Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 244 of 313
Found at i:75351066 original size:41 final size:41
Alignment explanation
Indices: 75351021--75351217 Score: 317
Period size: 41 Copynumber: 4.8 Consensus size: 41
75351011 ACCGGCTCTT
*
75351021 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
75351062 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
75351103 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
75351144 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
75351185 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
75351218 TAACGATAAA
Statistics
Matches: 148, Mismatches: 4, Indels: 8
0.93 0.03 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 139 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:75351412 original size:2 final size:2
Alignment explanation
Indices: 75351405--75351429 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75351395 ATACATCCGA
75351405 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
75351430 ACTTAACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:75353283 original size:21 final size:21
Alignment explanation
Indices: 75353241--75353283 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
75353231 TATAATTCCT
*
75353241 CCATGTTTGGAAGGAATAGGC
1 CCATGTTTGGAAGGAAGAGGC
*
75353262 CCATGTTT-GATGGAAGATGGC
1 CCATGTTTGGAAGGAAGA-GGC
75353283 C
1 C
75353284 AGAGAGCTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (21 bp):
CCATGTTTGGAAGGAAGAGGC
Found at i:75353963 original size:14 final size:15
Alignment explanation
Indices: 75353944--75353999 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
75353934 AATCTTCAAT
75353944 GATATG-CAATCTTA
1 GATATGACAATCTTA
75353958 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
75353975 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
75353993 GATATGA
1 GATATGA
75354000 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:75353970 original size:17 final size:17
Alignment explanation
Indices: 75353950--75354013 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
75353940 CAATGATATG
75353950 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
75353967 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
75353985 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
75354004 CAATCTTAGA
1 CAATCTTAGA
75354014 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.36
18 15 0.36
19 11 0.26
20 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:75353988 original size:35 final size:37
Alignment explanation
Indices: 75353942--75354020 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
75353932 ATAATCTTCA
75353942 ATGATATGCAATCTTAGATATG-ATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
75353978 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGA-
1 ATGATATGCAATCTTAGATATGA-ATACAATCTTAGAT
75354014 A-GATATG
1 ATGATATG
75354021 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 19 0.47
36 8 0.20
37 13 0.32
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
Found at i:75358346 original size:19 final size:18
Alignment explanation
Indices: 75358330--75358370 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
75358320 AAAAAAATAT
75358330 TAAATTATTTTAAAAATTA
1 TAAATT-TTTTAAAAATTA
* *
75358349 TCAATTTTTTAAAAAATA
1 TAAATTTTTTAAAAATTA
75358367 TAAA
1 TAAA
75358371 AATATAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
TAAATTTTTTAAAAATTA
Found at i:75359340 original size:13 final size:13
Alignment explanation
Indices: 75359322--75359355 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
75359312 GTTATTTTTA
75359322 TTTAAATATAAAT
1 TTTAAATATAAAT
*
75359335 TTTAAATTTTAAAT
1 TTTAAA-TATAAAT
75359349 TTTAAAT
1 TTTAAAT
75359356 TCTTTTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTAAATATAAAT
Found at i:75359342 original size:7 final size:7
Alignment explanation
Indices: 75359330--75359356 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
75359320 TATTTAAATA
75359330 TAAATTT
1 TAAATTT
75359337 TAAATTT
1 TAAATTT
75359344 TAAATTT
1 TAAATTT
75359351 TAAATT
1 TAAATT
75359357 CTTTTTGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAAATTT
Found at i:75364656 original size:9 final size:9
Alignment explanation
Indices: 75364642--75364684 Score: 86
Period size: 9 Copynumber: 4.8 Consensus size: 9
75364632 GTGTACGGTG
75364642 GCGCGTGTA
1 GCGCGTGTA
75364651 GCGCGTGTA
1 GCGCGTGTA
75364660 GCGCGTGTA
1 GCGCGTGTA
75364669 GCGCGTGTA
1 GCGCGTGTA
75364678 GCGCGTG
1 GCGCGTG
75364685 GACGCATGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.09, C:0.23, G:0.47, T:0.21
Consensus pattern (9 bp):
GCGCGTGTA
Found at i:75365226 original size:24 final size:25
Alignment explanation
Indices: 75365199--75365246 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
75365189 CTTTTTTATA
*
75365199 TATATTTAAT-TTATTTTCAAATAC
1 TATATGTAATATTATTTTCAAATAC
* *
75365223 TATATGTATTATTATTTTTAAATA
1 TATATGTAATATTATTTTCAAATA
75365247 TTAGTTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (25 bp):
TATATGTAATATTATTTTCAAATAC
Found at i:75365401 original size:18 final size:18
Alignment explanation
Indices: 75365362--75365412 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
75365352 TGTATATTAT
* **
75365362 TTTTATATTATATACGTT
1 TTTTATATTATATATGCA
75365380 TTTTATATTATATATGCA
1 TTTTATATTATATATGCA
75365398 TTTTACT-TTATATAT
1 TTTTA-TATTATATAT
75365413 TATTTATCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (18 bp):
TTTTATATTATATATGCA
Found at i:75365753 original size:18 final size:18
Alignment explanation
Indices: 75365718--75365759 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
75365708 TGCTCTAATA
*
75365718 TATTTTTTACTTCTTTTT
1 TATTTTTTACTTCGTTTT
75365736 TATTATTTTA-TTCGTTTT
1 TATT-TTTTACTTCGTTTT
75365754 T-TTTTT
1 TATTTTT
75365760 GTTTTTATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 2 0.09
18 12 0.55
19 5 0.23
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (18 bp):
TATTTTTTACTTCGTTTT
Found at i:75365753 original size:19 final size:18
Alignment explanation
Indices: 75365718--75365759 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
75365708 TGCTCTAATA
75365718 TATTTTTTACTTCTTTTT
1 TATTTTTTACTTCTTTTT
75365736 TATTATTTTA-TTCGTTTTT
1 TATT-TTTTACTTC-TTTTT
75365755 T-TTTT
1 TATTTT
75365760 GTTTTTATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.09
18 9 0.41
19 11 0.50
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (18 bp):
TATTTTTTACTTCTTTTT
Found at i:75367693 original size:39 final size:39
Alignment explanation
Indices: 75367639--75367735 Score: 194
Period size: 39 Copynumber: 2.5 Consensus size: 39
75367629 AACTTCCATT
75367639 ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
1 ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
75367678 ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
1 ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
75367717 ACCAAGCAACCTACTATCA
1 ACCAAGCAACCTACTATCA
75367736 ATAAATGAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (39 bp):
ACCAAGCAACCTACTATCATTGAATCTGTCAGTAGCTTG
Found at i:75368240 original size:17 final size:17
Alignment explanation
Indices: 75368207--75368241 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
75368197 TTGTTTGTGG
**
75368207 TTTTTATAAAAGTATTA
1 TTTTTATAAAAAAATTA
75368224 TTTTTATAAAAAAATTA
1 TTTTTATAAAAAAATTA
75368241 T
1 T
75368242 GTTAGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTTTATAAAAAAATTA
Found at i:75368817 original size:280 final size:278
Alignment explanation
Indices: 75368316--75368876 Score: 1068
Period size: 280 Copynumber: 2.0 Consensus size: 278
75368306 TTGCGTATTT
*
75368316 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGTAAAACTAAATTGAT
1 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGGAAAACTAAATTGAT
75368381 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
66 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
75368446 TATCAATATTTGAGAGTTAAATTTATTATTACGTCAATAGAAAAGTCACCATTAGTGACAGAACC
131 TATCAATATTTGAGAGTTAAATTTATTATTACGTCAATAGAAAAGTCACCATTAGTGACAGAACC
75368511 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
196 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
75368576 TATTTTTATAGTTTGTCTGG
261 --TTTTTATAGTTTGTCTGG
75368596 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGGAAAACTAAATTGAT
1 TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGGAAAACTAAATTGAT
*
75368661 AGAATGTGTGGAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
66 AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
* *
75368726 TATCAATATTTGAGAGTTAAATTTATTATTATGTCAATAGAAAAGTCACCATTAGTGATAGAACC
131 TATCAATATTTGAGAGTTAAATTTATTATTACGTCAATAGAAAAGTCACCATTAGTGACAGAACC
75368791 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
196 GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
75368856 TTTTTATAGTTTGTCTGG
261 TTTTTATAGTTTGTCTGG
75368874 TTA
1 TTA
75368877 CCCAAATTTC
Statistics
Matches: 277, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
278 21 0.08
280 256 0.92
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (278 bp):
TTATCAAAAAATGAACTTTTAAATATTTTTAATTTTTAATTTTTAAGAAGGAAAACTAAATTGAT
AGAATGTGTGAAGTTGAGGGTTAAATTTGTTGATTTTTTAGATTTAGGACTAAATTGATAGAATT
TATCAATATTTGAGAGTTAAATTTATTATTACGTCAATAGAAAAGTCACCATTAGTGACAGAACC
GAGGCTAAAATAGAAAATTTTAAATTTGAATGACCAAAATAAAAATATACTAATAATTAGGTGAC
TTTTTATAGTTTGTCTGG
Found at i:75373509 original size:19 final size:19
Alignment explanation
Indices: 75373487--75373539 Score: 88
Period size: 19 Copynumber: 2.7 Consensus size: 19
75373477 TTCAACTCGG
75373487 AAGATCTCCTTCAAGACTA
1 AAGATCTCCTTCAAGACTA
*
75373506 AAGATCTCCTTCAAGACTG
1 AAGATCTCCTTCAAGACTA
75373525 AAGATCTCCATTCAA
1 AAGATCTCC-TTCAA
75373540 TTTCTCTCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 27 0.84
20 5 0.16
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.26
Consensus pattern (19 bp):
AAGATCTCCTTCAAGACTA
Found at i:75378388 original size:18 final size:18
Alignment explanation
Indices: 75378365--75378402 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
75378355 TAAAAAGCAT
*
75378365 AATATACAAAACAGTTTA
1 AATATACAAAACAATTTA
*
75378383 AATATATAAAACAATTTA
1 AATATACAAAACAATTTA
75378401 AA
1 AA
75378403 GTAAGTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.08, G:0.03, T:0.29
Consensus pattern (18 bp):
AATATACAAAACAATTTA
Found at i:75378434 original size:23 final size:22
Alignment explanation
Indices: 75378381--75378435 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
75378371 CAAAACAGTT
75378381 TAAATATATAAAACAATTTAAAG
1 TAAATA-ATAAAACAATTTAAAG
* *
75378404 TAAGTAATAAAACTATTTTAGAA-
1 TAAATAATAAAAC-AATTTA-AAG
75378427 TAAATAATA
1 TAAATAATA
75378436 TATAAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 7 0.26
23 18 0.67
24 2 0.07
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (22 bp):
TAAATAATAAAACAATTTAAAG
Found at i:75381299 original size:21 final size:23
Alignment explanation
Indices: 75381275--75381323 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
75381265 GTTAAATTTC
75381275 AAAATTTAT-AAAAAAAA-TCTA
1 AAAATTTATCAAAAAAAATTCTA
*
75381296 AAAA--TATCAAAAAAAATTCTG
1 AAAATTTATCAAAAAAAATTCTA
75381317 AAAATTT
1 AAAATTT
75381324 CTCTAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 3 0.13
20 8 0.35
21 11 0.48
23 1 0.04
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (23 bp):
AAAATTTATCAAAAAAAATTCTA
Found at i:75383613 original size:12 final size:12
Alignment explanation
Indices: 75383598--75383623 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75383588 TATATTTTAT
75383598 TTTATATATTTC
1 TTTATATATTTC
75383610 TTTATATATTTC
1 TTTATATATTTC
75383622 TT
1 TT
75383624 ATAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATATATTTC
Found at i:75390224 original size:20 final size:20
Alignment explanation
Indices: 75390196--75390240 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
75390186 CTTCTATTTC
75390196 AAAAAAAAAAGAGAGAAA-AG
1 AAAAAAAAAAGAGA-AAATAG
* *
75390216 AAAAGAAAAATAGAAAATAG
1 AAAAAAAAAAGAGAAAATAG
75390236 AAAAA
1 AAAAA
75390241 GAGAAAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (20 bp):
AAAAAAAAAAGAGAAAATAG
Found at i:75391410 original size:35 final size:35
Alignment explanation
Indices: 75391364--75391434 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
75391354 TTTTTTCTTT
* *
75391364 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGACTGGAGTCGTAGGCACGACGC
75391399 TTATTCTGTCACGACTGGAGTCGTAGGCACGACGC
1 TTATTCTGTCACGACTGGAGTCGTAGGCACGACGC
75391434 T
1 T
75391435 GATCTGATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.17, C:0.25, G:0.31, T:0.27
Consensus pattern (35 bp):
TTATTCTGTCACGACTGGAGTCGTAGGCACGACGC
Found at i:75398837 original size:11 final size:11
Alignment explanation
Indices: 75398818--75398916 Score: 57
Period size: 12 Copynumber: 8.9 Consensus size: 11
75398808 ATCATGTTCC
75398818 ACAAAAAAAAGG
1 ACAAAAAAAA-G
75398830 ACAAAAAAAAG
1 ACAAAAAAAAG
75398841 AC--AAAAAAG
1 ACAAAAAAAAG
75398850 A-AAAAAAAAG
1 ACAAAAAAAAG
*
75398860 A-AGAAGAAATAAT
1 ACA-AA-AAA-AAG
*
75398873 TCGAAAAAAAAG
1 AC-AAAAAAAAG
75398885 --AAAAAAAAG
1 ACAAAAAAAAG
*
75398894 AAAAAAGAAAAG
1 ACAAAA-AAAAG
*
75398906 AGAGAAAAAAA
1 ACA-AAAAAAA
75398917 AGTTAAAAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 22
0.73 0.04 0.22
Matches are distributed among these distances:
9 17 0.24
10 9 0.12
11 9 0.12
12 26 0.36
13 8 0.11
14 2 0.03
15 1 0.01
ACGTcount: A:0.79, C:0.04, G:0.14, T:0.03
Consensus pattern (11 bp):
ACAAAAAAAAG
Found at i:75398846 original size:9 final size:8
Alignment explanation
Indices: 75398833--75398916 Score: 55
Period size: 8 Copynumber: 9.9 Consensus size: 8
75398823 AAAAAGGACA
75398833 AAAAAAAG
1 AAAAAAAG
75398841 ACAAAAAAG
1 A-AAAAAAG
75398850 AAAAAAA-
1 AAAAAAAG
*
75398857 AAGAAGAAG
1 AA-AAAAAG
**
75398866 AAATAATTCG
1 AAA-AA-AAG
75398876 AAAAAAAAG
1 -AAAAAAAG
75398885 AAAAAAA-
1 AAAAAAAG
75398892 AGAAAAAAG
1 A-AAAAAAG
*
75398901 AAAAGAGAG
1 AAAA-AAAG
75398910 AAAAAAA
1 AAAAAAA
75398917 AGTTAAAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 18
0.69 0.09 0.21
Matches are distributed among these distances:
7 3 0.05
8 30 0.51
9 20 0.34
10 3 0.05
11 3 0.05
ACGTcount: A:0.80, C:0.02, G:0.14, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:75398925 original size:44 final size:42
Alignment explanation
Indices: 75398832--75398928 Score: 115
Period size: 44 Copynumber: 2.2 Consensus size: 42
75398822 AAAAAAGGAC
* *
75398832 AAAAAAAAGACAAAAAAGAAAAAAAAAGAAGAAGAAATAATT
1 AAAAAAAAGAAAAAAAAGAAAAAAAAAGAAGAAGAAAAAATT
75398874 CGAAAAAAAAGAAAAAAAAGAAAAAAGAAAAGAGAGAA-AAAAAAGTT
1 --AAAAAAAAGAAAAAAAAG-AAAAA-AAAAGA-AGAAGAAAAAA-TT
75398921 AAAAAAAA
1 AAAAAAAA
75398929 ATAAAAAGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
44 17 0.36
45 13 0.28
46 11 0.23
47 6 0.13
ACGTcount: A:0.79, C:0.02, G:0.13, T:0.05
Consensus pattern (42 bp):
AAAAAAAAGAAAAAAAAGAAAAAAAAAGAAGAAGAAAAAATT
Found at i:75398935 original size:44 final size:43
Alignment explanation
Indices: 75398831--75398935 Score: 122
Period size: 46 Copynumber: 2.3 Consensus size: 43
75398821 AAAAAAAGGA
* *
75398831 CAAAAAAAAGACAAAAAAGAAAAAAAAAGAAGAAGAAATAATT
1 CAAAAAAAAGAAAAAAAAGAAAAAAAAAGAAGAAGAAAAAATT
75398874 CGAAAAAAAAGAAAAAAAAGAAAAAAGAAAAGAGAGAA-AAAAAAGTT
1 C-AAAAAAAAGAAAAAAAAG-AAAAA-AAAAGA-AGAAGAAAAAA-TT
* *
75398921 AAAAAAAAATAAAAA
1 CAAAAAAAAGAAAAA
75398936 GTTTGATGAT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
43 1 0.02
44 17 0.32
45 5 0.09
46 24 0.45
47 6 0.11
ACGTcount: A:0.79, C:0.03, G:0.12, T:0.06
Consensus pattern (43 bp):
CAAAAAAAAGAAAAAAAAGAAAAAAAAAGAAGAAGAAAAAATT
Found at i:75399706 original size:35 final size:35
Alignment explanation
Indices: 75399660--75399730 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
75399650 TTTTTTCTTT
75399660 TTATTCCGTCACGGCTGGAGTCATGGGCACGACGC
1 TTATTCCGTCACGGCTGGAGTCATGGGCACGACGC
* *
75399695 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCCGTCACGGCTGGAGTCATGGGCACGACGC
75399730 T
1 T
75399731 GATCTGACGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.15, C:0.27, G:0.32, T:0.25
Consensus pattern (35 bp):
TTATTCCGTCACGGCTGGAGTCATGGGCACGACGC
Found at i:75401118 original size:127 final size:127
Alignment explanation
Indices: 75400890--75401133 Score: 366
Period size: 127 Copynumber: 1.9 Consensus size: 127
75400880 CTTGTTAGGT
* *
75400890 AGCAGATCAAAGACATAGCAGATCTGACATTCATCGGGGCAGATCCAAGATGGCGGATCTTATCT
1 AGCAGATCAAAGACATAGCAGATCTGACATTCATCGGGGCAGATCCAAGATGACAGATCTTATCT
* * * * *
75400955 CTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGG
66 CTCCGTAATAAGCAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTATTCGACAGGG
* *
75401017 AGCAGATCGAAGACATAGCAGA-CTTGACCTTCATCGGGGCAGATCCAAGATGACAGATCTTATC
1 AGCAGATCAAAGACATAGCAGATC-TGACATTCATCGGGGCAGATCCAAGATGACAGATCTTATC
*
75401081 TCTCCGTAAT-GGACAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTA
65 TCTCCGTAATAAG-CAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTA
75401134 ATGGGCGGGG
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
126 2 0.02
127 103 0.98
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (127 bp):
AGCAGATCAAAGACATAGCAGATCTGACATTCATCGGGGCAGATCCAAGATGACAGATCTTATCT
CTCCGTAATAAGCAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTATTCGACAGGG
Found at i:75401232 original size:172 final size:172
Alignment explanation
Indices: 75400945--75401305 Score: 607
Period size: 172 Copynumber: 2.1 Consensus size: 172
75400935 CAAGATGGCG
75400945 GATCTTATCTCTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
1 GATCTTATCTCTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
* * *
75401010 GACAGGGAGCAGATCGAAGACATAGCAGACTTGACCTTCATCGGGGCAGATCCAAGATGACAGAT
66 GACAGGGAGCAGATCAAAGACATAGCAGACTTGACCTTCATCGAGGCAGATCAAAGATGACAGAT
75401075 CTTATCTCTCCGTAATGGACAGGGAGTAAATCAAAGATAACA
131 CTTATCTCTCCGTAATGGACAGGGAGTAAATCAAAGATAACA
**
75401117 GATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
1 GATCTTATCTCTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
75401182 GACAGGGAGCAGATCAAAGACATAGCAGA-TCTGACCTTCATCGAGGCAGATCAAAGATGACAGA
66 GACAGGGAGCAGATCAAAGACATAGCAGACT-TGACCTTCATCGAGGCAGATCAAAGATGACAGA
* * * * * *
75401246 TCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACA
130 TCTTATCTCTCCGTAATGGACAGGGAGTAAATCAAAGATAACA
75401289 GATCTTATCTCTCTGTA
1 GATCTTATCTCTCTGTA
75401306 TTCGATGGGG
Statistics
Matches: 177, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
171 1 0.01
172 176 0.99
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (172 bp):
GATCTTATCTCTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
GACAGGGAGCAGATCAAAGACATAGCAGACTTGACCTTCATCGAGGCAGATCAAAGATGACAGAT
CTTATCTCTCCGTAATGGACAGGGAGTAAATCAAAGATAACA
Found at i:75401428 original size:299 final size:298
Alignment explanation
Indices: 75400890--75401831 Score: 1169
Period size: 299 Copynumber: 3.2 Consensus size: 298
75400880 CTTGTTAGGT
* * * * *
75400890 AGCAGATCAAAGACATAGCAGATCTGACATTCATCGGGGCAGATCCAAGATGGCGGATCTTATCT
1 AGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAGATCAAAGATGACAGATCTTATCT
** *
75400955 CTCTGTAATAAGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAGC
66 CTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
**
75401020 AGATCGAAGACATAGCAGA-CTTGACCTTCATCGGGGCAGATCCAAGATGACAGATCTTATCTCT
131 AGATCGAAGACATAGCAGATC-TGACCTTCATTAGGGCAGATCCAAGATGACAGATCTTATCTCT
* * * * * *
75401084 CCGTAATGGACAGGGAGTAAATCAAAGATAACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAG
195 CTGTAATGGACGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAG
75401149 ATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGG
260 ATCCAAGATGACAGATCTTATCTCTCTGTATTCGAC-GGG
75401189 AGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAGATCAAAGATGACAGATCTTATCT
1 AGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAGATCAAAGATGACAGATCTTATCT
*
75401254 CTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGATGGGGAGC
66 CTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
*
75401319 AGATCGAAGACATAGCAGATCTGACCTTCATTAGGGCAGATCTAAGATGACAGATCTTATCTCTC
131 AGATCGAAGACATAGCAGATCTGACCTTCATTAGGGCAGATCCAAGATGACAGATCTTATCTCTC
* * *
75401384 TGTAATAGG-CGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACAGGGAGTAG
196 TGTAAT-GGACGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAG
* * *
75401448 ATCGAAGACAT-AGCAGATCTGA-C-CT-T-CA-T---CGGG
260 ATCCAAG--ATGA-CAGATCTTATCTCTCTGTATTCGACGGG
* * * * * * * *
75401481 -GCAGATCCAAG--ATGGCAGATCTTATCTCTCCGTAATAGACGGTGAGTAGATAAAAAATGACA
1 AGCAGATCAAAGACATAGCAGATCTGA-C-CT---TCAT---C-GAG-GCAGATCAAAGATGACA
* ** *
75401543 GATCTTATCTCTCTGTAATGGACGGAAAGTAGATCTAAGATGACAGATCTTATCTCTCTGTATTC
56 GATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTC
* * * * * *
75401608 GACGGGGAGCAGATCGAAAACGTAGCAGCTCTGACCTTCA-TCGGGACAGATCCAAGATGGCGGA
121 GACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAGGG-CAGATCCAAGATGACAGA
*
75401672 TCTTATCTCTCTGTAATGGACGGGGAGTAGTTCCAAGATGACAGATCTTATCTCTCTGTAATGGA
185 TCTTATCTCTCTGTAATGGACGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTAATGGA
*
75401737 CGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGG
250 CGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGAC-GGG
* * * *
75401787 AGCAGATCGAAA-ACATAACAGATCTGACTTTCATCAAAGCAGATC
1 AGCAGATC-AAAGACATAGCAGATCTGACCTTCATCGAGGCAGATC
75401832 CAGGATGATT
Statistics
Matches: 549, Mismatches: 63, Indels: 62
0.81 0.09 0.09
Matches are distributed among these distances:
289 11 0.02
290 1 0.00
291 12 0.02
292 3 0.01
293 1 0.00
294 3 0.01
296 1 0.00
297 12 0.02
298 11 0.02
299 447 0.81
300 6 0.01
301 12 0.02
302 1 0.00
304 3 0.01
305 1 0.00
306 3 0.01
307 8 0.01
308 3 0.01
309 10 0.02
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (298 bp):
AGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAGATCAAAGATGACAGATCTTATCT
CTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
AGATCGAAGACATAGCAGATCTGACCTTCATTAGGGCAGATCCAAGATGACAGATCTTATCTCTC
TGTAATGGACGGGGAGTAGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGTAGA
TCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGG
Found at i:75401543 original size:172 final size:172
Alignment explanation
Indices: 75401365--75401821 Score: 727
Period size: 172 Copynumber: 2.7 Consensus size: 172
75401355 CAGATCTAAG
*
75401365 ATGACAGATCTTATCTCTCTGTAATAGG-CGGGGAGTAGATCCAAGATGACAGATCTTATCTCTC
1 ATGACAGATCTTATCTCTCTGTAAT-GGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTC
* * * *
75401429 TGTATTCGACAGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAGATCCAAGAT
65 TGTATTCGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGACAGATCCAAGAT
*
75401494 GGCAGATCTTATCTCTCCGTAATAGACGGTGAGTAGATAAAAA
130 GGCAGATCTTATCTCTCCGTAATAGACGGGGAGTAGATAAAAA
* *
75401537 ATGACAGATCTTATCTCTCTGTAATGGACGGAAAGTAGATCTAAGATGACAGATCTTATCTCTCT
1 ATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCT
* *
75401602 GTATTCGACGGGGAGCAGATCGAAAACGTAGCAGCTCTGACCTTCATCGGGACAGATCCAAGATG
66 GTATTCGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGACAGATCCAAGATG
* * * * ** *
75401667 GCGGATCTTATCTCTCTGTAATGGACGGGGAGTAGTTCCAAG
131 GCAGATCTTATCTCTCCGTAATAGACGGGGAGTAGATAAAAA
75401709 ATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCT
1 ATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCT
* *
75401774 GTATTCGACGGGGAGCAGATCGAAAACATAACAGATCTGACTTTCATC
66 GTATTCGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATC
75401822 AAAGCAGATC
Statistics
Matches: 261, Mismatches: 23, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
171 2 0.01
172 259 0.99
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (172 bp):
ATGACAGATCTTATCTCTCTGTAATGGACGGAGAGTAGATCCAAGATGACAGATCTTATCTCTCT
GTATTCGACGGGGAGCAGATCGAAAACATAGCAGATCTGACCTTCATCGGGACAGATCCAAGATG
GCAGATCTTATCTCTCCGTAATAGACGGGGAGTAGATAAAAA
Found at i:75401577 original size:127 final size:127
Alignment explanation
Indices: 75401104--75401559 Score: 741
Period size: 127 Copynumber: 3.6 Consensus size: 127
75401094 CAGGGAGTAA
* *
75401104 ATCAAAGATAACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTA
1 ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
* *
75401169 TCTCTCTGTATTCGACAGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATCGAGGCAG
66 TCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
*
75401231 ATCAAAGATGACAGATCTTATCTCTCTGTAATGGGCGGGGAGTAGATCCAAGATGACAGATCTTA
1 ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
** **
75401296 TCTCTCTGTATTCGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAGGGCAG
66 TCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
*
75401358 ATCTAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
1 ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
*
75401423 TCTCTCTGTATTCGACAGGGAGTAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
66 TCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
* * * * * ** *
75401485 ATCCAAGATGGCAGATCTTATCTCTCCGTAATAGACGGTGAGTAGATAAAAAATGACAGATCTTA
1 ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
75401550 TCTCTCTGTA
66 TCTCTCTGTA
75401560 ATGGACGGAA
Statistics
Matches: 307, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
127 307 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (127 bp):
ATCAAAGATGACAGATCTTATCTCTCTGTAATAGGCGGGGAGTAGATCCAAGATGACAGATCTTA
TCTCTCTGTATTCGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATCGGGGCAG
Found at i:75401811 original size:47 final size:45
Alignment explanation
Indices: 75401655--75401794 Score: 217
Period size: 45 Copynumber: 3.1 Consensus size: 45
75401645 TCATCGGGAC
* *
75401655 AGATCCAAGATGGCGGATCTTATCTCTCTGTAATGGACGGGGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* *
75401700 AGTTCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGAGAGT
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
* * *
75401745 AGATCCAAGATGACAGATCTTATCTCTCTGTATTCGACGGGGAGC
1 AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
75401790 AGATC
1 AGATC
75401795 GAAAACATAA
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 86 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.27
Consensus pattern (45 bp):
AGATCCAAGATGACAGATCTTATCTCTCTGTAATGGACGGGGAGT
Found at i:75403429 original size:12 final size:12
Alignment explanation
Indices: 75403414--75403439 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75403404 TATATTTTAT
75403414 TTTATATATTTC
1 TTTATATATTTC
75403426 TTTATATATTTC
1 TTTATATATTTC
75403438 TT
1 TT
75403440 ATAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTATATATTTC
Found at i:75405809 original size:19 final size:20
Alignment explanation
Indices: 75405785--75405829 Score: 76
Period size: 18 Copynumber: 2.4 Consensus size: 20
75405775 GTTAATTTTC
75405785 AAAAATTATAAAAAAATC-T
1 AAAAATTATAAAAAAATCTT
75405804 AAAAA-TATAAAAAAATCTT
1 AAAAATTATAAAAAAATCTT
75405823 AAAAATT
1 AAAAATT
75405830 TTGAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.50
19 11 0.46
20 1 0.04
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (20 bp):
AAAAATTATAAAAAAATCTT
Found at i:75411647 original size:22 final size:22
Alignment explanation
Indices: 75411616--75411674 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
75411606 TTTCTTTTTA
*
75411616 AAAAAAATAT-TAATACAATAT
1 AAAATAATATATAATACAATAT
* *
75411637 -AAATAATATATAATGCCATAT
1 AAAATAATATATAATACAATAT
75411658 AAAATAATATAATAATA
1 AAAATAATAT-ATAATA
75411675 TATGATATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 8 0.26
21 9 0.29
22 9 0.29
23 5 0.16
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATAATATATAATACAATAT
Found at i:75412677 original size:18 final size:18
Alignment explanation
Indices: 75412654--75412689 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
75412644 TGCTCCCTCT
*
75412654 TATTTCTTTTTACAGGCG
1 TATTTCCTTTTACAGGCG
75412672 TATTTCCTTTTACAGGCG
1 TATTTCCTTTTACAGGCG
75412690 ATCGAAGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.47
Consensus pattern (18 bp):
TATTTCCTTTTACAGGCG
Found at i:75417143 original size:11 final size:11
Alignment explanation
Indices: 75417119--75417161 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
75417109 TTCTAATACG
*
75417119 TATATATATTA
1 TATATATTTTA
*
75417130 TATGTATTTTA
1 TATATATTTTA
* *
75417141 TATATATTATG
1 TATATATTTTA
75417152 TATATATTTT
1 TATATATTTT
75417162 TTTATTGCAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:75417553 original size:19 final size:19
Alignment explanation
Indices: 75417466--75417553 Score: 54
Period size: 19 Copynumber: 4.3 Consensus size: 19
75417456 TAATATTTTC
* *
75417466 TTTTATTGTAGATATTATTC
1 TTTTA-TGTACATATTATTA
75417486 TTATTAT-TACATACTT-TTA
1 TT-TTATGTACATA-TTATTA
* *
75417505 TTATATGCACATATATATATGTA
1 TTTTATGTAC--ATAT-TAT-TA
75417528 TTTTTATGTACATATTATTA
1 -TTTTATGTACATATTATTA
75417548 TTTTAT
1 TTTTAT
75417554 ATTATTATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
18 3 0.06
19 17 0.32
20 8 0.15
21 10 0.19
22 5 0.09
23 2 0.04
24 8 0.15
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.57
Consensus pattern (19 bp):
TTTTATGTACATATTATTA
Found at i:75429170 original size:72 final size:72
Alignment explanation
Indices: 75429010--75429670 Score: 743
Period size: 72 Copynumber: 8.9 Consensus size: 72
75429000 CCGTTTTCAA
** * * * * *
75429010 AAAAATCAACTCATATTGTAAGAGGTGAGTTGAACCT-C-AAGACGCTGAGGTGTTTTCAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATTTC
75429073 T-TTTTC
66 TGTTTTC
*
75429079 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATTTC
75429144 TGTTTTC
66 TGTTTTC
* ** ** *
75429151 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATTTC
*
75429216 TATTTTTTTTTC
66 -----TGTTTTC
*
75429228 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATT
75429293 TCTGTTTTC
64 TCTGTTTTC
* ** ** *
75429302 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATTTC
*
75429367 TATTTTTTTTTC
66 -----TGTTTTC
*
75429379 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATT
75429444 TCTGTTTTC
64 TCTGTTTTC
* ** ** *
75429453 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATTTC
*
75429518 TATTTTTTTTTC
66 -----TGTTTTC
*
75429530 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATT
**
75429595 TCTGTTGTAA
64 TCTGTT-TTC
* * * *
75429605 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGG--ACACGCTGAGGTATTTTCAATT
75429670 T
64 T
75429671 TCGTTTTTCA
Statistics
Matches: 502, Mismatches: 63, Indels: 48
0.82 0.10 0.08
Matches are distributed among these distances:
69 34 0.07
70 1 0.00
71 21 0.04
72 179 0.36
73 39 0.08
74 15 0.03
75 21 0.04
77 18 0.04
79 174 0.35
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTATTTTCAATTTC
TGTTTTC
Found at i:75429257 original size:151 final size:151
Alignment explanation
Indices: 75429010--75429887 Score: 1129
Period size: 151 Copynumber: 5.7 Consensus size: 151
75429000 CCGTTTTCAA
** ** * *
75429010 AAAAATCAACTCATATTGTAAGAGGTGAGTTGAACCTCAAGAC--GCTGAGGTGTTTTCAA-TT-
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
75429071 TA----TTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
66 TATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
75429130 GTAATTTCAATTTCTGTTTTC
131 GTAATTTCAATTTCTGTTTTC
*
75429151 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
75429216 TATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
66 TATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
75429281 GTAATTTCAATTTCTGTTTTC
131 GTAATTTCAATTTCTGTTTTC
*
75429302 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
75429367 TATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
66 TATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
75429432 GTAATTTCAATTTCTGTTTTC
131 GTAATTTCAATTTCTGTTTTC
*
75429453 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
75429518 TATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
66 TATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
**
75429583 GTAATTTCAATTTCTGTTGTAA
131 GTAATTTCAATTTCTGTT-TTC
* ** * ** *
75429605 AAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACATGCTGAGGTATTTTCAA-T
* *
75429670 TTCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT
63 TTC--TATT---TTT-T---TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * * *
75429735 -TGGCTCACGCGTTGAGCTATTTTCAATTTCTGTCTTTC
117 CCGG-ACACGC--TGAGGTAATTTCAATTTCTGT-TTTC
* ** * * **
75429773 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 --AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-GACATGCTGAGGTA--TTTTC
* *
75429838 AA-TT-TA--TATTTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAG
60 AATTTCTATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
75429888 TTTTTTAATT
Statistics
Matches: 667, Mismatches: 35, Indels: 55
0.88 0.05 0.07
Matches are distributed among these distances:
141 37 0.06
143 15 0.02
144 2 0.00
145 2 0.00
149 6 0.01
151 371 0.56
152 37 0.06
154 17 0.03
155 4 0.01
156 34 0.05
157 3 0.00
158 4 0.01
160 3 0.00
161 2 0.00
162 2 0.00
164 4 0.01
165 2 0.00
166 43 0.06
167 1 0.00
168 20 0.03
169 1 0.00
170 50 0.07
172 7 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (151 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
TATTTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAG
GTAATTTCAATTTCTGTTTTC
Found at i:75429279 original size:79 final size:76
Alignment explanation
Indices: 75429003--75429887 Score: 848
Period size: 79 Copynumber: 11.5 Consensus size: 76
75428993 GTTACTTCCG
** * * *
75429003 TTTTCAAAAAAATCAACTCATATTGTAAGAGGTGAGTTGAACCTCA--AGACGCTGAGGTGTTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
75429066 CAA--T-TTAT
66 CAATTTCTTTT
* *
75429074 TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
75429137 CAATTTC--TG
66 CAATTTCTTTT
* ** * *
75429146 TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
75429209 CAATTTCTATTTTT
66 CAATTTC---TTTT
* *
75429223 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
75429288 CAATTTC--TG
66 CAATTTCTTTT
* ** * *
75429297 TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
75429360 CAATTTCTATTTTT
66 CAATTTC---TTTT
* *
75429374 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
75429439 CAATTTC--TG
66 CAATTTCTTTT
* ** * *
75429448 TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
75429511 CAATTTCTATTTTT
66 CAATTTC---TTTT
* *
75429525 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
*
75429590 CAATTTC--TG
66 CAATTTCTTTT
* * * *
75429599 TTGT-AAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATT
75429663 TTCAATTTTCGTTTTTCAATTT
64 TTCAA-TTTC-----T---TTT
* * *
75429685 CTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGTTG
1 -T---TTTC-AAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGC--TG
* *
75429749 AGCTATTTTCAATTTC-TGT
57 AGGTATTTTCAATTTCTTTT
* * * * *
75429768 CTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--
* *
75429833 TTTTCAATTT-ATAT
62 TTTTCAATTTCTTTT
*
75429847 TTTTCAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
75429888 TTTTTTAATT
Statistics
Matches: 674, Mismatches: 86, Indels: 100
0.78 0.10 0.12
Matches are distributed among these distances:
69 35 0.05
71 22 0.03
72 179 0.27
73 42 0.06
74 16 0.02
75 17 0.03
76 4 0.01
77 54 0.08
78 7 0.01
79 232 0.34
83 2 0.00
86 1 0.00
87 1 0.00
90 2 0.00
91 5 0.01
92 12 0.02
93 43 0.06
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (76 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT
CAATTTCTTTT
Found at i:75429773 original size:93 final size:93
Alignment explanation
Indices: 75429603--75429774 Score: 231
Period size: 93 Copynumber: 1.8 Consensus size: 93
75429593 TTTCTGTTGT
* *
75429603 AAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGCTATTTTCAA
*
75429668 TTTTCGTTTTTCAATTTCTGCCTTTCAA
66 TTTTCGTCTTTCAATTTCTGCCTTTCAA
* * * ***
75429696 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGTTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACACCGAGCTATTTTCA
75429760 A-TTTCTGTCTTTCAA
65 ATTTTC-GTCTTTCAA
75429775 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 6 0.09
93 62 0.91
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGCTATTTTCAA
TTTTCGTCTTTCAATTTCTGCCTTTCAA
Found at i:75429822 original size:170 final size:166
Alignment explanation
Indices: 75429530--75429834 Score: 459
Period size: 170 Copynumber: 1.8 Consensus size: 166
75429520 TTTTTTTTTC
*
75429530 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGCTAATTTCAATT
* *
75429595 TCTGTTGTAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACACCGAGGT
66 TCTGTTGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGT
75429660 ATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAA
131 ATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAA
* * * *
75429696 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGTTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGG-ACACGC--TGAGCTAATTTCA
* * * *
75429760 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCTTCAGATCACACACT
63 ATTTCTGT-TGT-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACC
75429825 GAGGTATTTT
126 GAGGTATTTT
75429835 TTCAATTTAT
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
165 2 0.02
166 43 0.35
168 19 0.15
169 2 0.02
170 57 0.46
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (166 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCCGGACACGCTGAGCTAATTTCAATT
TCTGTTGTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACACCGAGGT
ATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCAA
Found at i:75429906 original size:30 final size:30
Alignment explanation
Indices: 75429870--75429948 Score: 149
Period size: 30 Copynumber: 2.6 Consensus size: 30
75429860 TAACTCATAT
*
75429870 TGCGAGAGGTGAGTTGAGTTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
75429900 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
75429930 TGCGAGAGGTGAGTTGAGC
1 TGCGAGAGGTGAGTTGAGC
75429949 CTCGAGTCAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.20, C:0.09, G:0.34, T:0.37
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGCTTTTTAATTTC
Found at i:75432480 original size:26 final size:26
Alignment explanation
Indices: 75432449--75432547 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
75432439 GTCTTTTAAT
*
75432449 AACTGGGGCAAAAGCCCTTTTAGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
*
75432475 AACTGGGGCATAAGCCCTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
* *
75432501 AACTGGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTAGGTA
* *
75432527 AATTAGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
75432548 TGCACTTCCT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 66 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTAGGTA
Found at i:75432620 original size:20 final size:20
Alignment explanation
Indices: 75432597--75432663 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
75432587 TTATGAATAC
75432597 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
75432617 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75432637 ATCATGTGCATCTCATATCA-
1 ATCATGTGCATATCATA-CAT
75432657 ATCATGT
1 ATCATGT
75432664 ATATCAAAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75432627 original size:40 final size:39
Alignment explanation
Indices: 75432583--75432663 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 39
75432573 CCCAACCCAA
75432583 TGCATTATGAATAC-ATCATGTGCATATCATA-CATATCATG
1 TGCA-TAT-AATACAATCATGTGCATATCATATCA-ATCATG
* *
75432623 TGCATATCATACATATCATGTGCATCTCATATCAATCATG
1 TGCATATAATACA-ATCATGTGCATATCATATCAATCATG
75432663 T
1 T
75432664 ATATCAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
38 4 0.11
39 3 0.08
40 27 0.75
41 2 0.06
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (39 bp):
TGCATATAATACAATCATGTGCATATCATATCAATCATG
Found at i:75432628 original size:11 final size:11
Alignment explanation
Indices: 75432597--75432652 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
75432587 TTATGAATAC
75432597 ATCATGTGCAT
1 ATCATGTGCAT
*
75432608 ATCA--TACAT
1 ATCATGTGCAT
75432617 ATCATGTGCAT
1 ATCATGTGCAT
*
75432628 ATCA--TACAT
1 ATCATGTGCAT
75432637 ATCATGTGCAT
1 ATCATGTGCAT
*
75432648 CTCAT
1 ATCAT
75432653 ATCAATCATG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:75432729 original size:25 final size:25
Alignment explanation
Indices: 75432701--75432749 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
75432691 TAATTAAACT
* * *
75432701 CTAGGGGTATAATGGTCATTTTCAC
1 CTAGGGGCAAAATAGTCATTTTCAC
75432726 CTAGGGGCAAAATAGTCATTTTCA
1 CTAGGGGCAAAATAGTCATTTTCA
75432750 TATTATAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (25 bp):
CTAGGGGCAAAATAGTCATTTTCAC
Found at i:75433905 original size:23 final size:23
Alignment explanation
Indices: 75433869--75433913 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
75433859 GCTGAAAAAG
75433869 AAAAAGGGAGAAAAAGACTACACC
1 AAAAAGGGAGAAAAAGAC-ACACC
* *
75433893 AAAAA-GGATAAAACGACACAC
1 AAAAAGGGAGAAAAAGACACAC
75433914 TCTAATTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 10 0.53
24 5 0.26
ACGTcount: A:0.60, C:0.18, G:0.18, T:0.04
Consensus pattern (23 bp):
AAAAAGGGAGAAAAAGACACACC
Found at i:75443361 original size:4 final size:4
Alignment explanation
Indices: 75443354--75443399 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
75443344 ATATATATGT
75443354 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG AT
75443400 TTGAAGAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.24, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:75451921 original size:26 final size:26
Alignment explanation
Indices: 75451885--75451994 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
75451875 CATGAAATTC
*
75451885 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
75451911 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
75451937 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
75451963 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
75451989 TTATCA
1 TTATCA
75451995 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:75454223 original size:228 final size:227
Alignment explanation
Indices: 75453827--75454397 Score: 932
Period size: 228 Copynumber: 2.5 Consensus size: 227
75453817 TCTACTTCAT
*
75453827 TGCAACTTCA-AGGAGATAAGA-TCTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
1 TGCAACTTCAGA-GAGATAAGATTC-GCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATA
** * * * * * * *
75453890 AGACTTGTAACTTCAACTTGCCCTACTACAACTTCAGGGGGATAAGTTTTGTGGCTTTAATCTAC
64 AGACTCATAACTTTAACTTGCCCCACTGCAACTTCAAGGGAATAAGGTTTGTGGCTTCAATCTAC
75453955 TCCACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCA
129 TCCACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCA
*
75454020 GAGGTATAGGAATTATAGCTTTAATCTGCTCTAC
194 GAGGAATAGGAATTATAGCTTTAATCTGCTCTAC
* *
75454054 TGCAACTTCAGAGAGATAAGATTCACTATCTTCAGTTTGCTCCACTACAACTTCAGGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
75454119 ACTCATAAGCTTTAACTTGCCCCACTGCAACTTCAAGGGAATAAGGTTTGTGGCTTCAATCTACT
66 ACTCATAA-CTTTAACTTGCCCCACTGCAACTTCAAGGGAATAAGGTTTGTGGCTTCAATCTACT
75454184 CCACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCAG
130 CCACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCAG
*
75454249 AGGAATAGGATTTATAGCTTTAATCTGCTCTAC
195 AGGAATAGGAATTATAGCTTTAATCTGCTCTAC
* * *
75454282 TGCAACTTTAGAGAGATAAGATTCGTTATCTTCAGTTTGCTTCACTGCAACTTCAGGGAGATAAG
1 TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
75454347 ACTCATAACTTTAACTTGCCCCACTGCAACTTC-AGGGAGATAAGGTTTGTG
66 ACTCATAACTTTAACTTGCCCCACTGCAACTTCAAGGGA-ATAAGGTTTGTG
75454398 TATTTTTATC
Statistics
Matches: 321, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
226 5 0.02
227 100 0.31
228 216 0.67
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (227 bp):
TGCAACTTCAGAGAGATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAAG
ACTCATAACTTTAACTTGCCCCACTGCAACTTCAAGGGAATAAGGTTTGTGGCTTCAATCTACTC
CACTACAACTTCAGGGAGATAAGATTCACCATGGTAGGTTTGATCCGACCTACTGCAACTTCAGA
GGAATAGGAATTATAGCTTTAATCTGCTCTAC
Found at i:75454387 original size:44 final size:44
Alignment explanation
Indices: 75453827--75454482 Score: 261
Period size: 44 Copynumber: 14.5 Consensus size: 44
75453817 TCTACTTCAT
* * * * *
75453827 TGCAACTTCAAGGAGATAAGATCTGC-TATCTTCAGTCTGCTCCAC
1 TGCAACTTCAGGGAGATAAGAT-T-CATAACTTTAATTTGCTCCAC
* * *
75453872 TGCAACTTCAGGGAGATAAGACTT-GTAACTTCAACTTGC-CCTAC
1 TGCAACTTCAGGGAGATAAGA-TTCATAACTTTAATTTGCTCC-AC
* * * ** ** * *
75453916 TACAACTTCAGGGGGATAAGTTTTGTGGCTTTAATCTACTCCAC
1 TGCAACTTCAGGGAGATAAGATTCATAACTTTAATTTGCTCCAC
* ** * * *
75453960 TACAACTTCAGGGAGATAAGATTCACCA-TGGTAGGTTTGATCCGACCTAC
1 TGCAACTTCAGGGAGATAAGATTCATAACT-TTA-ATTTG---C-TCC-AC
* * * * *
75454010 TGCAACTTCAGAGG-TATAGGAATT-ATAGCTTTAATCTGCTCTAC
1 TGCAACTTCAG-GGAGATAAG-ATTCATAACTTTAATTTGCTCCAC
* * * *
75454054 TGCAACTTCAGAGAGATAAGATTCACTATCTTCAGTTTGCTCCAC
1 TGCAACTTCAGGGAGATAAGATTCA-TAACTTTAATTTGCTCCAC
* * * *
75454099 TACAACTTCAGGGAGATAAGACTCATAAGCTTTAACTTGCCCCAC
1 TGCAACTTCAGGGAGATAAGATTCATAA-CTTTAATTTGCTCCAC
* ** ** * * *
75454144 TGCAACTTCAAGGGA-ATAAGGTTTGTGGCTTCAATCTACTCCAC
1 TGCAACTTC-AGGGAGATAAGATTCATAACTTTAATTTGCTCCAC
* ** * * *
75454188 TACAACTTCAGGGAGATAAGATTCACCA-TGGTAGGTTTGATCCGACCTAC
1 TGCAACTTCAGGGAGATAAGATTCATAACT-TTA-ATTTG---C-TCC-AC
* * * * *
75454238 TGCAACTTCAGAGGA-ATAGGATTTATAGCTTTAATCTGCTCTAC
1 TGCAACTTCAG-GGAGATAAGATTCATAACTTTAATTTGCTCCAC
* * * * * * *
75454282 TGCAACTTTAGAGAGATAAGATTCGTTATCTTCAGTTTGCTTCAC
1 TGCAACTTCAGGGAGATAAGATTC-ATAACTTTAATTTGCTCCAC
* * *
75454327 TGCAACTTCAGGGAGATAAGACTCATAACTTTAACTTGCCCCAC
1 TGCAACTTCAGGGAGATAAGATTCATAACTTTAATTTGCTCCAC
* ** * * * * ** *
75454371 TGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTTTAT
1 TGCAACTTCAGGGAGATAAGATTCAT-AACTTTAAT-TTGCTCCAC
** ** * *
75454417 TGCAACTTCAGAAAGATAAGGATT-ATGGCTTTGATCTGCTCCAC
1 TGCAACTTCAGGGAGATAA-GATTCATAACTTTAATTTGCTCCAC
75454461 TGCAACTTCAGGGAGATAAGAT
1 TGCAACTTCAGGGAGATAAGAT
75454483 CTGTCATCTT
Statistics
Matches: 440, Mismatches: 136, Indels: 72
0.68 0.21 0.11
Matches are distributed among these distances:
43 20 0.05
44 188 0.43
45 136 0.31
46 30 0.07
47 3 0.01
48 2 0.00
49 10 0.02
50 41 0.09
51 10 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATTCATAACTTTAATTTGCTCCAC
Found at i:75454545 original size:89 final size:87
Alignment explanation
Indices: 75454268--75454556 Score: 226
Period size: 89 Copynumber: 3.2 Consensus size: 87
75454258 ATTTATAGCT
* * * * **
75454268 TTAATCTGCTCTACTGCAACTTTAGAGAGATAAGATTCGTTATCTTCAGTTTGCTTCACTGCAAC
1 TTAACCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GTTATCTTCAGCCTGCTTCACTGCAAC
*
75454333 TTCAGGGAGATAAGAC-T-CATAAC
65 TTCAGAGAGATAAGACTTGC-T-AC
* * * * * * * *
75454356 TTTAACTTGCCCCACTGCAACTTCAGGGAGATAAGGTTTGTGTATTTTTATCCTGCTTTATTGCA
1 -TTAACCTGCTCCACTGCAACTTCAGGGAGATAA-GATTGT-TATCTTCAGCCTGCTTCACTGCA
* *
75454421 ACTTCAGAAAGATAAGGATTATGGCT--
63 ACTTCAGAGAGATAA-GACT-T-GCTAC
* * * * *
75454447 TTGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTCATCTTCAGCCTGCTCCACTACAAC
1 TTAACCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTTATCTTCAGCCTGCTTCACTGCAAC
*
75454512 TTTAGAGAGATAAGACTTGCTAC
65 TTCAGAGAGATAAGACTTGCTAC
* *
75454535 TTCAACCTGCTCTACTACAACT
1 TT-AACCTGCTCCACTGCAACT
75454557 GCTTCACTGT
Statistics
Matches: 152, Mismatches: 37, Indels: 22
0.72 0.18 0.10
Matches are distributed among these distances:
86 3 0.02
87 1 0.01
88 5 0.03
89 74 0.49
90 64 0.42
91 2 0.01
93 1 0.01
94 1 0.01
95 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (87 bp):
TTAACCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTTATCTTCAGCCTGCTTCACTGCAACT
TCAGAGAGATAAGACTTGCTAC
Found at i:75458874 original size:9 final size:8
Alignment explanation
Indices: 75458859--75458898 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
75458849 AACCTATAAA
75458859 ATTTTTTT
1 ATTTTTTT
75458867 ATTTTTTT
1 ATTTTTTT
75458875 ATTTTTTT
1 ATTTTTTT
** *
75458883 CGTATTTT
1 ATTTTTTT
75458891 ATTTTTTT
1 ATTTTTTT
75458899 GTACTTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (8 bp):
ATTTTTTT
Found at i:75458890 original size:17 final size:17
Alignment explanation
Indices: 75458870--75458907 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
75458860 TTTTTTTATT
75458870 TTTTTATTTTTTTCGTA-
1 TTTTTATTTTTTT-GTAC
75458887 -TTTTATTTTTTTGTAC
1 TTTTTATTTTTTTGTAC
75458903 TTTTT
1 TTTTT
75458908 TGATCACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 3 0.16
16 12 0.63
17 4 0.21
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTTATTTTTTTGTAC
Found at i:75461671 original size:8 final size:8
Alignment explanation
Indices: 75461630--75461695 Score: 53
Period size: 8 Copynumber: 7.9 Consensus size: 8
75461620 CTTTCTTCTC
*
75461630 TTTTTGAT
1 TTTTTTAT
75461638 TTTTTTGAAT
1 TTTTTT--AT
75461648 TTATTATTAT
1 TT-TT-TTAT
*
75461658 TATTTTAT
1 TTTTTTAT
*
75461666 TTTTTT-C
1 TTTTTTAT
75461673 TTTTTTAT
1 TTTTTTAT
*
75461681 TATTTTAT
1 TTTTTTAT
75461689 TTTTTTA
1 TTTTTTA
75461696 AGGTCTCAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
7 6 0.13
8 27 0.59
9 2 0.04
10 7 0.15
11 2 0.04
12 2 0.04
ACGTcount: A:0.18, C:0.02, G:0.03, T:0.77
Consensus pattern (8 bp):
TTTTTTAT
Found at i:75461680 original size:15 final size:15
Alignment explanation
Indices: 75461648--75461693 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
75461638 TTTTTTGAAT
75461648 TTATTATTATTATTTTA
1 TTATT-TTATT-TTTTA
* *
75461665 TTTTTTTCTTTTTTA
1 TTATTTTATTTTTTA
75461680 TTATTTTATTTTTT
1 TTATTTTATTTTTT
75461694 TAAGGTCTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 17 0.68
16 4 0.16
17 4 0.16
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (15 bp):
TTATTTTATTTTTTA
Found at i:75466459 original size:30 final size:30
Alignment explanation
Indices: 75466418--75466484 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
75466408 AAATCGAAAC
75466418 CCAACACGTTAGGGTACGATTTCTCAGATTT
1 CCAA-ACGTTAGGGTACGATTTCTCAGATTT
75466449 CCAAACGTTAGGGTACGATTTCTCAGATTT
1 CCAAACGTTAGGGTACGATTTCTCAGATTT
75466479 CCAAAC
1 CCAAAC
75466485 ATGGAACATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 32 0.89
31 4 0.11
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (30 bp):
CCAAACGTTAGGGTACGATTTCTCAGATTT
Found at i:75475169 original size:21 final size:20
Alignment explanation
Indices: 75475121--75475177 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 20
75475111 TTAAATTTCA
75475121 AAAATTATAAAAAAA-ATAT
1 AAAATTATAAAAAAATATAT
* *
75475140 AAAAATATAAAAAAATCTGAT
1 AAAATTATAAAAAAATAT-AT
*
75475161 GAAATTATAAAAAAATA
1 AAAATTATAAAAAAATA
75475178 CTTTTCAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 14 0.45
20 1 0.03
21 16 0.52
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (20 bp):
AAAATTATAAAAAAATATAT
Found at i:75475513 original size:59 final size:59
Alignment explanation
Indices: 75475443--75475560 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 59
75475433 ATTATTTGAG
75475443 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
1 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
*
75475502 CCATTAGTTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
1 CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
75475561 TCAGTGTAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.47
Consensus pattern (59 bp):
CCATTAATTAAGCTTTTAAAATAAATATTTTTTATTTAATAATTACATATATCATGGTT
Found at i:75485064 original size:16 final size:16
Alignment explanation
Indices: 75485043--75485100 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
75485033 TTTGTGAGGA
75485043 TTTATTTTTAAAATAT
1 TTTATTTTTAAAATAT
*
75485059 TTTATTTATAAAAT-T
1 TTTATTTTTAAAATAT
* *
75485074 ATTATTTTAATAAATAAAT
1 TTTATTTT--TAAA-ATAT
75485093 TTTATTTT
1 TTTATTTT
75485101 AGAAAAAAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 7 0.21
16 13 0.39
17 4 0.12
18 1 0.03
19 8 0.24
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTATTTTTAAAATAT
Found at i:75488400 original size:19 final size:19
Alignment explanation
Indices: 75488375--75488465 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
75488365 ATAATCTTCA
75488375 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
75488394 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75488413 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75488430 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75488448 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
75488466 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:75488415 original size:14 final size:15
Alignment explanation
Indices: 75488396--75488451 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
75488386 TCTTAGATGT
75488396 GATATG-CAATCTTA
1 GATATGACAATCTTA
75488410 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
75488427 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
75488445 GATATGA
1 GATATGA
75488452 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:75488445 original size:35 final size:37
Alignment explanation
Indices: 75488375--75488472 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
75488365 ATAATCTTCA
*
75488375 ATGATATGCAATCTTAGATGTGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
75488413 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
75488448 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
75488473 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 22 0.39
36 18 0.32
37 10 0.18
38 6 0.11
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:75494241 original size:14 final size:15
Alignment explanation
Indices: 75494221--75494254 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
75494211 AAAAAGAGAA
75494221 AAAAAAT-AAAAAAT
1 AAAAAATAAAAAAAT
75494235 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
75494250 AAAAA
1 AAAAA
75494255 TGGAGAGGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:75494255 original size:6 final size:7
Alignment explanation
Indices: 75494221--75494254 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
75494211 AAAAAGAGAA
75494221 AAAAAAT
1 AAAAAAT
75494228 AAAAAAT
1 AAAAAAT
75494235 AAAAAAT
1 AAAAAAT
75494242 AAAAAAAT
1 -AAAAAAT
75494250 AAAAA
1 AAAAA
75494255 TGGAGAGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:75495259 original size:43 final size:43
Alignment explanation
Indices: 75495211--75495437 Score: 182
Period size: 43 Copynumber: 5.3 Consensus size: 43
75495201 CGCCTTAATC
*
75495211 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCT
* * * * *
75495254 CCCTAAGCAGTAGTGG-AGCAGATTGAAGAA-T-C-G-CCTTAACC
1 CCCTAAGCAGTAG-GGTAACAGGTT-AA-AATTGCAGATCTTATCT
* *
75495295 CCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCT
* * * ** *
75495338 CCCTAAGCAGTAGTGG-AACAGATCAATGA-TGACTCACCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAA-AATTG-CAGATCTT-ATCT
* * *
75495382 CCCTAAGCAGTAGGATAACAGGTCAAAATTGCGGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCT
75495425 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
75495438 TGGAGCAGAT
Statistics
Matches: 143, Mismatches: 26, Indels: 30
0.72 0.13 0.15
Matches are distributed among these distances:
39 2 0.01
40 5 0.03
41 24 0.17
42 5 0.03
43 66 0.46
44 37 0.26
45 4 0.03
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCT
Found at i:75495342 original size:84 final size:84
Alignment explanation
Indices: 75495201--75495492 Score: 415
Period size: 84 Copynumber: 3.4 Consensus size: 84
75495191 CAAAATTCAG
* *
75495201 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
75495266 GTGGAGCAGATTGAAGAAT
66 GTGGAGCAGATTGAAGAAT
* *
75495285 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
* * *
75495350 GTGGAACAGATCAATGATGACT
66 GTGGAGCAGAT---TGAAGAAT
* * * * *
75495372 CACCTTAATCCCCTAAGCAGTAGGATAACAGGTCAAAATTGCGGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
*
75495437 GTGGAGCAGATCGAAG-AT
66 GTGGAGCAGATTGAAGAAT
*
75495455 GCGCCTTAACCCCCTAAGTAGTAGGGTAACAGGTTAAA
1 -CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
75495493 GTATAAAGAT
Statistics
Matches: 181, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
83 1 0.01
84 106 0.59
87 74 0.41
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.24
Consensus pattern (84 bp):
CGCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATTGAAGAAT
Found at i:75495857 original size:207 final size:207
Alignment explanation
Indices: 75495498--75496042 Score: 928
Period size: 207 Copynumber: 2.6 Consensus size: 207
75495488 TTAAAGTATA
75495498 AAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGG
1 AAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGG
* * * *
75495563 CTTTCACGTGCTTACGAGGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAA
66 CTTTCACGTGTTTACGATGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
*
75495628 ATCAAATTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGT
131 ATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGT
*
75495693 TTATACTGAAGC
196 TTATACTGAAAC
75495705 AAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGG
1 AAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGG
*
75495770 CTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
66 CTTTCACGTGTTTACGATGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
* * * *
75495835 ATCGAAGTTTGGCGTTTCCATATTCGATGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGT
131 ATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGT
75495900 TTATACTGAAAC
196 TTATACTGAAAC
* * * * * *
75495912 AAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGG
1 AAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGG
*
75495977 CTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
66 CTTTCACGTGTTTACGATGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
75496042 A
131 A
75496043 AAGCTGGTTT
Statistics
Matches: 320, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
207 320 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (207 bp):
AAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGG
CTTTCACGTGTTTACGATGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
ATCAAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGT
TTATACTGAAAC
Found at i:75496143 original size:124 final size:124
Alignment explanation
Indices: 75495923--75496166 Score: 416
Period size: 124 Copynumber: 2.0 Consensus size: 124
75495913 AGATCCAAGA
* * * * *
75495923 TGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGCTTTCACGTGT
1 TGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGC
* *
75495988 TTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAAAGC
66 TTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAAAGC
75496047 TGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGC
1 TGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGC
*
75496112 TTACGATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAA
66 TTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
75496167 TCGAAGTTTG
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
124 112 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32
Consensus pattern (124 bp):
TGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGC
TTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAAAGC
Found at i:75496315 original size:331 final size:331
Alignment explanation
Indices: 75495713--75496373 Score: 1151
Period size: 331 Copynumber: 2.0 Consensus size: 331
75495703 GCAAGATCCT
* **
75495713 AGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCACG
1 AGCTGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACG
* * *
75495778 TGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGT
66 TGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGT
* * *
75495843 TTGGCGTTTCCATATTCGATGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTG
131 TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
* * *
75495908 AAACAAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGAT
196 AAACAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
75495973 TTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
261 TTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
75496038 ACAAAA
326 ACAAAA
*
75496044 AGCTGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACG
1 AGCTGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACG
*
75496109 TGCTTACGATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGT
66 TGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGT
75496174 TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
131 TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
* * * *
75496239 AAGCAAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGAT
196 AAACAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
*
75496304 TTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
261 TTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
75496369 ACAAA
326 ACAAA
75496374 TCGAAGTTTG
Statistics
Matches: 311, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
331 311 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (331 bp):
AGCTGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACG
TGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGT
TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
AAACAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
TTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAAA
Found at i:75496523 original size:538 final size:538
Alignment explanation
Indices: 75495506--75496580 Score: 2069
Period size: 538 Copynumber: 2.0 Consensus size: 538
75495496 TAAAGATCCT
* **
75495506 AGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCACG
1 AGCTGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACG
*
75495571 TGCTTACGAGGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCAAATT
66 TGCTTACGAGGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCAAAGT
75495636 TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
131 TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
75495701 AAGCAAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGAT
196 AAGCAAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGAT
75495766 TTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
261 TTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
75495831 ACAAATCGAAGTTTGGCGTTTCCATATTCGATGGAGGGCAGACACATAGCAGATCTGGCCTTCAG
326 ACAAATCGAAGTTTGGCGTTTCCATATTCGATGGAGGGCAGACACATAGCAGATCTGGCCTTCAG
75495896 ATGTTTATACTGAAACAAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAA
391 ATGTTTATACTGAAACAAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAA
75495961 GACATAGTTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTG
456 GACATAGTTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTG
75496026 TATTGTCAGAGAACAAAA
521 TATTGTCAGAGAACAAAA
*
75496044 AGCTGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACG
1 AGCTGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACG
* * * *
75496109 TGCTTACGATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGT
66 TGCTTACGAGGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCAAAGT
75496174 TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
131 TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
75496239 AAGCAAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGAT
196 AAGCAAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGAT
75496304 TTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
261 TTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
75496369 ACAAATCGAAGTTTGGCGTTTCCATATTCGATGGAGGGCAGACACATAGCAGATCTGGCCTTCAG
326 ACAAATCGAAGTTTGGCGTTTCCATATTCGATGGAGGGCAGACACATAGCAGATCTGGCCTTCAG
75496434 ATGTTTATACTGAAACAAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAA
391 ATGTTTATACTGAAACAAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAA
75496499 GACATAGTTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTG
456 GACATAGTTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTG
75496564 TATTGTCAGAGAACAAA
521 TATTGTCAGAGAACAAA
75496581 TTGAAGTTTG
Statistics
Matches: 528, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
538 528 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (538 bp):
AGCTGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGCTTTCACG
TGCTTACGAGGAAGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAGAGAACAAATCAAAGT
TTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTG
AAGCAAGATCCTAGCTGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGAT
TTGGCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAATCGAAGTTTGGCGTTTCCATATTCGATGGAGGGCAGACACATAGCAGATCTGGCCTTCAG
ATGTTTATACTGAAACAAGATCCAAGATGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAA
GACATAGTTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTG
TATTGTCAGAGAACAAAA
Found at i:75496765 original size:206 final size:207
Alignment explanation
Indices: 75496047--75496792 Score: 1127
Period size: 207 Copynumber: 3.6 Consensus size: 207
75496037 AACAAAAAGC
* * * *
75496047 TGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGTTGATTTGGCTTTCACGTGC
1 TGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* *
75496112 TTACGATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGTTTG
66 TTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
*
75496177 GCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAAATGTTTATACTGAAG
131 GCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAG
* *
75496242 CAAGATCCTAGC
196 CAAGATCCAAGA
*
75496254 TGGTTTGGCATCCTTGTGCTTACAAGGAACAAATTGAAGACATAGCTGATTTGGCTTTCACGTGT
1 TGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* *
75496319 TTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
66 TTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
* * *
75496384 GCGTTTCCATATTCGATGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAA
131 GCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAG
75496449 CAAGATCCAAGA
196 CAAGATCCAAGA
* * *
75496461 TGGTTTGGCATCTTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGCTTTCACGTGT
1 TGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* *
75496526 TTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATTGAAGTTTG
66 TTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
** * * * ** * * *
75496591 GCGTCTCCATATTCGACAAAGGACAAACATATAGCAGATCTAACCTTCAGATGATGAGACTGAAG
131 GCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAG
75496656 C-AGATCCAAGA
196 CAAGATCCAAGA
* * ** * *
75496667 TGGTTTGGTATCCTTGTGCTTACAATGAGTAAATCGAAGACATAGCTGATTTGGCTTTCGCATGT
1 TGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* *
75496732 TTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTTTCAG-GAAACAAATTGAAG
66 TTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAG-AACAAATCGAAG
75496793 AAGCAGATTT
Statistics
Matches: 496, Mismatches: 42, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
205 1 0.00
206 125 0.25
207 370 0.75
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (207 bp):
TGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGT
TTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
GCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTGGCCTTCAGATGTTTATACTGAAG
CAAGATCCAAGA
Found at i:75497215 original size:19 final size:19
Alignment explanation
Indices: 75497190--75497278 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
75497180 ATAATCTTCA
75497190 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
75497209 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75497228 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
75497245 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
75497263 ATGATATACAATCTTA
1 ATGATATGCAATCTTA
75497279 AAAGATATGA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:75497230 original size:14 final size:15
Alignment explanation
Indices: 75497211--75497266 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
75497201 TCTTAGATGT
75497211 GATATG-CAATCTTA
1 GATATGACAATCTTA
75497225 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
75497242 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
75497260 GATATGA
1 GATATGA
75497267 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:75497260 original size:35 final size:37
Alignment explanation
Indices: 75497198--75497278 Score: 130
Period size: 35 Copynumber: 2.2 Consensus size: 37
75497188 CAATGATATG
*
75497198 CAATCTTAGATGTGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
75497234 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
75497271 CAATCTTA
1 CAATCTTA
75497279 AAAGATATGA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
35 16 0.38
36 15 0.36
37 11 0.26
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:75498571 original size:43 final size:42
Alignment explanation
Indices: 75498496--75498604 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
75498486 TTACAGCGCT
* * ** *
75498496 CCGCTAAAGAACATGACATTTAGCGGCGCTTTTTCAACAAACG
1 CCGCTAAAAAACATGAC-TTTAACGGAACTTTTCCAACAAACG
*
75498539 CCGCTAAAAAACATGATCTTTAACGGAACTTTTCCCACAAACG
1 CCGCTAAAAAACATGA-CTTTAACGGAACTTTTCCAACAAACG
*
75498582 CCGCTAAAAAACATAACCTTTAA
1 CCGCTAAAAAACATGA-CTTTAA
75498605 AAAATGTTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 56 0.98
44 1 0.02
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.23
Consensus pattern (42 bp):
CCGCTAAAAAACATGACTTTAACGGAACTTTTCCAACAAACG
Found at i:75500210 original size:15 final size:16
Alignment explanation
Indices: 75500176--75500212 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
75500166 ACCCAACCTA
*
75500176 ACCCAAAACCCAGAAG
1 ACCCAAAACCCACAAG
75500192 -CCCAAAACCC-CAAG
1 ACCCAAAACCCACAAG
75500206 ACCCAAA
1 ACCCAAA
75500213 TCAGAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.49, C:0.43, G:0.08, T:0.00
Consensus pattern (16 bp):
ACCCAAAACCCACAAG
Found at i:75501291 original size:25 final size:26
Alignment explanation
Indices: 75501248--75501327 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
75501238 ATACTATATC
* *
75501248 ATATATAAATATGCATTTTTCATATTA-
1 ATATATATATATG--TTTTTAATATTAT
75501275 ATATATATATATGTTTTTAATATTAT
1 ATATATATATATGTTTTTAATATTAT
*
75501301 ATTATCATGTATATG-TTTTAATATTAT
1 A-TAT-ATATATATGTTTTTAATATTAT
75501328 TAGCTATCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
25 11 0.23
26 1 0.02
27 27 0.57
28 8 0.17
ACGTcount: A:0.38, C:0.04, G:0.05, T:0.54
Consensus pattern (26 bp):
ATATATATATATGTTTTTAATATTAT
Found at i:75501504 original size:21 final size:21
Alignment explanation
Indices: 75501463--75501504 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75501453 TCTAATATAA
* *
75501463 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
75501484 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
75501505 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:75501911 original size:21 final size:21
Alignment explanation
Indices: 75501887--75501938 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
75501877 ACTATTATTT
* *
75501887 TATTTATTTTTATTCCTAGTA
1 TATTTATTTTTAATACTAGTA
* *
75501908 TATTTATTATTAATATTAGTA
1 TATTTATTTTTAATACTAGTA
*
75501929 TATGTATTTT
1 TATTTATTTT
75501939 ATTATACGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (21 bp):
TATTTATTTTTAATACTAGTA
Found at i:75518123 original size:21 final size:21
Alignment explanation
Indices: 75518082--75518123 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75518072 TCTAATATAA
* *
75518082 ATATATATATCATATAGGTTT
1 ATATACATATCATACAGGTTT
*
75518103 ATATACATATCATACATGTTT
1 ATATACATATCATACAGGTTT
75518124 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATACATATCATACAGGTTT
Found at i:75518528 original size:21 final size:21
Alignment explanation
Indices: 75518504--75518555 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
75518494 ACTATTATTT
* *
75518504 TATTTATTTTTATTCCTAGTA
1 TATTTATTTTTAATACTAGTA
* *
75518525 TATTTATTATTAATATTAGTA
1 TATTTATTTTTAATACTAGTA
*
75518546 TATGTATTTT
1 TATTTATTTT
75518556 ATTATACGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.62
Consensus pattern (21 bp):
TATTTATTTTTAATACTAGTA
Found at i:75518783 original size:19 final size:18
Alignment explanation
Indices: 75518759--75518802 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
75518749 TTTTATATAT
75518759 TATGTATGTATA-TATTAC
1 TATGTAT-TATAGTATTAC
*
75518777 ATATGTATTTTAGTATTAC
1 -TATGTATTATAGTATTAC
75518796 TATGTAT
1 TATGTAT
75518803 ACACTTTTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (18 bp):
TATGTATTATAGTATTAC
Found at i:75520373 original size:35 final size:35
Alignment explanation
Indices: 75520327--75520397 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
75520317 TCTGATAATT
*
75520327 ACAAAGAATTTCACAAATTTCAGCAGGTCTTAACC
1 ACAAAGAATTTCACAAATTTAAGCAGGTCTTAACC
75520362 ACAAAGAATTTCACAAATTTAAGCAGGTCTTAACC
1 ACAAAGAATTTCACAAATTTAAGCAGGTCTTAACC
75520397 A
1 A
75520398 TCAATGCTGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.25
Consensus pattern (35 bp):
ACAAAGAATTTCACAAATTTAAGCAGGTCTTAACC
Found at i:75521087 original size:20 final size:20
Alignment explanation
Indices: 75521062--75521123 Score: 97
Period size: 20 Copynumber: 3.0 Consensus size: 20
75521052 CTCATTTTCA
75521062 ATTTTTTTTCTTTTTCTTTT
1 ATTTTTTTTCTTTTTCTTTT
75521082 ATTTTTTTTCTTTTTCTTTT
1 ATTTTTTTTCTTTTTCTTTT
75521102 ATTTTTTTCTTCTTTTTTCTTT
1 A-TTTTTT-TTC-TTTTTCTTT
75521124 CAAATTTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
20 21 0.54
21 6 0.15
22 3 0.08
23 9 0.23
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (20 bp):
ATTTTTTTTCTTTTTCTTTT
Found at i:75521089 original size:14 final size:13
Alignment explanation
Indices: 75521063--75521124 Score: 63
Period size: 13 Copynumber: 4.7 Consensus size: 13
75521053 TCATTTTCAA
75521063 TTTTTTTTCTTTT
1 TTTTTTTTCTTTT
*
75521076 TCTTTTATT-TTTT
1 T-TTTTTTTCTTTT
*
75521089 TTCTTTTTCTTTT
1 TTTTTTTTCTTTT
*
75521102 ATTTTTTTCTTCTT
1 TTTTTTTTCTT-TT
*
75521116 TTTTCTTTC
1 TTTTTTTTC
75521125 AAATTTGTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
12 5 0.13
13 19 0.49
14 15 0.38
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTTCTTTT
Found at i:75524902 original size:19 final size:19
Alignment explanation
Indices: 75524878--75524914 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
75524868 TTTAAACATT
75524878 AAAAATATTAAAAATTATA
1 AAAAATATTAAAAATTATA
* *
75524897 AAAAATTTTAAAATTTAT
1 AAAAATATTAAAAATTAT
75524915 TTAATTGCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATATTAAAAATTATA
Found at i:75527556 original size:6 final size:6
Alignment explanation
Indices: 75527545--75527587 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
75527535 ATGTCCTTGG
* * *
75527545 TATTTT TATTTT TATTAT TATTTAT TACTAT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTT-T TATTTT TATTTT TATTTT
75527588 GATGCCACTC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (6 bp):
TATTTT
Found at i:75527843 original size:3 final size:3
Alignment explanation
Indices: 75527835--75527875 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
75527825 GTATTTCTAC
*
75527835 ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
75527876 ATATAGTAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:75528542 original size:4 final size:4
Alignment explanation
Indices: 75528533--75528574 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
75528523 TTCGCCATGT
* *
75528533 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA CTTA TGTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
75528575 CGATCATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:75531376 original size:153 final size:153
Alignment explanation
Indices: 75531098--75531403 Score: 612
Period size: 153 Copynumber: 2.0 Consensus size: 153
75531088 CCAACTTTTC
75531098 AGAACTTTTTGACCATTTTTAAAAAAAATCTCTATAGATTCATTGTCTAGGTATTCATTGTCTTA
1 AGAACTTTTTGACCATTTTTAAAAAAAATCTCTATAGATTCATTGTCTAGGTATTCATTGTCTTA
75531163 CCCCTTCGCTGGGTTTGGTTTGGGACGGCTGCTTGATTTCATTGTGCAATCTAAAGTCTTTCTAC
66 CCCCTTCGCTGGGTTTGGTTTGGGACGGCTGCTTGATTTCATTGTGCAATCTAAAGTCTTTCTAC
75531228 TTTGTCATTTTAAAAGTCTGCAT
131 TTTGTCATTTTAAAAGTCTGCAT
75531251 AGAACTTTTTGACCATTTTTAAAAAAAATCTCTATAGATTCATTGTCTAGGTATTCATTGTCTTA
1 AGAACTTTTTGACCATTTTTAAAAAAAATCTCTATAGATTCATTGTCTAGGTATTCATTGTCTTA
75531316 CCCCTTCGCTGGGTTTGGTTTGGGACGGCTGCTTGATTTCATTGTGCAATCTAAAGTCTTTCTAC
66 CCCCTTCGCTGGGTTTGGTTTGGGACGGCTGCTTGATTTCATTGTGCAATCTAAAGTCTTTCTAC
75531381 TTTGTCATTTTAAAAGTCTGCAT
131 TTTGTCATTTTAAAAGTCTGCAT
75531404 CTAGGAGAAT
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
153 153 1.00
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (153 bp):
AGAACTTTTTGACCATTTTTAAAAAAAATCTCTATAGATTCATTGTCTAGGTATTCATTGTCTTA
CCCCTTCGCTGGGTTTGGTTTGGGACGGCTGCTTGATTTCATTGTGCAATCTAAAGTCTTTCTAC
TTTGTCATTTTAAAAGTCTGCAT
Found at i:75535007 original size:12 final size:12
Alignment explanation
Indices: 75534992--75535026 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
75534982 TAAAAAATTA
75534992 TAAAAAATTCTT
1 TAAAAAATTCTT
75535004 TAAAAAATTCTT
1 TAAAAAATTCTT
75535016 TAAAAAATTCT
1 TAAAAAATTCT
75535027 AAAAATTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (12 bp):
TAAAAAATTCTT
Found at i:75535029 original size:10 final size:10
Alignment explanation
Indices: 75534977--75535036 Score: 57
Period size: 10 Copynumber: 5.6 Consensus size: 10
75534967 AACTTAGGTT
*
75534977 AATTATAAAA
1 AATTCTAAAA
*
75534987 AATTATAAAA
1 AATTCTAAAA
75534997 AATTCTTTAAAA
1 AATTC--TAAAA
75535009 AATTCTTTAAAA
1 AATTC--TAAAA
75535021 AATTCTAAAA
1 AATTCTAAAA
*
75535031 ATTTCT
1 AATTCT
75535037 CTAATAGTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
10 24 0.52
12 22 0.48
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (10 bp):
AATTCTAAAA
Found at i:75535039 original size:12 final size:12
Alignment explanation
Indices: 75534992--75535040 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
75534982 TAAAAAATTA
*
75534992 TAAAAAATTCTT
1 TAAAAAATTCTC
*
75535004 TAAAAAATTCTT
1 TAAAAAATTCTC
75535016 TAAAAAA-T-TC
1 TAAAAAATTCTC
*
75535026 TAAAAATTTCTC
1 TAAAAAATTCTC
75535038 TAA
1 TAA
75535041 TAGTTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 7 0.21
11 2 0.06
12 24 0.73
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (12 bp):
TAAAAAATTCTC
Found at i:75541011 original size:8 final size:8
Alignment explanation
Indices: 75540992--75541048 Score: 50
Period size: 8 Copynumber: 7.5 Consensus size: 8
75540982 CAGTGGAGGC
75540992 AAAAAAAT
1 AAAAAAAT
75541000 --AAAAAT
1 AAAAAAAT
75541006 AAAAAAAT
1 AAAAAAAT
*
75541014 AAAAAGCA-
1 AAAAA-AAT
75541022 AAAAAAA-
1 AAAAAAAT
*
75541029 AAACAAAT
1 AAAAAAAT
*
75541037 AAACAAAT
1 AAAAAAAT
75541045 AAAA
1 AAAA
75541049 GAAAAACCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
6 6 0.15
7 7 0.17
8 27 0.66
9 1 0.02
ACGTcount: A:0.84, C:0.05, G:0.02, T:0.09
Consensus pattern (8 bp):
AAAAAAAT
Found at i:75541011 original size:14 final size:14
Alignment explanation
Indices: 75540992--75541048 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
75540982 CAGTGGAGGC
75540992 AAAAAAATAAAAAT
1 AAAAAAATAAAAAT
*
75541006 AAAAAAATAAAAAGCA
1 AAAAAAATAAAAA--T
*
75541022 AAAAAAAAAACAAAT
1 AAAAAAATAA-AAAT
*
75541037 AAACAAATAAAA
1 AAAAAAATAAAA
75541049 GAAAAACCTC
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
14 15 0.43
15 8 0.23
16 9 0.26
17 3 0.09
ACGTcount: A:0.84, C:0.05, G:0.02, T:0.09
Consensus pattern (14 bp):
AAAAAAATAAAAAT
Found at i:75541048 original size:23 final size:22
Alignment explanation
Indices: 75540993--75541055 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 22
75540983 AGTGGAGGCA
*
75540993 AAAAAATAAAAATAAAA-AAAT
1 AAAAAATAAAAAAAAAACAAAT
75541014 AAAAAGCA-AAAAAAAAAACAAAT
1 AAAAA--ATAAAAAAAAAACAAAT
*
75541037 AAACAAATAAAAGAAAAAC
1 AAA-AAATAAAAAAAAAAC
75541056 CTCTACTGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
21 5 0.14
22 10 0.29
23 18 0.51
24 2 0.06
ACGTcount: A:0.83, C:0.06, G:0.03, T:0.08
Consensus pattern (22 bp):
AAAAAATAAAAAAAAAACAAAT
Found at i:75541523 original size:8 final size:8
Alignment explanation
Indices: 75541489--75541537 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
75541479 TGGAAAAACG
75541489 AAAAG-AA
1 AAAAGAAA
*
75541496 AAATGAAA
1 AAAAGAAA
*
75541504 AAATGAAA
1 AAAAGAAA
75541512 AAAAGAAA
1 AAAAGAAA
75541520 AAAA-AAGA
1 AAAAGAA-A
75541528 AAAAGAAA
1 AAAAGAAA
75541536 AA
1 AA
75541538 GGAGAGGCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
7 6 0.16
8 29 0.78
9 2 0.05
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (8 bp):
AAAAGAAA
Found at i:75542639 original size:86 final size:86
Alignment explanation
Indices: 75542494--75542757 Score: 393
Period size: 86 Copynumber: 3.1 Consensus size: 86
75542484 AGTAAAAATT
* * * *
75542494 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTAGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
75542559 GCATTGACAGTGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
75542580 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
75542645 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * *
75542666 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
75542731 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
*
75542753 AAAGA
1 GAAGA
75542758 TGGCAGATTT
Statistics
Matches: 160, Mismatches: 17, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
86 140 0.88
87 20 0.12
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:75543038 original size:44 final size:43
Alignment explanation
Indices: 75542946--75543412 Score: 157
Period size: 44 Copynumber: 10.7 Consensus size: 43
75542936 CCGATAATTC
* * * *
75542946 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAGAT-AGTAATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAA-ATAAG-GATCT
*
75542990 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAGGATCT
* ** * *** *
75543034 TATCTCTCTGA-AGTTACAGCAGAGTAGA-TCGTATCAGG-TCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAGGATCT
* * * ** * *
75543075 TATCACCCTGAGGTTACAGTGGAACAGACCAAAGAATTTCA-GATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--TAAGGATCT
* *
75543121 TATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATAT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAAT-AAGGATCT
* ** * *** *
75543165 TATCTCTCTGA-AGTTACAGCAGAGTAGA-TCGCATCAGG-TCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAGGATCT
* * * * ** *
75543206 TATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCA-GATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGA-TTAA-AA--TAAGGATCT
* * ***
75543252 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAG-GATCT
** * * ** * *
75543296 TATCTCTATGAGATTACAGCGGAGTAGATTGAAGCT-AGTAATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAG-GATCT
* * * *
75543340 TATATCTCTGA-AGTTACAGTGGAGCTGATTAAAATAAATGATCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAAT-AAGGATCT
* * *
75543384 TATCTCTCTGA-AGTTACAGTAGAGTAGAT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGAT
75543413 CACATCAGAT
Statistics
Matches: 309, Mismatches: 88, Indels: 52
0.69 0.20 0.12
Matches are distributed among these distances:
41 47 0.15
42 9 0.03
43 15 0.05
44 169 0.55
45 9 0.03
46 60 0.19
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAGGATCT
Found at i:75543299 original size:131 final size:131
Alignment explanation
Indices: 75542986--75543324 Score: 511
Period size: 131 Copynumber: 2.6 Consensus size: 131
75542976 AAAGATAGTA
75542986 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
1 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
* *
75543051 AGCAGAGTAGATCGTATCAGGTCTTATCACCCTGAGGTTACAGTGGAACAGACCAAAGAATTTCA
66 AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAACAGACCAAAGAATTTCA
75543116 G
131 G
*
75543117 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATATTATCTCTCTGAAGTTAC
1 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
** *
75543182 AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAGTAGACCGAAGAATTTCA
66 AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAACAGACCAAAGAATTTCA
75543247 G
131 G
* * * * *** *
75543248 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATT-GAAGCCAGAGATCTTATCTCTATG-AGATT
1 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAG-GATCTTATCTCTCTGAAG-TT
*
75543311 ACAGCGGAGTAGAT
64 ACAGCAGAGTAGAT
75543325 TGAAGCTAGT
Statistics
Matches: 190, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
130 6 0.03
131 184 0.97
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (131 bp):
ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
AGCAGAGTAGATCGCATCAGGTCTTATCACCCTGAGGTTACAGGGGAACAGACCAAAGAATTTCA
G
Found at i:75543513 original size:46 final size:46
Alignment explanation
Indices: 75543441--75543541 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
75543431 ATAACTCTAT
* * * *
75543441 CTCCCTGTATTTGGCAGTGGAACAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTCGAACAGATCGAAGATGGCAGATCTTAC
* * *
75543487 CTTCCTGTATTTGGCAG-CGAAGCAGATCGATGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTCGAA-CAGATCGAAGATGGCAGATCTTAC
75543533 CTCCCTGTA
1 CTCCCTGTA
75543542 ACGACAGTGG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
45 3 0.07
46 43 0.93
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.31
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTCGAACAGATCGAAGATGGCAGATCTTAC
Found at i:75545378 original size:24 final size:24
Alignment explanation
Indices: 75545344--75545389 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
75545334 TATATGAAAT
* *
75545344 ATAAATTTTAAATATTTTTAAACA
1 ATAAATATTAAATATTTATAAACA
*
75545368 ATAAATATTAATTATTTATAAA
1 ATAAATATTAAATATTTATAAA
75545390 ATTTAATTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATAAATATTAAATATTTATAAACA
Found at i:75545626 original size:13 final size:13
Alignment explanation
Indices: 75545608--75545641 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75545598 CTTCCCCTCT
75545608 TGAAAAGCACTTC
1 TGAAAAGCACTTC
* *
75545621 TGAAAAGTACTTT
1 TGAAAAGCACTTC
75545634 TGAAAAGC
1 TGAAAAGC
75545642 TAAAAATTTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.26
Consensus pattern (13 bp):
TGAAAAGCACTTC
Found at i:75556794 original size:23 final size:23
Alignment explanation
Indices: 75556749--75556794 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
75556739 ATGTCTTTTC
*
75556749 TAATTTTAATCTAAAAATGTAAA
1 TAATTTTAATCTAAAAATATAAA
*
75556772 TAATTTTAAATTTAAAAA-ATAAA
1 TAATTTT-AATCTAAAAATATAAA
75556795 AACTTCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (23 bp):
TAATTTTAATCTAAAAATATAAA
Found at i:75558311 original size:7 final size:7
Alignment explanation
Indices: 75558301--75558327 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
75558291 AGTTTTTAGT
75558301 TTCTAGA
1 TTCTAGA
75558308 TTCTAGA
1 TTCTAGA
75558315 TTCTAGA
1 TTCTAGA
75558322 TTCTAG
1 TTCTAG
75558328 TTGTATTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (7 bp):
TTCTAGA
Found at i:75567321 original size:16 final size:16
Alignment explanation
Indices: 75567292--75567324 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75567282 GTTTTTGAAG
75567292 TATTTTAAATAAATAT
1 TATTTTAAATAAATAT
75567308 TATTGTTAAA-AAATAT
1 TATT-TTAAATAAATAT
75567324 T
1 T
75567325 TTTGAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
TATTTTAAATAAATAT
Found at i:75568019 original size:14 final size:15
Alignment explanation
Indices: 75567994--75568022 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
75567984 AAATTGTAAA
75567994 ATAAATATAAAATAT
1 ATAAATATAAAATAT
75568009 ATAAA-ATAAAATAT
1 ATAAATATAAAATAT
75568023 TTTTACTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAAATATAAAATAT
Found at i:75570850 original size:24 final size:24
Alignment explanation
Indices: 75570822--75570867 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
75570812 CTTTTTCCCA
*
75570822 GAAAATATAAGGCTTTTATGGTGG
1 GAAAATATAAGGCTTCTATGGTGG
75570846 GAAAATATAAGGCTTCTATGGT
1 GAAAATATAAGGCTTCTATGGT
75570868 TATTTTTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.33
Consensus pattern (24 bp):
GAAAATATAAGGCTTCTATGGTGG
Found at i:75579087 original size:18 final size:18
Alignment explanation
Indices: 75579064--75579098 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75579054 GGGCTGAGAA
* *
75579064 ATTAATTTAGTTAATTTG
1 ATTAATTAAATTAATTTG
75579082 ATTAATTAAATTAATTT
1 ATTAATTAAATTAATTT
75579099 TTATTTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (18 bp):
ATTAATTAAATTAATTTG
Found at i:75581033 original size:18 final size:18
Alignment explanation
Indices: 75581010--75581045 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
75581000 AAGAAATAGC
*
75581010 AGCAAAATAATACATAAA
1 AGCAAAACAATACATAAA
75581028 AGCAAAACAATACATAAA
1 AGCAAAACAATACATAAA
75581046 TGCTGAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.67, C:0.14, G:0.06, T:0.14
Consensus pattern (18 bp):
AGCAAAACAATACATAAA
Found at i:75581408 original size:20 final size:20
Alignment explanation
Indices: 75581383--75581437 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
75581373 TGTGGTTCAA
*
75581383 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
75581403 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
*
75581423 CTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
75581438 TTTAACTCGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:75585273 original size:26 final size:27
Alignment explanation
Indices: 75585237--75585308 Score: 112
Period size: 26 Copynumber: 2.7 Consensus size: 27
75585227 AAAAATAAAA
75585237 ATTTACCAAAATATTATAA-CTTTTTT
1 ATTTACCAAAATATTATAATCTTTTTT
*
75585263 ATTTACCAAAATATATATAATTTTTTTT
1 ATTTACCAAAATAT-TATAATCTTTTTT
75585291 ATTTACCAAAATA-TATAA
1 ATTTACCAAAATATTATAA
75585309 AAAACAAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
26 19 0.44
27 5 0.12
28 19 0.44
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (27 bp):
ATTTACCAAAATATTATAATCTTTTTT
Found at i:75585307 original size:28 final size:27
Alignment explanation
Indices: 75585237--75585307 Score: 117
Period size: 28 Copynumber: 2.6 Consensus size: 27
75585227 AAAAATAAAA
75585237 ATTTACCAAAATAT-TATAACTTTTTT
1 ATTTACCAAAATATATATAACTTTTTT
*
75585263 ATTTACCAAAATATATATAATTTTTTTT
1 ATTTACCAAAATATATATAA-CTTTTTT
75585291 ATTTACCAAAATATATA
1 ATTTACCAAAATATATA
75585308 AAAAACAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 14 0.33
27 5 0.12
28 23 0.55
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (27 bp):
ATTTACCAAAATATATATAACTTTTTT
Done.