTATTTT
74894560 ATTTTTTGCG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 77 1.00
ACGTcount: A:0.37, C:0.27, G:0.20, T:0.16
Consensus pattern (84 bp):
GCTAAAAACACAAACCATTAGCGGCGCCAGAACAAAAACGCCACTAAGGCCACCGAAGGACACTA
AACGACGACGTTGTATTTT
Found at i:74894656 original size:198 final size:198
Alignment explanation
Indices: 74894312--74894727 Score: 654
Period size: 198 Copynumber: 2.1 Consensus size: 198
74894302 GTTTTTCTAG
* *
74894312 AAAACGCCACTAGGGCCACCGAAGGCAACTAAACGACGCTGTTGTATTTTATTTTTTGCGTCGTT
1 AAAACGCCACTAAGGCCACCGAAGGCAACTAAACGACGCTGTTGTATTTTATTTTTTGCGACGTT
**
74894377 TATCCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCCAGACCAAAAACGCCACTAAGGC
66 TATCCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCCAGAAAAAAAACGCCACTAAGGC
*
74894442 CACCGAAGGACACTAAACGATGCCGTTGTATTTTGCTAAAAACACAAACCATTAGCGGCGCTAGA
131 CACCGAAGGACACTAAACGACGCCGTTGTATTTTGCTAAAAACACAAACCATTAGCGGCGCTAGA
74894507 ACA
196 ACA
* *
74894510 AAAATGCCACTAAGGCCACCGAAGGCCACTAAACGACGAC-GTTGTATTTTATTTTTTGCGACGT
1 AAAACGCCACTAAGGCCACCGAAGGCAACTAAACGACG-CTGTTGTATTTTATTTTTTGCGACGT
* * * *
74894574 TTTTTCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCTAGAAAAAAAATGCCACTAAGG
65 TTATCCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCCAGAAAAAAAACGCCACTAAGG
* * * *
74894639 CCACCGAAGGCCACTAAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTGGCGGGGCTAG
130 CCACCGAAGGACACTAAACGACGCCGTTGTATTTTGCTAAAAACACAAACCATTAGCGGCGCTAG
*
74894704 ACCA
195 AACA
*
74894708 AAAACGCCACCGAAGGCCAC
1 AAAACGCCA-CTAAGGCCAC
74894728 TAAAAGACGC
Statistics
Matches: 198, Mismatches: 18, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
198 188 0.95
199 10 0.05
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (198 bp):
AAAACGCCACTAAGGCCACCGAAGGCAACTAAACGACGCTGTTGTATTTTATTTTTTGCGACGTT
TATCCTGAAAACGCCGCTAAAAACACAGACCATTAGCGGCGCCAGAAAAAAAACGCCACTAAGGC
CACCGAAGGACACTAAACGACGCCGTTGTATTTTGCTAAAAACACAAACCATTAGCGGCGCTAGA
ACA
Found at i:74894869 original size:84 final size:84
Alignment explanation
Indices: 74894713--74895089 Score: 583
Period size: 84 Copynumber: 4.4 Consensus size: 84
74894703 GACCAAAAAC
* *
74894713 GCCACCGAAGGCCACTAAAAGACGCCGTTGTATTTTATTCCGCTAAAAACACATACCATTAGCGG
1 GCCACCGAAGGCCACTAAACGACGCCGTTGTA--TT-TT--GCTAAAAACACAGACCATTAGCGG
74894778 CGCTAGACCAAAAACGCCACTAAG
61 CGCTAGACCAAAAACGCCACTAAG
* *
74894802 GCCACCGAAGGCCACTAAACGACGTCGTTGTATTTTGCTAAAAACACAGACCATTAGCAGCGCTA
1 GCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTA
74894867 GACCAAAAACGCCACTAAG
66 GACCAAAAACGCCACTAAG
74894886 GCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTA
1 GCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTA
* **
74894951 GACAAAAAATACCACTAAG
66 GACCAAAAACGCCACTAAG
* * * *
74894970 GCCACCGAAGGCCACTAAACGATGCCATTGTATTTTGCTAAAAACACAGACCATTAGCGGTGTTA
1 GCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTA
*
74895035 GACCAAAAACGCTACTAAG
66 GACCAAAAACGCCACTAAG
* *
74895054 GCCACCGAAGGCCACTAAATGAGGCCGTTGTATTTT
1 GCCACCGAAGGCCACTAAACGACGCCGTTGTATTTT
74895090 ATTTTTTGCG
Statistics
Matches: 268, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
84 234 0.87
86 2 0.01
87 2 0.01
89 30 0.11
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (84 bp):
GCCACCGAAGGCCACTAAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTA
GACCAAAAACGCCACTAAG
Found at i:74894989 original size:168 final size:168
Alignment explanation
Indices: 74894589--74895089 Score: 741
Period size: 168 Copynumber: 3.0 Consensus size: 168
74894579 CTGAAAACGC
*
74894589 CGCTAAAAACACAGACCATTAGCGGCGCTAGAAAAAAAATGCCACTAAGGCCACCGAAGGCCACT
1 CGCTAAAAACACAGACCATTAGCGGCGCTAGACAAAAAATGCCACTAAGGCCACCGAAGGCCACT
* *
74894654 AAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTGGCGGGGCTAGACC-AAAA---AC--
66 AAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTAGACCAAAAACGCACTA
74894713 --GCCACCGAAGGCCACTAAAAGACGCCGTTGTATTTTATT
131 AGGCCACCGAAGGCCACTAAAAGACGCCGTTGTA--TT-TT
* * *
74894752 CCGCTAAAAACACATACCATTAGCGGCGCTAGACCAAAAACGCCACTAAGGCCACCGAAGGCCAC
1 -CGCTAAAAACACAGACCATTAGCGGCGCTAGACAAAAAATGCCACTAAGGCCACCGAAGGCCAC
* *
74894817 TAAACGACGTCGTTGTATTTTGCTAAAAACACAGACCATTAGCAGCGCTAGACCAAAAACGCCAC
65 TAAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTAGACCAAAAACG-CAC
*
74894882 TAAGGCCACCGAAGGCCACTAAACGACGCCGTTGTATTTT
129 TAAGGCCACCGAAGGCCACTAAAAGACGCCGTTGTATTTT
*
74894922 -GCTAAAAACACAGACCATTAGCGGCGCTAGACAAAAAATACCACTAAGGCCACCGAAGGCCACT
1 CGCTAAAAACACAGACCATTAGCGGCGCTAGACAAAAAATGCCACTAAGGCCACCGAAGGCCACT
* * * *
74894986 AAACGATGCCATTGTATTTTGCTAAAAACACAGACCATTAGCGGTGTTAGACCAAAAACGCTACT
66 AAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTAGACCAAAAACGC-ACT
* *
74895051 AAGGCCACCGAAGGCCACTAAATGAGGCCGTTGTATTTT
130 AAGGCCACCGAAGGCCACTAAAAGACGCCGTTGTATTTT
74895090 ATTTTTTGCG
Statistics
Matches: 306, Mismatches: 21, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
164 110 0.36
165 4 0.01
167 1 0.00
168 154 0.50
169 2 0.01
170 2 0.01
171 2 0.01
173 31 0.10
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.18
Consensus pattern (168 bp):
CGCTAAAAACACAGACCATTAGCGGCGCTAGACAAAAAATGCCACTAAGGCCACCGAAGGCCACT
AAACGACGCCGTTGTATTTTGCTAAAAACACAGACCATTAGCGGCGCTAGACCAAAAACGCACTA
AGGCCACCGAAGGCCACTAAAAGACGCCGTTGTATTTT
Found at i:74895681 original size:3 final size:3
Alignment explanation
Indices: 74895673--74895701 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
74895663 AAAATACACA
74895673 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
74895702 AGACAGTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:74900175 original size:15 final size:15
Alignment explanation
Indices: 74900140--74900181 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
74900130 TTAGGAATTT
*
74900140 TATTAAATTAT-ATA
1 TATTTAATTATAATA
74900154 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
74900168 TATTTAATAATAAT
1 TATTTAATTATAAT
74900182 TATGTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:74900389 original size:44 final size:45
Alignment explanation
Indices: 74900326--74900424 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 45
74900316 GCTATTACAC
* *
74900326 TTCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCTTCTA
1 TTCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTA
* * *
74900370 TTCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTA
1 TTCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTA
74900415 TTCCATTACA
1 TTCCATTACA
74900425 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
43 1 0.02
44 23 0.48
45 24 0.50
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.33
Consensus pattern (45 bp):
TTCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTA
Found at i:74900532 original size:20 final size:21
Alignment explanation
Indices: 74900485--74900535 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
74900475 TTTTGATAAT
* *
74900485 CTCGAACCCTGAACTCTAAAT
1 CTCGAACCCTAAACTCTAAAC
* *
74900506 ATAGAACCCTAAACT-TAAAC
1 CTCGAACCCTAAACTCTAAAC
74900526 CTCGAACCCT
1 CTCGAACCCT
74900536 GAATCTCAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.37, C:0.33, G:0.08, T:0.22
Consensus pattern (21 bp):
CTCGAACCCTAAACTCTAAAC
Found at i:74900549 original size:20 final size:20
Alignment explanation
Indices: 74900485--74900546 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
74900475 TTTTGATAAT
*
74900485 CTCGAACCCTGAACTCTAAAT
1 CTCGAACCCTGAACTC-AAAC
* * * *
74900506 ATAGAACCCTAAACTTAAAC
1 CTCGAACCCTGAACTCAAAC
74900526 CTCGAACCCTGAATCTCAAAC
1 CTCGAACCCTGAA-CTCAAAC
74900547 TCGTAACTCG
Statistics
Matches: 31, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.39, C:0.32, G:0.08, T:0.21
Consensus pattern (20 bp):
CTCGAACCCTGAACTCAAAC
Found at i:74900839 original size:26 final size:27
Alignment explanation
Indices: 74900800--74900854 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
74900790 AGTTGTACAA
*
74900800 AAATAAAAATATTAACTTATG-AAAAG
1 AAATAAAAATATTAAATTATGTAAAAG
*
74900826 AAAT-AAAATAATTAAATTTTGTAAAAG
1 AAATAAAAAT-ATTAAATTATGTAAAAG
74900853 AA
1 AA
74900855 GAAAATGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 13 0.52
27 7 0.28
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATAAAAATATTAAATTATGTAAAAG
Found at i:74900859 original size:26 final size:25
Alignment explanation
Indices: 74900805--74900860 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
74900795 TACAAAAATA
* *
74900805 AAAATATTAACTTATGAAAAGAAAT
1 AAAATATTAAATTATGAAAAGAAAG
*
74900830 AAAATAATTAAATTTTGTAAAAG-AAG
1 AAAAT-ATTAAATTATG-AAAAGAAAG
74900856 AAAAT
1 AAAAT
74900861 GTTTGTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 5 0.19
26 16 0.62
27 5 0.19
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.29
Consensus pattern (25 bp):
AAAATATTAAATTATGAAAAGAAAG
Found at i:74920696 original size:13 final size:13
Alignment explanation
Indices: 74920675--74920738 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
74920665 ACACTTAACA
74920675 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
* *
74920688 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
*
74920701 TTTTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
74920714 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
74920727 TTTTCAAAAGCA
1 TTTTCAAAAGCA
74920739 TTGCCAAACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:74921840 original size:7 final size:7
Alignment explanation
Indices: 74921807--74921839 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
74921797 ATTAATTATA
*
74921807 ATAACAC
1 ATAAAAC
74921814 ATAAAAC
1 ATAAAAC
74921821 ATAAAAC
1 ATAAAAC
74921828 ATAAAAC
1 ATAAAAC
74921835 A-AAAA
1 ATAAAA
74921840 AATAGATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
6 4 0.16
7 21 0.84
ACGTcount: A:0.73, C:0.15, G:0.00, T:0.12
Consensus pattern (7 bp):
ATAAAAC
Found at i:74932824 original size:21 final size:21
Alignment explanation
Indices: 74932775--74932841 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
74932765 CCTCTTTGAA
* * *
74932775 CCATAACCAATTCGTACCAAATA
1 CCAT-ACCATTTCATACC-AATT
*
74932798 CCATACTATTTCATACCAATT
1 CCATACCATTTCATACCAATT
*
74932819 CCATACCATTTCGTACCAATT
1 CCATACCATTTCATACCAATT
74932840 CC
1 CC
74932842 CAAATACCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 24 0.63
22 10 0.26
23 4 0.11
ACGTcount: A:0.34, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
CCATACCATTTCATACCAATT
Found at i:74933182 original size:13 final size:12
Alignment explanation
Indices: 74933156--74933197 Score: 54
Period size: 11 Copynumber: 3.7 Consensus size: 12
74933146 AAAGGAGTTC
74933156 GAAAAAAAAA--
1 GAAAAAAAAATT
74933166 GAAAGAAAAAATT
1 GAAA-AAAAAATT
74933179 G-AAAAAAAATT
1 GAAAAAAAAATT
74933190 GAAAAAAA
1 GAAAAAAA
74933198 TTGCATACGG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.14
11 15 0.54
12 8 0.29
13 1 0.04
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.10
Consensus pattern (12 bp):
GAAAAAAAAATT
Found at i:74936690 original size:22 final size:22
Alignment explanation
Indices: 74936662--74936705 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
74936652 TTTTGAACCA
74936662 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
74936684 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
74936706 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:74939057 original size:16 final size:16
Alignment explanation
Indices: 74939038--74939068 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74939028 TGAAATAAGG
74939038 TTGTAATGGAATAGAA
1 TTGTAATGGAATAGAA
*
74939054 TTGTAATGTAATAGA
1 TTGTAATGGAATAGA
74939069 GCTGTAATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTGTAATGGAATAGAA
Found at i:74939146 original size:44 final size:46
Alignment explanation
Indices: 74939058--74939150 Score: 120
Period size: 44 Copynumber: 2.1 Consensus size: 46
74939048 ATAGAATTGT
* *
74939058 AATGTAATAGAGCTGTAATCAGTAATTCAGTTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAGTTGTTTGATTGAATGG
* *
74939104 AATGGAATAGAGTTGTAAT-AGT-ATTC-TTGTGTTTGATTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAGT-TGTTTGATTGAATGG
74939148 AAT
1 AAT
74939151 AGATATTGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 21 0.50
45 3 0.07
46 17 0.40
ACGTcount: A:0.31, C:0.04, G:0.26, T:0.39
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAATCAGTAATTCAGTTGTTTGATTGAATGG
Found at i:74939320 original size:26 final size:26
Alignment explanation
Indices: 74939244--74939333 Score: 67
Period size: 26 Copynumber: 3.3 Consensus size: 26
74939234 TTGTTATTAA
** * *
74939244 ATTTTAATAGGATTATTATTAAACAT
1 ATTTTAATATAATAATTATTAATCAT
*
74939270 AATTTT-ATAATAATAACTAATTTAATCAT
1 -ATTTTAAT-ATAATAA-TTA-TTAATCAT
74939299 ATTTTAATATAATAATTATTAAAT-AT
1 ATTTTAATATAATAATTATT-AATCAT
*
74939325 AATTTAATA
1 ATTTTAATA
74939334 AAAATAATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
26 14 0.27
27 14 0.27
28 14 0.27
29 9 0.18
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (26 bp):
ATTTTAATATAATAATTATTAATCAT
Found at i:74939334 original size:24 final size:23
Alignment explanation
Indices: 74939307--74939372 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 23
74939297 ATATTTTAAT
74939307 ATAATAATTATTAAATATAATTTA
1 ATAA-AATTATTAAATATAATTTA
74939331 ATAAAA--A-TAATATATAATTTA
1 ATAAAATTATTAA-ATATAATTTA
* *
74939352 ATAACATTCTT-AATATAATTT
1 ATAAAATTATTAAATATAATTT
74939373 GGTTCATCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
20 3 0.08
21 16 0.44
22 9 0.25
23 3 0.08
24 5 0.14
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAAAATTATTAAATATAATTTA
Found at i:74947308 original size:18 final size:19
Alignment explanation
Indices: 74947287--74947327 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
74947277 CATGGGTGGG
74947287 TTTTTT-TTT-TTTG-GAT
1 TTTTTTCTTTATTTGTGAT
*
74947303 TTTTTTCTTTATTTGTTAT
1 TTTTTTCTTTATTTGTGAT
74947322 TTTTTT
1 TTTTTT
74947328 GTTACTGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 3 0.14
18 4 0.19
19 8 0.38
ACGTcount: A:0.07, C:0.02, G:0.07, T:0.83
Consensus pattern (19 bp):
TTTTTTCTTTATTTGTGAT
Found at i:74954760 original size:12 final size:12
Alignment explanation
Indices: 74954740--74954770 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
74954730 AATATTTTTA
*
74954740 ATTTTATAATTT
1 ATTTAATAATTT
74954752 ATTTAATAATTT
1 ATTTAATAATTT
74954764 ATTTAAT
1 ATTTAAT
74954771 TGAACCAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTTAATAATTT
Found at i:74962992 original size:3 final size:3
Alignment explanation
Indices: 74962984--74963009 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
74962974 AATATGGTTC
74962984 TGT TGT TGT TGT TGT TGT TGT TGT TG
1 TGT TGT TGT TGT TGT TGT TGT TGT TG
74963010 CCCCTTATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65
Consensus pattern (3 bp):
TGT
Found at i:74966169 original size:29 final size:29
Alignment explanation
Indices: 74966137--74966195 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
74966127 TTGCGAATTC
*
74966137 TTGGACTGCCCACCATTTTGGCTTGCACT
1 TTGGACTGCCCACCAATTTGGCTTGCACT
*
74966166 TTGGACTGTCCACCAATTTGGCTTGCACT
1 TTGGACTGCCCACCAATTTGGCTTGCACT
74966195 T
1 T
74966196 GGATTGTCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.15, C:0.29, G:0.20, T:0.36
Consensus pattern (29 bp):
TTGGACTGCCCACCAATTTGGCTTGCACT
Found at i:74966217 original size:28 final size:29
Alignment explanation
Indices: 74966137--74966218 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 29
74966127 TTGCGAATTC
* * *
74966137 TTGGACTGCCCACCATTTTGGCTTGCACT
1 TTGGACTGTCCACCAATTTAGCTTGCACT
*
74966166 TTGGACTGTCCACCAATTTGGCTTGCAC-
1 TTGGACTGTCCACCAATTTAGCTTGCACT
* ** *
74966194 TTGGATTGTCTGCCACTTTAGCTTG
1 TTGGACTGTCCACCAATTTAGCTTG
74966219 TAGTGTCCAT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 20 0.43
29 26 0.57
ACGTcount: A:0.15, C:0.27, G:0.22, T:0.37
Consensus pattern (29 bp):
TTGGACTGTCCACCAATTTAGCTTGCACT
Found at i:74966270 original size:29 final size:29
Alignment explanation
Indices: 74966228--74966301 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 29
74966218 GTAGTGTCCA
*
74966228 TCATTTTGGCTTGCACTTTGGACTATCCG
1 TCATTTTGGCTTGCACTTTGGACTACCCG
74966257 TCATTTTGGCTTGCAC-TTGGACTACCCG
1 TCATTTTGGCTTGCACTTTGGACTACCCG
* *
74966285 TCACTTTGGCTTTCACT
1 TCATTTTGGCTTGCACT
74966302 GTCTACCATT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 25 0.61
29 16 0.39
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.41
Consensus pattern (29 bp):
TCATTTTGGCTTGCACTTTGGACTACCCG
Found at i:74966290 original size:79 final size:79
Alignment explanation
Indices: 74966141--74966325 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 79
74966131 GAATTCTTGG
* * * ** *
74966141 ACTGCCCACCATTTTGGCTTGCACTTTGGACTGTCCACCAATTTGGCTTGCACTTGGATTGTCTG
1 ACTGTCCACCATTTTGGCTTGCACTTTGGACTATCCACCAATTTGGCTTGCACTTGGACTACCCG
74966206 CCACTTTAGCTTGT-
66 CCACTTTAGCTT-TC
* * ** *
74966220 AGTGTCCATCATTTTGGCTTGCACTTTGGACTATCCGTCATTTTGGCTTGCACTTGGACTACCCG
1 ACTGTCCACCATTTTGGCTTGCACTTTGGACTATCCACCAATTTGGCTTGCACTTGGACTACCCG
* *
74966285 TCACTTTGGCTTTC
66 CCACTTTAGCTTTC
*
74966299 ACTGTCTACCATTTTGGCTTGCACTTT
1 ACTGTCCACCATTTTGGCTTGCACTTT
74966326 TTCATCTCGT
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 1 0.01
79 88 0.99
ACGTcount: A:0.15, C:0.27, G:0.19, T:0.39
Consensus pattern (79 bp):
ACTGTCCACCATTTTGGCTTGCACTTTGGACTATCCACCAATTTGGCTTGCACTTGGACTACCCG
CCACTTTAGCTTTC
Found at i:74968838 original size:3 final size:3
Alignment explanation
Indices: 74968830--74968854 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
74968820 TGAATGCTTA
74968830 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
74968855 GATTTTTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:74971886 original size:3 final size:3
Alignment explanation
Indices: 74971878--74971906 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
74971868 GTTTAAGGTA
74971878 TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
74971907 ATAGAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:74978099 original size:251 final size:251
Alignment explanation
Indices: 74977754--74978218 Score: 702
Period size: 251 Copynumber: 1.9 Consensus size: 251
74977744 GTGGTGTTTT
* * *
74977754 AACGCCACTGAAGGTATGCTATAGTGGCGTTTTATATTGAAACGCCGCAAATCCATAAATGTTTG
1 AACGCCACTGAAGGTATACTATAGTGGCGTTTTATATAGAAACACCGCAAATCCATAAATGTTTG
* * * *
74977819 TCTGTACGAAAACGGCGTCGTTTTCTTAAATGATTTGAACTCCTTACTGGCGTTTTTATTTAAAA
66 TCTGAACGAAAACGGCATCGTTTTCTTAAATGATTTGAACTCATTACTGGCGTTTGTATTTAAAA
* * * *
74977884 CGCCGCAAACTGTGATATTTAGCGGCGTTTGGTATGGAAACGCCACAAATGTGCATTACAAAATG
131 CGCCGC-AACTGTAAGATTTAGCGGCGTTTAGTATGAAAACGCCACAAATGTGCATTACAAAATG
74977949 TTCAGAACGTCACCGTTTCGTTACATGAATTTGAATTTTAGTGGCGTTTGTATGAAA
195 TTCAGAACGTCACCGTTTCGTTACATGAATTTGAATTTTAGTGGCGTTTGTATGAAA
* *
74978006 AACGCCACAT-AAGGTATAC-AGTAGTGGCGTTTT-TATAGAAACACCGCAAATTCATACATGTT
1 AACGCCAC-TGAAGGTATACTA-TAGTGGCGTTTTATATAGAAACACCGCAAATCCATAAATGTT
* * *
74978068 TTTGTGAACGAAAACGGCATCGTTTTCTTAAATGATTTGAACTCATTAGTGGCGTTTGTATTTAA
64 TGTCTGAACGAAAACGGCATCGTTTTCTTAAATGATTTGAACTCATTACTGGCGTTTGTATTTAA
* *
74978133 AACGCCGCAACTGTAAGCTTTAGCGGCGTTTAGTATGAAAACGCCACAAATGTGTATTACAAAAT
129 AACGCCGCAACTGTAAGATTTAGCGGCGTTTAGTATGAAAACGCCACAAATGTGCATTACAAAAT
**
74978198 GTTCAGAACGTTGCCGTTTCG
194 GTTCAGAACGTCACCGTTTCG
74978219 GTTGAGGAAC
Statistics
Matches: 191, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
250 70 0.37
251 92 0.48
252 28 0.15
253 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (251 bp):
AACGCCACTGAAGGTATACTATAGTGGCGTTTTATATAGAAACACCGCAAATCCATAAATGTTTG
TCTGAACGAAAACGGCATCGTTTTCTTAAATGATTTGAACTCATTACTGGCGTTTGTATTTAAAA
CGCCGCAACTGTAAGATTTAGCGGCGTTTAGTATGAAAACGCCACAAATGTGCATTACAAAATGT
TCAGAACGTCACCGTTTCGTTACATGAATTTGAATTTTAGTGGCGTTTGTATGAAA
Found at i:74985160 original size:9 final size:9
Alignment explanation
Indices: 74985146--74985184 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
74985136 AATTTTTAAA
74985146 TTACATAAC
1 TTACATAAC
*
74985155 TTACATAAA
1 TTACATAAC
*
74985164 TTATATAAC
1 TTACATAAC
74985173 TTACATAAC
1 TTACATAAC
74985182 TTA
1 TTA
74985185 TAAATATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (9 bp):
TTACATAAC
Found at i:74985185 original size:18 final size:18
Alignment explanation
Indices: 74985142--74985186 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
74985132 AAACAATTTT
*
74985142 TAAATTACATAACTTACA
1 TAAATTATATAACTTACA
74985160 TAAATTATATAACTTACA
1 TAAATTATATAACTTACA
*
74985178 TAACTTATA
1 TAAATTATA
74985187 AATATTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAATTATATAACTTACA
Found at i:74985220 original size:14 final size:15
Alignment explanation
Indices: 74985201--74985233 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
74985191 TTTATATACA
74985201 TTTT-AAATATATAT
1 TTTTAAAATATATAT
*
74985215 TTTTAAAATCTATAT
1 TTTTAAAATATATAT
74985230 TTTT
1 TTTT
74985234 TTCAAAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTAAAATATATAT
Found at i:74985375 original size:9 final size:9
Alignment explanation
Indices: 74985356--74985720 Score: 395
Period size: 9 Copynumber: 41.3 Consensus size: 9
74985346 CTTATATATA
*
74985356 AACTTGCAT
1 AACTTACAT
*
74985365 AACTTATAT
1 AACTTACAT
*
74985374 AAATTACAT
1 AACTTACAT
74985383 AACTTACAT
1 AACTTACAT
* *
74985392 AAATTATAT
1 AACTTACAT
74985401 AACTTACAT
1 AACTTACAT
* *
74985410 AAATTAAAT
1 AACTTACAT
74985419 AACTTACAT
1 AACTTACAT
*
74985428 ATCTTACAT
1 AACTTACAT
74985437 AACTTACAT
1 AACTTACAT
* *
74985446 AAATTAAAT
1 AACTTACAT
74985455 AACTTACAT
1 AACTTACAT
74985464 AACTTACAT
1 AACTTACAT
74985473 AACTTACAT
1 AACTTACAT
74985482 AA--TACAT
1 AACTTACAT
*
74985489 AACCTT-CCT
1 AA-CTTACAT
*
74985498 TACTTACAT
1 AACTTACAT
* ***
74985507 TA-TTGTTT
1 AACTTACAT
74985515 AA--TACAT
1 AACTTACAT
74985522 AACTTACAT
1 AACTTACAT
* *
74985531 AAATTATAT
1 AACTTACAT
74985540 AACTTACAT
1 AACTTACAT
* *
74985549 AAATTAAAT
1 AACTTACAT
74985558 AACTTACAT
1 AACTTACAT
74985567 AACTTACAT
1 AACTTACAT
* *
74985576 AAATTAAAT
1 AACTTACAT
74985585 AACTTACAT
1 AACTTACAT
74985594 AACTTACAT
1 AACTTACAT
*
74985603 AACTTAAAT
1 AACTTACAT
74985612 AACTTACAT
1 AACTTACAT
*
74985621 ATCTTACAT
1 AACTTACAT
*
74985630 AAATTACAT
1 AACTTACAT
* *
74985639 AAATTAAAT
1 AACTTACAT
*
74985648 AATTTACAT
1 AACTTACAT
*
74985657 AACTTACGT
1 AACTTACAT
74985666 AACTTACAT
1 AACTTACAT
*
74985675 AAATTACAT
1 AACTTACAT
74985684 AACTTACAT
1 AACTTACAT
74985693 AACTTACAT
1 AACTTACAT
74985702 AACTTACAT
1 AACTTACAT
74985711 AA--TACAT
1 AACTTACAT
74985718 AAC
1 AAC
74985721 CTTCCTTACT
Statistics
Matches: 295, Mismatches: 54, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
7 18 0.06
8 7 0.02
9 269 0.91
10 1 0.00
ACGTcount: A:0.47, C:0.16, G:0.01, T:0.36
Consensus pattern (9 bp):
AACTTACAT
Found at i:74986117 original size:39 final size:35
Alignment explanation
Indices: 74986081--74986148 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
74986071 GAATGCTCGC
74986081 CTAGTACTTCCTCTTCAACGATGGATGTATCTTGCT
1 CTAGT-CTTCCTCTTCAACGATGGATGTATCTTGCT
*
74986117 CTGGTCTTCCTCTTCAACGATGGATGTATCTT
1 CTAGTCTTCCTCTTCAACGATGGATGTATCTT
74986149 ATCCTGGTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 27 0.87
36 4 0.13
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.40
Consensus pattern (35 bp):
CTAGTCTTCCTCTTCAACGATGGATGTATCTTGCT
Found at i:74991313 original size:21 final size:21
Alignment explanation
Indices: 74991287--74991355 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
74991277 CAACAACTTA
*
74991287 AAGCAGAGGCGACAACAAGGG
1 AAGCAGAGGCGACAACAAGAG
* * *
74991308 AAGCAGAGGCTACAGCGAGAG
1 AAGCAGAGGCGACAACAAGAG
* *
74991329 AAGCAGAGGCCG-CAGCGAGAG
1 AAGCAGAGG-CGACAACAAGAG
74991350 AAGCAG
1 AAGCAG
74991356 CGATAGAAGC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
21 41 0.98
22 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.39, T:0.01
Consensus pattern (21 bp):
AAGCAGAGGCGACAACAAGAG
Found at i:74991953 original size:43 final size:42
Alignment explanation
Indices: 74991769--74992039 Score: 307
Period size: 42 Copynumber: 6.4 Consensus size: 42
74991759 GTTTGTGAAA
*
74991769 TAAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGACC
1 TAAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TCC
* *
74991812 -AAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTTTTCC
* * * *
74991853 CAAACGCCGCTAAAGAACATGATCTTTAGCGACGTTTTCTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
*
74991895 TAAGCGCCGCTAAAGAACATGATCGTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT-TTCC
* *
74991938 TAAGTGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCC
* * * *
74991981 TTAGCGCCGCTAAAGAAAATGTTCTTTAGCGGCGTTTTCTTCTG
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTT-TTC-C
*
74992025 TAAGTGCCGCTAAAG
1 TAAGCGCCGCTAAAG
74992040 TTAGCGACGT
Statistics
Matches: 198, Mismatches: 23, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
41 3 0.02
42 104 0.53
43 77 0.39
44 14 0.07
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCC
Found at i:74993226 original size:17 final size:17
Alignment explanation
Indices: 74993204--74993243 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
74993194 ATCACTTGGA
*
74993204 AAATTAATT-TTTATTTT
1 AAATTAATTGTTT-TTAT
74993221 AAATTAATTGTTTTTAT
1 AAATTAATTGTTTTTAT
74993238 AAATTA
1 AAATTA
74993244 TAATAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
AAATTAATTGTTTTTAT
Found at i:74993559 original size:17 final size:16
Alignment explanation
Indices: 74993519--74993561 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
74993509 GGGGGTGATT
74993519 GAGGAAAGAAAAAAAA
1 GAGGAAAGAAAAAAAA
* *
74993535 TAGAGAAAGAAAAAGAGA
1 GAG-GAAAGAAAAA-AAA
74993553 GAGGAAAGA
1 GAGGAAAGA
74993562 GAAGGAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 2 0.09
17 16 0.73
18 4 0.18
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.02
Consensus pattern (16 bp):
GAGGAAAGAAAAAAAA
Found at i:74993685 original size:21 final size:22
Alignment explanation
Indices: 74993655--74993695 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
74993645 ATATTTTATT
*
74993655 ATTTTCATATTATTTTTTAAAA
1 ATTTTCATATTATATTTTAAAA
*
74993677 ATTTT-ATATTGTATTTTAA
1 ATTTTCATATTATATTTTAA
74993696 TATAAAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
ATTTTCATATTATATTTTAAAA
Found at i:74995199 original size:18 final size:17
Alignment explanation
Indices: 74995166--74995204 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
74995156 TTTTATAAAT
74995166 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
74995184 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
74995201 TGTG
1 TGTG
74995205 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:74995462 original size:23 final size:23
Alignment explanation
Indices: 74995436--74995508 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
74995426 GTTATTGATT
*
74995436 AGTGGTAGCTTCGGCTACATTTC
1 AGTGGTAGCTTCGGCTACATATC
*
74995459 AGTGGTAGCTACGGCTACATATC
1 AGTGGTAGCTTCGGCTACATATC
*
74995482 AGTGGTAGCTTTGGCTACATATC
1 AGTGGTAGCTTCGGCTACATATC
74995505 AGTG
1 AGTG
74995509 TGGCACTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATATC
Found at i:74995680 original size:38 final size:37
Alignment explanation
Indices: 74995638--74995710 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
74995628 ATGTGTGGAA
* *
74995638 TTGAATTGAATATTGACTTGAAAA-TGGAAAAGTGAATT
1 TTGAATTGAATAGTGA-TT-AAAAGTGAAAAAGTGAATT
74995676 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAA
74995711 ATTATGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.45, C:0.01, G:0.22, T:0.32
Consensus pattern (37 bp):
TTGAATTGAATAGTGATTAAAAGTGAAAAAGTGAATT
Found at i:75003144 original size:40 final size:40
Alignment explanation
Indices: 75003085--75003216 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
75003075 CATTTGAATG
* *
75003085 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
75003125 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
75003165 ATATCCGGGCTAAGACCCGAGGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
75003205 ATATCC-GGCTAA
1 ATATCCGGGCTAA
75003217 ATTCAGAAGA
Statistics
Matches: 81, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
39 8 0.10
40 70 0.86
41 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:75016164 original size:18 final size:18
Alignment explanation
Indices: 75016141--75016226 Score: 86
Period size: 18 Copynumber: 4.8 Consensus size: 18
75016131 TAACGATGAG
*
75016141 ATTAAATGTGATAGCAAT
1 ATTAAATGTGATAACAAT
*
75016159 ATTAAATGTGATAACGAT
1 ATTAAATGTGATAACAAT
* *
75016177 AGCT-AATGTGAGCAACAA-
1 A-TTAAATGTGA-TAACAAT
* *
75016195 ATAAAATGTGATAGCAAT
1 ATTAAATGTGATAACAAT
75016213 ATTAAATGTGATAA
1 ATTAAATGTGATAA
75016227 ATGATACAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
17 4 0.08
18 44 0.83
19 5 0.09
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.29
Consensus pattern (18 bp):
ATTAAATGTGATAACAAT
Found at i:75016226 original size:54 final size:56
Alignment explanation
Indices: 75016144--75016256 Score: 178
Period size: 54 Copynumber: 2.0 Consensus size: 56
75016134 CGATGAGATT
75016144 AAATGTGATAGCAATATTAAATGTGAT-AACGATAGC-TAATGTGAG-CAACAAATA
1 AAATGTGATAGCAATATTAAATGTGATAAACGATA-CATAATGTGAGACAACAAATA
*
75016198 AAATGTGATAGCAATATTAAATGTGATAAATGATACAATAATGTGAGACAACAAATA
1 AAATGTGATAGCAATATTAAATGTGATAAACGATAC-ATAATGTGAGACAACAAATA
75016255 AA
1 AA
75016257 CTAAACGCAT
Statistics
Matches: 54, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
54 28 0.52
55 6 0.11
56 9 0.17
57 11 0.20
ACGTcount: A:0.50, C:0.08, G:0.17, T:0.26
Consensus pattern (56 bp):
AAATGTGATAGCAATATTAAATGTGATAAACGATACATAATGTGAGACAACAAATA
Found at i:75016325 original size:14 final size:14
Alignment explanation
Indices: 75016306--75016335 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75016296 CACCCACCCT
75016306 TAATTTCGAACAGA
1 TAATTTCGAACAGA
*
75016320 TAATTTTGAACAGA
1 TAATTTCGAACAGA
75016334 TA
1 TA
75016336 GGGATCAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.33
Consensus pattern (14 bp):
TAATTTCGAACAGA
Found at i:75019535 original size:30 final size:31
Alignment explanation
Indices: 75019468--75019537 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
75019458 TAGCACAAGA
* * *
75019468 GGTCACGCCTAGGGAAGATGCGGCACCCCTT
1 GGTCACGCCTAGGGAAGAGGCGGCACCCATC
*
75019499 GGTCACGCCTAGGGCAGAGGCGGCA-CCATC
1 GGTCACGCCTAGGGAAGAGGCGGCACCCATC
75019529 GGTCACGCC
1 GGTCACGCC
75019538 ATCTCCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
30 12 0.34
31 23 0.66
ACGTcount: A:0.19, C:0.34, G:0.34, T:0.13
Consensus pattern (31 bp):
GGTCACGCCTAGGGAAGAGGCGGCACCCATC
Found at i:75022429 original size:18 final size:18
Alignment explanation
Indices: 75022408--75022442 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75022398 AGGCCGGGCA
75022408 AGAGCCAGAGCCAGAGCT
1 AGAGCCAGAGCCAGAGCT
* *
75022426 AGAGCCCGAGCCCGAGC
1 AGAGCCAGAGCCAGAGC
75022443 CAAAGCCCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.34, G:0.34, T:0.03
Consensus pattern (18 bp):
AGAGCCAGAGCCAGAGCT
Found at i:75027589 original size:16 final size:16
Alignment explanation
Indices: 75027547--75027590 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
75027537 TTATATATGA
*
75027547 TATTTTAAAATTTATT
1 TATTTTAAAATTAATT
75027563 TATCTTT-AAATTAATT
1 TAT-TTTAAAATTAATT
75027579 TATTTTAAAATT
1 TATTTTAAAATT
75027591 CCTCTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 3 0.12
16 19 0.76
17 3 0.12
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTTTAAAATTAATT
Found at i:75027917 original size:18 final size:18
Alignment explanation
Indices: 75027894--75027928 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
75027884 AAGTTCTCCA
*
75027894 TTTTATATATATTACTTC
1 TTTTATATATACTACTTC
75027912 TTTTATATATACTACTT
1 TTTTATATATACTACTT
75027929 ATATAGATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTATATATACTACTTC
Found at i:75027965 original size:15 final size:13
Alignment explanation
Indices: 75027928--75027957 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
75027918 ATATACTACT
75027928 TATATAG-ATTAA
1 TATATAGTATTAA
75027940 TATATAGTATTAA
1 TATATAGTATTAA
75027953 TATAT
1 TATAT
75027958 TAGTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (13 bp):
TATATAGTATTAA
Found at i:75027981 original size:24 final size:24
Alignment explanation
Indices: 75027953--75027999 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 24
75027943 ATAGTATTAA
75027953 TATATTAGTTATTTT-GATTTTTGG
1 TATA-TAGTTATTTTAGATTTTTGG
*
75027977 TATATATTTATTTTAAGATTTTT
1 TATATAGTTATTTT-AGATTTTT
75028000 TTTGTATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 4 0.20
25 7 0.35
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.64
Consensus pattern (24 bp):
TATATAGTTATTTTAGATTTTTGG
Found at i:75028012 original size:3 final size:3
Alignment explanation
Indices: 75028006--75028046 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
75027996 TTTTTTTGTA
75028006 TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
75028047 TTAAAACCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:75033271 original size:30 final size:30
Alignment explanation
Indices: 75033216--75033277 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
75033206 CACTAAGCAA
75033216 GTTTTATATACATGTATCATCCATTT-CAT
1 GTTTTATATACATGTATCATCCATTTCCAT
75033245 GTTTTAATATATCATGTAAT-AT-CATTTCCAT
1 GTTTT-ATATA-CATGT-ATCATCCATTTCCAT
75033276 GT
1 GT
75033278 ATCTCATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 5 0.17
30 10 0.34
31 12 0.41
32 2 0.07
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.48
Consensus pattern (30 bp):
GTTTTATATACATGTATCATCCATTTCCAT
Found at i:75033479 original size:25 final size:24
Alignment explanation
Indices: 75033451--75033543 Score: 98
Period size: 25 Copynumber: 3.8 Consensus size: 24
75033441 ATATGTTTTC
*
75033451 ACGAGCTATAAATTGGTAAGCTCAT
1 ACGAGCTA-AAATCGGTAAGCTCAT
75033476 ACGAGCTAAGAATCGGTAAGCTC-T
1 ACGAGCTAA-AATCGGTAAGCTCAT
* * *
75033500 CATGAGCTACAATCGGTAAGCTTAT
1 -ACGAGCTAAAATCGGTAAGCTCAT
*
75033525 ACGAGCTGAGAATCGGTAA
1 ACGAGCT-AAAATCGGTAA
75033544 TCCCTAATGA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
24 20 0.34
25 38 0.66
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (24 bp):
ACGAGCTAAAATCGGTAAGCTCAT
Found at i:75033483 original size:50 final size:48
Alignment explanation
Indices: 75033420--75033539 Score: 123
Period size: 50 Copynumber: 2.4 Consensus size: 48
75033410 ATACATGTAT
* * * * *
75033420 GCTCATACAAGCTATGAATCGATATGTTTTCACGAGCTATAAATTGGTAA
1 GCTCATACGAGCTA-GAATCGATAAGCTCTCACGAGCTA-AAATCGGTAA
* * *
75033470 GCTCATACGAGCTAAGAATCGGTAAGCTCTCATGAGCTACAATCGGTAA
1 GCTCATACGAGCT-AGAATCGATAAGCTCTCACGAGCTAAAATCGGTAA
*
75033519 GCTTATACGAGCTGAGAATCG
1 GCTCATACGAGCT-AGAATCG
75033540 GTAATCCCTA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 27 0.46
50 31 0.53
51 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (48 bp):
GCTCATACGAGCTAGAATCGATAAGCTCTCACGAGCTAAAATCGGTAA
Found at i:75034482 original size:12 final size:12
Alignment explanation
Indices: 75034465--75034507 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 12
75034455 AACTAATCCT
75034465 CTCTCAAATTTC
1 CTCTCAAATTTC
75034477 CTCTC-AATTTC
1 CTCTCAAATTTC
75034488 CT-TCAAAATTT-
1 CTCTC-AAATTTC
75034499 CTCTCAAAT
1 CTCTCAAAT
75034508 CCATATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 2 0.07
11 14 0.50
12 12 0.43
ACGTcount: A:0.28, C:0.30, G:0.00, T:0.42
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:75036348 original size:18 final size:18
Alignment explanation
Indices: 75036321--75036360 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
75036311 CAGGTGCGTT
*
75036321 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
75036339 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
75036357 TCCT
1 TCCT
75036361 TTTTCCGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:75036863 original size:25 final size:24
Alignment explanation
Indices: 75036835--75036890 Score: 94
Period size: 25 Copynumber: 2.3 Consensus size: 24
75036825 TATTTTGATA
75036835 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAA-T
75036860 TTATTTGATGTAATAAAATAGAAT
1 TTATTTGATGTAATAAAATAGAAT
*
75036884 TTTTTTG
1 TTATTTG
75036891 TGTTATTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 7 0.23
25 23 0.77
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (24 bp):
TTATTTGATGTAATAAAATAGAAT
Found at i:75036867 original size:45 final size:45
Alignment explanation
Indices: 75036780--75036867 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
75036770 ATATTTTGAA
* *
75036780 TATTTTGATATTATTTTATGTAATAAAATAAAAATTTTTTTGAGT
1 TATTTTGATATTATTTGATGTAATAAAATAAAAATTTATTTGAGT
* *
75036825 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAAAAATTTATTTGA
75036868 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAATAAAATAAAAATTTATTTGAGT
Found at i:75036906 original size:69 final size:70
Alignment explanation
Indices: 75036790--75036919 Score: 226
Period size: 69 Copynumber: 1.9 Consensus size: 70
75036780 TATTTTGATA
*
75036790 TTATTTTATGTAATAAAATAAAAATTTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
1 TTATTTGATGTAATAAAATAAAAATTTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
75036855 GAAGT
66 GAAGT
* *
75036860 TTATTTGATGTAATAAAAT-AGAATTTTTTTGTGTTATTTTGATATTATTTGATGTAATAA
1 TTATTTGATGTAATAAAATAAAAATTTTTTTGAGTTATTTTGATATTATTTGATGTAATAA
75036920 CATGAGCTTA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
69 39 0.68
70 18 0.32
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (70 bp):
TTATTTGATGTAATAAAATAAAAATTTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
GAAGT
Found at i:75040236 original size:124 final size:124
Alignment explanation
Indices: 75039953--75040325 Score: 547
Period size: 124 Copynumber: 3.0 Consensus size: 124
75039943 CCCAAACATG
* * *
75039953 CTACTGTAGCAAAAGCGCTTCCATGAGGGCGCGATTTCACTAATTCTTCTCAAATAGCATCC-TG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCAT-
* *
75040017 TTAGAAGCGATTTTATA-AATTTACTCAGAAACGTC-AAAAAAATTATTTCTTCCATGAC
65 CTAGAAGCGATTTTATACTATTTACTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
*
75040075 CTACTGTAGCAAAAGCGCGTCCACGAAGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCATC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCATC
* * * *
75040140 TAGAAGCAATTTTATACTATTTTCTCAGAAACATCAAAAAAAATTATTTCTTCTATGAC
66 TAGAAGCGATTTTATACTATTTACTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
* *
75040199 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGTGATTTCACAAATTCTTCTCAAATAGCATCCAGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCATC
* ** *
75040264 TAGAAGCGATTTTATACTATTTGA-TCAGAAATGTCAACTCAAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTT-ACTCAGAAACGTCAA-AAAAAATTATTTCTTCCATGAC
75040324 CT
1 CT
75040326 CAAAACCCTA
Statistics
Matches: 225, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
122 73 0.32
123 16 0.07
124 116 0.52
125 20 0.09
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCATC
TAGAAGCGATTTTATACTATTTACTCAGAAACGTCAAAAAAAATTATTTCTTCCATGAC
Found at i:75043179 original size:19 final size:19
Alignment explanation
Indices: 75043144--75043205 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 19
75043134 AAATTTTGGA
*
75043144 AATTTTAGAAA-TATTTTG
1 AATTTTAAAAATTATTTTG
*
75043162 AATTTTAAAAATTATTTTA
1 AATTTTAAAAATTATTTTG
* * *
75043181 AATGTTCAAAATTAATTTG
1 AATTTTAAAAATTATTTTG
75043200 AATTTT
1 AATTTT
75043206 TTTTTTTGGA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
18 10 0.28
19 26 0.72
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (19 bp):
AATTTTAAAAATTATTTTG
Found at i:75044941 original size:36 final size:36
Alignment explanation
Indices: 75044901--75044991 Score: 101
Period size: 36 Copynumber: 2.5 Consensus size: 36
75044891 CACTTGCCCG
* * * * * *
75044901 TGTGCCCTACATGACCTGCATGATTTTACACGACCA
1 TGTGCCCCACACGACCTACATGATTTCAAACAACCA
**
75044937 TGTGCCCCACACGGTCTACATGATTTCAAACAACCA
1 TGTGCCCCACACGACCTACATGATTTCAAACAACCA
*
75044973 TGTGCCCCACACGGCCTAC
1 TGTGCCCCACACGACCTAC
75044992 CCACACGATT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.23
Consensus pattern (36 bp):
TGTGCCCCACACGACCTACATGATTTCAAACAACCA
Found at i:75050307 original size:3 final size:3
Alignment explanation
Indices: 75050299--75050336 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
75050289 TTAGTATCAA
75050299 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
75050337 AAATAAGAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:75051076 original size:3 final size:3
Alignment explanation
Indices: 75051068--75051105 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
75051058 TTAGTATCAA
75051068 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
75051106 AAATAAGAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:75051147 original size:769 final size:769
Alignment explanation
Indices: 75049670--75051207 Score: 3067
Period size: 769 Copynumber: 2.0 Consensus size: 769
75049660 GTGTACAAGT
*
75049670 CGAAGGCTAGAAGTCTTCCAGTTTCTAAGCACAGATTCGACTCAGTTAATTCCCTGCATAGTTCA
1 CGAAGGCTAGAAGTCTTCCAGTTTCTAAGCACAGATTCGACTCAGTTAATTCCATGCATAGTTCA
75049735 AGATAGGCTCGTGGCGGGCTTTGGCAAAGATAGCGTTGTAGAAATATGAGTCAATGTGGAGATTT
66 AGATAGGCTCGTGGCGGGCTTTGGCAAAGATAGCGTTGTAGAAATATGAGTCAATGTGGAGATTT
75049800 GTTAAGTATGACTCCTATTTTCAGTCAAATTTGAAAAATAATATTTTAGTTAAACTCTGTTTATT
131 GTTAAGTATGACTCCTATTTTCAGTCAAATTTGAAAAATAATATTTTAGTTAAACTCTGTTTATT
75049865 TATTTCAGTCAAACACTGATTAGTTTAGATTATTTTATTATTTGACATATGAATTTAGCCTATAA
196 TATTTCAGTCAAACACTGATTAGTTTAGATTATTTTATTATTTGACATATGAATTTAGCCTATAA
75049930 ATAGGCTCTTGTACAACCTTAGAAAATACACCCATTAGATTAGAACTCATAACACATTCAGAGAA
261 ATAGGCTCTTGTACAACCTTAGAAAATACACCCATTAGATTAGAACTCATAACACATTCAGAGAA
75049995 TTTTGTGTTTACGTTTTGAGGGTTGTTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATC
326 TTTTGTGTTTACGTTTTGAGGGTTGTTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATC
75050060 TTTTGTACTCTTCATTCTTTTGCCATTATAGTAAAATTATTTTTGCCCGTGGCTTTTTATCCTCT
391 TTTTGTACTCTTCATTCTTTTGCCATTATAGTAAAATTATTTTTGCCCGTGGCTTTTTATCCTCT
75050125 TTGGAGGGGTTTTTCCACGTTAAATTTGTGTGTTCATCTTCTCAATTTCTTCCGCTATTTTTACT
456 TTGGAGGGGTTTTTCCACGTTAAATTTGTGTGTTCATCTTCTCAATTTCTTCCGCTATTTTTACT
75050190 TGTTTGTTGCTTAATCGGGACGATCCCTAACAGACTCACTGAGAGGAATACTCGAAGAAGGAGAA
521 TGTTTGTTGCTTAATCGGGACGATCCCTAACAGACTCACTGAGAGGAATACTCGAAGAAGGAGAA
75050255 CTTGTTAAAGCACAATGTGACGAGCTGTAAAAAGTTAGTATCAAAAGAAGAAGAAGAAGAAGAAG
586 CTTGTTAAAGCACAATGTGACGAGCTGTAAAAAGTTAGTATCAAAAGAAGAAGAAGAAGAAGAAG
75050320 AAGAAGAAGAAGAAGAAAAATAAGAGGTAGGAAATTTAAATGGAAAAACAATTTCATGAAAAACC
651 AAGAAGAAGAAGAAGAAAAATAAGAGGTAGGAAATTTAAATGGAAAAACAATTTCATGAAAAACC
75050385 ACAACTCTATTAACAAAGAAGGTTTTTGTTTCAAGATTAAACAAAATATAACCC
716 ACAACTCTATTAACAAAGAAGGTTTTTGTTTCAAGATTAAACAAAATATAACCC
75050439 CGAAGGCTAGAAGTCTTCCAGTTTCTAAGCACAGATTCGACTCAGTTAATTCCATGCATAGTTCA
1 CGAAGGCTAGAAGTCTTCCAGTTTCTAAGCACAGATTCGACTCAGTTAATTCCATGCATAGTTCA
75050504 AGATAGGCTCGTGGCGGGCTTTGGCAAAGATAGCGTTGTAGAAATATGAGTCAATGTGGAGATTT
66 AGATAGGCTCGTGGCGGGCTTTGGCAAAGATAGCGTTGTAGAAATATGAGTCAATGTGGAGATTT
75050569 GTTAAGTATGACTCCTATTTTCAGTCAAATTTGAAAAATAATATTTTAGTTAAACTCTGTTTATT
131 GTTAAGTATGACTCCTATTTTCAGTCAAATTTGAAAAATAATATTTTAGTTAAACTCTGTTTATT
75050634 TATTTCAGTCAAACACTGATTAGTTTAGATTATTTTATTATTTGACATATGAATTTAGCCTATAA
196 TATTTCAGTCAAACACTGATTAGTTTAGATTATTTTATTATTTGACATATGAATTTAGCCTATAA
75050699 ATAGGCTCTTGTACAACCTTAGAAAATACACCCATTAGATTAGAACTCATAACACATTCAGAGAA
261 ATAGGCTCTTGTACAACCTTAGAAAATACACCCATTAGATTAGAACTCATAACACATTCAGAGAA
75050764 TTTTGTGTTTACGTTTTGAGGGTTGTTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATC
326 TTTTGTGTTTACGTTTTGAGGGTTGTTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATC
75050829 TTTTGTACTCTTCATTCTTTTGCCATTATAGTAAAATTATTTTTGCCCGTGGCTTTTTATCCTCT
391 TTTTGTACTCTTCATTCTTTTGCCATTATAGTAAAATTATTTTTGCCCGTGGCTTTTTATCCTCT
75050894 TTGGAGGGGTTTTTCCACGTTAAATTTGTGTGTTCATCTTCTCAATTTCTTCCGCTATTTTTACT
456 TTGGAGGGGTTTTTCCACGTTAAATTTGTGTGTTCATCTTCTCAATTTCTTCCGCTATTTTTACT
75050959 TGTTTGTTGCTTAATCGGGACGATCCCTAACAGACTCACTGAGAGGAATACTCGAAGAAGGAGAA
521 TGTTTGTTGCTTAATCGGGACGATCCCTAACAGACTCACTGAGAGGAATACTCGAAGAAGGAGAA
75051024 CTTGTTAAAGCACAATGTGACGAGCTGTAAAAAGTTAGTATCAAAAGAAGAAGAAGAAGAAGAAG
586 CTTGTTAAAGCACAATGTGACGAGCTGTAAAAAGTTAGTATCAAAAGAAGAAGAAGAAGAAGAAG
75051089 AAGAAGAAGAAGAAGAAAAATAAGAGGTAGGAAATTTAAATGGAAAAACAATTTCATGAAAAACC
651 AAGAAGAAGAAGAAGAAAAATAAGAGGTAGGAAATTTAAATGGAAAAACAATTTCATGAAAAACC
75051154 ACAACTCTATTAACAAAGAAGGTTTTTGTTTCAAGATTAAACAAAATATAACCC
716 ACAACTCTATTAACAAAGAAGGTTTTTGTTTCAAGATTAAACAAAATATAACCC
75051208 TTTTGTACAG
Statistics
Matches: 768, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
769 768 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (769 bp):
CGAAGGCTAGAAGTCTTCCAGTTTCTAAGCACAGATTCGACTCAGTTAATTCCATGCATAGTTCA
AGATAGGCTCGTGGCGGGCTTTGGCAAAGATAGCGTTGTAGAAATATGAGTCAATGTGGAGATTT
GTTAAGTATGACTCCTATTTTCAGTCAAATTTGAAAAATAATATTTTAGTTAAACTCTGTTTATT
TATTTCAGTCAAACACTGATTAGTTTAGATTATTTTATTATTTGACATATGAATTTAGCCTATAA
ATAGGCTCTTGTACAACCTTAGAAAATACACCCATTAGATTAGAACTCATAACACATTCAGAGAA
TTTTGTGTTTACGTTTTGAGGGTTGTTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATC
TTTTGTACTCTTCATTCTTTTGCCATTATAGTAAAATTATTTTTGCCCGTGGCTTTTTATCCTCT
TTGGAGGGGTTTTTCCACGTTAAATTTGTGTGTTCATCTTCTCAATTTCTTCCGCTATTTTTACT
TGTTTGTTGCTTAATCGGGACGATCCCTAACAGACTCACTGAGAGGAATACTCGAAGAAGGAGAA
CTTGTTAAAGCACAATGTGACGAGCTGTAAAAAGTTAGTATCAAAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAAAATAAGAGGTAGGAAATTTAAATGGAAAAACAATTTCATGAAAAACC
ACAACTCTATTAACAAAGAAGGTTTTTGTTTCAAGATTAAACAAAATATAACCC
Found at i:75057085 original size:23 final size:23
Alignment explanation
Indices: 75057053--75057097 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
75057043 GGGAAATTTA
*
75057053 AGATGGTGTATATTTGAGATTAG
1 AGATGATGTATATTTGAGATTAG
75057076 AGATGATGTATATTTGAGATTA
1 AGATGATGTATATTTGAGATTA
75057098 TTACCTGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.27, T:0.40
Consensus pattern (23 bp):
AGATGATGTATATTTGAGATTAG
Found at i:75059397 original size:16 final size:16
Alignment explanation
Indices: 75059376--75059417 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
75059366 TTATTAAATT
*
75059376 ATATATTTTAATTATA
1 ATATATTTTAATAATA
75059392 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
75059407 AT-TATGTTTAA
1 ATATAT-TTTAA
75059418 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:75059402 original size:15 final size:15
Alignment explanation
Indices: 75059367--75059408 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
75059357 TTAAGAATTT
*
75059367 TATTAAATTAT-ATA
1 TATTTAATTATAATA
75059381 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
75059395 TATTTAATAATAAT
1 TATTTAATTATAAT
75059409 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:75059588 original size:39 final size:40
Alignment explanation
Indices: 75059545--75059649 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
75059535 TTCCATTATG
75059545 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
75059584 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
75059629 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
75059650 ATACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:75059643 original size:45 final size:44
Alignment explanation
Indices: 75059543--75059650 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 44
75059533 TTTTCCATTA
75059543 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
75059582 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
75059627 TGCTATTACACCTCTATTCCATTA
1 TGCTATTACACCTCTATTCCATTA
75059651 TACCTCTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 16 0.29
40 1 0.02
44 16 0.29
45 23 0.41
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:75069626 original size:47 final size:46
Alignment explanation
Indices: 75069575--75069676 Score: 134
Period size: 47 Copynumber: 2.2 Consensus size: 46
75069565 GTGGTTTAAC
* * *
75069575 CACATATCTGTTTTGGCAGT-TTGACTTCAATTATAGTGGCTCGACCA
1 CACATATCTGTTCTGGCA-TCTTAACTGCAA-TATAGTGGCTCGACCA
*
75069622 CACATATCTGTTCTGGCATCTTAACTGCAATATAGTGGCTTGACCA
1 CACATATCTGTTCTGGCATCTTAACTGCAATATAGTGGCTCGACCA
*
75069668 CATATATCT
1 CACATATCT
75069677 AATCTGGTAG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
46 24 0.49
47 25 0.51
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (46 bp):
CACATATCTGTTCTGGCATCTTAACTGCAATATAGTGGCTCGACCA
Found at i:75069669 original size:46 final size:47
Alignment explanation
Indices: 75069575--75069697 Score: 151
Period size: 46 Copynumber: 2.6 Consensus size: 47
75069565 GTGGTTTAAC
* * *
75069575 CACATATCTGTTTTGGCAGTTTGACTTCAATTATAGTGGCTCGACCA
1 CACATATCTGTTCTGGCAGTTTAACTGCAATTATAGTGGCTCGACCA
*
75069622 CACATATCTGTTCTGGCA-TCTTAACTGCAA-TATAGTGGCTTGACCA
1 CACATATCTGTTCTGGCAGT-TTAACTGCAATTATAGTGGCTCGACCA
* ** *
75069668 CATATATCTAATCTGGTAGTTTAACTGCAA
1 CACATATCTGTTCTGGCAGTTTAACTGCAA
75069698 CTCTGGTGGC
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 40 0.61
47 26 0.39
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (47 bp):
CACATATCTGTTCTGGCAGTTTAACTGCAATTATAGTGGCTCGACCA
Found at i:75070804 original size:3 final size:3
Alignment explanation
Indices: 75070798--75070847 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
75070788 ATGTTGTTTG
75070798 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
75070846 TA
1 TA
75070848 AGTTTTAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:75080182 original size:42 final size:42
Alignment explanation
Indices: 75080123--75080213 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
75080113 TTGGAAAAAT
*
75080123 GCCCATGTCCTTGCTCGTGTGGCTCACATGGCCTAGGCACAC
1 GCCCATGCCCTTGCTCGTGTGGCTCACATGGCCTAGGCACAC
* *
75080165 GCCCATGCCCTTGCTCGTGTGGTTCACATGGCCTGGGCACAC
1 GCCCATGCCCTTGCTCGTGTGGCTCACATGGCCTAGGCACAC
75080207 GCCCATG
1 GCCCATG
75080214 TCCTCTGTCT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.13, C:0.36, G:0.27, T:0.23
Consensus pattern (42 bp):
GCCCATGCCCTTGCTCGTGTGGCTCACATGGCCTAGGCACAC
Found at i:75081016 original size:6 final size:6
Alignment explanation
Indices: 75081005--75081065 Score: 88
Period size: 6 Copynumber: 10.3 Consensus size: 6
75080995 TAACAGAATT
*
75081005 GAAAAA GAAAAA -AAAAA GAAAAA GAAAAA TAAAAA GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
* *
75081052 TAAAAA GAAGAA GA
1 GAAAAA GAAAAA GA
75081066 GGAAGAAACG
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
5 5 0.10
6 44 0.90
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:75081033 original size:18 final size:18
Alignment explanation
Indices: 75081005--75081065 Score: 106
Period size: 18 Copynumber: 3.4 Consensus size: 18
75080995 TAACAGAATT
75081005 GAAAAAGAAAAA-AAAAA
1 GAAAAAGAAAAATAAAAA
75081022 GAAAAAGAAAAATAAAAA
1 GAAAAAGAAAAATAAAAA
75081040 GAAAAAGAAAAATAAAAA
1 GAAAAAGAAAAATAAAAA
*
75081058 GAAGAAGA
1 GAAAAAGA
75081066 GGAAGAAACG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
17 12 0.29
18 30 0.71
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (18 bp):
GAAAAAGAAAAATAAAAA
Found at i:75083080 original size:21 final size:21
Alignment explanation
Indices: 75083056--75083096 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
75083046 AAGGCTTAAG
*
75083056 GTCGTGTGGAAGGGTTACACA
1 GTCGTGTGGAACGGTTACACA
75083077 GTCGTGTGGAACGGTTACAC
1 GTCGTGTGGAACGGTTACAC
75083097 GGCCGTGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.22, C:0.17, G:0.37, T:0.24
Consensus pattern (21 bp):
GTCGTGTGGAACGGTTACACA
Found at i:75083103 original size:21 final size:21
Alignment explanation
Indices: 75083058--75083104 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
75083048 GGCTTAAGGT
* *
75083058 CGTGTGGAAGGGTTACACAGT
1 CGTGTGGAACGGTTACACAGC
*
75083079 CGTGTGGAACGGTTACACGGC
1 CGTGTGGAACGGTTACACAGC
75083100 CGTGT
1 CGTGT
75083105 AACAAGCTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.19, G:0.38, T:0.23
Consensus pattern (21 bp):
CGTGTGGAACGGTTACACAGC
Found at i:75084764 original size:19 final size:20
Alignment explanation
Indices: 75084737--75084777 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
75084727 GTTAAAAATG
75084737 TTTTAATTAT-TATTTGAAT
1 TTTTAATTATATATTTGAAT
*
75084756 TTTTTATTATAATATTTGAAT
1 TTTTAATTAT-ATATTTGAAT
75084777 T
1 T
75084778 GATACATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
21 10 0.53
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTAATTATATATTTGAAT
Found at i:75092617 original size:21 final size:20
Alignment explanation
Indices: 75092581--75092622 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
75092571 AATTGTTATC
75092581 AAGATTTGGCAGGATTTACAA
1 AAGATTTGGCAGGATTT-CAA
75092602 AAGATTTGGC-GAGATTTCAA
1 AAGATTTGGCAG-GATTTCAA
75092622 A
1 A
75092623 TTGATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.29
Consensus pattern (20 bp):
AAGATTTGGCAGGATTTCAA
Done.