Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 246 of 313
Found at i:75890181 original size:94 final size:94
Alignment explanation
Indices: 75890009--75890191 Score: 233
Period size: 94 Copynumber: 1.9 Consensus size: 94
75889999 TAAGACTGTT
** ** * **
75890009 ATCTTAAATCGGCGAGCTGCAAGATTTTAAAACTCTTGTAAGTATAAGGTTGGGATCTTAAATTG
1 ATCTTAAATCGGCGAGCCACAAGATTCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATTG
*
75890074 GTAAACTACAAGATTTGAAAAATCTTGCA
66 GGAAACTACAAGATTTGAAAAATCTTGCA
* *
75890103 ATCTTAAATTGGCGAGCCACAATATTCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATTG
1 ATCTTAAATCGGCGAGCCACAAGATTCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATTG
** *
75890168 GCGAGTC-ATAAGATTTGAAAAATC
66 G-GAAACTACAAGATTTGAAAAATC
75890192 CTGTAAGTAT
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
94 73 0.97
95 2 0.03
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (94 bp):
ATCTTAAATCGGCGAGCCACAAGATTCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATTG
GGAAACTACAAGATTTGAAAAATCTTGCA
Found at i:75890188 original size:54 final size:54
Alignment explanation
Indices: 75890099--75890415 Score: 312
Period size: 54 Copynumber: 5.9 Consensus size: 54
75890089 TGAAAAATCT
* * * *
75890099 TGCAATCTTAAATTGGCGAGCCACAATATTCGAAAAATCTTGTAAGTATAAGGT
1 TGCAATCTTAAATCGGCGAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGC
* * ** * *
75890153 TGCAATCTTAAATTGGCGAGTCATAAGATTTGAAAAATCCTGTAAGTATAAGGC
1 TGCAATCTTAAATCGGCGAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGC
* * * * * * *
75890207 TACGA-CTTAAACCGGTGAGCCGCAAGACTCAAAAAATCTTGTAAGTATAAGGT
1 TGCAATCTTAAATCGGCGAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGC
* * * * * * * * *
75890260 TACAATCTTAAATCGGCAAACTGCAATATTCGGAAGATCTTATAAGTGTAAGGC
1 TGCAATCTTAAATCGGCGAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGC
* * ** * *
75890314 TGCGATTTTAAATCGATGAGTCGCAAGATTGGAAAAATCTTGTAAGTATAAGGC
1 TGCAATCTTAAATCGGCGAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGC
* * *
75890368 TGCAATCTTAAATCGGCAAGCCGTAAGATTCAAAAAATCTTGTAAGTA
1 TGCAATCTTAAATCGGCGAGCCGCAAGATTCGAAAAATCTTGTAAGTA
75890416 GTGAATTGAG
Statistics
Matches: 205, Mismatches: 57, Indels: 2
0.78 0.22 0.01
Matches are distributed among these distances:
53 41 0.20
54 164 0.80
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (54 bp):
TGCAATCTTAAATCGGCGAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGC
Found at i:75890366 original size:161 final size:162
Alignment explanation
Indices: 75890122--75890415 Score: 392
Period size: 161 Copynumber: 1.8 Consensus size: 162
75890112 TGGCGAGCCA
* * * * * *
75890122 CAATATTCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATTGGCGAGTCATAAGATTTGAA
1 CAATATTCGAAAAATCTTATAAGTATAAGGCTGCAATCTTAAATCGACGAGTCACAAGATTGGAA
* **
75890187 AAATCCTGTAAGTATAAGGCTACGA-CTTAAACCGGTGAGCCGCAAGACTCAAAAAATCTTGTAA
66 AAATCCTGTAAGTATAAGGCTACAATCTTAAACCGGCAAGCCGCAAGACTCAAAAAATCTTGTAA
75890251 GTATAAGGTTACAATCTTAAATCGGCAAACTG
131 GTATAAGGTTACAATCTTAAATCGGCAAACTG
* * * * * * *
75890283 CAATATTCGGAAGATCTTATAAGTGTAAGGCTGCGATTTTAAATCGATGAGTCGCAAGATTGGAA
1 CAATATTCGAAAAATCTTATAAGTATAAGGCTGCAATCTTAAATCGACGAGTCACAAGATTGGAA
* * * * *
75890348 AAATCTTGTAAGTATAAGGCTGCAATCTTAAATCGGCAAGCCGTAAGATTCAAAAAATCTTGTAA
66 AAATCCTGTAAGTATAAGGCTACAATCTTAAACCGGCAAGCCGCAAGACTCAAAAAATCTTGTAA
75890413 GTA
131 GTA
75890416 GTGAATTGAG
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
161 74 0.67
162 37 0.33
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (162 bp):
CAATATTCGAAAAATCTTATAAGTATAAGGCTGCAATCTTAAATCGACGAGTCACAAGATTGGAA
AAATCCTGTAAGTATAAGGCTACAATCTTAAACCGGCAAGCCGCAAGACTCAAAAAATCTTGTAA
GTATAAGGTTACAATCTTAAATCGGCAAACTG
Found at i:75890374 original size:108 final size:107
Alignment explanation
Indices: 75890128--75890386 Score: 297
Period size: 107 Copynumber: 2.4 Consensus size: 107
75890118 GCCACAATAT
* * * *
75890128 TCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATTGGC-GAGTCATAAGATTTGAAAAATC
1 TCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATCGGCAAACTCA-AAGATTCGAAAAATC
* *
75890192 CTGTAAGTATAAGGCTACGACTTAAACCGGTGAGCCGCAAGAC
65 CTATAAGTATAAGGCTACGACTTAAACCGATGAGCCGCAAGAC
* * * * *
75890235 TCAAAAAATCTTGTAAGTATAAGGTTACAATCTTAAATCGGCAAACTGC-AATATTCGGAAGATC
1 TCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATCGGCAAACT-CAAAGATTCGAAAAATC
* * * * * * *
75890299 TTATAAGTGTAAGGCTGCGATTTTAAATCGATGAGTCGCAAGAT
65 CTATAAGTATAAGGCTACGA-CTTAAACCGATGAGCCGCAAGAC
* *
75890343 TGGAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCGGCAA
1 TCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATCGGCAA
75890387 GCCGTAAGAT
Statistics
Matches: 127, Mismatches: 22, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
107 66 0.52
108 60 0.47
109 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (107 bp):
TCGAAAAATCTTGTAAGTATAAGGTTGCAATCTTAAATCGGCAAACTCAAAGATTCGAAAAATCC
TATAAGTATAAGGCTACGACTTAAACCGATGAGCCGCAAGAC
Found at i:75891122 original size:14 final size:14
Alignment explanation
Indices: 75891087--75891129 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
75891077 TTCTGTGTCC
*
75891087 TTTCTTCTTCT-TT
1 TTTCTTCTTTTATT
75891100 TTTC-T-TTTTATT
1 TTTCTTCTTTTATT
75891112 TTTCTTCTTTTATT
1 TTTCTTCTTTTATT
75891126 TTTC
1 TTTC
75891130 CTTGTCGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 3 0.12
12 7 0.27
13 5 0.19
14 11 0.42
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTCTTCTTTTATT
Found at i:75904466 original size:19 final size:19
Alignment explanation
Indices: 75904430--75904481 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
75904420 AGATATAGAT
75904430 TAATT-AAAATATAATAAT-
1 TAATTAAAAAT-TAATAATA
*
75904448 TCAATTAAAAATTATTAATA
1 T-AATTAAAAATTAATAATA
75904468 TAATATAAAAATTA
1 TAAT-TAAAAATTA
75904482 GTGGCATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
18 1 0.03
19 13 0.45
20 15 0.52
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
TAATTAAAAATTAATAATA
Found at i:75910342 original size:5 final size:5
Alignment explanation
Indices: 75910332--75910357 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
75910322 TCAAAGATTC
75910332 CATTT CATTT CATTT CATTT CATTT C
1 CATTT CATTT CATTT CATTT CATTT C
75910358 GTATATTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (5 bp):
CATTT
Found at i:75910383 original size:20 final size:19
Alignment explanation
Indices: 75910332--75910384 Score: 51
Period size: 20 Copynumber: 2.9 Consensus size: 19
75910322 TCAAAGATTC
75910332 CATTTCATTT--CAT-TT-
1 CATTTCATTTCACATATTA
**
75910347 CATTTCATTTCGTATATTA
1 CATTTCATTTCACATATTA
75910366 CATTTCCATTTCACATATT
1 CATTT-CATTTCACATATT
75910385 TAAATTTCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 10 0.33
17 2 0.07
18 2 0.07
19 5 0.17
20 11 0.37
ACGTcount: A:0.25, C:0.21, G:0.02, T:0.53
Consensus pattern (19 bp):
CATTTCATTTCACATATTA
Found at i:75911646 original size:15 final size:15
Alignment explanation
Indices: 75911602--75911648 Score: 55
Period size: 13 Copynumber: 3.3 Consensus size: 15
75911592 CCAATTTCCT
* *
75911602 TTATTTTATTTTTCA
1 TTATATTATATTTCA
75911617 TT-TATT-TATTT-A
1 TTATATTATATTTCA
75911629 TTATATTATATTTCA
1 TTATATTATATTTCA
75911644 TTATA
1 TTATA
75911649 ATTTGATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
12 3 0.11
13 8 0.30
14 8 0.30
15 8 0.30
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (15 bp):
TTATATTATATTTCA
Found at i:75928639 original size:18 final size:18
Alignment explanation
Indices: 75928616--75928652 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
75928606 GTCTCTTCAT
*
75928616 GAGTACCTGCCTCCTTTA
1 GAGTACCCGCCTCCTTTA
*
75928634 GAGTACCCGCCTCTTTTA
1 GAGTACCCGCCTCCTTTA
75928652 G
1 G
75928653 CATATGACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.32, G:0.19, T:0.32
Consensus pattern (18 bp):
GAGTACCCGCCTCCTTTA
Found at i:75932824 original size:24 final size:24
Alignment explanation
Indices: 75932796--75932841 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
75932786 GTAGAATAGA
*
75932796 AAGATGAAAGGTGAAGGGTTAAAG
1 AAGATGAAAGGTGAAAGGTTAAAG
*
75932820 AAGATGAAATGTGAAAGGTTAA
1 AAGATGAAAGGTGAAAGGTTAA
75932842 TAAAGATAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.33, T:0.20
Consensus pattern (24 bp):
AAGATGAAAGGTGAAAGGTTAAAG
Found at i:75932847 original size:24 final size:23
Alignment explanation
Indices: 75932795--75932848 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
75932785 AGTAGAATAG
*
75932795 AAAGATGAAAGGTGAAGGGTTAA
1 AAAGATGAAAGGTGAAAGGTTAA
*
75932818 AGAAGATGAAATGTGAAAGGTTAA
1 A-AAGATGAAAGGTGAAAGGTTAA
75932842 TAAAGAT
1 -AAAGAT
75932849 AGAAGGTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 1 0.04
24 25 0.93
25 1 0.04
ACGTcount: A:0.50, C:0.00, G:0.30, T:0.20
Consensus pattern (23 bp):
AAAGATGAAAGGTGAAAGGTTAA
Found at i:75935074 original size:31 final size:29
Alignment explanation
Indices: 75935054--75935108 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
75935044 AACCAAAATC
75935054 AAATCCA-AAAACTTAGTCCAAAAATAAA
1 AAATCCAGAAAACTTAGTCCAAAAATAAA
*
75935082 AAATCCAGAAAACTTAGT-TAAAAATAA
1 AAATCCAGAAAACTTAGTCCAAAAATAA
75935109 TTCAAACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.60, C:0.15, G:0.05, T:0.20
Consensus pattern (29 bp):
AAATCCAGAAAACTTAGTCCAAAAATAAA
Found at i:75935370 original size:34 final size:34
Alignment explanation
Indices: 75935332--75935396 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
75935322 GTCGCATCAC
* *
75935332 CAGAAACATATATTAGATCAGAATGTCATATTTT
1 CAGAAACATATATCAGATCAAAATGTCATATTTT
* *
75935366 CAGAAGCATATATCATATCAAAATGTCATAT
1 CAGAAACATATATCAGATCAAAATGTCATAT
75935397 CATATCAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (34 bp):
CAGAAACATATATCAGATCAAAATGTCATATTTT
Found at i:75936008 original size:31 final size:31
Alignment explanation
Indices: 75935961--75936030 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
75935951 TTGGAAAATG
* *
75935961 GGCCCACACGGCCCAACTAGCTAGCTCGTGT
1 GGCCTACACGGACCAACTAGCTAGCTCGTGT
75935992 GGCCTACACGGACCAACTAGCTAGCTCGTGT
1 GGCCTACACGGACCAACTAGCTAGCTCGTGT
75936023 GGCCTACA
1 GGCCTACA
75936031 TGGCCTCACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.21, C:0.36, G:0.26, T:0.17
Consensus pattern (31 bp):
GGCCTACACGGACCAACTAGCTAGCTCGTGT
Found at i:75936064 original size:29 final size:29
Alignment explanation
Indices: 75936015--75936089 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
75936005 CAACTAGCTA
* *
75936015 GCTCGTGTGGCCTACATGGCCTCACACAC
1 GCTCGTGTGGCCAACACGGCCTCACACAC
*
75936044 GCTCGTGTGGCCAACACGGCCTCACATAC
1 GCTCGTGTGGCCAACACGGCCTCACACAC
* * *
75936073 GCCCATGTGGCCCACAC
1 GCTCGTGTGGCCAACAC
75936090 AGCCCAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.19, C:0.40, G:0.24, T:0.17
Consensus pattern (29 bp):
GCTCGTGTGGCCAACACGGCCTCACACAC
Found at i:75936494 original size:26 final size:24
Alignment explanation
Indices: 75936457--75936505 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
75936447 AAGAAACTCA
**
75936457 AAGAAGAAAAGAAAGGAAGAAAAT
1 AAGAAGAAAAGAAACAAAGAAAAT
75936481 AAGAGAGAACAAGAAACAAAGAAAA
1 AAGA-AGAA-AAGAAACAAAGAAAA
75936506 GAAAATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 4 0.19
26 13 0.62
ACGTcount: A:0.71, C:0.04, G:0.22, T:0.02
Consensus pattern (24 bp):
AAGAAGAAAAGAAACAAAGAAAAT
Found at i:75937600 original size:16 final size:16
Alignment explanation
Indices: 75937579--75937612 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
75937569 AGGGATGGTG
*
75937579 TGTAATTTCATTTTTA
1 TGTAATTTCATTGTTA
75937595 TGTAATTTCATTGTTA
1 TGTAATTTCATTGTTA
75937611 TG
1 TG
75937613 GTGTGTAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.59
Consensus pattern (16 bp):
TGTAATTTCATTGTTA
Found at i:75946344 original size:58 final size:59
Alignment explanation
Indices: 75946252--75946375 Score: 178
Period size: 58 Copynumber: 2.1 Consensus size: 59
75946242 CTACTGTATT
* * * *
75946252 TTGGACTTTTACTTATGTTTTTTTTATTATAATCTTGTTGTGTTATTGTTGTTGTTTAC
1 TTGGACTTTTACTTATGTCTTTTTAATTATAATCTTGTTGTATTATAGTTGTTGTTTAC
* * *
75946311 TTGGACTTTTGCTTCT-TCTTTTTAATTATAATCTTGTTGTATTGTAGTTGTTGTTTAC
1 TTGGACTTTTACTTATGTCTTTTTAATTATAATCTTGTTGTATTATAGTTGTTGTTTAC
75946369 TTGGACT
1 TTGGACT
75946376 CATGTTGTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 44 0.76
59 14 0.24
ACGTcount: A:0.15, C:0.09, G:0.16, T:0.60
Consensus pattern (59 bp):
TTGGACTTTTACTTATGTCTTTTTAATTATAATCTTGTTGTATTATAGTTGTTGTTTAC
Found at i:75946383 original size:19 final size:19
Alignment explanation
Indices: 75946359--75946402 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
75946349 GTATTGTAGT
*
75946359 TGTTGTTTACTTGGACTCA
1 TGTTGTTTACTTGGACTAA
* *
75946378 TGTTGTTTATTTGGGCTAA
1 TGTTGTTTACTTGGACTAA
75946397 TGTTGT
1 TGTTGT
75946403 GTTTCTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.14, C:0.09, G:0.25, T:0.52
Consensus pattern (19 bp):
TGTTGTTTACTTGGACTAA
Found at i:75950489 original size:53 final size:54
Alignment explanation
Indices: 75950423--75950585 Score: 256
Period size: 53 Copynumber: 2.9 Consensus size: 54
75950413 TTCCTAGGGA
* *
75950423 ATGGTTTACGAAGCTTCTTTTGATAAGATAATTTCTTATTTCTTACTTCTTCCT
1 ATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTCTTCCT
75950477 -TGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTCTTCCT
1 ATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTCTTCCT
75950530 AGGGAATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTCTT
1 -----ATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTCTT
75950586 ACTCTTCCAT
Statistics
Matches: 101, Mismatches: 2, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
53 51 0.50
59 50 0.50
ACGTcount: A:0.23, C:0.15, G:0.14, T:0.48
Consensus pattern (54 bp):
ATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTCTTCCT
Found at i:75950546 original size:59 final size:59
Alignment explanation
Indices: 75950413--75950585 Score: 286
Period size: 59 Copynumber: 3.0 Consensus size: 59
75950403 TATAATCTTT
* *
75950413 TTCCTAGGGAATGGTTTACGAAGCTTCTTTTGATAAGATAATTTCTTATTTCTTACTTC
1 TTCCTAGGGAATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTC
75950472 TTCCT------TGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTC
1 TTCCTAGGGAATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTC
75950525 TTCCTAGGGAATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTC
1 TTCCTAGGGAATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTC
75950584 TT
1 TT
75950586 ACTCTTCCAT
Statistics
Matches: 106, Mismatches: 2, Indels: 12
0.88 0.02 0.10
Matches are distributed among these distances:
53 51 0.48
59 55 0.52
ACGTcount: A:0.23, C:0.16, G:0.15, T:0.47
Consensus pattern (59 bp):
TTCCTAGGGAATGGTTTAGGAAGCTTCTTTTGATAAGATAATTTCTTACTTCTTACTTC
Found at i:75955771 original size:39 final size:40
Alignment explanation
Indices: 75955676--75955937 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
75955666 TTGAATGATG
*
75955676 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
75955714 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
75955755 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
75955794 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
75955833 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
75955872 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
75955911 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
75955938 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:75964131 original size:6 final size:6
Alignment explanation
Indices: 75964122--75964148 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
75964112 TTAAAAATAA
75964122 ATTGAT ATTGAT ATTGAT ATTGAT ATT
1 ATTGAT ATTGAT ATTGAT ATTGAT ATT
75964149 TATGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (6 bp):
ATTGAT
Found at i:75968557 original size:30 final size:30
Alignment explanation
Indices: 75968516--75968582 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
75968506 CTTGATCAAC
*
75968516 AGATAGTCATAAAGGCGACCATACATCATT
1 AGATAGCCATAAAGGCGACCATACATCATT
* *
75968546 AGATAGCCATAAAGGCGTCCATATATCATT
1 AGATAGCCATAAAGGCGACCATACATCATT
75968576 AGATAGC
1 AGATAGC
75968583 TACAAATACA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (30 bp):
AGATAGCCATAAAGGCGACCATACATCATT
Found at i:75968729 original size:29 final size:28
Alignment explanation
Indices: 75968674--75968758 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 28
75968664 ATAGAGAACA
75968674 GCCACAAAGGCTTCCACATATAACATATC-C
1 GCCAC-AAGGC-T-CACATATAACATATCTC
* *
75968704 TGCCACTAAGGCTCACATATAGCATATTTC
1 -GCCAC-AAGGCTCACATATAACATATCTC
75968734 GCCACAAGGGCTCACATATAACATA
1 GCCACAA-GGCTCACATATAACATA
75968759 GAATAGCCAC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.04
29 34 0.71
30 2 0.04
31 10 0.21
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.22
Consensus pattern (28 bp):
GCCACAAGGCTCACATATAACATATCTC
Found at i:75968770 original size:30 final size:30
Alignment explanation
Indices: 75968643--75968805 Score: 116
Period size: 30 Copynumber: 5.4 Consensus size: 30
75968633 CAACAAAATC
* * * * *
75968643 AGCCACAAAAGCTCACATGTAATAGAGAAC
1 AGCCACAAAGGCTCACATATAACATAGAAT
***
75968673 AGCCACAAAGGCTTCCACATATAACATATCCT
1 AGCCACAAAGGC-T-CACATATAACATAGAAT
* * **
75968705 -GCCACTAAGGCTCACATATAGCATA-TTT
1 AGCCACAAAGGCTCACATATAACATAGAAT
* *
75968733 CGCCACAAGGGCTCACATATAACATAGAAT
1 AGCCACAAAGGCTCACATATAACATAGAAT
** * *
75968763 AGCCACAAAGGCTTC-CATATATTAGAGAAC
1 AGCCACAAAGGC-TCACATATAACATAGAAT
75968793 AGCCACAAAGGCT
1 AGCCACAAAGGCT
75968806 TCTATTTTTT
Statistics
Matches: 105, Mismatches: 23, Indels: 11
0.76 0.17 0.08
Matches are distributed among these distances:
28 1 0.01
29 35 0.33
30 46 0.44
31 13 0.12
32 10 0.10
ACGTcount: A:0.39, C:0.26, G:0.15, T:0.19
Consensus pattern (30 bp):
AGCCACAAAGGCTCACATATAACATAGAAT
Found at i:75969164 original size:16 final size:16
Alignment explanation
Indices: 75969143--75969188 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
75969133 TTTCATGTAG
* *
75969143 AGACTTATTGATGCAA
1 AGACTTAGTCATGCAA
75969159 AGACTTAGTCATGCAA
1 AGACTTAGTCATGCAA
75969175 AGACTCTA-TCATGC
1 AGACT-TAGTCATGC
75969189 TTTCAGACGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 25 0.93
17 2 0.07
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (16 bp):
AGACTTAGTCATGCAA
Found at i:75973419 original size:18 final size:19
Alignment explanation
Indices: 75973384--75973427 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
75973374 TTAAAATTCT
75973384 ATAA-AAAAATCATAAAAA
1 ATAATAAAAATCATAAAAA
75973402 ATAATAAAAAT-ATAAAAA
1 ATAATAAAAATCATAAAAA
*
75973420 ATATTAAA
1 ATAATAAA
75973428 TTTGAGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (19 bp):
ATAATAAAAATCATAAAAA
Found at i:75973427 original size:10 final size:9
Alignment explanation
Indices: 75973191--75973338 Score: 66
Period size: 9 Copynumber: 15.8 Consensus size: 9
75973181 TAAAAAAGCT
75973191 TATAAAAAA
1 TATAAAAAA
*
75973200 TCATAAAAAT
1 T-ATAAAAAA
*
75973210 TAT-CAAAA
1 TATAAAAAA
*
75973218 TATAAAAAG
1 TATAAAAAA
* * *
75973227 TATTAGATA
1 TATAAAAAA
75973236 T-TAAAAAA
1 TATAAAAAA
75973244 TATTTAAAAAA
1 TA--TAAAAAA
* *
75973255 TATGAAAAT
1 TATAAAAAA
* **
75973264 TGATATGAACT
1 T-ATA-AAAAA
75973275 TATAAAAAA
1 TATAAAAAA
* *
75973284 AATATAAAAC
1 TATA-AAAAA
75973294 TATAAAAAA
1 TATAAAAAA
*
75973303 TCTAATAAAA
1 TATAA-AAAA
* *
75973313 TTTAATAAAT
1 TATAA-AAAA
75973323 TATAAAAAA
1 TATAAAAAA
75973332 TATAAAA
1 TATAAAA
75973339 TTAATAAATC
Statistics
Matches: 101, Mismatches: 29, Indels: 18
0.68 0.20 0.12
Matches are distributed among these distances:
8 11 0.11
9 41 0.41
10 36 0.36
11 13 0.13
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (9 bp):
TATAAAAAA
Found at i:75973885 original size:9 final size:9
Alignment explanation
Indices: 75973868--75974124 Score: 84
Period size: 9 Copynumber: 27.8 Consensus size: 9
75973858 TTTATGGTTT
75973868 TTTTATATAA
1 TTTT-TATAA
75973878 TTTTTATAA
1 TTTTTATAA
*
75973887 GTTTGTATCAA
1 -TTTTTAT-AA
* **
75973898 TTTCAATATTT
1 TTT--TTATAA
*
75973909 TTTTTATAT
1 TTTTTATAA
*
75973918 TTTTTACAA
1 TTTTTATAA
*
75973927 TTTATTATTAT
1 TTT-TTA-TAA
*
75973938 TTTTTAAGAA
1 TTTTT-ATAA
* *
75973948 TTCTAATACA
1 TTTTTATA-A
75973958 TTTTT-TAA
1 TTTTTATAA
*
75973966 TTTTGA-ATA
1 TTTTTATA-A
*
75973975 TTTTAATAA
1 TTTTTATAA
*
75973984 GTTTTATTAA
1 TTTTTA-TAA
75973994 -TTTTATAA
1 TTTTTATAA
* *
75974002 TTTATTAGAT
1 TTT-TTATAA
75974012 TTTTTAT-A
1 TTTTTATAA
75974020 -TTTT-TAA
1 TTTTTATAA
*
75974027 TATTTATAA
1 TTTTTATAA
75974036 GTTTTTTATAA
1 --TTTTTATAA
*
75974047 TTTTGATAA
1 TTTTTATAA
*
75974056 GTTTATATCAA
1 -TTTTTAT-AA
*
75974067 TTTTAAT-A
1 TTTTTATAA
75974075 -TTTTATAA
1 TTTTTATAA
*
75974083 TATTTA-ATA
1 TTTTTATA-A
**
75974092 TTTTTATTT
1 TTTTTATAA
75974101 TTTTTATAA
1 TTTTTATAA
*
75974110 TTTTT-TTA
1 TTTTTATAA
75974118 TTTTTAT
1 TTTTTAT
75974125 GGAAAAATTA
Statistics
Matches: 181, Mismatches: 40, Indels: 53
0.66 0.15 0.19
Matches are distributed among these distances:
6 1 0.01
7 10 0.06
8 22 0.12
9 78 0.43
10 47 0.26
11 20 0.11
12 3 0.02
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:75973981 original size:27 final size:25
Alignment explanation
Indices: 75973951--75974043 Score: 75
Period size: 26 Copynumber: 3.5 Consensus size: 25
75973941 TTAAGAATTC
75973951 TAATACATTTTTTAATTTTGAATATTT
1 TAATA-ATTTTTTAATTTT-AATATTT
*
75973978 TAATAAGTTTTATTAATTTT-ATAATT
1 TAATAA-TTTT-TTAATTTTAATATTT
*
75974004 TATTAGATTTTTTATATTTTTAATA-TT
1 TAATA-ATTTTTTA-A-TTTTAATATTT
75974031 T-ATAAGTTTTTTA
1 TAATAA-TTTTTTA
75974044 TAATTTTGAT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
25 4 0.07
26 24 0.43
27 17 0.30
28 11 0.20
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.61
Consensus pattern (25 bp):
TAATAATTTTTTAATTTTAATATTT
Found at i:75974029 original size:54 final size:54
Alignment explanation
Indices: 75973957--75974112 Score: 162
Period size: 53 Copynumber: 2.9 Consensus size: 54
75973947 ATTCTAATAC
*
75973957 ATTTTTTA-ATTTTGAATATTTTAATAAGTTTTATTAATTTTATAATTTAT-T-A
1 ATTTTTTATATTTTTAATA-TTTAATAAGTTTTATTAATTTTATAATTTATATCA
*
75974009 GATTTTTTATATTTTTAATATTT-ATAAGTTTTTTATAATTTTGATAAGTTTATATCA
1 -ATTTTTTATATTTTTAATATTTAATAAGTTTTAT-TAATTTT-ATAA-TTTATATCA
* * **
75974066 A-TTTTAATATTTTATAATATTTAAT-ATTTTTATTTTTTTTATAATTT
1 ATTTTTTATATTTT-TAATATTTAATAAGTTTTATTAATTTTATAATTT
75974113 TTTTATTTTT
Statistics
Matches: 88, Mismatches: 7, Indels: 16
0.79 0.06 0.14
Matches are distributed among these distances:
52 10 0.11
53 21 0.24
54 17 0.19
55 21 0.24
56 16 0.18
57 3 0.03
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.63
Consensus pattern (54 bp):
ATTTTTTATATTTTTAATATTTAATAAGTTTTATTAATTTTATAATTTATATCA
Found at i:75974055 original size:20 final size:19
Alignment explanation
Indices: 75974020--75974059 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
75974010 ATTTTTTATA
75974020 TTTTTAATATTTATAAGTT
1 TTTTTAATATTTATAAGTT
75974039 TTTTATAAT-TTTGATAAGTT
1 TTTT-TAATATTT-ATAAGTT
75974059 T
1 T
75974060 ATATCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (19 bp):
TTTTTAATATTTATAAGTT
Found at i:75974068 original size:20 final size:20
Alignment explanation
Indices: 75973974--75974070 Score: 54
Period size: 20 Copynumber: 5.2 Consensus size: 20
75973964 AATTTTGAAT
*
75973974 ATTTTAATAAGTTTTAT-TA
1 ATTTTGATAAGTTTTATATA
75973993 ATTTT-ATAA--TTTAT-TA
1 ATTTTGATAAGTTTTATATA
* *
75974009 GATTTT-TTATATTTTTA-AT-
1 -ATTTTGATA-AGTTTTATATA
*
75974028 A-TTT-ATAAGTTTTTTATA
1 ATTTTGATAAGTTTTATATA
75974046 ATTTTGATAAG-TTTATATCA
1 ATTTTGATAAGTTTTATAT-A
75974066 ATTTT
1 ATTTT
75974071 AATATTTTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
16 12 0.19
17 14 0.22
18 7 0.11
19 14 0.22
20 16 0.25
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (20 bp):
ATTTTGATAAGTTTTATATA
Found at i:75974106 original size:18 final size:18
Alignment explanation
Indices: 75974067--75974122 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 18
75974057 TTTATATCAA
**
75974067 TTTTAATA-TTTTATAAT
1 TTTTAATATTTTTATTTT
*
75974084 ATTTAATATTTTTATTTTT
1 TTTTAATATTTTTA-TTTT
*
75974103 TTTATAATTTTTTTATTTT
1 TTT-TAATATTTTTATTTT
75974122 T
1 T
75974123 ATGGAAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 7 0.23
18 5 0.16
19 9 0.29
20 10 0.32
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTAATATTTTTATTTT
Found at i:75985251 original size:50 final size:50
Alignment explanation
Indices: 75985143--75985367 Score: 164
Period size: 50 Copynumber: 4.4 Consensus size: 50
75985133 TGTTCCAGAT
* * * * * * ** * *
75985143 ATGGTCTTACATGGGATGTTTCCTGT-ACTGCCAATGCCATAACCCAGAT
1 ATGGTCTTACATGGGATCTCTCATATCAGTGCCAACGCCATGTCCCAAAC
* * * *
75985192 ATGGTCTTACATGGGATTTCTCATATCGGTGCCTATGCCATGTCCCAAAC
1 ATGGTCTTACATGGGATCTCTCATATCAGTGCCAACGCCATGTCCCAAAC
** * * * * *
75985242 ATGGTCTTACGGGGGACCTCTTATCTCAGTGCCAACGCCATGTCCTAGAC
1 ATGGTCTTACATGGGATCTCTCATATCAGTGCCAACGCCATGTCCCAAAC
* * * *
75985292 ATGGTCTTACATGGGATCTCTCATAACCTTAATAACGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGATCTCTCAT-A--TCAGT---GCCAACGCCATGTCCCAAAC
75985348 ATGGTCTTACATGGGATCTC
1 ATGGTCTTACATGGGATCTC
75985368 ATCCTCTTAA
Statistics
Matches: 138, Mismatches: 31, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
49 22 0.16
50 75 0.54
53 3 0.02
56 38 0.28
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (50 bp):
ATGGTCTTACATGGGATCTCTCATATCAGTGCCAACGCCATGTCCCAAAC
Found at i:75987425 original size:18 final size:19
Alignment explanation
Indices: 75987390--75987426 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
75987380 CTCGAAAAAA
*
75987390 AATTCGAGTTAACTTGATT
1 AATTCGAGTTAACATGATT
75987409 AATTCGA-TTAACATGATT
1 AATTCGAGTTAACATGATT
75987427 CAAATAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (19 bp):
AATTCGAGTTAACATGATT
Found at i:75987818 original size:26 final size:26
Alignment explanation
Indices: 75987760--75987822 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
75987750 CTATTTTACC
*
75987760 CAGTAAAATTTTGACATTTTTACCCT
1 CAGTAAAATTTTGACATTTTAACCCT
*
75987786 CAATAAAATTTTGACAATTTTAACCCT
1 CAGTAAAATTTTGAC-ATTTTAACCCT
*
75987813 -GGTAAAATTT
1 CAGTAAAATTT
75987823 CAGGAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.40
Consensus pattern (26 bp):
CAGTAAAATTTTGACATTTTAACCCT
Found at i:75990734 original size:94 final size:95
Alignment explanation
Indices: 75990570--75990977 Score: 438
Period size: 94 Copynumber: 4.3 Consensus size: 95
75990560 CATTAAAAGA
* * * *
75990570 GGTTACAAGTGTAAGACCATAGCTCGACTATGGA-AACATG-GAGAGTCTGTTGGGACAGTAATC
1 GGTTACATGTGTAAGACCATAGCTCGACTAT-GACAACATGAG-GAGTCTGTCGAGACAGTAAAC
* *
75990633 -ATGGGGTAATTCACTAGGACATTAAACATGG
64 AATGGGGTAATCCACCAGGACATTAAACATGG
** * * *
75990664 GGTTACATGTGTAAGACCATATTTC-AGCTATGACAACATGAGGAGTTTGTCGGGACAATAAACA
1 GGTTACATGTGTAAGACCATAGCTCGA-CTATGACAACATGAGGAGTCTGTCGAGACAGTAAACA
* * *
75990728 AT-GGGTAGTCTATCAGGACATTAAACATGG
65 ATGGGGTAATCCACCAGGACATTAAACATGG
* * * * * * *
75990758 GGTTACATGTGTAAGGCCATATCT-TAGCTATGACAACATGGGGAGTCCGTCGAGATAGTAAA-T
1 GGTTACATGTGTAAGACCATAGCTCGA-CTATGACAACATGAGGAGTCTGTCGAGACAGTAAACA
* * * *
75990821 ATGGGGCAGTCCACCAGGAAATTAAACATGT
65 ATGGGGTAATCCACCAGGACATTAAACATGG
*
75990852 GGTTACATGTGTAAGACCATAGCTCGACTATGACAACATGAGGAGACTGTCGAGACAGTAAACAC
1 GGTTACATGTGTAAGACCATAGCTCGACTATGACAACATGAGGAGTCTGTCGAGACAGTAAACA-
* **
75990917 A--GGGTAGTCCACCAAAACATTAAACATGG
65 ATGGGGTAATCCACCAGGACATTAAACATGG
*
75990946 GGTTACATGTGTAAGATCATAGCTCGACTATG
1 GGTTACATGTGTAAGACCATAGCTCGACTATG
75990978 GCAGCATGTG
Statistics
Matches: 265, Mismatches: 40, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
93 5 0.02
94 255 0.96
95 4 0.02
96 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (95 bp):
GGTTACATGTGTAAGACCATAGCTCGACTATGACAACATGAGGAGTCTGTCGAGACAGTAAACAA
TGGGGTAATCCACCAGGACATTAAACATGG
Found at i:75994750 original size:28 final size:28
Alignment explanation
Indices: 75994687--75994868 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
75994677 ATATTAAGTC
*
75994687 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
75994714 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
75994742 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
75994770 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
75994798 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75994826 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
75994855 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75994869 CAATCTCATG
Statistics
Matches: 148, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 107 0.72
29 19 0.13
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76000030 original size:14 final size:13
Alignment explanation
Indices: 76000011--76000041 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
76000001 GATGGATTTG
76000011 TATAATTCTTATCA
1 TATAATTCTTAT-A
76000025 TATAATTCTTATA
1 TATAATTCTTATA
76000038 TATA
1 TATA
76000042 TTGTACAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.52
Consensus pattern (13 bp):
TATAATTCTTATA
Found at i:76000995 original size:13 final size:13
Alignment explanation
Indices: 76000977--76001018 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
76000967 TCGCCATGCT
76000977 ATTAAGTATTTTG
1 ATTAAGTATTTTG
76000990 ATTAAGTATTTTG
1 ATTAAGTATTTTG
*
76001003 ATGTAATTA-TTTG
1 AT-TAAGTATTTTG
76001016 ATT
1 ATT
76001019 CTAATCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 1 0.04
13 21 0.78
14 5 0.19
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
ATTAAGTATTTTG
Found at i:76001962 original size:85 final size:86
Alignment explanation
Indices: 76001819--76001986 Score: 284
Period size: 85 Copynumber: 2.0 Consensus size: 86
76001809 TTTTGTTTCC
76001819 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTGATTCTTGTCGTTCAACGATTTTATTCC-ATT
1 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTGATTCTTGTCGTTCAACGATTTTATTCCAATT
*
76001883 TTTATTTTATTTCCAAACGGG
66 TTGATTTTATTTCCAAACGGG
* * *
76001904 AAATTAAAGGTAAATAAAATTTGTTTCGGGATTGATTCTTGTTGTTCAATGATTTTATTCCAAAT
1 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTGATTCTTGTCGTTCAACGATTTTATTCC-AAT
76001969 TTTGATTTTATTTCCAAA
65 TTTGATTTTATTTCCAAA
76001987 AGCGAGTAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
85 58 0.75
87 19 0.25
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.44
Consensus pattern (86 bp):
AAATTAAAGGTAAATAAAATCTGTTTCGGGATTGATTCTTGTCGTTCAACGATTTTATTCCAATT
TTGATTTTATTTCCAAACGGG
Found at i:76002148 original size:80 final size:78
Alignment explanation
Indices: 76001915--76002141 Score: 242
Period size: 80 Copynumber: 2.9 Consensus size: 78
76001905 AATTAAAGGT
* *
76001915 AAATAAAATTTGTTTCGGGATTGATTCTTG-TTGTTCAATGATTTTATTCCAAATTTTGATTTTA
1 AAATAAAATCTGTTTCGGGATTGATTCTCGCTT-TT-AATGATTTTATTCCAAATTTTGATTTTA
* *
76001979 TTTCCAAAAGCGAGTA
64 TTT-GAAAAACGAGTA
* * * * * * * * *
76001995 AATTCAAACCTATTTCGGGATTGATTTTCACTGTTCAACGATTTTATTCCAAATTTTAATTTTAT
1 AAATAAAATCTGTTTCGGGATTGATTCTCGCT-TTTAATGATTTTATTCCAAATTTTGATTTTA-
76002060 TTTGAAAAACGAGTA
64 TTTGAAAAACGAGTA
* * *
76002075 AAATAAAATCTGTTTCAGGATTGATTCCCGCCTTTTAATGATTCTATTCCAAATTTTGATTTT-T
1 AAATAAAATCTGTTTCGGGATTGATTCTCG-CTTTTAATGATTTTATTCCAAATTTTGATTTTAT
76002139 TTG
65 TTG
76002142 GTAAAAATGA
Statistics
Matches: 118, Mismatches: 25, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
78 4 0.03
80 106 0.90
81 7 0.06
82 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (78 bp):
AAATAAAATCTGTTTCGGGATTGATTCTCGCTTTTAATGATTTTATTCCAAATTTTGATTTTATT
TGAAAAACGAGTA
Found at i:76019978 original size:21 final size:21
Alignment explanation
Indices: 76019936--76019989 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
76019926 GTTGGTAAGA
*
76019936 AGAAAGTTGCTGCTGCAAAAG
1 AGAAAGTTGCTACTGCAAAAG
*
76019957 AGAAAGTTGTTACTG-AAGAAG
1 AGAAAGTTGCTACTGCAA-AAG
76019978 A-AGAAGTTGCTA
1 AGA-AAGTTGCTA
76019990 AAAATGAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.41, C:0.09, G:0.28, T:0.22
Consensus pattern (21 bp):
AGAAAGTTGCTACTGCAAAAG
Found at i:76025109 original size:12 final size:12
Alignment explanation
Indices: 76025094--76025145 Score: 58
Period size: 12 Copynumber: 4.7 Consensus size: 12
76025084 AATAACACAA
*
76025094 AAAATAACACCC
1 AAAACAACACCC
76025106 AAAACAACA-CC
1 AAAACAACACCC
*
76025117 --AA-AACAGCC
1 AAAACAACACCC
76025126 AAAACAACACCC
1 AAAACAACACCC
76025138 AAAACAAC
1 AAAACAAC
76025146 CTACAAAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 4 0.12
9 4 0.12
11 4 0.12
12 22 0.65
ACGTcount: A:0.62, C:0.35, G:0.02, T:0.02
Consensus pattern (12 bp):
AAAACAACACCC
Found at i:76025127 original size:20 final size:21
Alignment explanation
Indices: 76025099--76025143 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
76025089 CACAAAAAAT
76025099 AACACCCAAAACAACA-CCAA
1 AACACCCAAAACAACACCCAA
*
76025119 AACAGCCAAAACAACACCCAA
1 AACACCCAAAACAACACCCAA
76025140 AACA
1 AACA
76025144 ACCTACAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.60, C:0.38, G:0.02, T:0.00
Consensus pattern (21 bp):
AACACCCAAAACAACACCCAA
Found at i:76030784 original size:28 final size:29
Alignment explanation
Indices: 76030720--76030790 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 29
76030710 TCTAAATAGG
76030720 TATATATAATACATATTTTTGCATCTCGATA
1 TATATATAAT--ATATTTTTGCATCTCGATA
* * *
76030751 AATATATAATATATTTTTG-GTCTTG-T-
1 TATATATAATATATTTTTGCATCTCGATA
76030777 TATATATAATATAT
1 TATATATAATATAT
76030791 ATATGCCTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 13 0.36
27 1 0.03
28 4 0.11
29 9 0.25
31 9 0.25
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (29 bp):
TATATATAATATATTTTTGCATCTCGATA
Found at i:76030791 original size:28 final size:29
Alignment explanation
Indices: 76030720--76030792 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 29
76030710 TCTAAATAGG
*
76030720 TATATATAATACATATTTTTGCATCTCGA
1 TATATATAATATATATTTTTGCATCTCGA
* * * *
76030749 TAAATAT-ATAATATATTTTTG-GTCTTGT
1 TATATATAAT-ATATATTTTTGCATCTCGA
76030777 TATATATAATATATAT
1 TATATATAATATATAT
76030793 ATGCCTCTAG
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
28 18 0.50
29 18 0.50
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (29 bp):
TATATATAATATATATTTTTGCATCTCGA
Found at i:76033729 original size:7 final size:7
Alignment explanation
Indices: 76033683--76033752 Score: 52
Period size: 7 Copynumber: 9.6 Consensus size: 7
76033673 TTTAATTTAA
76033683 TTTTCTT
1 TTTTCTT
76033690 TTCTTCTT
1 TT-TTCTT
*
76033698 TCTTCTT
1 TTTTCTT
*
76033705 TCTTCTT
1 TTTTCTT
*
76033712 TTCTCGTTT
1 TTTTC--TT
76033721 TTTTCTT
1 TTTTCTT
* *
76033728 TTTCCCTA
1 TTT-TCTT
76033736 TTTTC-T
1 TTTTCTT
76033742 TTTTCTT
1 TTTTCTT
76033749 TTTT
1 TTTT
76033753 TTGGTTCATC
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
6 5 0.10
7 28 0.56
8 11 0.22
9 6 0.12
ACGTcount: A:0.01, C:0.21, G:0.01, T:0.76
Consensus pattern (7 bp):
TTTTCTT
Found at i:76033754 original size:15 final size:15
Alignment explanation
Indices: 76033683--76033754 Score: 63
Period size: 15 Copynumber: 4.5 Consensus size: 15
76033673 TTTAATTTAA
76033683 TTTTCTTTTCTTCTTTC
1 TTTT-TTTTCTT-TTTC
*
76033700 TTCTTTCTTCTTTTCTC
1 TT-TTTTTTCTTTT-TC
*
76033717 GTTTTTTTCTTTTTC
1 TTTTTTTTCTTTTTC
** *
76033732 CCTATTTTCTTTTTC
1 TTTTTTTTCTTTTTC
76033747 TTTTTTTT
1 TTTTTTTT
76033755 GGTTCATCTC
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
15 19 0.43
16 12 0.27
17 11 0.25
18 2 0.05
ACGTcount: A:0.01, C:0.21, G:0.01, T:0.76
Consensus pattern (15 bp):
TTTTTTTTCTTTTTC
Found at i:76034128 original size:18 final size:18
Alignment explanation
Indices: 76034101--76034135 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76034091 GAATTTCGTT
*
76034101 GTTTTAGTTGTTTAATTG
1 GTTTTAGTTGGTTAATTG
*
76034119 GTTTTGGTTGGTTAATT
1 GTTTTAGTTGGTTAATT
76034136 TAGGCTCCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.26, T:0.60
Consensus pattern (18 bp):
GTTTTAGTTGGTTAATTG
Found at i:76034461 original size:29 final size:29
Alignment explanation
Indices: 76034429--76034541 Score: 199
Period size: 29 Copynumber: 3.9 Consensus size: 29
76034419 GACACAGGCA
76034429 TGTGTTAGGCCGTGTGAGGCACACGAACG
1 TGTGTTAGGCCGTGTGAGGCACACGAACG
76034458 TGTGTTAGGCCGTGTGAGGCACACGAACG
1 TGTGTTAGGCCGTGTGAGGCACACGAACG
76034487 TGTGTTAGGCCGTGTGAGGCACACGAACG
1 TGTGTTAGGCCGTGTGAGGCACACGAACG
* *
76034516 TGTGTCAGGCCGTGTGGAGCCACACG
1 TGTGTTAGGCCGTGT-GAGGCACACG
76034542 GGTTAGCTAC
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
29 72 0.89
30 9 0.11
ACGTcount: A:0.19, C:0.22, G:0.38, T:0.20
Consensus pattern (29 bp):
TGTGTTAGGCCGTGTGAGGCACACGAACG
Found at i:76038368 original size:35 final size:35
Alignment explanation
Indices: 76038322--76038567 Score: 205
Period size: 35 Copynumber: 7.0 Consensus size: 35
76038312 TCACTAATTA
*
76038322 TTCGTCGGTTTATCCGACTAGCGCTAGGCACAACT
1 TTCGTCGGTTTATCCGACTAGCGCTGGGCACAACT
* * * * *
76038357 TTCGTCAGTTTATCTGACTAGTGCTGAGCAC-ACA
1 TTCGTCGGTTTATCCGACTAGCGCTGGGCACAACT
*
76038391 TTCGTCGGTTTATCCGACTAGTGCTGGGCACAACT
1 TTCGTCGGTTTATCCGACTAGCGCTGGGCACAACT
* * * *
76038426 TTCATCAGTTTATCTGACTAGTGCTGGGCACATA-T
1 TTCGTCGGTTTATCCGACTAGCGCTGGGCACA-ACT
* * *
76038461 TT-GTCGGTTTATCC-AGCTAGCACTGGGCGCAAAT
1 TTCGTCGGTTTATCCGA-CTAGCGCTGGGCACAACT
* * * * *
76038495 ATT-GTCGGTTTATCCAACAAGAGTTGGGCTCACTAATT
1 -TTCGTCGGTTTATCCGACTAGCGCTGGG--CAC-AACT
* *
76038533 ATTCGTCGGTTTATCCGACTAGCGCTAGGCGCAAC
1 -TTCGTCGGTTTATCCGACTAGCGCTGGGCACAAC
76038568 CTTTGTTATT
Statistics
Matches: 169, Mismatches: 32, Indels: 19
0.77 0.15 0.09
Matches are distributed among these distances:
33 2 0.01
34 52 0.31
35 81 0.48
36 4 0.02
37 4 0.02
38 6 0.04
39 20 0.12
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (35 bp):
TTCGTCGGTTTATCCGACTAGCGCTGGGCACAACT
Found at i:76038633 original size:69 final size:70
Alignment explanation
Indices: 76038321--76038635 Score: 309
Period size: 69 Copynumber: 4.5 Consensus size: 70
76038311 CTCACTAATT
* * *
76038321 ATTCGTCGGTTTATCCGACTAGCGCTAGGCACAACTTTCGTCAGTTTATCTGACTAGTGCTGAGC
1 ATTCGTCGGTTTATCCGACTAGCGCTGGGCGCAACTTTCGTCAGTTTATCTGACTAGTGCTGGGC
76038386 ACAC-
66 ACACA
* * *
76038390 ATTCGTCGGTTTATCCGACTAGTGCTGGGCACAACTTTCATCAGTTTATCTGACTAGTGCTGGGC
1 ATTCGTCGGTTTATCCGACTAGCGCTGGGCGCAACTTTCGTCAGTTTATCTGACTAGTGCTGGGC
*
76038455 ACA-T
66 ACACA
* * * * ** * * *
76038459 ATTTGTCGGTTTATCC-AGCTAGCACTGGGCGCAAATATT-GTCGGTTTATCCAACAAGAGTTGG
1 ATTCGTCGGTTTATCCGA-CTAGCGCTGGGCGCAACT-TTCGTCAGTTTATCTGACTAGTGCTGG
*
76038522 GCTCACTAA
64 GCACAC--A
* * * *
76038531 TTATTCGTCGGTTTATCCGACTAGCGCTAGGCGCAACCTTT-GTTATTTTATCTTACTAGTGCTG
1 --ATTCGTCGGTTTATCCGACTAGCGCTGGGCGCAA-CTTTCGTCAGTTTATCTGACTAGTGCTG
76038595 GGCACACA
63 GGCACACA
* * *
76038603 ATT-GTCAGTTTATCCCACTAGCACTGGGCGCAA
1 ATTCGTCGGTTTATCCGACTAGCGCTGGGCGCAA
76038636 ACTCTTTTGC
Statistics
Matches: 201, Mismatches: 35, Indels: 20
0.79 0.14 0.08
Matches are distributed among these distances:
68 1 0.00
69 140 0.70
70 5 0.02
72 1 0.00
74 52 0.26
75 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (70 bp):
ATTCGTCGGTTTATCCGACTAGCGCTGGGCGCAACTTTCGTCAGTTTATCTGACTAGTGCTGGGC
ACACA
Found at i:76047402 original size:22 final size:22
Alignment explanation
Indices: 76047374--76047417 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
76047364 GTGAACAACT
76047374 CACCCTTGTATTTATACTAGGG
1 CACCCTTGTATTTATACTAGGG
76047396 CACCCTTGTATTTATACTAGGG
1 CACCCTTGTATTTATACTAGGG
76047418 TTGCCACCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (22 bp):
CACCCTTGTATTTATACTAGGG
Found at i:76058657 original size:31 final size:30
Alignment explanation
Indices: 76058621--76058725 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 30
76058611 TATACTAAAT
*
76058621 TTAATTTAATATTTATCTAGACAGTAATTTA
1 TTAATTTAATATTTATCTAGATA-TAATTTA
* * *
76058652 TTAATTTAATATTAATAT-GATAT-ATTAAA
1 TTAATTTAATATTTATCTAGATATAATT-TA
*
76058681 TTTAATTTAATATTTATCTAGATAATATTTTA
1 -TTAATTTAATATTTATCTAGAT-ATAATTTA
76058713 TTAATTTAATATT
1 TTAATTTAATATT
76058726 AATATGGTTA
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
28 3 0.05
29 2 0.03
30 19 0.31
31 32 0.52
32 3 0.05
33 2 0.03
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (30 bp):
TTAATTTAATATTTATCTAGATATAATTTA
Found at i:76058666 original size:11 final size:11
Alignment explanation
Indices: 76058650--76058728 Score: 53
Period size: 11 Copynumber: 7.6 Consensus size: 11
76058640 GACAGTAATT
76058650 TATTAATTTAA
1 TATTAATTTAA
* *
76058661 TATTAATATGA
1 TATTAATTTAA
*
76058672 TA-T-ATTAAA
1 TATTAATTTAA
76058681 T-TTAATTTAA
1 TATTAATTTAA
* *
76058691 TATTTATCTAGA
1 TATTAATTTA-A
*
76058703 TAAT-ATTT--
1 TATTAATTTAA
76058711 TATTAATTTAA
1 TATTAATTTAA
76058722 TATTAAT
1 TATTAAT
76058729 ATGGTTAATT
Statistics
Matches: 50, Mismatches: 11, Indels: 14
0.67 0.15 0.19
Matches are distributed among these distances:
8 3 0.06
9 9 0.18
10 7 0.14
11 27 0.54
12 4 0.08
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:76058670 original size:61 final size:61
Alignment explanation
Indices: 76058599--76058731 Score: 230
Period size: 61 Copynumber: 2.2 Consensus size: 61
76058589 ATTTATCTTG
*
76058599 ATATTAATATGATATACTAAATTTAATTTAATATTTATCTAGACAGTAATTTATTAATTTA
1 ATATTAATATGATATACTAAATTTAATTTAATATTTATCTAGACAATAATTTATTAATTTA
* * *
76058660 ATATTAATATGATATATTAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
1 ATATTAATATGATATACTAAATTTAATTTAATATTTATCTAGACAATAATTTATTAATTTA
76058721 ATATTAATATG
1 ATATTAATATG
76058732 GTTAATTCTA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 68 1.00
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (61 bp):
ATATTAATATGATATACTAAATTTAATTTAATATTTATCTAGACAATAATTTATTAATTTA
Found at i:76059392 original size:3 final size:3
Alignment explanation
Indices: 76059386--76059423 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
76059376 ATCAAAGACA
*
76059386 AAT AAT AAT AAT ATT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
76059424 AAGATACTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:76065782 original size:39 final size:40
Alignment explanation
Indices: 76065739--76065842 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
76065729 TCCTTATGCT
*
76065739 ATTACAGCTCTATTCCATTCAACCAAACACAAGAA-TA-CC
1 ATTAC-GCTCTATTCCATTCAACCAAACAAAAGAATTACCC
76065778 ATTACGCCTCTATTCCATTCCATTCAACCAAACAAAAGAATTACCC
1 ATTACG-CTC---T--ATTCCATTCAACCAAACAAAAGAATTACCC
76065824 ATTACGCATCTATTCCATT
1 ATTACGC-TCTATTCCATT
76065843 ACAGCGAACC
Statistics
Matches: 55, Mismatches: 1, Indels: 16
0.76 0.01 0.22
Matches are distributed among these distances:
38 1 0.02
39 8 0.15
41 8 0.15
42 1 0.02
43 1 0.02
44 23 0.42
45 3 0.05
46 10 0.18
ACGTcount: A:0.37, C:0.31, G:0.05, T:0.28
Consensus pattern (40 bp):
ATTACGCTCTATTCCATTCAACCAAACAAAAGAATTACCC
Found at i:76065817 original size:44 final size:46
Alignment explanation
Indices: 76065750--76065842 Score: 154
Period size: 44 Copynumber: 2.1 Consensus size: 46
76065740 TTACAGCTCT
* *
76065750 ATTCCATTCAACCAAACACAAGAA-TA-CCATTACGCCTCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCCATTACGCATCTATTCC
76065794 ATTCCATTCAACCAAACAAAAGAATTACCCATTACGCATCTATTCC
1 ATTCCATTCAACCAAACAAAAGAATTACCCATTACGCATCTATTCC
76065840 ATT
1 ATT
76065843 ACAGCGAACC
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 23 0.51
45 2 0.04
46 20 0.44
ACGTcount: A:0.38, C:0.31, G:0.04, T:0.27
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAAAAGAATTACCCATTACGCATCTATTCC
Found at i:76065853 original size:46 final size:44
Alignment explanation
Indices: 76065758--76065855 Score: 126
Period size: 46 Copynumber: 2.2 Consensus size: 44
76065748 CTATTCCATT
* * * *
76065758 CAACCAAACACAAGAATACCATTACGCCTCTATTCCATTCCATT
1 CAACCAAACAAAAGAATACCATTACGCATCTATTCCATTACATG
76065802 CAACCAAACAAAAGAATTACCCATTACGCATCTATTCCATTACA-G
1 CAACCAAACAAAAGAA-TA-CCATTACGCATCTATTCCATTACATG
76065847 CGAACCAAA
1 C-AACCAAA
76065856 TGTCCCCTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 15 0.32
45 3 0.06
46 29 0.62
ACGTcount: A:0.41, C:0.32, G:0.06, T:0.21
Consensus pattern (44 bp):
CAACCAAACAAAAGAATACCATTACGCATCTATTCCATTACATG
Found at i:76068711 original size:3 final size:3
Alignment explanation
Indices: 76068703--76068736 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
76068693 TTTTCCTAAT
76068703 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC A
76068737 CCTTCTTCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ATC
Found at i:76069536 original size:15 final size:14
Alignment explanation
Indices: 76069462--76069540 Score: 70
Period size: 15 Copynumber: 5.4 Consensus size: 14
76069452 GGGCTTTTTT
* *
76069462 AGAGAAAAAGAAGA
1 AGAGAAAGAGAAAA
*
76069476 AG-GAAAGAAAGAAA
1 AGAGAAAGAGA-AAA
*
76069490 AGAGATAAGAAAAAA
1 AGAGA-AAGAGAAAA
76069505 AGAGAAAAGAGAAAA
1 AGAG-AAAGAGAAAA
*
76069520 AGAGAAAGACGATAA
1 AGAGAAAGA-GAAAA
76069535 AGAGAA
1 AGAGAA
76069541 GGAAAGAAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
13 6 0.11
14 11 0.20
15 31 0.56
16 7 0.13
ACGTcount: A:0.70, C:0.01, G:0.27, T:0.03
Consensus pattern (14 bp):
AGAGAAAGAGAAAA
Found at i:76069864 original size:21 final size:21
Alignment explanation
Indices: 76069840--76069880 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76069830 TTGTATAAGG
* *
76069840 TTTTGACTTTTTTTTATATTT
1 TTTTAACTTTTTTATATATTT
*
76069861 TTTTAAGTTTTTTATATATT
1 TTTTAACTTTTTTATATATT
76069881 CATTAGTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTTAACTTTTTTATATATTT
Found at i:76069871 original size:19 final size:19
Alignment explanation
Indices: 76069848--76069903 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
76069838 GGTTTTGACT
76069848 TTTTTTTATATTTTTTTAAG
1 TTTTTTTATATTTTTTT-AG
**
76069868 -TTTTTTATATATTCATTAG
1 TTTTTTTATAT-TTTTTTAG
76069887 TTTTTTTATATTTTTTT
1 TTTTTTTATATTTTTTT
76069904 TGAAATGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.75
Consensus pattern (19 bp):
TTTTTTTATATTTTTTTAG
Found at i:76080437 original size:21 final size:21
Alignment explanation
Indices: 76080411--76080451 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
76080401 AGACTTTTCA
76080411 AACACTTTTACATGATTTAAT
1 AACACTTTTACATGATTTAAT
76080432 AACACTTTTACATGATTTAA
1 AACACTTTTACATGATTTAA
76080452 CTTTAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (21 bp):
AACACTTTTACATGATTTAAT
Found at i:76081356 original size:3 final size:3
Alignment explanation
Indices: 76081348--76081407 Score: 63
Period size: 3 Copynumber: 21.0 Consensus size: 3
76081338 CCTAGGCAGT
* * *
76081348 AGA AGA AGA AG- AGA AAA AGA AGA AGA AG- AGA AGA A-A TGG AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
76081393 AAA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA
76081408 GAAAATTGAA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
2 5 0.11
3 41 0.89
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:76081379 original size:11 final size:10
Alignment explanation
Indices: 76081359--76081410 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 10
76081349 GAAGAAGAAG
76081359 AGAAAA-AGA
1 AGAAAAGAGA
76081368 AGAAGAAGAGA
1 AGAA-AAGAGA
*
76081379 AGAAATGGAGA
1 AGAAA-AGAGA
76081390 AGAAAA-AGA
1 AGAAAAGAGA
76081399 AGAAGAAGAGA
1 AGAA-AAGAGA
76081410 A
1 A
76081411 AATTGAAGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
9 11 0.31
10 5 0.14
11 20 0.56
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (10 bp):
AGAAAAGAGA
Found at i:76082472 original size:40 final size:41
Alignment explanation
Indices: 76082425--76082505 Score: 112
Period size: 40 Copynumber: 2.0 Consensus size: 41
76082415 GTAACAGTTT
* * *
76082425 GGGCCTTAGCCCATTTCAGTA-CAGTATCAAAT-ATGCAGTA
1 GGGCCTTAGCCCATTACAATATCAGTAGC-AATCATGCAGTA
76082465 GGGCCTTAGCCCATTACAATATCAGTAGCAATCATGCAGTA
1 GGGCCTTAGCCCATTACAATATCAGTAGCAATCATGCAGTA
76082506 TTCAGTAACA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
40 22 0.61
41 14 0.39
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (41 bp):
GGGCCTTAGCCCATTACAATATCAGTAGCAATCATGCAGTA
Found at i:76082978 original size:18 final size:18
Alignment explanation
Indices: 76082955--76082999 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
76082945 ATTTGGTCTG
*
76082955 CCCGTGTGGACCGACACA
1 CCCGTGTGGACCCACACA
*
76082973 CCCGTGTGGACCCACACG
1 CCCGTGTGGACCCACACA
*
76082991 CCTGTGTGG
1 CCCGTGTGG
76083000 CTCACTTGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.16, C:0.38, G:0.31, T:0.16
Consensus pattern (18 bp):
CCCGTGTGGACCCACACA
Found at i:76086188 original size:17 final size:17
Alignment explanation
Indices: 76086149--76086181 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76086139 TCTGGACCAA
76086149 GCGGGCTAGGCTTTTGG
1 GCGGGCTAGGCTTTTGG
76086166 GCGGGCTAGGCTTTTG
1 GCGGGCTAGGCTTTTG
76086182 TGTGGGCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.18, G:0.45, T:0.30
Consensus pattern (17 bp):
GCGGGCTAGGCTTTTGG
Found at i:76088842 original size:53 final size:53
Alignment explanation
Indices: 76088762--76088912 Score: 268
Period size: 53 Copynumber: 2.9 Consensus size: 53
76088752 ACCCAAGTTT
*
76088762 TTACACACGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACCCCTGTACC
1 TTACACAAGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACCCCTGTACC
76088815 TTACACAAGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACCCCTGTACC
1 TTACACAAGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACCCCTGTACC
* *
76088868 TTACACAAGGCCTAGCACACGGGCGTGTGG-TTGGTCGTGTGACCC
1 TTACACAAGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACCC
76088913 AAGTCAAAGA
Statistics
Matches: 95, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
52 13 0.14
53 82 0.86
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (53 bp):
TTACACAAGGCCTAGCACACGGGCGTGTGGCTTGGCCATGTGACCCCTGTACC
Found at i:76090555 original size:16 final size:16
Alignment explanation
Indices: 76090515--76090560 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
76090505 CCCTTATAAA
*
76090515 AAATGTTATAAATTAT
1 AAATGTTATATATTAT
*
76090531 AAAAGTTATATATTAT
1 AAATGTTATATATTAT
76090547 AAAT-TT-TATATTAT
1 AAATGTTATATATTAT
76090561 TTTGACCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 8 0.30
15 2 0.07
16 17 0.63
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (16 bp):
AAATGTTATATATTAT
Found at i:76091912 original size:13 final size:13
Alignment explanation
Indices: 76091894--76091918 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76091884 ATTTTTTTAA
76091894 TTTTAATTAATAT
1 TTTTAATTAATAT
76091907 TTTTAATTAATA
1 TTTTAATTAATA
76091919 ACTCATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAATTAATAT
Found at i:76098387 original size:13 final size:13
Alignment explanation
Indices: 76098369--76098393 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76098359 AATAATTTAT
76098369 TATTTAAAATATA
1 TATTTAAAATATA
76098382 TATTTAAAATAT
1 TATTTAAAATAT
76098394 CACAATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TATTTAAAATATA
Found at i:76102847 original size:26 final size:26
Alignment explanation
Indices: 76102818--76102868 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
76102808 AAAATAATCA
*
76102818 TTAACGTATCAAATAATTATTTTTAT
1 TTAACATATCAAATAATTATTTTTAT
*
76102844 TTAATATATCAAATAATTATTTTTA
1 TTAACATATCAAATAATTATTTTTA
76102869 GAAAGGGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (26 bp):
TTAACATATCAAATAATTATTTTTAT
Found at i:76103827 original size:21 final size:22
Alignment explanation
Indices: 76103802--76103845 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
76103792 ATAAAAAACC
76103802 CTAATATTTTTCCA-TGTTTTG
1 CTAATATTTTTCCACTGTTTTG
* *
76103823 CTAATGTTTTTCCACTTTTTTG
1 CTAATATTTTTCCACTGTTTTG
76103845 C
1 C
76103846 CACTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.16, C:0.18, G:0.09, T:0.57
Consensus pattern (22 bp):
CTAATATTTTTCCACTGTTTTG
Found at i:76110709 original size:13 final size:13
Alignment explanation
Indices: 76110674--76110711 Score: 67
Period size: 14 Copynumber: 2.8 Consensus size: 13
76110664 GATATATTTG
76110674 TAATTTGAAAACT
1 TAATTTGAAAACT
76110687 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
76110701 TAATTTGAAAA
1 TAATTTGAAAA
76110712 TTTGGAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.47, C:0.05, G:0.11, T:0.37
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:76111049 original size:69 final size:69
Alignment explanation
Indices: 76110948--76111136 Score: 227
Period size: 69 Copynumber: 2.7 Consensus size: 69
76110938 TTCACTTGTC
* *
76110948 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACA
1 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATCATTTT-TTGCAGGGAATCTCTCCTGTCCACA
76111013 CATCA
65 CATCA
* * * * * * *
76111018 -TTTCTTGTAGGGAATTTTTCATGTTCACGCATCATTTCTTGCAGGGAACCTTTCCTGTCCACGC
1 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATCATTTTTTGCAGGGAATCTCTCCTGTCCACAC
*
76111082 ATTA
66 ATCA
* * * * *
76111086 TTTTGTTGCAGGGAATCTCTCCTGTTCACACATCATTTTTTACAGGGAATC
1 TTTTCTTGCAGGGAATATTTCCTGTTCACGCATCATTTTTTGCAGGGAATC
76111137 ATTTCTGGTA
Statistics
Matches: 99, Mismatches: 19, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
68 25 0.25
69 74 0.75
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (69 bp):
TTTTCTTGCAGGGAATATTTCCTGTTCACGCATCATTTTTTGCAGGGAATCTCTCCTGTCCACAC
ATCA
Found at i:76111133 original size:103 final size:103
Alignment explanation
Indices: 76110949--76111135 Score: 320
Period size: 103 Copynumber: 1.8 Consensus size: 103
76110939 TCACTTGTCT
* *
76110949 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAACATTTCCTGTCCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
**
76111014 ATCATTTCTTGTAGGGAATTTTTCATGTTCACGCATCA
66 ATCATTTCTTACAGGGAATTTTTCATGTTCACGCATCA
*
76111052 TTTCTTGCAGGGAACCTTTCCTGTCCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAACATTTCCTGTCCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
*
76111117 ATCATTTTTTACAGGGAAT
66 ATCATTTCTTACAGGGAAT
76111136 CATTTCTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 78 1.00
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (103 bp):
TTTCTTGCAGGGAACATTTCCTGTCCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
ATCATTTCTTACAGGGAATTTTTCATGTTCACGCATCA
Found at i:76114620 original size:21 final size:23
Alignment explanation
Indices: 76114596--76114638 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
76114586 TTAATTTTTT
*
76114596 AAAACATATTT-CTTCT-TTTAG
1 AAAACAGATTTGCTTCTGTTTAG
*
76114617 AAAAGAGATTTGCTTCTGTTTA
1 AAAACAGATTTGCTTCTGTTTA
76114639 TAATTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (23 bp):
AAAACAGATTTGCTTCTGTTTAG
Found at i:76118794 original size:13 final size:14
Alignment explanation
Indices: 76118761--76118804 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
76118751 AGATCAACAC
76118761 AGCCCAATCAGCCTA
1 AGCCCAA-CAGCCTA
*
76118776 AGCCCAACA-CCTT
1 AGCCCAACAGCCTA
76118789 AGCCCAACTAGCCTA
1 AGCCCAAC-AGCCTA
76118804 A
1 A
76118805 ACAAGCAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
13 11 0.44
14 3 0.12
15 11 0.44
ACGTcount: A:0.34, C:0.41, G:0.11, T:0.14
Consensus pattern (14 bp):
AGCCCAACAGCCTA
Found at i:76122153 original size:21 final size:21
Alignment explanation
Indices: 76122128--76122262 Score: 112
Period size: 21 Copynumber: 6.4 Consensus size: 21
76122118 GTGTTTTACT
* *
76122128 TTTTGTTTAGCTCTTATGAGC
1 TTTTGTTCAACTCTTATGAGC
* *
76122149 TTTTGTTTAACTCATATGAG-
1 TTTTGTTCAACTCTTATGAGC
*
76122169 TTTCTGTTCAGCTCTTATGAGC
1 TTT-TGTTCAACTCTTATGAGC
* * *
76122191 TTCTATTAAACTCTTATGAG-
1 TTTTGTTCAACTCTTATGAGC
* *
76122211 TTTCTGTTCAGCTCTTACGAGC
1 TTT-TGTTCAACTCTTATGAGC
* * *
76122233 TTCTGCTCAACTCTTACGAGC
1 TTTTGTTCAACTCTTATGAGC
*
76122254 TTTTATTCA
1 TTTTGTTCA
76122263 GCTTTCGAGC
Statistics
Matches: 90, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
20 5 0.06
21 81 0.90
22 4 0.04
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.46
Consensus pattern (21 bp):
TTTTGTTCAACTCTTATGAGC
Found at i:76122245 original size:42 final size:42
Alignment explanation
Indices: 76122131--76122281 Score: 173
Period size: 42 Copynumber: 3.6 Consensus size: 42
76122121 TTTTACTTTT
* * * * *
76122131 TGTTTAGCTCTTATGAGCTTTTGTTTAACTCATATGAGTTTC
1 TGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAGTTTC
* *
76122173 TGTTCAGCTCTTATGAGCTTCTATTAAACTCTTATGAGTTTC
1 TGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAGTTTC
* * *
76122215 TGTTCAGCTCTTACGAGCTTCTGCTCAACTCTTACGAGCTTT-
1 TGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAG-TTTC
*
76122257 TATTCAGCT-TT-CGAGCTTCTGTTAA
1 TGTTCAGCTCTTACGAGCTTCTGTTAA
76122282 CTATGTACTC
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
40 12 0.13
41 2 0.02
42 78 0.82
43 3 0.03
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (42 bp):
TGTTCAGCTCTTACGAGCTTCTGTTAAACTCTTATGAGTTTC
Found at i:76122248 original size:63 final size:63
Alignment explanation
Indices: 76122138--76122260 Score: 149
Period size: 63 Copynumber: 2.0 Consensus size: 63
76122128 TTTTGTTTAG
* * * * * *
76122138 CTCTTATGAGCTTTTGTTTAACTCATATGAGTTTCTGTTCAGCTCTTATGAGCTTCTATTAAA
1 CTCTTATGAGCTTTTGTTCAACTCATACGAGCTTCTGCTCAACTCTTACGAGCTTCTATTAAA
* * *
76122201 CTCTTATGAG-TTTCTGTTCAGCTCTTACGAGCTTCTGCTCAACTCTTACGAGCTTTTATT
1 CTCTTATGAGCTTT-TGTTCAACTCATACGAGCTTCTGCTCAACTCTTACGAGCTTCTATT
76122261 CAGCTTTCGA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
62 3 0.06
63 47 0.94
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.45
Consensus pattern (63 bp):
CTCTTATGAGCTTTTGTTCAACTCATACGAGCTTCTGCTCAACTCTTACGAGCTTCTATTAAA
Found at i:76125752 original size:31 final size:31
Alignment explanation
Indices: 76125717--76125777 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
76125707 ATTTAATTTA
*
76125717 ATTTAATTAATTATAGTATTTGTACTTTTTG
1 ATTTAATCAATTATAGTATTTGTACTTTTTG
* *
76125748 ATTTAATCAATTTTAGTTTTTGTACTTTTT
1 ATTTAATCAATTATAGTATTTGTACTTTTT
76125778 AAAATATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.61
Consensus pattern (31 bp):
ATTTAATCAATTATAGTATTTGTACTTTTTG
Found at i:76126562 original size:3 final size:3
Alignment explanation
Indices: 76126554--76126578 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
76126544 CAATCACAGT
76126554 AGC AGC AGC AGC AGC AGC AGC AGC A
1 AGC AGC AGC AGC AGC AGC AGC AGC A
76126579 ATGTAAGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.32, T:0.00
Consensus pattern (3 bp):
AGC
Found at i:76135991 original size:16 final size:16
Alignment explanation
Indices: 76135970--76136032 Score: 81
Period size: 16 Copynumber: 3.7 Consensus size: 16
76135960 GGTTTTCAGT
76135970 AAAAAAACATGAACAG
1 AAAAAAACATGAACAG
*
76135986 AAAAAAACATGGCTATCAG
1 AAAAAAACAT-G--AACAG
76136005 TAAAAAAACATGAACAG
1 -AAAAAAACATGAACAG
76136022 AAAAAAACATG
1 AAAAAAACATG
76136033 GCTATCAGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
16 21 0.51
17 5 0.12
19 5 0.12
20 10 0.24
ACGTcount: A:0.63, C:0.13, G:0.13, T:0.11
Consensus pattern (16 bp):
AAAAAAACATGAACAG
Found at i:76136005 original size:36 final size:36
Alignment explanation
Indices: 76135965--76136050 Score: 172
Period size: 36 Copynumber: 2.4 Consensus size: 36
76135955 ACAATGGTTT
76135965 TCAGTAAAAAAACATGAACAGAAAAAAACATGGCTA
1 TCAGTAAAAAAACATGAACAGAAAAAAACATGGCTA
76136001 TCAGTAAAAAAACATGAACAGAAAAAAACATGGCTA
1 TCAGTAAAAAAACATGAACAGAAAAAAACATGGCTA
76136037 TCAGTAAAAAAACA
1 TCAGTAAAAAAACA
76136051 ATAAAGAATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.59, C:0.14, G:0.13, T:0.14
Consensus pattern (36 bp):
TCAGTAAAAAAACATGAACAGAAAAAAACATGGCTA
Found at i:76153637 original size:12 final size:12
Alignment explanation
Indices: 76153620--76153644 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76153610 GGTGTTCATT
76153620 CGGTTAACCGAC
1 CGGTTAACCGAC
76153632 CGGTTAACCGAC
1 CGGTTAACCGAC
76153644 C
1 C
76153645 CGAAATTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:76153817 original size:9 final size:9
Alignment explanation
Indices: 76153803--76153854 Score: 104
Period size: 9 Copynumber: 5.8 Consensus size: 9
76153793 TTTGGTTAAA
76153803 AATTACCCG
1 AATTACCCG
76153812 AATTACCCG
1 AATTACCCG
76153821 AATTACCCG
1 AATTACCCG
76153830 AATTACCCG
1 AATTACCCG
76153839 AATTACCCG
1 AATTACCCG
76153848 AATTACC
1 AATTACC
76153855 GAAAAATACC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.35, C:0.33, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:76162705 original size:22 final size:22
Alignment explanation
Indices: 76162680--76162723 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
76162670 TAACGAAGGT
*
76162680 GATATTGGGATACCTAGAGTAG
1 GATATTGCGATACCTAGAGTAG
* *
76162702 GATATTGCGATATCTCGAGTAG
1 GATATTGCGATACCTAGAGTAG
76162724 TGTTGAAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (22 bp):
GATATTGCGATACCTAGAGTAG
Found at i:76164365 original size:25 final size:25
Alignment explanation
Indices: 76164331--76164414 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
76164321 TATACATTAA
76164331 ATATATATTTTATTTTTAATCAAAT
1 ATATATATTTTATTTTTAATCAAAT
76164356 ATATATATTTTATTTTTAATCAAAT
1 ATATATATTTTATTTTTAATCAAAT
* * * *
76164381 ATATATATTTTGTATAT-ATTAAAT
1 ATATATATTTTATTTTTAATCAAAT
76164405 ATATATATTT
1 ATATATATTT
76164415 AATATGGGTC
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
24 16 0.29
25 39 0.71
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.56
Consensus pattern (25 bp):
ATATATATTTTATTTTTAATCAAAT
Found at i:76165231 original size:13 final size:15
Alignment explanation
Indices: 76165201--76165249 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 15
76165191 AGCTCATTGC
76165201 ACATAAGAAAAACAA
1 ACATAAGAAAAACAA
76165216 ACAT-AGAAAAAC-A
1 ACATAAGAAAAACAA
76165229 ACA-AA-AACAAACCAA
1 ACATAAGAA-AAA-CAA
76165244 ACATAA
1 ACATAA
76165250 AATAATAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
12 2 0.07
13 8 0.28
14 9 0.31
15 8 0.28
16 2 0.07
ACGTcount: A:0.71, C:0.18, G:0.04, T:0.06
Consensus pattern (15 bp):
ACATAAGAAAAACAA
Found at i:76168875 original size:17 final size:17
Alignment explanation
Indices: 76168853--76168885 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76168843 TGACATGGAA
76168853 GGTCACTACTATAGGTG
1 GGTCACTACTATAGGTG
76168870 GGTCACTACTATAGGT
1 GGTCACTACTATAGGT
76168886 AGATTTTCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.30
Consensus pattern (17 bp):
GGTCACTACTATAGGTG
Found at i:76174650 original size:13 final size:13
Alignment explanation
Indices: 76174634--76174665 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
76174624 TTCTCCTTTT
76174634 GTTTTCCTTTCCC
1 GTTTTCCTTTCCC
76174647 GTTTTCCTTTCCC
1 GTTTTCCTTTCCC
76174660 GTTTTC
1 GTTTTC
76174666 AAGTGAGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.34, G:0.09, T:0.56
Consensus pattern (13 bp):
GTTTTCCTTTCCC
Found at i:76176178 original size:27 final size:27
Alignment explanation
Indices: 76176148--76176202 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
76176138 AATATAATAT
*
76176148 AATTATTAA-ATTATTAAATTTTACTTA
1 AATTATTAACA-TATTAAATTTTAATTA
*
76176175 AATTATTAACATATTGAATTTTAATTA
1 AATTATTAACATATTAAATTTTAATTA
76176202 A
1 A
76176203 TTTTCATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (27 bp):
AATTATTAACATATTAAATTTTAATTA
Found at i:76176227 original size:21 final size:20
Alignment explanation
Indices: 76176191--76176236 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
76176181 TAACATATTG
*
76176191 AATTTTAATTAATTTTCATA
1 AATTTTAATTAATTTTCACA
* *
76176211 AATTTTGAATTATTTTTGACA
1 AATTTT-AATTAATTTTCACA
76176232 AATTT
1 AATTT
76176237 GCACAAATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (20 bp):
AATTTTAATTAATTTTCACA
Found at i:76179093 original size:21 final size:21
Alignment explanation
Indices: 76179069--76179123 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
76179059 GACGACTGCA
*
76179069 GTGTCGCAACACTGAGAAGTG
1 GTGTCGCAACACCGAGAAGTG
76179090 GTGTCGCAACACCGAGAAGTG
1 GTGTCGCAACACCGAGAAGTG
*
76179111 GTATCGCAACACC
1 GTGTCGCAACACC
76179124 AGACTTCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.29, C:0.25, G:0.29, T:0.16
Consensus pattern (21 bp):
GTGTCGCAACACCGAGAAGTG
Found at i:76187765 original size:23 final size:23
Alignment explanation
Indices: 76187739--76187784 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
76187729 TTATAGAGGG
76187739 TTATGGTATTTTGTTCGATTCCA
1 TTATGGTATTTTGTTCGATTCCA
76187762 TTATGGTATTTTGTTCGATTCCA
1 TTATGGTATTTTGTTCGATTCCA
76187785 ATTTCTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.52
Consensus pattern (23 bp):
TTATGGTATTTTGTTCGATTCCA
Found at i:76188528 original size:15 final size:15
Alignment explanation
Indices: 76188508--76188538 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
76188498 GATGAAGAAT
76188508 ATTATTACGATGATG
1 ATTATTACGATGATG
*
76188523 ATTATTATGATGATG
1 ATTATTACGATGATG
76188538 A
1 A
76188539 AGACGACGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.03, G:0.19, T:0.42
Consensus pattern (15 bp):
ATTATTACGATGATG
Found at i:76188537 original size:18 final size:18
Alignment explanation
Indices: 76188493--76188541 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
76188483 GGTGATGACG
76188493 ATGATGATGAAGAATATT
1 ATGATGATGAAGAATATT
* * * *
76188511 ATTACGATGATGATTATT
1 ATGATGATGAAGAATATT
76188529 ATGATGATGAAGA
1 ATGATGATGAAGA
76188542 CGACGACGAC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.35
Consensus pattern (18 bp):
ATGATGATGAAGAATATT
Found at i:76188604 original size:18 final size:18
Alignment explanation
Indices: 76188583--76188617 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
76188573 GAATATAATG
*
76188583 ATGAGAAAGATCAGAAAA
1 ATGAGAAAGAACAGAAAA
76188601 ATGAGAAAGAACAGAAA
1 ATGAGAAAGAACAGAAA
76188618 TAAAATTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.06, G:0.23, T:0.09
Consensus pattern (18 bp):
ATGAGAAAGAACAGAAAA
Found at i:76189456 original size:16 final size:16
Alignment explanation
Indices: 76189435--76189466 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
76189425 GATTGTAAGA
76189435 GTAAAAAAGTTGCCAC
1 GTAAAAAAGTTGCCAC
76189451 GTAAAAAAGTTGCCAC
1 GTAAAAAAGTTGCCAC
76189467 TAAGGTGCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (16 bp):
GTAAAAAAGTTGCCAC
Found at i:76189652 original size:97 final size:97
Alignment explanation
Indices: 76189486--76189677 Score: 384
Period size: 97 Copynumber: 2.0 Consensus size: 97
76189476 GCACCAATCA
76189486 GTGTGTTTGGCAACGTAGTAGTGAACATTTCTCACCTCACTATAATCCAAAATTTTGGTTGGAGT
1 GTGTGTTTGGCAACGTAGTAGTGAACATTTCTCACCTCACTATAATCCAAAATTTTGGTTGGAGT
76189551 TTAGAGTTCGAATTGACTGCTTTGAAAGTCTG
66 TTAGAGTTCGAATTGACTGCTTTGAAAGTCTG
76189583 GTGTGTTTGGCAACGTAGTAGTGAACATTTCTCACCTCACTATAATCCAAAATTTTGGTTGGAGT
1 GTGTGTTTGGCAACGTAGTAGTGAACATTTCTCACCTCACTATAATCCAAAATTTTGGTTGGAGT
76189648 TTAGAGTTCGAATTGACTGCTTTGAAAGTC
66 TTAGAGTTCGAATTGACTGCTTTGAAAGTC
76189678 CAAAAACAGG
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
97 95 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (97 bp):
GTGTGTTTGGCAACGTAGTAGTGAACATTTCTCACCTCACTATAATCCAAAATTTTGGTTGGAGT
TTAGAGTTCGAATTGACTGCTTTGAAAGTCTG
Found at i:76189789 original size:16 final size:16
Alignment explanation
Indices: 76189751--76189792 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
76189741 ACACACAACG
76189751 TAATTTTAATATATCA
1 TAATTTTAATATATCA
*
76189767 TTA-TTTAATATAAT-A
1 TAATTTTAATAT-ATCA
76189782 TAATTTTAATA
1 TAATTTTAATA
76189793 AAAATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATTTTAATATATCA
Found at i:76191786 original size:16 final size:18
Alignment explanation
Indices: 76191765--76191798 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
76191755 GAAAAATATT
76191765 AAATAT-ATA-TTTTTTA
1 AAATATAATAGTTTTTTA
76191781 AAATATAATAGTTTTTTA
1 AAATATAATAGTTTTTTA
76191799 TTTTAAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 3 0.19
18 7 0.44
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
AAATATAATAGTTTTTTA
Found at i:76191944 original size:59 final size:59
Alignment explanation
Indices: 76191875--76192053 Score: 232
Period size: 68 Copynumber: 2.9 Consensus size: 59
76191865 TCAAGTTTAT
* *
76191875 TTTACTAATCAAATGTTATATTTTGTTACAACAATTAATACAATTAATAATTTGATAAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
* *
76191934 TTTACTAATCAAATGTTAGATTTTATTATAAAAATTAATACAATTAACACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTA-T-T----A--CA-ACAATTAATACAATTAATAATTTGAT
76191999 AAA
57 AAA
*
76192002 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATT
76192054 AATAATTTGA
Statistics
Matches: 104, Mismatches: 7, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
59 43 0.41
60 2 0.02
61 1 0.01
62 1 0.01
65 1 0.01
66 1 0.01
67 2 0.02
68 53 0.51
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (59 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
Found at i:76191986 original size:68 final size:67
Alignment explanation
Indices: 76191905--76192075 Score: 290
Period size: 68 Copynumber: 2.5 Consensus size: 67
76191895 TTTTGTTACA
*
76191905 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTATAAAAATT
1 ACAATTAA-ACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAAAAATT
76191970 AAT
65 AAT
*
76191973 ACAATTAACACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAA-ACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAAAAATT
76192038 AAT
65 AAT
*
76192041 ACAATT-AACAATTAATAATTTGATAATTTTACTAA
1 ACAATTAAACAATTAATAATTTGATAAATTTACTAA
76192076 CAATTAATTT
Statistics
Matches: 99, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
66 27 0.27
67 1 0.01
68 71 0.72
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (67 bp):
ACAATTAAACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAAAAATTA
AT
Found at i:76192085 original size:16 final size:16
Alignment explanation
Indices: 76192064--76192105 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
76192054 AATAATTTGA
*
76192064 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
76192080 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
76192096 TAGTTTTAAT
1 TAATTTTAAT
76192106 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:76192094 original size:59 final size:66
Alignment explanation
Indices: 76191905--76192097 Score: 265
Period size: 68 Copynumber: 3.0 Consensus size: 66
76191895 TTTTGTTACA
* *
76191905 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTATAAAAATT
1 ACAATTAACACAATTAATAATTTGATAAATTTACTAATCAAA-GTTAGATTTTA-TATAACAATT
76191970 AAT
64 AAT
*
76191973 ACAATTAACACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAACACAATTAATAATTTGATAAATTTACTAATCAAA-GTTAGATTTTA-TATAACAATT
76192038 AAT
64 AAT
*
76192041 ACAATT-A-ACAATTAATAATTTGATAATTTTACTAA-C-AA-TTA-ATTTTA-ATAACAATTA
1 ACAATTAACACAATTAATAATTTGATAAATTTACTAATCAAAGTTAGATTTTATATAACAATTA
76192098 GTTTTAATTT
Statistics
Matches: 120, Mismatches: 5, Indels: 9
0.90 0.04 0.07
Matches are distributed among these distances:
59 9 0.08
61 6 0.05
62 3 0.03
64 2 0.02
65 1 0.01
66 27 0.22
67 1 0.01
68 71 0.59
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (66 bp):
ACAATTAACACAATTAATAATTTGATAAATTTACTAATCAAAGTTAGATTTTATATAACAATTAA
T
Found at i:76192122 original size:31 final size:31
Alignment explanation
Indices: 76192087--76192147 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
76192077 AATTAATTTT
*
76192087 AATAACAATTAGTTTTAATTTT-ATTAAAAAA
1 AATAA-AATTAATTTTAATTTTAATTAAAAAA
**
76192118 AATAATTTTAATTTTAATTTTAATTAAAAA
1 AATAAAATTAATTTTAATTTTAATTAAAAA
76192148 CGGGTCGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 13 0.50
31 13 0.50
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (31 bp):
AATAAAATTAATTTTAATTTTAATTAAAAAA
Found at i:76192349 original size:21 final size:21
Alignment explanation
Indices: 76192315--76192354 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
76192305 CTTGAACAAC
*
76192315 TTTTAGATTATTTGTTTTACT
1 TTTTAGATTATTTGATTTACT
76192336 TTTTA-ATTATTTTGATTTA
1 TTTTAGATTA-TTTGATTTA
76192355 AAAAATGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.68
Consensus pattern (21 bp):
TTTTAGATTATTTGATTTACT
Found at i:76192461 original size:11 final size:11
Alignment explanation
Indices: 76192426--76192464 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
76192416 GTAAATCATC
76192426 TAATAAATATAT
1 TAAT-AATATAT
76192438 TAGATAATATAT
1 TA-ATAATATAT
*
76192450 TAATAATTTAT
1 TAATAATATAT
76192461 TAAT
1 TAAT
76192465 TTATATTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 12 0.48
12 11 0.44
13 2 0.08
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TAATAATATAT
Found at i:76197524 original size:30 final size:30
Alignment explanation
Indices: 76197490--76197547 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
76197480 CACAGGCTGG
*
76197490 CACATGGGCGTGTGGCCAGCCCGTGTGGCT
1 CACATGGGCATGTGGCCAGCCCGTGTGGCT
*
76197520 CACATGGGCATGTGGCCAGCCTGTGTGG
1 CACATGGGCATGTGGCCAGCCCGTGTGG
76197548 AAGTGCCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.28, G:0.40, T:0.21
Consensus pattern (30 bp):
CACATGGGCATGTGGCCAGCCCGTGTGGCT
Found at i:76198107 original size:72 final size:71
Alignment explanation
Indices: 76197869--76198205 Score: 399
Period size: 72 Copynumber: 4.7 Consensus size: 71
76197859 TCACCTGTGA
** * * **
76197869 ATAAATTTTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTAGTATAAATAA
1 ATAAATTCAATATCCAAAAACCAAATATAAACAACTATTGATAAAACTAGA-TTAACATAAATAA
76197932 GTAGAAC
65 GTAGAAC
* * * * **
76197939 ATAAATTTAACATCCAAAAATCAAATATAAACAATTATTGATAAAACTAGCCCTAAGCATAAATA
1 ATAAATTCAATATCCAAAAACCAAATATAAACAACTATTGATAAAACTAG-ATTAA-CATAAATA
* *
76198004 ATTAGACC
64 AGTAGAAC
* *
76198012 ATAAATTCAATATCCAAAGACCAAATATAAACAAATATTGATAAAACTAGATTACACATAAATAA
1 ATAAATTCAATATCCAAAAACCAAATATAAACAACTATTGATAAAACTAGATTA-ACATAAATAA
*
76198077 GCAGAAC
65 GTAGAAC
* * * *
76198084 ATAAATTCAATATCCAAAAACCAAACATAAATAACCATTGATAAAACTAGATTACACAAAAATAA
1 ATAAATTCAATATCCAAAAACCAAATATAAACAACTATTGATAAAACTAGATTA-ACATAAATAA
*
76198149 GTAGCAC
65 GTAGAAC
* *
76198156 ATAAATTCAATATCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 ATAAATTCAATATCCAAAAACCAAATATAAACAACTATTGATAAAACTAG
76198206 TTTAGCATTG
Statistics
Matches: 233, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
70 13 0.06
71 31 0.13
72 130 0.56
73 59 0.25
ACGTcount: A:0.54, C:0.15, G:0.06, T:0.25
Consensus pattern (71 bp):
ATAAATTCAATATCCAAAAACCAAATATAAACAACTATTGATAAAACTAGATTAACATAAATAAG
TAGAAC
Found at i:76199493 original size:20 final size:20
Alignment explanation
Indices: 76199468--76199506 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
76199458 TACTTTCTTC
76199468 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
76199488 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
76199507 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Done.