Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 243 of 313
Found at i:75093606 original size:15 final size:17
Alignment explanation
Indices: 75093586--75093618 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
75093576 CTCCACAGAA
75093586 TATTTTT-T-ATTTTTT
1 TATTTTTCTAATTTTTT
75093601 TATTTTTCTAATTTTTT
1 TATTTTTCTAATTTTTT
75093618 T
1 T
75093619 CACCTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TATTTTTCTAATTTTTT
Found at i:75094081 original size:12 final size:12
Alignment explanation
Indices: 75094064--75094088 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75094054 GGAAAAAAAT
75094064 AAAATAAAGAAG
1 AAAATAAAGAAG
75094076 AAAATAAAGAAG
1 AAAATAAAGAAG
75094088 A
1 A
75094089 TAGATGGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAATAAAGAAG
Found at i:75095278 original size:16 final size:17
Alignment explanation
Indices: 75095251--75095283 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
75095241 TAGAACTGGG
*
75095251 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
75095268 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
75095284 ATTAATTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:75101615 original size:172 final size:172
Alignment explanation
Indices: 75101329--75101672 Score: 688
Period size: 172 Copynumber: 2.0 Consensus size: 172
75101319 AAAGTTAGGG
75101329 CACTGTGTTCGTGAAAATCAGACCCGGGTTAATTTTGATTTGGCAGTGTACAAGTCAAAGGCTAG
1 CACTGTGTTCGTGAAAATCAGACCCGGGTTAATTTTGATTTGGCAGTGTACAAGTCAAAGGCTAG
75101394 AAGTTTTTCAGTTTCTAAGCACAGATTCGACTTAGTTAATTCCCTGCATAGTTCAAGATAGGCTC
66 AAGTTTTTCAGTTTCTAAGCACAGATTCGACTTAGTTAATTCCCTGCATAGTTCAAGATAGGCTC
75101459 ATGGCAGGCTTTGACAAAGATGGCATTGTGGAAATATGAGTA
131 ATGGCAGGCTTTGACAAAGATGGCATTGTGGAAATATGAGTA
75101501 CACTGTGTTCGTGAAAATCAGACCCGGGTTAATTTTGATTTGGCAGTGTACAAGTCAAAGGCTAG
1 CACTGTGTTCGTGAAAATCAGACCCGGGTTAATTTTGATTTGGCAGTGTACAAGTCAAAGGCTAG
75101566 AAGTTTTTCAGTTTCTAAGCACAGATTCGACTTAGTTAATTCCCTGCATAGTTCAAGATAGGCTC
66 AAGTTTTTCAGTTTCTAAGCACAGATTCGACTTAGTTAATTCCCTGCATAGTTCAAGATAGGCTC
75101631 ATGGCAGGCTTTGACAAAGATGGCATTGTGGAAATATGAGTA
131 ATGGCAGGCTTTGACAAAGATGGCATTGTGGAAATATGAGTA
75101673 AAGGTGGAGA
Statistics
Matches: 172, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
172 172 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (172 bp):
CACTGTGTTCGTGAAAATCAGACCCGGGTTAATTTTGATTTGGCAGTGTACAAGTCAAAGGCTAG
AAGTTTTTCAGTTTCTAAGCACAGATTCGACTTAGTTAATTCCCTGCATAGTTCAAGATAGGCTC
ATGGCAGGCTTTGACAAAGATGGCATTGTGGAAATATGAGTA
Found at i:75105458 original size:4 final size:4
Alignment explanation
Indices: 75105449--75105501 Score: 106
Period size: 4 Copynumber: 13.2 Consensus size: 4
75105439 TCGGGAAAAA
75105449 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
75105497 ATGT A
1 ATGT A
75105502 CCTAGGTTGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:75107501 original size:29 final size:30
Alignment explanation
Indices: 75107469--75107527 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
75107459 GATAAAAAAT
75107469 AAAAAATAAAATCAATTGAG-CCTTCATGA
1 AAAAAATAAAATCAATTGAGCCCTTCATGA
* * *
75107498 AAAAAGTACATTCAATTGAGCCCTTCATGA
1 AAAAAATAAAATCAATTGAGCCCTTCATGA
75107528 TTCAAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.25
Consensus pattern (30 bp):
AAAAAATAAAATCAATTGAGCCCTTCATGA
Found at i:75108239 original size:30 final size:31
Alignment explanation
Indices: 75108203--75108262 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
75108193 GATTTCAATT
75108203 CAGTCACTCAA-ATT-TCGAAAAATAACAAAC
1 CAGTCACT-AACATTATCGAAAAATAACAAAC
* *
75108233 CAGTCACTAACATTATTGAAAAATGACAAA
1 CAGTCACTAACATTATCGAAAAATAACAAA
75108263 TTAGTTACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 2 0.08
30 11 0.42
31 13 0.50
ACGTcount: A:0.50, C:0.20, G:0.08, T:0.22
Consensus pattern (31 bp):
CAGTCACTAACATTATCGAAAAATAACAAAC
Found at i:75108331 original size:21 final size:21
Alignment explanation
Indices: 75108305--75108346 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
75108295 TTAACGGGAC
75108305 AGCTGATGTGGCCAGTTAACT
1 AGCTGATGTGGCCAGTTAACT
*
75108326 AGCTGATGTGGCTAGTTAACT
1 AGCTGATGTGGCCAGTTAACT
75108347 TGCCATGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (21 bp):
AGCTGATGTGGCCAGTTAACT
Found at i:75108444 original size:29 final size:30
Alignment explanation
Indices: 75108406--75108466 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
75108396 CCTTTTCCAT
75108406 TTTTTAATAAAT-GACCCAATAT-TTT-TAC
1 TTTTTAATAAATAG-CCCAATATGTTTATAC
75108434 TTTTTACATAAATAGCCCAATATGTTTATAC
1 TTTTTA-ATAAATAGCCCAATATGTTTATAC
75108465 TT
1 TT
75108467 CTTCTTCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
28 6 0.21
29 14 0.48
30 4 0.14
31 5 0.17
ACGTcount: A:0.34, C:0.15, G:0.05, T:0.46
Consensus pattern (30 bp):
TTTTTAATAAATAGCCCAATATGTTTATAC
Found at i:75108908 original size:3 final size:3
Alignment explanation
Indices: 75108902--75108932 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
75108892 TTAACAAAAA
75108902 AAG AAG AAG AAG -AG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
75108933 ATGGAGATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:75108921 original size:14 final size:14
Alignment explanation
Indices: 75108902--75108928 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75108892 TTAACAAAAA
75108902 AAGAAGAAGAAGAG
1 AAGAAGAAGAAGAG
75108916 AAGAAGAAGAAGA
1 AAGAAGAAGAAGA
75108929 AGAAATGGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (14 bp):
AAGAAGAAGAAGAG
Found at i:75113938 original size:12 final size:13
Alignment explanation
Indices: 75113923--75113951 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
75113913 TCCAAAACAA
75113923 AAAATGAAAAT-G
1 AAAATGAAAATGG
75113935 AAAATGAAAATGG
1 AAAATGAAAATGG
75113948 AAAA
1 AAAA
75113952 ACCAAGAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (13 bp):
AAAATGAAAATGG
Found at i:75121909 original size:21 final size:20
Alignment explanation
Indices: 75121858--75121909 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
75121848 GGTTGGATTT
75121858 TATATATTTA-AAATTTATAA
1 TATAT-TTTATAAATTTATAA
* * *
75121878 TAAAATGTATAATATTTATAA
1 TATATTTTATAA-ATTTATAA
75121899 TATATTTTATA
1 TATATTTTATA
75121910 TGCATCCGGG
Statistics
Matches: 24, Mismatches: 6, Indels: 3
0.73 0.18 0.09
Matches are distributed among these distances:
19 3 0.12
20 5 0.21
21 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TATATTTTATAAATTTATAA
Found at i:75123111 original size:4 final size:4
Alignment explanation
Indices: 75123102--75123130 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
75123092 ATTGAAATGT
75123102 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
75123131 ACTTTGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:75133890 original size:15 final size:15
Alignment explanation
Indices: 75133870--75133902 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
75133860 ATTATTATTA
*
75133870 TTTTCTTTTTCTTTT
1 TTTTCTTTTTATTTT
75133885 TTTTCTTTTTATTTT
1 TTTTCTTTTTATTTT
75133900 TTT
1 TTT
75133903 AAACTAAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTCTTTTTATTTT
Found at i:75147641 original size:22 final size:22
Alignment explanation
Indices: 75147608--75147649 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
75147598 AGTTAAAAAT
75147608 TATTATTATTAAATAATTATAC
1 TATTATTATTAAATAATTATAC
75147630 TATT-TTATTTAAATAATTAT
1 TATTATTA-TTAAATAATTAT
75147650 CGCATTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTATTATTAAATAATTATAC
Found at i:75150062 original size:22 final size:22
Alignment explanation
Indices: 75150012--75150062 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
75150002 AGTGTATGTC
* *
75150012 TATATACATATTATAAAACTAT
1 TATATATATATTATAAAACAAT
*
75150034 TAAATATATA-TATAAAA-AAT
1 TATATATATATTATAAAACAAT
75150054 TATATATAT
1 TATATATAT
75150063 GTAAGTATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 10 0.40
21 7 0.28
22 8 0.32
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (22 bp):
TATATATATATTATAAAACAAT
Found at i:75152085 original size:46 final size:46
Alignment explanation
Indices: 75152032--75152304 Score: 361
Period size: 46 Copynumber: 5.9 Consensus size: 46
75152022 AGGATTGGCA
* * * *
75152032 ATCTTCGATCCACTCCACAGCCAAATACAGGAAAATAAGATCTGCT
1 ATCTTCGATCCACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
75152078 ATCTTCGATCCACTCCGCTGCCAAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCCACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
75152124 ATCTTCGATCCACTTCGTTGCCAAATACAAGAAGACAAGATCTGCT
1 ATCTTCGATCCACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
75152170 ATCTTCGATCTC-CTCCGCTGCCAAATACAGGAAGATAAGATCTGTT
1 ATCTTCGATC-CACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
75152216 ATTTTCGATCTC-CTCTGCTGCCAAATACAGGAAGACAATATCTACT
1 ATCTTCGATC-CACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
75152262 TTCTTCGATCTACTTCGCTGCCAAATACAGGAAGACAAGATCT
1 ATCTTCGATCCACTCCGCTGCCAAATACAGGAAGACAAGATCT
75152305 CTGGCTTCAA
Statistics
Matches: 199, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
46 198 0.99
47 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (46 bp):
ATCTTCGATCCACTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
Found at i:75152434 original size:87 final size:87
Alignment explanation
Indices: 75152314--75153691 Score: 411
Period size: 87 Copynumber: 15.9 Consensus size: 87
75152304 TCTGGCTTCA
* *
75152314 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCT
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTGAAA-TCTTCGATCTACTCCACTGTAACCT
75152379 CAGGGAGATAAGA-CCTGATGCG
65 CAGGGAGATAAGATCCTGATGCG
* * * * ** * * * *
75152401 ATCTACTCTACTGTAACTTCAGAGAGATGAGATCCT-TTATGTT-AATCCACTCCACTGTAACTT
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGAT-CTGAAATCTTCGATCTACTCCACTGTAACCT
** *
75152464 CAGGGAGATAAGATAGTGTCTTG-G
65 CAGGGAGATAAGATCCTG--ATGCG
** ** * * *
75152488 ATCTGCTCTGCTGTAATCTT-AGGGAGATAAGATCT-CTAGCTTCAATCTGCTCCACTGTAACCT
1 ATCTGCTCCACTGTAA-CTTCAGGGAGATAAGATCTGAAATCTTCGATCTACTCCACTGTAACCT
* *
75152551 CGGGGAGATAAGAT-CTGAAATTCTTCG
65 CAGGGAGATAAGATCCTG--A---TGCG
* * * * * * * *
75152578 GTTTACTCCACTGTAACCTCAAGGAGATAAGACCTG--A--TGCGATCTACTCTACTGTAACCTC
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTGAAATCTTCGATCTACTCCACTGTAACCTC
* * ***
75152639 AGAGAGATAAGATCCTAAATTTTA
66 AGGGAGATAAGATCCT-GA-TGCG
* * * ** * * *
75152663 ATCCGCTCCACTGTAACTTCAGGGAGATAGGA-CAG-TGTCTTGGATCTGCT-CAGCTGTAATCT
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTGAAATCTTCGATCTACTCCA-CTGTAACCT
* * *
75152725 TAGGGAGATAAGATCTCTGGCTTC-
65 CAGGGAGATAAGATC-CT-GATGCG
* * * *
75152749 AGTCTGCTCCAATGTAA-TCTCGGGGAGATAAGATTTGAAATTCTTCGGTCTACTCCACTGTAAC
1 A-TCTGCTCCACTGTAACT-TCAGGGAGATAAGATCTGAAA-TCTTCGATCTACTCCACTGTAAC
75152813 CTCAGGGAGATAAGA-CCTGATGCG
63 CTCAGGGAGATAAGATCCTGATGCG
* * * ** ** * *
75152837 ATCTACTCTACTGTAACCTT-AGAGAGATAAGATCCT-AAAT-TTTAATCCGCTCCACTATAACT
1 ATCTGCTCCACTGTAA-CTTCAGGGAGATAAGAT-CTGAAATCTTCGATCTACTCCACTGTAACC
* ** *
75152899 TCAGGGAGATAGGATAGTGTCTTG-G
64 TCAGGGAGATAAGATCCTG--ATGCG
* **** * * *
75152924 ATCTGCT-CAGCTGTAA-TCTCAGAGAGATAAGATCT-CTGGCTTCAATCTGCTCCAAC-GTAAT
1 ATCTGCTCCA-CTGTAACT-TCAGGGAGATAAGATCTGAAATCTTCGATCTACTCC-ACTGTAAC
* * *
75152985 CTCGGGGAGATAAGAT-CTAAAATTCTTCG
63 CTCAGGGAGATAAGATCCT--GA---TGCG
* * * * * *
75153014 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG--A--TGCGATCTACTCTACTGTAACCTC
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTGAAATCTTCGATCTACTCCACTGTAACCTC
* * ***
75153075 AGAGAGATAAGATCCTAAATTTTA
66 AGGGAGATAAGATCCT-GA-TGCG
* * * * * * ** *
75153099 ATCCGCTCCACTGTAACTTTAGGGAGATAGGATAGTG---TCTTGGATCTGCTCTGCTGTAATCT
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGAT-CTGAAATCTTCGATCTACTCCACTGTAACCT
* *
75153161 CAGAGAGATAAGA-CCTGATACG
65 CAGGGAGATAAGATCCTGATGCG
* * * * *** ** ** * *
75153183 ATCTACTCTACTATAACTTCAGAGAGATAAGATCTTTTAT-TTTAATCCGCTCTACTGTAATCTC
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTGAAATCTTCGATCTACTCCACTGTAACCTC
* * * *
75153247 AGGGAGATAGGATTACT-ATCTTCA
66 AGGGAGATAAGA-TCCTGA--TGCG
* * * * *
75153271 ATCTGCTCCGCTGTAA-TCGCAGGGAGATAAGATCTG--A--TACGATCTACTCTACTGTAACTT
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCTGAAATCTTCGATCTACTCCACTGTAACCT
* * ***
75153331 CAGAGAGATAAGATCCTTTATTTTA
65 CAGGGAGATAAGATCC-TGA-TGCG
* * ** * * * *
75153356 ATCCGCTCCACTGTAA-TCTCAGGGAGATAGGAT-T-ACTCTCTTCAATCTGCTCCGCTGTAATC
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCTGA-AATCTTCGATCTACTCCACTGTAACC
* *
75153418 GCAGGGAGATAAGAT-CTGATACG
64 TCAGGGAGATAAGATCCTGATGCG
* * * ** ** ** *
75153441 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTAT-TTTAATCCGCTCCACTGTAATCT
1 ATCTGCTCCACTGTAACTTCAGGGAGATAAGAT-CTGAAATCTTCGATCTACTCCACTGTAACCT
* * * *
75153504 CAGGGAGATAGGATTACTCT-CTTCA
65 CAGGGAGATAAGA-T-C-CTGATGCG
* * * * *
75153529 ATCTGCTCCGCTGTAA-TCGCAGGGAGATAAGATCTG--A--TACGATCTACTCTACTGTAACTT
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCTGAAATCTTCGATCTACTCCACTGTAACCT
* * ***
75153589 CAGAGAGATAAGATCCTTTATTTTA
65 CAGGGAGATAAGATCC-TGA-TGCG
* * * * * * * *
75153614 ATCCGATCCACTATAA-TCTCAGGGAGATAGGAT-T-ACTATCTTCAATCTGCTCCATTGTAACC
1 ATCTGCTCCACTGTAACT-TCAGGGAGATAAGATCTGA-AATCTTCGATCTACTCCACTGTAACC
75153676 TCAGGGAGATAAGATC
64 TCAGGGAGATAAGATC
75153692 TAAAATTCTT
Statistics
Matches: 957, Mismatches: 251, Indels: 165
0.70 0.18 0.12
Matches are distributed among these distances:
82 1 0.00
83 3 0.00
84 34 0.04
85 318 0.33
86 43 0.04
87 324 0.34
88 139 0.15
89 9 0.01
90 82 0.09
91 4 0.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (87 bp):
ATCTGCTCCACTGTAACTTCAGGGAGATAAGATCTGAAATCTTCGATCTACTCCACTGTAACCTC
AGGGAGATAAGATCCTGATGCG
Found at i:75152676 original size:218 final size:218
Alignment explanation
Indices: 75152298--75153173 Score: 1493
Period size: 218 Copynumber: 4.0 Consensus size: 218
75152288 ACAGGAAGAC
*
75152298 AAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTC
1 AAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCGGGGAGATAAGATCTGAAATTCTTCGGTC
*
75152363 TACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGA
66 TACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGA
* ** * * *
75152428 TGAGATCCTTTATGTTAATCCACTCCACTGTAACTTCAGGGAGATAAGATAGTGTCTTGGATCTG
131 TAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTG
* * *
75152493 CTCTGCTGTAATCTTAGGGAGAT
196 CTCAGCTGTAATCTCAGAGAGAT
* *
75152516 AAGATCTCTAGCTTCAATCTGCTCCACTGTAACCTCGGGGAGATAAGATCTGAAATTCTTCGGTT
1 AAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCGGGGAGATAAGATCTGAAATTCTTCGGTC
*
75152581 TACTCCACTGTAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGA
66 TACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGA
*
75152646 TAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGACAGTGTCTTGGATCTG
131 TAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTG
* *
75152711 CTCAGCTGTAATCTTAGGGAGAT
196 CTCAGCTGTAATCTCAGAGAGAT
* * * *
75152734 AAGATCTCTGGCTTCAGTCTGCTCCAATGTAATCTCGGGGAGATAAGATTTGAAATTCTTCGGTC
1 AAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCGGGGAGATAAGATCTGAAATTCTTCGGTC
*
75152799 TACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTTAGAGAGA
66 TACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGA
*
75152864 TAAGATCCTAAATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATAGTGTCTTGGATCTG
131 TAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTG
75152929 CTCAGCTGTAATCTCAGAGAGAT
196 CTCAGCTGTAATCTCAGAGAGAT
* *
75152952 AAGATCTCTGGCTTCAATCTGCTCCAAC-GTAATCTCGGGGAGATAAGATCTAAAATTCTTCGGT
1 AAGATCTCTGGCTTCAATCTGCTCC-ACTGTAACCTCGGGGAGATAAGATCTGAAATTCTTCGGT
75153016 CTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAG
65 CTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAG
*
75153081 ATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATAGTGTCTTGGATCT
130 ATAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCT
*
75153146 GCTCTGCTGTAATCTCAGAGAGAT
195 GCTCAGCTGTAATCTCAGAGAGAT
75153170 AAGA
1 AAGA
75153174 CCTGATACGA
Statistics
Matches: 624, Mismatches: 33, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
218 623 1.00
219 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (218 bp):
AAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCGGGGAGATAAGATCTGAAATTCTTCGGTC
TACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGA
TAAGATCCTAAATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTGGATCTG
CTCAGCTGTAATCTCAGAGAGAT
Found at i:75153123 original size:85 final size:84
Alignment explanation
Indices: 75152488--75153817 Score: 470
Period size: 85 Copynumber: 15.3 Consensus size: 84
75152478 AGTGTCTTGG
** * * * * *
75152488 ATCTGCTCTGCTGTAATCTTAGGGAGATAAGATCTCTAGCTTCAATCTGCTCCACTGTAACCTCG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-C-CT-GATTCGATCTGCTCTACTGTAACCTCA
* * *
75152553 GGGAGATAAGAT-CTGAAATTCTTCG
63 GAGAGATAAGATCCT--TATT-TT-A
* * * * * * *
75152578 GTTTACTCCACTGTAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATTCGATCTGCTCTACTGTAACCTCAGAG
*
75152643 AGATAAGATCCTAAATTTTA
66 AGATAAGATCCT-TATTTTA
* * * * * * *
75152663 ATCCGCTCCACTGTAA-CTTCAGGGAGATAGGACAGTGTCTTGGATCTGCTC-AGCTGTAATCTT
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGAC-CTG-ATTCGATCTGCTCTA-CTGTAACCTC
* *** *
75152726 AGGGAGATAAGATCTCTGGCTTCA
62 AGAGAGATAAGATC-CTTATTTTA
* * * ** * * *
75152750 GTCTGCTCCAATGTAATCTCGGGGAGATAAGATTTGAAATTCTTCGGTCTACTCCACTGTAACCT
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG--A---TTCGATCTGCTCTACTGTAACCT
* * ***
75152815 CAGGGAGATAAGA-CCTGA-TGCG
61 CAGAGAGATAAGATCCTTATTTTA
* * * * * * ** * * * *
75152837 ATCTACTCTACTGTAACCTTAGAGAGATAAGATCCTAAATTTTAATCCGCTCCACTATAACTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-CCT-GA-TTCGATCTGCTCTACTGTAACCTCA
* * ** * **
75152902 GGGAGATAGGATAGTGT-CTTGG
63 GAGAGATAAGATCCT-TATTTTA
* * * * *
75152924 ATCTGCT-CAGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCAAC-GTAATCT
1 ATCTGCTCCA-CTGTAATCTCAGGGAGATAAGA-C-CT-GATTCGATCTGCT-CTACTGTAACCT
* * * *
75152987 CGGGGAGATAAGAT-CTAAAATTCTTCG
61 CAGAGAGATAAGATCCT--TATT-TT-A
* * * * *
75153014 GTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATTCGATCTGCTCTACTGTAACCTCAGAG
*
75153079 AGATAAGATCCTAAATTTTA
66 AGATAAGATCCT-TATTTTA
* * * ** * * * *
75153099 ATCCGCTCCACTGTAA-CTTTAGGGAGATAGGATAGTGTCTTGGATCTGCTCTGCTGTAATCTCA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGA-CCTG-ATTCGATCTGCTCTACTGTAACCTCA
* ***
75153163 GAGAGATAAGA-CCTGA-TACG
63 GAGAGATAAGATCCTTATTTTA
* * * * * * ** * *
75153183 ATCTACTCTACTATAA-CTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCTACTGTAATCTC
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGA-C-CTGA-TTCGATCTGCTCTACTGTAACCTC
* * * *
75153247 AGGGAGATAGGATTAC-TATCTTCA
62 AGAGAGATAAGA-TCCTTAT-TTTA
* * * * * *
75153271 ATCTGCTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATTCGATCTGCTCTACTGTAACCTCAGAG
75153336 AGATAAGATCCTTTATTTTA
66 AGATAAGATCC-TTATTTTA
* * * * ** * *
75153356 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTCT-CTTCAATCTGCTCCGCTGTAATCGC
1 ATCTGCTCCACTGTAATCTCAGGGAGATA--A-GAC-CTGATTCGATCTGCTCTACTGTAACCTC
* * ***
75153420 AGGGAGATAAGAT-CTGA-TACG
62 AGAGAGATAAGATCCTTATTTTA
* * * * ** * * *
75153441 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGA-CC-TGA-TTCGATCTGCTCTACTGTAACCTC
* * * * *
75153505 AGGGAGATAGGATTACTCT-CTTCA
62 AGAGAGATAAGA-TCCT-TATTTTA
* * * * * *
75153529 ATCTGCTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATTCGATCTGCTCTACTGTAACCTCAGAG
75153594 AGATAAGATCCTTTATTTTA
66 AGATAAGATCC-TTATTTTA
* * * * * * * *
75153614 ATCCGATCCACTATAATCTCAGGGAGATAGGATTACT-ATCTTCAATCTGCTCCATTGTAACCTC
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA--CCTGA--TTCGATCTGCTCTACTGTAACCTC
* * *
75153678 AGGGAGATAAGAT-CTAAAATTCTTCG
62 AGAGAGATAAGATCCT--TATT-TT-A
* * * * * * * *
75153704 GTCTACTCCACTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATTCGATCTGCTCTACTGTAACCTCAGAG
75153769 AGATAAGATCCTTTATTTTA
66 AGATAAGATCC-TTATTTTA
** *
75153789 ATCCCCTCCACTGTAATCTTAGGGAGATA
1 ATCTGCTCCACTGTAATCTCAGGGAGATA
75153818 GGACTACCAG
Statistics
Matches: 915, Mismatches: 259, Indels: 137
0.70 0.20 0.10
Matches are distributed among these distances:
82 2 0.00
83 3 0.00
84 35 0.04
85 302 0.33
86 35 0.04
87 281 0.31
88 139 0.15
89 12 0.01
90 103 0.11
91 3 0.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (84 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATTCGATCTGCTCTACTGTAACCTCAGAG
AGATAAGATCCTTATTTTA
Found at i:75153710 original size:129 final size:129
Alignment explanation
Indices: 75153019--75153692 Score: 1073
Period size: 129 Copynumber: 5.2 Consensus size: 129
75153009 CTTCGGTCTA
* * * * * *
75153019 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGAGAGATA
1 CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
** * * * **
75153084 AGATCCTAAATTTTAATCCGCTCCACTGTAA-CTTTAGGGAGATAGGA-TAGTGTCTTGGATCTG
66 AGATCCTTTATTTTAATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTATCTTCAATCTG
* * * * *
75153147 CTCTGCTGTAATCTCAGAGAGATAAGACCTGATACGATCTACTCTACTATAACTTCAGAGAGATA
1 CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
* *
75153212 AGATCTTTTATTTTAATCCGCTCTACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTG
66 AGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTG
75153276 CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
1 CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
*
75153341 AGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTCTCTTCAATCTG
66 AGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTG
75153405 CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
1 CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
*
75153470 AGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTCTCTTCAATCTG
66 AGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTG
75153534 CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
1 CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
* *
75153599 AGATCCTTTATTTTAATCCGATCCACTATAATCTCAGGGAGATAGGATTACTATCTTCAATCTG
66 AGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTG
** * *
75153663 CTCCATTGTAACCTCAGGGAGATAAGATCT
1 CTCCGCTGTAATCGCAGGGAGATAAGATCT
75153693 AAAATTCTTC
Statistics
Matches: 513, Mismatches: 31, Indels: 3
0.94 0.06 0.01
Matches are distributed among these distances:
128 98 0.19
129 415 0.81
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (129 bp):
CTCCGCTGTAATCGCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTG
Found at i:75153719 original size:46 final size:44
Alignment explanation
Indices: 75152309--75153735 Score: 252
Period size: 44 Copynumber: 32.8 Consensus size: 44
75152299 AGATCTCTGG
* *
75152309 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT-T-AAAAT
** * *
75152355 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCT--GA-
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-TTAAAAT
* * * * * * **
75152397 -TGCGATCTACTCTACTGTAACTTCAGAGAGATGAGATCCT-TTAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT--TAAAAT
* * * ***
75152441 GTT-AATCCACTCCACTGTAACTTCAGGGAGATAAGA-TAGTGT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
** * ** * * ** *
75152483 CTTGGATCTGCTCTGCTGTAATCTTAGGGAGATAAGATCT-CTAG
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT-TAAAAT
* * *
75152527 CTTCAATCTGCTCCACTGTAACCTCGGGGAGATAAGATCTGAAATT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT-T-AAAAT
** * * * *
75152573 CTTCGGTTTACTCCACTGTAACCTCAAGGAGATAAGACCT--GA-
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-TTAAAAT
* * * *
75152615 -TGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCT-AAAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT--TAAAAT
* ** * * * ***
75152659 -TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGA-CAGTGT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
** * * * ****
75152701 CTTGGATCTGCT-CAGCTGTAATCTTAGGGAGATAAGATCT-CTGG
1 CTTCAATCTACTCCA-CTGTAACCTCAGGGAGATAAGAT-TAAAAT
* * * * * *
75152745 CTTCAGTCTGCTCCAATGTAATCTCGGGGAGATAAGATTTGAAATT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-TT-AAAAT
** * *
75152791 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCT--GA-
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-TTAAAAT
* * * * *
75152833 -TGCGATCTACTCTACTGTAACCTTAGAGAGATAAGATCCT-AAAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT--TAAAAT
* ** * * * ***
75152877 -TTTAATCCGCTCCACTATAACTTCAGGGAGATAGGA-TAGTGT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
** * * * ****
75152919 CTTGGATCTGCT-CAGCTGTAATCTCAGAGAGATAAGATCT-CTGG
1 CTTCAATCTACTCCA-CTGTAACCTCAGGGAGATAAGAT-TAAAAT
* * *
75152963 CTTCAATCTGCTCCAAC-GTAATCTCGGGGAGATAAGATCTAAAATT
1 CTTCAATCTACTCC-ACTGTAACCTCAGGGAGATAAGAT-TAAAA-T
** * *
75153009 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCT--GA-
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-TTAAAAT
* * * *
75153051 -TGCGATCTACTCTACTGTAACCTCAGAGAGATAAGATCCT-AAAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT--TAAAAT
* ** * * * ***
75153095 -TTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGA-TAGTGT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
** * ** * * * *
75153137 CTTGGATCTGCTCTGCTGTAATCTCAGAGAGATAAGACCT--GA-
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-TTAAAAT
* * * * * * ***
75153179 -TACGATCTACTCTACTATAACTTCAGAGAGATAAGATCTTTTAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT-TAAAAT
* ** * * * **
75153223 -TTTAATCCGCTCTACTGTAATCTCAGGGAGATAGGATTACTAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
* * * * *
75153266 CTTCAATCTGCTCCGCTGTAATCGCAGGGAGATAAGATCT--GA-
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT-TAAAAT
* * * * * **
75153308 -TACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT--TAAAAT
* ** * * ***
75153352 -TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTCT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
* * * * *
75153395 CTTCAATCTGCTCCGCTGTAATCGCAGGGAGATAAGATCT--GA-
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT-TAAAAT
* * * * * **
75153437 -TACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT--TAAAAT
* ** * * ***
75153481 -TTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTCT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
* * * * *
75153524 CTTCAATCTGCTCCGCTGTAATCGCAGGGAGATAAGATCT--GA-
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT-TAAAAT
* * * * * **
75153566 -TACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTAT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT--TAAAAT
* * * * * **
75153610 -TTTAATCCGA-TCCACTATAATCTCAGGGAGATAGGATTACTAT
1 CTTCAAT-CTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
* *
75153653 CTTCAATCTGCTCCATTGTAACCTCAGGGAGATAAGATCTAAAATT
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAT-TAAAA-T
** *
75153699 CTTCGGTCTACTCCACTGTAACCTTAGGGAGATAAGA
1 CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA
75153736 CCTGATGCGA
Statistics
Matches: 1003, Mismatches: 302, Indels: 152
0.69 0.21 0.10
Matches are distributed among these distances:
41 240 0.24
42 24 0.02
43 123 0.12
44 433 0.43
45 19 0.02
46 164 0.16
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATTAAAAT
Found at i:75153761 original size:175 final size:175
Alignment explanation
Indices: 75153549--75153883 Score: 535
Period size: 175 Copynumber: 1.9 Consensus size: 175
75153539 CTGTAATCGC
*
75153549 AGGGAGATAAGATCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 AGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
* * * * * *
75153614 ATCCGATCCACTATAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCATTGTAACCTCA
66 ATCCCATCCACTATAATCTCAGGGAGATAGGACTACCAGCTTCAATCTGCTCCACTATAACCTCA
75153679 GGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTT
131 GGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTT
* *
75153724 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 AGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
* * * * *
75153789 ATCCCCTCCACTGTAATCTTAGGGAGATAGGACTACCAGCTTCAATCTGCTCCGCTATAATCTCA
66 ATCCCATCCACTATAATCTCAGGGAGATAGGACTACCAGCTTCAATCTGCTCCACTATAACCTCA
*
75153854 GGGAGATAAGATCTGAAATTCTTCGGTCTA
131 GGGAGATAAGATCTAAAATTCTTCGGTCTA
75153884 TTCCCTGGGG
Statistics
Matches: 145, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
175 145 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (175 bp):
AGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
ATCCCATCCACTATAATCTCAGGGAGATAGGACTACCAGCTTCAATCTGCTCCACTATAACCTCA
GGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTGTAACCTT
Found at i:75154637 original size:221 final size:221
Alignment explanation
Indices: 75154254--75154695 Score: 884
Period size: 221 Copynumber: 2.0 Consensus size: 221
75154244 TTATCACAAT
75154254 TCGGGGATATAGGATCTGAACCGTTCTGGTTTCCTACACCATTCTCAGGGTGTCGCACCAAAGTC
1 TCGGGGATATAGGATCTGAACCGTTCTGGTTTCCTACACCATTCTCAGGGTGTCGCACCAAAGTC
75154319 TTATGCGCAAATGAAGGCTCTCTTCTCCGAGGTAACCTTTTCCTATTGCCTGATGATCATTGCTT
66 TTATGCGCAAATGAAGGCTCTCTTCTCCGAGGTAACCTTTTCCTATTGCCTGATGATCATTGCTT
75154384 CCTTGTTCATTTAAGCTTTGTCATTGACACGACATCTTGTCATTTTGTTCAATCAATGCACTTAA
131 CCTTGTTCATTTAAGCTTTGTCATTGACACGACATCTTGTCATTTTGTTCAATCAATGCACTTAA
75154449 CAACATAAATCCAAAGAGAAAGTCTA
196 CAACATAAATCCAAAGAGAAAGTCTA
75154475 TCGGGGATATAGGATCTGAACCGTTCTGGTTTCCTACACCATTCTCAGGGTGTCGCACCAAAGTC
1 TCGGGGATATAGGATCTGAACCGTTCTGGTTTCCTACACCATTCTCAGGGTGTCGCACCAAAGTC
75154540 TTATGCGCAAATGAAGGCTCTCTTCTCCGAGGTAACCTTTTCCTATTGCCTGATGATCATTGCTT
66 TTATGCGCAAATGAAGGCTCTCTTCTCCGAGGTAACCTTTTCCTATTGCCTGATGATCATTGCTT
75154605 CCTTGTTCATTTAAGCTTTGTCATTGACACGACATCTTGTCATTTTGTTCAATCAATGCACTTAA
131 CCTTGTTCATTTAAGCTTTGTCATTGACACGACATCTTGTCATTTTGTTCAATCAATGCACTTAA
75154670 CAACATAAATCCAAAGAGAAAGTCTA
196 CAACATAAATCCAAAGAGAAAGTCTA
75154696 AATTCAAACA
Statistics
Matches: 221, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
221 221 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (221 bp):
TCGGGGATATAGGATCTGAACCGTTCTGGTTTCCTACACCATTCTCAGGGTGTCGCACCAAAGTC
TTATGCGCAAATGAAGGCTCTCTTCTCCGAGGTAACCTTTTCCTATTGCCTGATGATCATTGCTT
CCTTGTTCATTTAAGCTTTGTCATTGACACGACATCTTGTCATTTTGTTCAATCAATGCACTTAA
CAACATAAATCCAAAGAGAAAGTCTA
Found at i:75155344 original size:6 final size:7
Alignment explanation
Indices: 75155330--75155360 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
75155320 TTAGCCTCTC
75155330 CATTTTT
1 CATTTTT
75155337 CA-TTTT
1 CATTTTT
75155343 CATTTTT
1 CATTTTT
75155350 CATTTTT
1 CATTTTT
75155357 CATT
1 CATT
75155361 CTCGTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:75155348 original size:13 final size:14
Alignment explanation
Indices: 75155330--75155360 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
75155320 TTAGCCTCTC
75155330 CATTTTTCA-TTTT
1 CATTTTTCATTTTT
75155343 CATTTTTCATTTTT
1 CATTTTTCATTTTT
75155357 CATT
1 CATT
75155361 CTCGTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (14 bp):
CATTTTTCATTTTT
Found at i:75155376 original size:20 final size:20
Alignment explanation
Indices: 75155330--75155369 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
75155320 TTAGCCTCTC
*
75155330 CATTTTTCATTTTCATTTTT
1 CATTTTTCATTCTCATTTTT
*
75155350 CATTTTTCATTCTCGTTTTT
1 CATTTTTCATTCTCATTTTT
75155370 TGTTTTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.17, G:0.03, T:0.68
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:75156395 original size:12 final size:12
Alignment explanation
Indices: 75156378--75156429 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
75156368 ATTTTGATTT
75156378 TTTTCATTTTTA
1 TTTTCATTTTTA
*
75156390 TTTTCATTTTCA
1 TTTTCATTTTTA
* * *
75156402 TTTTGACTTTGA
1 TTTTCATTTTTA
* *
75156414 TTTTGATTTTTC
1 TTTTCATTTTTA
75156426 TTTT
1 TTTT
75156430 TCTTCCCTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (12 bp):
TTTTCATTTTTA
Found at i:75156399 original size:18 final size:18
Alignment explanation
Indices: 75156378--75156429 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
75156368 ATTTTGATTT
75156378 TTTTCATTTTTATTTTCA
1 TTTTCATTTTTATTTTCA
* * *
75156396 TTTTCATTTTGACTTTGA
1 TTTTCATTTTTATTTTCA
* *
75156414 TTTTGATTTTTCTTTT
1 TTTTCATTTTTATTTT
75156430 TCTTCCCTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (18 bp):
TTTTCATTTTTATTTTCA
Found at i:75160359 original size:99 final size:99
Alignment explanation
Indices: 75160249--75160582 Score: 659
Period size: 99 Copynumber: 3.4 Consensus size: 99
75160239 ACATGATGTC
*
75160249 TCGAATTCCCGAGACGAGAATAAATGCCGAAAATTTATTAGAAAAATCCTCATCTTGAGAAAATG
1 TCGAATTCCCGATACGAGAATAAATGCCGAAAATTTATTAGAAAAATCCTCATCTTGAGAAAATG
75160314 ATGTGTCATATCCAATGCGTTAGGACACAACGTA
66 ATGTGTCATATCCAATGCGTTAGGACACAACGTA
75160348 TCGAATTCCCGATACGAGAATAAATGCCGAAAATTTATTAGAAAAATCCTCATCTTGAGAAAATG
1 TCGAATTCCCGATACGAGAATAAATGCCGAAAATTTATTAGAAAAATCCTCATCTTGAGAAAATG
75160413 ATGTGTCATATCCAATGCGTTAGGACACAACGTA
66 ATGTGTCATATCCAATGCGTTAGGACACAACGTA
75160447 TCGAATTCCCGATACGAGAATAAATGCCGAAAATTTATTAGAAAAATCCTCATCTTGAGAAAATG
1 TCGAATTCCCGATACGAGAATAAATGCCGAAAATTTATTAGAAAAATCCTCATCTTGAGAAAATG
75160512 ATGTGTCATATCCAATGCGTTAGGACACAACGTA
66 ATGTGTCATATCCAATGCGTTAGGACACAACGTA
75160546 TCGAATTCCCGATACGAGAATAAATGCCGAAAATTTA
1 TCGAATTCCCGATACGAGAATAAATGCCGAAAATTTA
75160583 CATATTTAAA
Statistics
Matches: 234, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 234 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (99 bp):
TCGAATTCCCGATACGAGAATAAATGCCGAAAATTTATTAGAAAAATCCTCATCTTGAGAAAATG
ATGTGTCATATCCAATGCGTTAGGACACAACGTA
Found at i:75161168 original size:22 final size:22
Alignment explanation
Indices: 75161118--75161168 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
75161108 AGTGTATATC
* *
75161118 TATATACATATTATAAAACTAT
1 TATATATATATTATAAAACAAT
*
75161140 TAAATATATA-TATAAAA-AAT
1 TATATATATATTATAAAACAAT
75161160 TATATATAT
1 TATATATAT
75161169 GTAAGTATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 10 0.40
21 7 0.28
22 8 0.32
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (22 bp):
TATATATATATTATAAAACAAT
Found at i:75164720 original size:42 final size:42
Alignment explanation
Indices: 75164669--75164750 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
75164659 ATTTAAGGTA
* *
75164669 TATTAAAATATAATTAAAATCAT-TTTGATTATATAATATTTT
1 TATTAAAATATAATTAAAATC-TGTATAATTATATAATATTTT
*
75164711 TATTGAAATATAATTAAAATCTGTATAATTATATAATATT
1 TATTAAAATATAATTAAAATCTGTATAATTATATAATATT
75164751 AATATAAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 1 0.03
42 35 0.97
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (42 bp):
TATTAAAATATAATTAAAATCTGTATAATTATATAATATTTT
Found at i:75168163 original size:16 final size:16
Alignment explanation
Indices: 75168142--75168183 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
75168132 TTATTAAATT
*
75168142 ATATATTTTAATTATA
1 ATATATTTTAATAATA
75168158 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
75168173 AT-TATGTTTAA
1 ATATAT-TTTAA
75168184 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:75168168 original size:15 final size:15
Alignment explanation
Indices: 75168133--75168174 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
75168123 TTAAGAATTT
*
75168133 TATTAAATTAT-ATA
1 TATTTAATTATAATA
75168147 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
75168161 TATTTAATAATAAT
1 TATTTAATTATAAT
75168175 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:75168213 original size:88 final size:87
Alignment explanation
Indices: 75168121--75168390 Score: 237
Period size: 88 Copynumber: 3.2 Consensus size: 87
75168111 GAATATTAAT
*
75168121 TATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 TATTAAGAATCTTATTAAATTATATATTTTAATTATAATATA-TTAATAATAATTATGTTTAAAT
75168186 ATGATTAAATTATTTATTATTGA
65 ATGATTAAATTATTTATTATTGA
* * ** * * *
75168209 TATTAATAATCTTATTAAAATT-TA-A--ATAACAATAACA-A-TAACAATAA-TA-ATTTACCA
1 TATTAAGAATCTTATT-AAATTATATATTTTAATTATAATATATTAATAATAATTATGTTTA--A
* ** *
75168266 A-A--A-TAAATT-TCTGCTAAT--
63 ATATGATTAAATTATTTATTATTGA
* *
75168284 TATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATAATTAATAATAATTATGTTTAAAT
1 TATTAAGAATCTTATTAAATTATATATTTTAATTATAATAT-ATTAATAATAATTATGTTTAAAT
*
75168349 ATGATTAAAATATTTATTATTGA
65 ATGATTAAATTATTTATTATTGA
* *
75168372 TAATAATAATCTTATTAAA
1 TATTAAGAATCTTATTAAA
75168391 ATTTAAATAA
Statistics
Matches: 134, Mismatches: 29, Indels: 38
0.67 0.14 0.19
Matches are distributed among these distances:
74 5 0.04
75 16 0.12
76 1 0.01
77 5 0.04
78 13 0.10
79 1 0.01
80 5 0.04
81 13 0.10
82 13 0.10
83 4 0.03
84 2 0.01
85 13 0.10
86 5 0.04
87 1 0.01
88 32 0.24
89 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (87 bp):
TATTAAGAATCTTATTAAATTATATATTTTAATTATAATATATTAATAATAATTATGTTTAAATA
TGATTAAATTATTTATTATTGA
Found at i:75168299 original size:163 final size:163
Alignment explanation
Indices: 75168117--75168412 Score: 556
Period size: 163 Copynumber: 1.8 Consensus size: 163
75168107 ATAAGAATAT
* *
75168117 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATAATTAATAATAATTATGTTT
* *
75168182 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
75168247 TAACAATAATAATTTACCAAAATAAATTTCTGC
131 TAACAATAATAATTTACCAAAATAAATTTCTGC
75168280 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATAATTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATAATTAATAATAATTATGTTT
75168345 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
75168410 TAA
131 TAA
75168413 TCATTTACCA
Statistics
Matches: 129, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
163 129 1.00
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.45
Consensus pattern (163 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATAATTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAACAATAATAATTTACCAAAATAAATTTCTGC
Found at i:75168312 original size:17 final size:18
Alignment explanation
Indices: 75168292--75168325 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75168282 ATTATTAAGA
*
75168292 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAAATATAT
75168309 ATTTTAATTAAAATATA
1 ATTTTAATTAAAATATA
75168326 ATTAATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTAATTAAAATATAT
Found at i:75168589 original size:16 final size:16
Alignment explanation
Indices: 75168564--75168599 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
75168554 GATTTGCTAT
*
75168564 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
75168580 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
75168596 TACA
1 TACA
75168600 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:75174534 original size:16 final size:16
Alignment explanation
Indices: 75174513--75174547 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
75174503 AGAAAAAAAA
75174513 ATGTTAGTAGTATATT
1 ATGTTAGTAGTATATT
75174529 ATGTTAGTAGTATATT
1 ATGTTAGTAGTATATT
75174545 ATG
1 ATG
75174548 AGGAAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (16 bp):
ATGTTAGTAGTATATT
Found at i:75178778 original size:14 final size:14
Alignment explanation
Indices: 75178754--75178792 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
75178744 CAAAATGTAC
75178754 AATAT-AATTAAAT
1 AATATAAATTAAAT
75178767 AATATAAATTAAAT
1 AATATAAATTAAAT
* *
75178781 TATATAATTTAA
1 AATATAAATTAA
75178793 TTAACTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATATAAATTAAAT
Found at i:75178794 original size:13 final size:13
Alignment explanation
Indices: 75178755--75178795 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
75178745 AAAATGTACA
*
75178755 ATATAATTAAATA
1 ATATAATTAAATT
75178768 ATATAAATTAAATT
1 ATAT-AATTAAATT
*
75178782 ATATAATTTAATT
1 ATATAATTAAATT
75178795 A
1 A
75178796 ACTATTTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATAATTAAATT
Found at i:75182108 original size:21 final size:21
Alignment explanation
Indices: 75182038--75182096 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
75182028 TTTTACGCTG
75182038 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGCTGTAGC
75182059 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGCTGTAGC
*
75182080 CTCTGCTTCTCTCGCTG
1 CTCTGCTTCCCTCGCTG
75182097 CCGCATCTGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.03, C:0.42, G:0.19, T:0.36
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGTAGC
Found at i:75187229 original size:27 final size:27
Alignment explanation
Indices: 75187191--75187244 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
75187181 ACGACTAAAA
75187191 ACCATGATTGTGCATATTAAATGCATC
1 ACCATGATTGTGCATATTAAATGCATC
75187218 ACCATGATTGTGCATATTAAATGCATC
1 ACCATGATTGTGCATATTAAATGCATC
75187245 CCGCAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (27 bp):
ACCATGATTGTGCATATTAAATGCATC
Found at i:75187551 original size:27 final size:27
Alignment explanation
Indices: 75187513--75187566 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
75187503 ACGACTAAAA
75187513 ACCATGATTGTGCATATTAAATGCATC
1 ACCATGATTGTGCATATTAAATGCATC
75187540 ACCATGATTGTGCATATTAAATGCATC
1 ACCATGATTGTGCATATTAAATGCATC
75187567 CCGCAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (27 bp):
ACCATGATTGTGCATATTAAATGCATC
Found at i:75187558 original size:322 final size:322
Alignment explanation
Indices: 75186973--75187616 Score: 1279
Period size: 322 Copynumber: 2.0 Consensus size: 322
75186963 CCACCCTCCC
75186973 AAACATTTTAACTGGAAAAGACGAATGCAGAAAGACATTTTTGAAAATTTTGATCCCTCATATAG
1 AAACATTTTAACTGGAAAAGACGAATGCAGAAAGACATTTTTGAAAATTTTGATCCCTCATATAG
75187038 TTCTTCGTTCATCTAATTAAGTAGCGCATAGAACTTCGTTGCTTCTGCATTCGGCTCTTCATGAG
66 TTCTTCGTTCATCTAATTAAGTAGCGCATAGAACTTCGTTGCTTCTGCATTCGGCTCTTCATGAG
75187103 GTACACTTGTTCCCGGTTCGGTAAAAGCATTTGCACCAACATTACAATCATCAGATGCCATAAAG
131 GTACACTTGTTCCCGGTTCGGTAAAAGCATTTGCACCAACATTACAATCATCAGATGCCATAAAG
75187168 TCAGCTGGGAATGACGACTAAAAACCATGATTGTGCATATTAAATGCATCACCATGATTGTGCAT
196 TCAGCTGGGAATGACGACTAAAAACCATGATTGTGCATATTAAATGCATCACCATGATTGTGCAT
75187233 ATTAAATGCATCCCGCAACATACATTCCATGTCATCCCCTCCAACAAACTGATGGTAAGCAG
261 ATTAAATGCATCCCGCAACATACATTCCATGTCATCCCCTCCAACAAACTGATGGTAAGCAG
75187295 AAACATTTTAACTGGAAAAGACGAATGCAGAAAGACATTTTTGAAAATTTTGATCCCTCATATAG
1 AAACATTTTAACTGGAAAAGACGAATGCAGAAAGACATTTTTGAAAATTTTGATCCCTCATATAG
75187360 TTCTTCGTTCATCTAATTAAGTAGCGCATAGAACTTCGTTGCTTCTGCATTCGGCTCTTCATGAG
66 TTCTTCGTTCATCTAATTAAGTAGCGCATAGAACTTCGTTGCTTCTGCATTCGGCTCTTCATGAG
75187425 GTACACTTGTTCCCGGTTCGGTAAAAGCATTTGCACCAACATTACAATCATCAGATGCCATAAAG
131 GTACACTTGTTCCCGGTTCGGTAAAAGCATTTGCACCAACATTACAATCATCAGATGCCATAAAG
75187490 TCAGCTGGGAATGACGACTAAAAACCATGATTGTGCATATTAAATGCATCACCATGATTGTGCAT
196 TCAGCTGGGAATGACGACTAAAAACCATGATTGTGCATATTAAATGCATCACCATGATTGTGCAT
*
75187555 ATTAAATGCATCCCGCAACATACCTTCCATGTCATCCCCTCCAACAAACTGATGGTAAGCAG
261 ATTAAATGCATCCCGCAACATACATTCCATGTCATCCCCTCCAACAAACTGATGGTAAGCAG
75187617 TACCAGGATA
Statistics
Matches: 321, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
322 321 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (322 bp):
AAACATTTTAACTGGAAAAGACGAATGCAGAAAGACATTTTTGAAAATTTTGATCCCTCATATAG
TTCTTCGTTCATCTAATTAAGTAGCGCATAGAACTTCGTTGCTTCTGCATTCGGCTCTTCATGAG
GTACACTTGTTCCCGGTTCGGTAAAAGCATTTGCACCAACATTACAATCATCAGATGCCATAAAG
TCAGCTGGGAATGACGACTAAAAACCATGATTGTGCATATTAAATGCATCACCATGATTGTGCAT
ATTAAATGCATCCCGCAACATACATTCCATGTCATCCCCTCCAACAAACTGATGGTAAGCAG
Found at i:75187946 original size:9 final size:9
Alignment explanation
Indices: 75187932--75188187 Score: 138
Period size: 9 Copynumber: 30.4 Consensus size: 9
75187922 AATTACACAA
75187932 GTAAGTTAT
1 GTAAGTTAT
75187941 GTAAGTTAT
1 GTAAGTTAT
*
75187950 TTAAGTTAT
1 GTAAGTTAT
*
75187959 GTAAGTTGT
1 GTAAGTTAT
75187968 GT-A-TTAT
1 GTAAGTTAT
*
75187975 GTAAGTTTT
1 GTAAGTTAT
* *
75187984 GTAGGCTAT
1 GTAAGTTAT
*
75187993 GTATA-TTAA
1 GTA-AGTTAT
*
75188002 GTAAGTAAT
1 GTAAGTTAT
75188011 GT-A-TTAT
1 GTAAGTTAT
*
75188018 GTAAGTTGT
1 GTAAGTTAT
*
75188027 GT-A-TAAT
1 GTAAGTTAT
*
75188034 GTTAGTTAT
1 GTAAGTTAT
**
75188043 CAAAGTTAT
1 GTAAGTTAT
75188052 GT-A-TTAT
1 GTAAGTTAT
*
75188059 GTAAGTTGT
1 GTAAGTTAT
75188068 GT-A-TTAT
1 GTAAGTTAT
*
75188075 GTAAGTTTT
1 GTAAGTTAT
* *
75188084 GTAGGCTAT
1 GTAAGTTAT
*
75188093 GTATA-TTAA
1 GTA-AGTTAT
*
75188102 GTAAGTAAT
1 GTAAGTTAT
75188111 GT-A-TTAT
1 GTAAGTTAT
*
75188118 GTAAGTTGT
1 GTAAGTTAT
*
75188127 GT-A-TAAT
1 GTAAGTTAT
*
75188134 GTTAGTTAT
1 GTAAGTTAT
**
75188143 CAAAGTTAT
1 GTAAGTTAT
75188152 GT-A-TTAT
1 GTAAGTTAT
*
75188159 GTAAGTTGT
1 GTAAGTTAT
75188168 GT-A-TTAT
1 GTAAGTTAT
75188175 GTAAGTTAT
1 GTAAGTTAT
75188184 GTAA
1 GTAA
75188188 TTTTTTTCTT
Statistics
Matches: 179, Mismatches: 46, Indels: 44
0.67 0.17 0.16
Matches are distributed among these distances:
7 45 0.25
8 20 0.11
9 114 0.64
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:75188042 original size:25 final size:25
Alignment explanation
Indices: 75188007--75188177 Score: 74
Period size: 25 Copynumber: 7.0 Consensus size: 25
75187997 ATTAAGTAAG
*
75188007 TAATG-TA-TTATGTAAGTTGTGTA
1 TAATGTTAGTTATGTAAGTTATGTA
**
75188030 TAATGTTAGTTATCAAAGTTATGTA
1 TAATGTTAGTTATGTAAGTTATGTA
* * *
75188055 TTATGTAAGTTGTGT-A-TTATGTA
1 TAATGTTAGTTATGTAAGTTATGTA
* * * *
75188078 -AGTTTTGTAGGCTATGTATA-TTAAGTAA
1 TA-ATGT-TA-GTTATGTA-AGTTATGT-A
*
75188106 GTAATG-TA-TTATGTAAGTTGTGTA
1 -TAATGTTAGTTATGTAAGTTATGTA
**
75188130 TAATGTTAGTTATCAAAGTTATGTA
1 TAATGTTAGTTATGTAAGTTATGTA
* * *
75188155 TTATGTAAGTTGTGT-A-TTATGTA
1 TAATGTTAGTTATGTAAGTTATGTA
75188178 AGTTATGTAA
Statistics
Matches: 107, Mismatches: 28, Indels: 26
0.66 0.17 0.16
Matches are distributed among these distances:
23 26 0.24
24 9 0.08
25 61 0.57
27 8 0.07
28 1 0.01
29 1 0.01
30 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.47
Consensus pattern (25 bp):
TAATGTTAGTTATGTAAGTTATGTA
Found at i:75188064 original size:41 final size:41
Alignment explanation
Indices: 75188004--75188081 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
75187994 TATATTAAGT
*
75188004 AAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
1 AAGTAATGTATTATGTAAGTTGTGTATAATGTAAGTTATCA
* *
75188045 AAGTTATGTATTATGTAAGTTGTGTATTATGTAAGTT
1 AAGTAATGTATTATGTAAGTTGTGTATAATGTAAGTT
75188082 TTGTAGGCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (41 bp):
AAGTAATGTATTATGTAAGTTGTGTATAATGTAAGTTATCA
Found at i:75188094 original size:41 final size:41
Alignment explanation
Indices: 75187932--75188129 Score: 148
Period size: 43 Copynumber: 4.7 Consensus size: 41
75187922 AATTACACAA
* * * *
75187932 GTAAGTTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTAT
1 GTAAGTTGTGT-A-TTATGTAAGTTATGTAAGCTATGTATTAT
* * *
75187975 GTAAGTTTTGTAGGCTATGTATA-TTAAGTAAG-TAATGTATTAT
1 GTAAGTTGTGTA--TTATGTA-AGTTATGTAAGCT-ATGTATTAT
* * ** *
75188018 GTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTATTAT
1 GTAAGTTGTGTATTATGTAAGTTATGTAAGCTATGTATTAT
* * *
75188059 GTAAGTTGTGTATTATGTAAGTTTTGTAGGCTATGTATATTAA
1 GTAAGTTGTGTATTATGTAAGTTATGTAAGCTATG--TATTAT
** *
75188102 GTAAGTAATGTATTATGTAAGTTGTGTA
1 GTAAGTTGTGTATTATGTAAGTTATGTA
75188130 TAATGTTAGT
Statistics
Matches: 125, Mismatches: 23, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
40 1 0.01
41 47 0.38
42 3 0.02
43 73 0.58
44 1 0.01
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.46
Consensus pattern (41 bp):
GTAAGTTGTGTATTATGTAAGTTATGTAAGCTATGTATTAT
Found at i:75188110 original size:100 final size:100
Alignment explanation
Indices: 75187955--75188186 Score: 455
Period size: 100 Copynumber: 2.3 Consensus size: 100
75187945 GTTATTTAAG
75187955 TTATGTAAGTTGTGTATTATGTAAGTTTTGTAGGCTATGTATATTAAGTAAGTAATGTATTATGT
1 TTATGTAAGTTGTGTATTATGTAAGTTTTGTAGGCTATGTATATTAAGTAAGTAATGTATTATGT
75188020 AAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
66 AAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
75188055 TTATGTAAGTTGTGTATTATGTAAGTTTTGTAGGCTATGTATATTAAGTAAGTAATGTATTATGT
1 TTATGTAAGTTGTGTATTATGTAAGTTTTGTAGGCTATGTATATTAAGTAAGTAATGTATTATGT
75188120 AAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
66 AAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
*
75188155 TTATGTAAGTTGTGTATTATGTAAGTTATGTA
1 TTATGTAAGTTGTGTATTATGTAAGTTTTGTA
75188187 ATTTTTTTCT
Statistics
Matches: 131, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 131 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (100 bp):
TTATGTAAGTTGTGTATTATGTAAGTTTTGTAGGCTATGTATATTAAGTAAGTAATGTATTATGT
AAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
Found at i:75188158 original size:16 final size:16
Alignment explanation
Indices: 75187937--75188186 Score: 88
Period size: 16 Copynumber: 17.0 Consensus size: 16
75187927 CACAAGTAAG
*
75187937 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
75187954 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
*
75187971 TTATGTAAGTTTTGTA
1 TTATGTAAGTTATGTA
*
75187987 GGCTATGT-A--TAT-TA
1 --TTATGTAAGTTATGTA
*
75188001 --A-GTAAGTAATGTA
1 TTATGTAAGTTATGTA
*
75188014 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
75188030 -TA---ATGTTA-G--
1 TTATGTAAGTTATGTA
**
75188039 TTATCAAAGTTATGTA
1 TTATGTAAGTTATGTA
*
75188055 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
75188071 TTATGTAAGTTTTGTA
1 TTATGTAAGTTATGTA
*
75188087 GGCTATGT-A--TAT-TA
1 --TTATGTAAGTTATGTA
*
75188101 --A-GTAAGTAATGTA
1 TTATGTAAGTTATGTA
*
75188114 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
*
75188130 -TA---ATGTTA-G--
1 TTATGTAAGTTATGTA
**
75188139 TTATCAAAGTTATGTA
1 TTATGTAAGTTATGTA
*
75188155 TTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTA
75188171 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
75188187 ATTTTTTTCT
Statistics
Matches: 173, Mismatches: 27, Indels: 66
0.65 0.10 0.25
Matches are distributed among these distances:
9 4 0.02
10 8 0.05
11 2 0.01
12 12 0.07
13 14 0.08
14 6 0.03
15 10 0.06
16 91 0.53
17 3 0.02
18 23 0.13
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:75188164 original size:41 final size:41
Alignment explanation
Indices: 75188104--75188183 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
75188094 TATATTAAGT
*
75188104 AAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCA
1 AAGTAATGTATTATGTAAGTTGTGTATAATGTAAGTTATCA
* *
75188145 AAGTTATGTATTATGTAAGTTGTGTATTATGTAAGTTAT
1 AAGTAATGTATTATGTAAGTTGTGTATAATGTAAGTTAT
75188184 GTAATTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (41 bp):
AAGTAATGTATTATGTAAGTTGTGTATAATGTAAGTTATCA
Found at i:75189085 original size:12 final size:12
Alignment explanation
Indices: 75189068--75189099 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
75189058 AAAATCTCGC
*
75189068 AAAACAGACTAG
1 AAAACAAACTAG
75189080 AAAACAAACTAG
1 AAAACAAACTAG
75189092 AAAACAAA
1 AAAACAAA
75189100 ACCCAAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.69, C:0.16, G:0.09, T:0.06
Consensus pattern (12 bp):
AAAACAAACTAG
Found at i:75189379 original size:21 final size:21
Alignment explanation
Indices: 75189353--75189398 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
75189343 TGTCCTGCAC
75189353 TTAAAAAAGCCACCAACAATA
1 TTAAAAAAGCCACCAACAATA
75189374 TTAAAAAAGCCACCAACAATA
1 TTAAAAAAGCCACCAACAATA
75189395 TTAA
1 TTAA
75189399 CATTTTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.57, C:0.22, G:0.04, T:0.17
Consensus pattern (21 bp):
TTAAAAAAGCCACCAACAATA
Found at i:75190239 original size:83 final size:85
Alignment explanation
Indices: 75190125--75190353 Score: 207
Period size: 83 Copynumber: 2.7 Consensus size: 85
75190115 AAACAGCACC
* * * * ***
75190125 GTTTTAAGAACCTTAAATATATATTTGCGGCGTTTTTAGCAAAAACGCCACTAAAAATTACCTTA
1 GTTTTAAGAAACTTTAATACATAATTGCGGCGTTTTTAGCAAAAACGCCACTAAAAATTACAAGA
* * *
75190190 -CTGAATAGAAACGGTG-CT
66 CCTGAAGAGAAACAGTGACG
* * * ** * *
75190208 GTTTTAAGAAACTTTAATCCATAGTTCCGGCG-TTTTCCCGAAAAATGCCACT-AAAATTTCAAG
1 GTTTTAAGAAACTTTAATACATAATTGCGGCGTTTTTAGC-AAAAACGCCACTAAAAATTACAAG
*
75190271 ACCTGAAGAGAAACATTGACG
65 ACCTGAAGAGAAACAGTGACG
* * * *
75190292 GTTTGAA-AAACATTAATACATAATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTACA
1 GTTTTAAGAAACTTTAATACATAATTGCGGCGTTTTTAGCAAAAACGCCACTAA-AAATTACA
75190354 CTCCTCTTCT
Statistics
Matches: 112, Mismatches: 28, Indels: 10
0.75 0.19 0.07
Matches are distributed among these distances:
82 13 0.12
83 80 0.71
84 13 0.12
85 6 0.05
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (85 bp):
GTTTTAAGAAACTTTAATACATAATTGCGGCGTTTTTAGCAAAAACGCCACTAAAAATTACAAGA
CCTGAAGAGAAACAGTGACG
Found at i:75190986 original size:112 final size:111
Alignment explanation
Indices: 75190844--75191063 Score: 361
Period size: 112 Copynumber: 2.0 Consensus size: 111
75190834 ATTATAATAC
* * *
75190844 ATATTTGTGGCGTTTTCCCATAAAACGCCACAAATTAAATTAAATTTCTAAAT-GGATATGACGC
1 ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGG-TACGACGC
75190908 CGTTTCCAAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAATGT
65 CGTTT-CAAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAATGT
75190956 ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGGTACGACGCC
1 ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGGTACGACGCC
** *
75191021 GTTTTGAAAAAATGGGTACATAGTTGCGGTGTTTCTACCCAAA
66 GTTTCAAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAA
75191064 CGCCGCTAAT
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
111 36 0.36
112 63 0.62
113 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (111 bp):
ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGGTACGACGCC
GTTTCAAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAATGT
Found at i:75191457 original size:561 final size:561
Alignment explanation
Indices: 75190395--75191516 Score: 2244
Period size: 561 Copynumber: 2.0 Consensus size: 561
75190385 ATTATAATAC
75190395 ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGGTACGACGCC
1 ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGGTACGACGCC
75190460 GTTTTGAAAAAATGGGTACATAGTTGCGGTGTTTCTACCCAAACGCCGCTAATGTTTTTTTTCCT
66 GTTTTGAAAAAATGGGTACATAGTTGCGGTGTTTCTACCCAAACGCCGCTAATGTTTTTTTTCCT
75190525 TATAATGTGGTCCTGCGTAATTGCCAAAATTAAATTCTGAAACAGCACTGTTTTAAGAACCTTCA
131 TATAATGTGGTCCTGCGTAATTGCCAAAATTAAATTCTGAAACAGCACTGTTTTAAGAACCTTCA
75190590 ATATATAGTTGTGGCGTTTTTAGAAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTG
196 ATATATAGTTGTGGCGTTTTTAGAAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTG
75190655 CCGTTTTAAGAAACTTTAATTCATATTTCCGGCGTTTTCCGGAAAAACGCCACTAAAATGTCAAG
261 CCGTTTTAAGAAACTTTAATTCATATTTCCGGCGTTTTCCGGAAAAACGCCACTAAAATGTCAAG
75190720 TCCTGAACTGAAACGGTGACGTTTTGAAAAACATTAATACATCCTTGCGGCGTTTCTAGCATAAA
326 TCCTGAACTGAAACGGTGACGTTTTGAAAAACATTAATACATCCTTGCGGCGTTTCTAGCATAAA
75190785 CGCCACTAATAGATTACACTACTCTTCTGAAACGGGGCCGTTTTGATAAATTATAATACATATTT
391 CGCCACTAATAGATTACACTACTCTTCTGAAACGGGGCCGTTTTGATAAATTATAATACATATTT
75190850 GTGGCGTTTTCCCATAAAACGCCACAAATTAAATTAAATTTCTAAATGGATATGACGCCGTTTCC
456 GTGGCGTTTTCCCATAAAACGCCACAAATTAAATTAAATTTCTAAATGGATATGACGCCGTTTCC
75190915 AAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAATGT
521 AAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAATGT
75190956 ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGGTACGACGCC
1 ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGGTACGACGCC
75191021 GTTTTGAAAAAATGGGTACATAGTTGCGGTGTTTCTACCCAAACGCCGCTAATGTTTTTTTTCCT
66 GTTTTGAAAAAATGGGTACATAGTTGCGGTGTTTCTACCCAAACGCCGCTAATGTTTTTTTTCCT
75191086 TATAATGTGGTCCTGCGTAATTGCCAAAATTAAATTCTGAAACAGCACTGTTTTAAGAACCTTCA
131 TATAATGTGGTCCTGCGTAATTGCCAAAATTAAATTCTGAAACAGCACTGTTTTAAGAACCTTCA
75191151 ATATATAGTTGTGGCGTTTTTAGAAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTG
196 ATATATAGTTGTGGCGTTTTTAGAAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTG
75191216 CCGTTTTAAGAAACTTTAATTCATATTTCCGGCGTTTTCCGGAAAAACGCCACTAAAATGTCAAG
261 CCGTTTTAAGAAACTTTAATTCATATTTCCGGCGTTTTCCGGAAAAACGCCACTAAAATGTCAAG
75191281 TCCTGAACTGAAACGGTGACGTTTTGAAAAACATTAATACATCCTTGCGGCGTTTCTAGCATAAA
326 TCCTGAACTGAAACGGTGACGTTTTGAAAAACATTAATACATCCTTGCGGCGTTTCTAGCATAAA
75191346 CGCCACTAATAGATTACACTACTCTTCTGAAACGGGGCCGTTTTGATAAATTATAATACATATTT
391 CGCCACTAATAGATTACACTACTCTTCTGAAACGGGGCCGTTTTGATAAATTATAATACATATTT
75191411 GTGGCGTTTTCCCATAAAACGCCACAAATTAAATTAAATTTCTAAATGGATATGACGCCGTTTCC
456 GTGGCGTTTTCCCATAAAACGCCACAAATTAAATTAAATTTCTAAATGGATATGACGCCGTTTCC
75191476 AAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAATGT
521 AAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAATGT
75191517 CGCTAATGTT
Statistics
Matches: 561, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
561 561 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (561 bp):
ATATTTATGGCGTTTTCCCAAAAAACGCCACAAATTAAATTAAATTTCTAAATAGGTACGACGCC
GTTTTGAAAAAATGGGTACATAGTTGCGGTGTTTCTACCCAAACGCCGCTAATGTTTTTTTTCCT
TATAATGTGGTCCTGCGTAATTGCCAAAATTAAATTCTGAAACAGCACTGTTTTAAGAACCTTCA
ATATATAGTTGTGGCGTTTTTAGAAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTG
CCGTTTTAAGAAACTTTAATTCATATTTCCGGCGTTTTCCGGAAAAACGCCACTAAAATGTCAAG
TCCTGAACTGAAACGGTGACGTTTTGAAAAACATTAATACATCCTTGCGGCGTTTCTAGCATAAA
CGCCACTAATAGATTACACTACTCTTCTGAAACGGGGCCGTTTTGATAAATTATAATACATATTT
GTGGCGTTTTCCCATAAAACGCCACAAATTAAATTAAATTTCTAAATGGATATGACGCCGTTTCC
AAAAAAATGGGTACATAGTTGCGGCGTTTCTACCCAAATGT
Found at i:75191886 original size:7 final size:7
Alignment explanation
Indices: 75191863--75191900 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
75191853 ATATAATTCT
75191863 TAACCCC
1 TAACCCC
**
75191870 TAACGTC
1 TAACCCC
75191877 TAACCCC
1 TAACCCC
75191884 TAACCCC
1 TAACCCC
75191891 TAACCCC
1 TAACCCC
75191898 TAA
1 TAA
75191901 ACCTTGAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.32, C:0.47, G:0.03, T:0.18
Consensus pattern (7 bp):
TAACCCC
Found at i:75191930 original size:20 final size:21
Alignment explanation
Indices: 75191892--75191932 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75191882 CCTAACCCCT
*
75191892 AACCCCTAAACCTTGAATCCC
1 AACCCCTAAACCATGAATCCC
*
75191913 AACCCTTAAACCAT-AATCCC
1 AACCCCTAAACCATGAATCCC
75191933 TAGTCCCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.37, C:0.41, G:0.02, T:0.20
Consensus pattern (21 bp):
AACCCCTAAACCATGAATCCC
Found at i:75192082 original size:9 final size:9
Alignment explanation
Indices: 75192068--75192092 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
75192058 ATTATATAAG
75192068 AAAATATTT
1 AAAATATTT
75192077 AAAATATTT
1 AAAATATTT
75192086 AAAATAT
1 AAAATAT
75192093 AAATTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AAAATATTT
Found at i:75192969 original size:41 final size:42
Alignment explanation
Indices: 75192844--75193083 Score: 258
Period size: 41 Copynumber: 5.8 Consensus size: 42
75192834 TAAAATGTCC
* * **
75192844 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAGACCCTAGCA
1 TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAGGCCAAAGCA
* * *
75192886 TTAGCGGTGCTTTTCCAGAAAATGCCGCTAAAGGCCAAAGCA
1 TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAGGCCAAAGCA
*
75192928 TTAGCGGCGCTTTTACA-AAAACGCTGCTAAAGGCCAAAGCA
1 TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAGGCCAAAGCA
* * * * *
75192969 TTAGCGGCACTTTTTCA-AAAACGCCGCTAAAGCCCATAGAA
1 TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAGGCCAAAGCA
* *
75193010 TTAGCGGCGCTTATT-TA-AAAACGCCGCTAAA-GCCTACAGCA
1 TTAGCGGCGCTT-TTACAGAAAACGCCGCTAAAGGCC-AAAGCA
* *
75193051 TTAGCGGCACTTCTTA-ATAAAACGCCGCTAAAG
1 TTAGCGGCGCTT-TTACAGAAAACGCCGCTAAAG
75193084 ACCCGAAAGG
Statistics
Matches: 171, Mismatches: 22, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
40 2 0.01
41 101 0.59
42 68 0.40
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.21
Consensus pattern (42 bp):
TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAGGCCAAAGCA
Found at i:75193435 original size:18 final size:16
Alignment explanation
Indices: 75193404--75193454 Score: 50
Period size: 18 Copynumber: 3.1 Consensus size: 16
75193394 ATAAATTATG
* *
75193404 AAATTTAAATATATTA
1 AAATTAAAAAATATTA
75193420 AAATTGAAATAAATATTA
1 AAATT-AAA-AAATATTA
*
75193438 ATATTAAAAAA-ATTA
1 AAATTAAAAAATATTA
75193453 AA
1 AA
75193455 TCTTATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 5 0.17
16 8 0.28
17 5 0.17
18 11 0.38
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (16 bp):
AAATTAAAAAATATTA
Found at i:75200041 original size:17 final size:17
Alignment explanation
Indices: 75200019--75200051 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75200009 AATACAGTAC
75200019 ATTTCTATGGTTGTTTT
1 ATTTCTATGGTTGTTTT
*
75200036 ATTTCTGTGGTTGTTT
1 ATTTCTATGGTTGTTT
75200052 GCCAATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.21, T:0.64
Consensus pattern (17 bp):
ATTTCTATGGTTGTTTT
Found at i:75200182 original size:4 final size:4
Alignment explanation
Indices: 75200173--75200300 Score: 123
Period size: 4 Copynumber: 31.8 Consensus size: 4
75200163 TTATTCTAAT
75200173 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
* * * * * * * * * *
75200221 TCTC ACTC TCTC TCAC ACTC ACTC ACTC ACTC ACTC ACTC ACTC ACTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
* *
75200269 TCTC ATCTC TTTC TAAT- TCTC TCTC TCTC TCT
1 TCTC -TCTC TCTC T-CTC TCTC TCTC TCTC TCT
75200301 TAAACTTGAT
Statistics
Matches: 112, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
3 1 0.01
4 106 0.95
5 5 0.04
ACGTcount: A:0.10, C:0.47, G:0.00, T:0.43
Consensus pattern (4 bp):
TCTC
Found at i:75204750 original size:12 final size:12
Alignment explanation
Indices: 75204729--75204758 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
75204719 GCAAATGAAT
*
75204729 CATTTCTATTTC
1 CATTTTTATTTC
75204741 CATTTTTATTTC
1 CATTTTTATTTC
75204753 CATTTT
1 CATTTT
75204759 GGAAACCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.63
Consensus pattern (12 bp):
CATTTTTATTTC
Found at i:75207099 original size:72 final size:72
Alignment explanation
Indices: 75206965--75207101 Score: 175
Period size: 72 Copynumber: 1.9 Consensus size: 72
75206955 TGCCCTGTCA
* **
75206965 TTTGCTTAAATCATCAAAAGAAGGATTTTCAACTTAACAAGCTTTTTTTTTTCTTTTTCTTTTGC
1 TTTGCTTAAATCATCAAAAGAAGGATTTTCAACTTAACAAGCTTTTTTTTTTCTCTAACTTTTGC
75207030 ACTAACT
66 ACTAACT
* * * * * * **
75207037 TTTGCTTAAGTCGTCTAATGAAGGATTTTTAGCTTAATGAGCTTTTTTTTTTCTCTAACTTTTGC
1 TTTGCTTAAATCATCAAAAGAAGGATTTTCAACTTAACAAGCTTTTTTTTTTCTCTAACTTTTGC
75207102 TTGAGCCATC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
72 54 1.00
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.49
Consensus pattern (72 bp):
TTTGCTTAAATCATCAAAAGAAGGATTTTCAACTTAACAAGCTTTTTTTTTTCTCTAACTTTTGC
ACTAACT
Found at i:75207117 original size:60 final size:61
Alignment explanation
Indices: 75207016--75207202 Score: 160
Period size: 60 Copynumber: 2.9 Consensus size: 61
75207006 CTTTTTTTTT
* * * * * *
75207016 TCTTTTTCTTTTGCACTAACTTTTGCTTAAGTCGTCTAATGAAGGATTTTTAGCTTAATGAG
1 TCTTTTT-TTTTTCTCTAACTTTTGCTTGAGCCATCCAATGAAGGATTTTTAGCTTAATGAG
* * * * *
75207078 -CTTTTTTTTTTCTCTAACTTTTGCTTGAGCCATCCAATGAAGTATATTCAACTTAATTAG
1 TCTTTTTTTTTTCTCTAACTTTTGCTTGAGCCATCCAATGAAGGATTTTTAGCTTAATGAG
* * *
75207138 CTCTTCTTCTTTTCTTTATGCTCTAACTTTTTCTTGAGCTATCCAAAGAAGGATTTTTAGCTTAA
1 ----TCTT-TTTT-TTT-T-CTCTAACTTTTGCTTGAGCCATCCAATGAAGGATTTTTAGCTTAA
75207203 CAAAATTTTG
Statistics
Matches: 98, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
60 43 0.44
61 6 0.06
65 3 0.03
66 4 0.04
67 3 0.03
68 1 0.01
69 38 0.39
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (61 bp):
TCTTTTTTTTTTCTCTAACTTTTGCTTGAGCCATCCAATGAAGGATTTTTAGCTTAATGAG
Found at i:75215177 original size:16 final size:16
Alignment explanation
Indices: 75215158--75215190 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
75215148 ATGAATAGAG
75215158 TCTGGCTTGGTAAGGA
1 TCTGGCTTGGTAAGGA
75215174 TCTGGCTTGGTAAGGA
1 TCTGGCTTGGTAAGGA
75215190 T
1 T
75215191 GGCTTAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.36, T:0.33
Consensus pattern (16 bp):
TCTGGCTTGGTAAGGA
Found at i:75217521 original size:14 final size:13
Alignment explanation
Indices: 75217484--75217525 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
75217474 AGGATTAGTG
75217484 ATTAA-TTAATTA
1 ATTAAGTTAATTA
75217496 TGATTAAGTTAATTA
1 --ATTAAGTTAATTA
75217511 ATTAAGTTTAATTA
1 ATTAAG-TTAATTA
75217525 A
1 A
75217526 AACTAAACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.23
14 13 0.50
15 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
ATTAAGTTAATTA
Found at i:75217521 original size:19 final size:18
Alignment explanation
Indices: 75217484--75217525 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
75217474 AGGATTAGTG
*
75217484 ATTAATTAATTATGATTA
1 ATTAATTAATTAAGATTA
*
75217502 AGTTAATTAATTAAGTTTA
1 A-TTAATTAATTAAGATTA
75217521 ATTAA
1 ATTAA
75217526 AACTAAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (18 bp):
ATTAATTAATTAAGATTA
Found at i:75220613 original size:13 final size:13
Alignment explanation
Indices: 75220577--75220616 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
75220567 AGTTTGGCAA
75220577 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
75220590 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
75220603 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
75220616 T
1 T
75220617 TTGGTTTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 2 0.09
13 19 0.83
14 2 0.09
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:75224642 original size:49 final size:49
Alignment explanation
Indices: 75224589--75224698 Score: 118
Period size: 50 Copynumber: 2.2 Consensus size: 49
75224579 GAAAACCAGA
*
75224589 TAAAACATAAACCTTAAAACCTAAAG-TTATGGAAA-AT-AAGACTAAACCC
1 TAAAACATAAACATTAAAACCT-AAGTTTAT--AAAGATGAAGACTAAACCC
* * *
75224638 TAAAAATATAAACATTAAACCCTAAGTTTATAAAGATGAAGACTAAACCT
1 T-AAAACATAAACATTAAAACCTAAGTTTATAAAGATGAAGACTAAACCC
*
75224688 TAAAAGATAAA
1 TAAAACATAAA
75224699 GAAAAAATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
48 3 0.06
49 15 0.29
50 34 0.65
ACGTcount: A:0.55, C:0.15, G:0.08, T:0.23
Consensus pattern (49 bp):
TAAAACATAAACATTAAAACCTAAGTTTATAAAGATGAAGACTAAACCC
Found at i:75227485 original size:27 final size:26
Alignment explanation
Indices: 75227436--75227487 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
75227426 TTTAAAAAAA
*
75227436 TTAAAATTATTAAAATATTATATTTT
1 TTAAAATTATTAAAATATCATATTTT
75227462 TTAAATATTATTAAACATA-CATATTT
1 TTAAA-ATTATTAAA-ATATCATATTT
75227488 AATTATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 15 0.65
28 3 0.13
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (26 bp):
TTAAAATTATTAAAATATCATATTTT
Found at i:75227536 original size:22 final size:22
Alignment explanation
Indices: 75227511--75227554 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
75227501 TAGCCATATA
*
75227511 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAAAATAATAAAT
75227533 ATAAATTATTAAAATAATAAAT
1 ATAAATTATTAAAATAATAAAT
75227555 TATTTAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
ATAAATTATTAAAATAATAAAT
Found at i:75227554 original size:16 final size:15
Alignment explanation
Indices: 75227529--75227558 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75227519 TTAATATAAT
75227529 AAATATAAATTATTA
1 AAATATAAATTATTA
75227544 AAATAATAAATTATT
1 AAAT-ATAAATTATT
75227559 TAATATTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAATATAAATTATTA
Found at i:75227614 original size:16 final size:16
Alignment explanation
Indices: 75227578--75227607 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75227568 AATTTTATTT
75227578 CAATAATAACTTTTAA
1 CAATAATAACTTTTAA
75227594 CAATAATAA-TTTTA
1 CAATAATAACTTTTA
75227608 GATAATATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (16 bp):
CAATAATAACTTTTAA
Found at i:75227676 original size:19 final size:19
Alignment explanation
Indices: 75227649--75227696 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
75227639 TCAATATTAA
*
75227649 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
* *
75227668 TATTATAATTACAAATATT
1 TATTATAATAATAAATATT
75227687 TA--ATAATAAT
1 TATTATAATAAT
75227697 TTTTTTTGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 6 0.25
19 18 0.75
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:75231164 original size:24 final size:24
Alignment explanation
Indices: 75231137--75231188 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
75231127 TTAGTAAGTC
*
75231137 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
75231161 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
75231185 AAAT
1 AAAT
75231189 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:75233785 original size:27 final size:28
Alignment explanation
Indices: 75233739--75233793 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
75233729 TTTCTCTTGT
75233739 TAAAAAAATTATAAATATTTGTAT-TTTA
1 TAAAAAAATTATAAATATTT-TATATTTA
75233767 TAAAAAAATCT-TAAA-ATTTTATATTTA
1 TAAAAAAAT-TATAAATATTTTATATTTA
75233794 ATTACTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 3 0.12
27 8 0.32
28 13 0.52
29 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (28 bp):
TAAAAAAATTATAAATATTTTATATTTA
Found at i:75234631 original size:19 final size:19
Alignment explanation
Indices: 75234609--75234653 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
75234599 TACCATTTCG
*
75234609 TTATTATATTACTACTATT
1 TTATTATATAACTACTATT
* * *
75234628 TTATTGTATAACTATTGTT
1 TTATTATATAACTACTATT
75234647 TTATTAT
1 TTATTAT
75234654 TAATTTTACT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (19 bp):
TTATTATATAACTACTATT
Found at i:75235140 original size:27 final size:28
Alignment explanation
Indices: 75235074--75235149 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 28
75235064 TGAATTATTG
** * *
75235074 TTAAAAATATTTAAAT-ATTAATTTTCA
1 TTAAAAATATTTTTATAATTAAATTTAA
*
75235101 TT-AATATATTTTTATAATTAAATTTAA
1 TTAAAAATATTTTTATAATTAAATTTAA
75235128 TTAAAAATATTTTTACTAATTA
1 TTAAAAATATTTTTA-TAATTA
75235150 GACAGCAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 10 0.25
27 13 0.32
28 11 0.28
29 6 0.15
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (28 bp):
TTAAAAATATTTTTATAATTAAATTTAA
Found at i:75250347 original size:29 final size:29
Alignment explanation
Indices: 75250294--75250350 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
75250284 TATAACTTTT
*
75250294 TTTTATTTATCAAAATATTATAAAAAAAA
1 TTTTATTTATCAAAATATTACAAAAAAAA
*
75250323 TTTTATTTATCAAAATA-TACCAAAAAAA
1 TTTTATTTATCAAAATATTACAAAAAAAA
75250351 CAAAAAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (29 bp):
TTTTATTTATCAAAATATTACAAAAAAAA
Found at i:75250841 original size:18 final size:19
Alignment explanation
Indices: 75250802--75250860 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
75250792 ATTTTATATT
75250802 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
75250821 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
* *
75250839 TTAAATTAAAATAGAATTA
1 TTAAATGAAAATAGAGTTA
75250858 TTA
1 TTA
75250861 GTTTATTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:75250862 original size:27 final size:27
Alignment explanation
Indices: 75250832--75250887 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
75250822 TAAATGAGAA
75250832 TAGTTTATTAAATTAAAATAGAATTAT
1 TAGTTTATTAAATTAAAATAGAATTAT
*
75250859 TAGTTTATTAAATTAAAATAGAGTTAT
1 TAGTTTATTAAATTAAAATAGAATTAT
75250886 TA
1 TA
75250888 CTTAATTAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.45
Consensus pattern (27 bp):
TAGTTTATTAAATTAAAATAGAATTAT
Found at i:75250895 original size:27 final size:27
Alignment explanation
Indices: 75250838--75250900 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
75250828 AGAATAGTTT
* *
75250838 ATTAAATTAAAATAGAATTATTAGTTT
1 ATTAAATTAAAATAGAATTATTACTTA
*
75250865 ATTAAATTAAAATAGAGTTATTACTTA
1 ATTAAATTAAAATAGAATTATTACTTA
75250892 ATTAGAATT
1 ATTA-AATT
75250901 CTAAGTATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.43
Consensus pattern (27 bp):
ATTAAATTAAAATAGAATTATTACTTA
Found at i:75251414 original size:37 final size:39
Alignment explanation
Indices: 75251373--75251446 Score: 116
Period size: 37 Copynumber: 1.9 Consensus size: 39
75251363 GTTTACTTTC
* *
75251373 AAAATTTAAAATGGTAAA-TTT-CATGTTAGGTCCTTAA
1 AAAATTCAAAATGGTAAATTTTGCATGTCAGGTCCTTAA
75251410 AAAATTCAAAATGGTAAATTTTGCATGTCAGGTCCTT
1 AAAATTCAAAATGGTAAATTTTGCATGTCAGGTCCTT
75251447 GAAACTACCC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
37 17 0.52
38 3 0.09
39 13 0.39
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (39 bp):
AAAATTCAAAATGGTAAATTTTGCATGTCAGGTCCTTAA
Found at i:75251637 original size:26 final size:27
Alignment explanation
Indices: 75251586--75251648 Score: 119
Period size: 26 Copynumber: 2.4 Consensus size: 27
75251576 TTTTTTTGGT
75251586 ATATTTTGGTAAATAAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
75251613 ATATTTTGGTAAAT-AAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
75251639 ATATTTTGGT
1 ATATTTTGGT
75251649 TATTTTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 22 0.61
27 14 0.39
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAATTATA
Found at i:75252138 original size:11 final size:11
Alignment explanation
Indices: 75252122--75252168 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
75252112 TGAAAATAAT
75252122 AAATAATATTA
1 AAATAATATTA
75252133 AAATAATATT-
1 AAATAATATTA
* *
75252143 GAATAAT-GTA
1 AAATAATATTA
75252153 AACATAATATTA
1 AA-ATAATATTA
75252165 AAAT
1 AAAT
75252169 TTTTATACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
9 1 0.03
10 7 0.24
11 17 0.59
12 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (11 bp):
AAATAATATTA
Found at i:75252341 original size:20 final size:20
Alignment explanation
Indices: 75252303--75252340 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
75252293 TTTTACAATT
75252303 TATATGATTTTTAGATTTTA
1 TATATGATTTTTAGATTTTA
*
75252323 TATAT-ATTTTTATATTTT
1 TATATGATTTTTAGATTTT
75252341 TTAATGTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
TATATGATTTTTAGATTTTA
Found at i:75258728 original size:11 final size:11
Alignment explanation
Indices: 75258714--75258815 Score: 85
Period size: 11 Copynumber: 9.8 Consensus size: 11
75258704 TAAAAAAAGC
75258714 ATTTTAAAAAT
1 ATTTTAAAAAT
75258725 ATTTT--AAA-
1 ATTTTAAAAAT
*
75258733 A-TTTAAAAAA
1 ATTTTAAAAAT
75258743 ATTTTAAAAAGT
1 ATTTTAAAAA-T
75258755 ATTTTAAAAAT
1 ATTTTAAAAAT
75258766 ATTTT--AAA-
1 ATTTTAAAAAT
*
75258774 A-TTAAAAAAT
1 ATTTTAAAAAT
* **
75258784 AATAAAAAAAGT
1 ATTTTAAAAA-T
75258796 ATTTTAAAAAT
1 ATTTTAAAAAT
75258807 ATTTTAAAA
1 ATTTTAAAA
75258816 TTAAAAAAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 20
0.74 0.06 0.20
Matches are distributed among these distances:
7 5 0.07
8 2 0.03
9 12 0.16
10 2 0.03
11 36 0.48
12 18 0.24
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
ATTTTAAAAAT
Found at i:75258729 original size:32 final size:31
Alignment explanation
Indices: 75258692--75258765 Score: 107
Period size: 31 Copynumber: 2.4 Consensus size: 31
75258682 ACCAAAAATT
75258692 TATTTTAAAAATTAAAAAAAGCATTTTAAAAA-
1 TATTTTAAAAATTAAAAAAA--ATTTTAAAAAG
*
75258724 TATTTT-AAAATTTAAAAAAATTTTAAAAAG
1 TATTTTAAAAATTAAAAAAAATTTTAAAAAG
75258754 TATTTTAAAAAT
1 TATTTTAAAAAT
75258766 ATTTTAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
29 10 0.26
30 6 0.15
31 17 0.44
32 6 0.15
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (31 bp):
TATTTTAAAAATTAAAAAAAATTTTAAAAAG
Found at i:75258821 original size:17 final size:17
Alignment explanation
Indices: 75258799--75258844 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
75258789 AAAAAGTATT
75258799 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
* *
75258816 TTAAAAAAAATTTAAAA
1 TTAAAAATATTTTAAAA
* *
75258833 ATAAATATATTT
1 TTAAAAATATTT
75258845 ATTATATCGG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:75258833 original size:41 final size:41
Alignment explanation
Indices: 75258698--75258833 Score: 211
Period size: 41 Copynumber: 3.3 Consensus size: 41
75258688 AATTTATTTT
* *
75258698 AAAAATTAAAAAAAGCATTTTAAAAATATTTTAAAATTTAA
1 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
**
75258739 AAAAATTTTAAAAAGTATTTTAAAAATATTTTAAAATTAAA
1 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
75258780 AAATAA-TAAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
1 AAA-AATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
*
75258821 AAAAATTTAAAAA
1 AAAAATTAAAAAA
75258834 TAAATATATT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 2 0.02
41 82 0.95
42 2 0.02
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (41 bp):
AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAA
Found at i:75259484 original size:28 final size:28
Alignment explanation
Indices: 75259448--75259524 Score: 73
Period size: 33 Copynumber: 2.6 Consensus size: 28
75259438 TGCCATTTTT
*
75259448 TAGGGTTTAGGGTTTTGCTTATTTAAAG
1 TAGGATTTAGGGTTTTGCTTATTTAAAG
* *
75259476 TAGGTTTTAGGTTAATGTTTTGTTTATTTAAAG
1 TAGGATTTAGG-----GTTTTGCTTATTTAAAG
*
75259509 TAAGATTTAGGGTTTT
1 TAGGATTTAGGGTTTT
75259525 TTTAGATTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
28 15 0.38
33 25 0.62
ACGTcount: A:0.23, C:0.01, G:0.25, T:0.51
Consensus pattern (28 bp):
TAGGATTTAGGGTTTTGCTTATTTAAAG
Found at i:75262080 original size:25 final size:24
Alignment explanation
Indices: 75262047--75262123 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 24
75262037 TATCATTTCT
*
75262047 GCTCTTTCGAGCCATGATTGGTAA
1 GCTCTTTCGAGCCATGAATGGTAA
* *
75262071 GCTCATTTCGAGCTGAAGAATGGTAA
1 GCTC-TTTCGAGC-CATGAATGGTAA
*
75262097 GCTCTATCGAG-C-TGAAATGGTAA
1 GCTCTTTCGAGCCATG-AATGGTAA
75262120 GCTC
1 GCTC
75262124 ATAAGAGCTG
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
22 1 0.02
23 12 0.27
24 4 0.09
25 14 0.32
26 13 0.30
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (24 bp):
GCTCTTTCGAGCCATGAATGGTAA
Found at i:75262098 original size:26 final size:24
Alignment explanation
Indices: 75262065--75262152 Score: 99
Period size: 26 Copynumber: 3.5 Consensus size: 24
75262055 GAGCCATGAT
*
75262065 TGGTAAGCTCATTTCGAGCTGAAGAA
1 TGGTAAGCTCATATCGAGCTG-A-AA
75262091 TGGTAAGCTC-TATCGAGCTGAAA
1 TGGTAAGCTCATATCGAGCTGAAA
*
75262114 TGGTAAGCTCATA-AGAGCTGATATA
1 TGGTAAGCTCATATCGAGCTGA-A-A
75262139 TCGGTAAGCTCATA
1 T-GGTAAGCTCATA
75262153 CAAGTTGTGG
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
23 19 0.34
24 4 0.07
25 11 0.20
26 22 0.39
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (24 bp):
TGGTAAGCTCATATCGAGCTGAAA
Found at i:75262119 original size:23 final size:24
Alignment explanation
Indices: 75262065--75262149 Score: 84
Period size: 23 Copynumber: 3.4 Consensus size: 24
75262055 GAGCCATGAT
*
75262065 TGGTAAGCTCATTTCGAGCTGAAGAA
1 TGGTAAGCTC-TATCGAGCTG-AGAA
75262091 TGGTAAGCTCTATCGAGCTGA-AA
1 TGGTAAGCTCTATCGAGCTGAGAA
* *
75262114 TGGTAAGCTC-ATAAGAGCTGATATA
1 TGGTAAGCTCTAT-CGAGCTGAGA-A
75262139 TCGGTAAGCTC
1 T-GGTAAGCTC
75262150 ATACAAGTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
22 2 0.04
23 19 0.36
24 2 0.04
25 11 0.21
26 19 0.36
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (24 bp):
TGGTAAGCTCTATCGAGCTGAGAA
Found at i:75267528 original size:13 final size:13
Alignment explanation
Indices: 75267486--75267568 Score: 69
Period size: 13 Copynumber: 6.3 Consensus size: 13
75267476 TCATACATCT
75267486 ATTTCCATATAATC
1 ATTT-CATATAATC
* * *
75267500 AATTCACATAACC
1 ATTTCATATAATC
* *
75267513 ATTTCATTTATTC
1 ATTTCATATAATC
*
75267526 ATTTTATATAATC
1 ATTTCATATAATC
* *
75267539 ATTTCGTACAA-C
1 ATTTCATATAATC
75267551 TATTTCATATAATC
1 -ATTTCATATAATC
75267565 ATTT
1 ATTT
75267569 TATTTCACAC
Statistics
Matches: 51, Mismatches: 16, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
12 1 0.02
13 46 0.90
14 4 0.08
ACGTcount: A:0.35, C:0.18, G:0.01, T:0.46
Consensus pattern (13 bp):
ATTTCATATAATC
Found at i:75267535 original size:39 final size:39
Alignment explanation
Indices: 75267492--75267571 Score: 97
Period size: 39 Copynumber: 2.1 Consensus size: 39
75267482 ATCTATTTCC
* * *
75267492 ATATAATCAATTCACATAACCATTTCATTTATTCATTTT
1 ATATAATCAATTCACACAACCATTTCATATAATCATTTT
* ** *
75267531 ATATAATCATTTCGTACAACTATTTCATATAATCATTTT
1 ATATAATCAATTCACACAACCATTTCATATAATCATTTT
75267570 AT
1 AT
75267572 TTCACACATT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.01, T:0.46
Consensus pattern (39 bp):
ATATAATCAATTCACACAACCATTTCATATAATCATTTT
Found at i:75267807 original size:45 final size:45
Alignment explanation
Indices: 75267743--75267913 Score: 215
Period size: 45 Copynumber: 3.8 Consensus size: 45
75267733 CAATTGTTCA
** * * *
75267743 ATGA-TGCCATAGCATCTTTCAACCATGGTCATATTTATTTCCGAC
1 ATGAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCG-C
75267788 ATGA-TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGGC
1 ATGAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCC-GC
*
75267833 AT-AGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCTG-
1 ATGAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGC
* *
75267876 GTGTAGTGCCATAGTGTCTTTCAAATATGGTCTTATTC
1 ATG-AGTGCCATAGTGTCTTTCAACTATGGTCTTATTC
75267914 GTTTTTCAAG
Statistics
Matches: 114, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 110 0.96
46 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.40
Consensus pattern (45 bp):
ATGAGTGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCGC
Found at i:75276749 original size:115 final size:115
Alignment explanation
Indices: 75276547--75276775 Score: 449
Period size: 115 Copynumber: 2.0 Consensus size: 115
75276537 AATCAAGATT
75276547 TCAATCTTGGTCCAAGAAACCGAATCTTGTAGCCAAAACGCATTGGATCTCCGTTACGAGCATCA
1 TCAATCTTGGTCCAAGAAACCGAATCTTGTAGCCAAAACGCATTGGATCTCCGTTACGAGCATCA
*
75276612 ACGACCCAATTTCGGTAAAAGATGGATCACAAGCCCAAATTCTTGAAGGC
66 ACGACCCAATTTCGGTAAAAGATGGATCACAAGCCCAAATTCTTAAAGGC
75276662 TCAATCTTGGTCCAAGAAACCGAATCTTGTAGCCAAAACGCATTGGATCTCCGTTACGAGCATCA
1 TCAATCTTGGTCCAAGAAACCGAATCTTGTAGCCAAAACGCATTGGATCTCCGTTACGAGCATCA
75276727 ACGACCCAATTTCGGTAAAAGATGGATCACAAGCCCAAATTCTTAAAGG
66 ACGACCCAATTTCGGTAAAAGATGGATCACAAGCCCAAATTCTTAAAGG
75276776 TGAGGCCCAA
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 113 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.23
Consensus pattern (115 bp):
TCAATCTTGGTCCAAGAAACCGAATCTTGTAGCCAAAACGCATTGGATCTCCGTTACGAGCATCA
ACGACCCAATTTCGGTAAAAGATGGATCACAAGCCCAAATTCTTAAAGGC
Found at i:75280105 original size:18 final size:17
Alignment explanation
Indices: 75280049--75280105 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 17
75280039 AACACACTCA
75280049 ATTTTTCACATTCTTTTTC
1 ATTTTTCAC-TTC-TTTTC
*
75280068 -TTTTTCA-TTGTTTTC
1 ATTTTTCACTTCTTTTC
*
75280083 TTTTTTCACTCTCTTTTC
1 ATTTTTCACT-TCTTTTC
75280101 ATTTT
1 ATTTT
75280106 CTTTTACAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
15 5 0.16
16 9 0.28
17 1 0.03
18 17 0.53
ACGTcount: A:0.11, C:0.19, G:0.02, T:0.68
Consensus pattern (17 bp):
ATTTTTCACTTCTTTTC
Found at i:75291095 original size:20 final size:20
Alignment explanation
Indices: 75291067--75291105 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
75291057 ATAATATCTA
*
75291067 GCGTTGATGCATCTTCGTGG
1 GCGTCGATGCATCTTCGTGG
75291087 GCGTCGATGCATCTTCGTG
1 GCGTCGATGCATCTTCGTG
75291106 ATCGCGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.23, G:0.33, T:0.33
Consensus pattern (20 bp):
GCGTCGATGCATCTTCGTGG
Found at i:75293939 original size:51 final size:51
Alignment explanation
Indices: 75293884--75294018 Score: 182
Period size: 51 Copynumber: 2.6 Consensus size: 51
75293874 AAAGTGATGG
*
75293884 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGT-TTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTAAT-GA
* * * * *
75293935 TCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTATCGGATGGTAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTAATGA
* *
75293986 TCACATGCGTAGTACTATGTGCAGGCTACTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
75294019 TGAACCAAAC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
51 72 0.99
52 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGATAGTAATGA
Found at i:75294078 original size:45 final size:45
Alignment explanation
Indices: 75294027--75294115 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
75294017 TGTGAACCAA
* *
75294027 ACATCATTGATTAGTAAGGCGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCACCGG
*
75294072 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCACCG
75294116 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGCGGTTGCTATGTGCTGAATCCACCGG
Found at i:75301720 original size:13 final size:13
Alignment explanation
Indices: 75301702--75301727 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75301692 TAACCGTTAA
75301702 TTTTATTTTTTAT
1 TTTTATTTTTTAT
75301715 TTTTATTTTTTAT
1 TTTTATTTTTTAT
75301728 AAGTTTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:75302549 original size:35 final size:35
Alignment explanation
Indices: 75302503--75302573 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
75302493 CCTATGCATT
75302503 CCAGCTGTATTCAATGGGTCCACAATAAACAATTG
1 CCAGCTGTATTCAATGGGTCCACAATAAACAATTG
75302538 CCAGCTGTATTCAATGGGTCCACAATAAACAATTG
1 CCAGCTGTATTCAATGGGTCCACAATAAACAATTG
75302573 C
1 C
75302574 TTGGTTTGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (35 bp):
CCAGCTGTATTCAATGGGTCCACAATAAACAATTG
Found at i:75304605 original size:22 final size:21
Alignment explanation
Indices: 75304555--75304661 Score: 79
Period size: 20 Copynumber: 5.4 Consensus size: 21
75304545 CACATTACTT
75304555 ATAATATTTATTATTTTATAA
1 ATAATATTTATTATTTTATAA
75304576 A-AATATTTATTATCTTGTA-AA
1 ATAATATTTATTAT-TT-TATAA
*
75304597 ATAATA-TT-TT-TTTGAT-A
1 ATAATATTTATTATTTTATAA
* ** *
75304614 AT-TTCA-TTATTAAATTAAAA
1 ATAAT-ATTTATTATTTTATAA
75304634 ATAATATTTATTATTTTATAA
1 ATAATATTTATTATTTTATAA
75304655 A-AATATT
1 ATAATATT
75304662 AAAATTTTAA
Statistics
Matches: 66, Mismatches: 10, Indels: 21
0.68 0.10 0.22
Matches are distributed among these distances:
16 1 0.02
17 7 0.11
18 4 0.06
19 3 0.05
20 24 0.36
21 21 0.32
22 6 0.09
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
ATAATATTTATTATTTTATAA
Found at i:75309440 original size:18 final size:18
Alignment explanation
Indices: 75309413--75309467 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
75309403 TTAACTTTTG
* *
75309413 AAAATCTAAAATATTATT
1 AAAATTTAAAATATTATA
75309431 AAAATTTAAAATATTTATA
1 AAAATTTAAAATA-TTATA
75309450 AAAATTCTAAAA-ATTATA
1 AAAATT-TAAAATATTATA
75309468 TAAGAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 17 0.52
19 11 0.33
20 5 0.15
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATTTAAAATATTATA
Found at i:75310035 original size:13 final size:13
Alignment explanation
Indices: 75310017--75310041 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75310007 TTATGAAAAT
75310017 TTAAAAATTTTGC
1 TTAAAAATTTTGC
75310030 TTAAAAATTTTG
1 TTAAAAATTTTG
75310042 AAGGAATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (13 bp):
TTAAAAATTTTGC
Found at i:75314446 original size:42 final size:42
Alignment explanation
Indices: 75314387--75314474 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
75314377 GATCAACCGA
75314387 AGAAGTATTGGACTGAGATTGCACCAAATCAACATCTCATGG
1 AGAAGTATTGGACTGAGATTGCACCAAATCAACATCTCATGG
* **
75314429 AGAAGTATTGGACTGAGATTGCACCAAATCAATATCTGGTGG
1 AGAAGTATTGGACTGAGATTGCACCAAATCAACATCTCATGG
75314471 AGAA
1 AGAA
75314475 CCTAGTAGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (42 bp):
AGAAGTATTGGACTGAGATTGCACCAAATCAACATCTCATGG
Found at i:75316424 original size:18 final size:18
Alignment explanation
Indices: 75316401--75316437 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
75316391 TGACCATCAG
75316401 CTGCATAGTAACCTTGAC
1 CTGCATAGTAACCTTGAC
75316419 CTGCATAGTAACCTTGAC
1 CTGCATAGTAACCTTGAC
75316437 C
1 C
75316438 ATAAGAGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (18 bp):
CTGCATAGTAACCTTGAC
Found at i:75320333 original size:5 final size:5
Alignment explanation
Indices: 75320323--75320357 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
75320313 TCATTTTCAA
75320323 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
75320358 CCTAATCTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:75325169 original size:17 final size:16
Alignment explanation
Indices: 75325143--75325176 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
75325133 TTTTTCTCAC
75325143 AAAAAAAAAAGGAAAA
1 AAAAAAAAAAGGAAAA
75325159 AAAAAAGAAAAGGAAAA
1 AAAAAA-AAAAGGAAAA
75325176 A
1 A
75325177 CAATTCAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAGGAAAA
Found at i:75333440 original size:21 final size:20
Alignment explanation
Indices: 75333414--75333467 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
75333404 ATAAATACTA
*
75333414 AAAATAAAATAAATGAAAGAC
1 AAAATAAAATAAATCAAA-AC
*
75333435 AAAATAAAATAAATCAAAAT
1 AAAATAAAATAAATCAAAAC
75333455 AAAAGTAAAATAA
1 AAAA-TAAAATAA
75333468 TAAATAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 5 0.17
21 25 0.83
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.17
Consensus pattern (20 bp):
AAAATAAAATAAATCAAAAC
Found at i:75333454 original size:15 final size:16
Alignment explanation
Indices: 75333434--75333463 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75333424 AAATGAAAGA
75333434 CAAAATAAAA-TAAAT
1 CAAAATAAAAGTAAAT
75333449 CAAAATAAAAGTAAA
1 CAAAATAAAAGTAAA
75333464 ATAATAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.73, C:0.07, G:0.03, T:0.17
Consensus pattern (16 bp):
CAAAATAAAAGTAAAT
Found at i:75333476 original size:21 final size:20
Alignment explanation
Indices: 75333414--75333478 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
75333404 ATAAATACTA
* *
75333414 AAAATAAAATAAATGAAAGAC
1 AAAATAAAATAAAT-AAAAAT
*
75333435 AAAATAAAATAAATCAAAAT
1 AAAATAAAATAAATAAAAAT
75333455 AAAAGTAAAAT-AATAAATAAT
1 AAAA-TAAAATAAATAAA-AAT
75333476 AAA
1 AAA
75333479 TAGATAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
20 12 0.32
21 26 0.68
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (20 bp):
AAAATAAAATAAATAAAAAT
Found at i:75343567 original size:41 final size:41
Alignment explanation
Indices: 75343324--75343551 Score: 372
Period size: 41 Copynumber: 5.6 Consensus size: 41
75343314 TGATTCAGTA
75343324 CACCGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCA-TTAAGCCTGCTAGACATATAGTCTGAAATGTAT
75343365 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
75343406 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
75343447 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
** * *
75343488 CACCGGCATTATTCCTGCTAGACTTAAAGTCTG-AAT-TACTT
1 CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTA--T
75343529 CACCGGCATTAAGCCTGCTAGAC
1 CACCGGCATTAAGCCTGCTAGAC
75343552 GTAACGTCTG
Statistics
Matches: 178, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
39 2 0.01
40 5 0.03
41 171 0.96
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (41 bp):
CACCGGCATTAAGCCTGCTAGACATATAGTCTGAAATGTAT
Found at i:75350801 original size:30 final size:32
Alignment explanation
Indices: 75350741--75350804 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
75350731 CACTTATTTT
75350741 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
75350774 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
75350805 ATACATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Done.