Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 247 of 313
Found at i:76204462 original size:40 final size:40
Alignment explanation
Indices: 76204409--76204497 Score: 144
Period size: 40 Copynumber: 2.2 Consensus size: 40
76204399 ATCTCATGCA
* *
76204409 AACA-TAGGAATGGGTCGATCCTGGATCAATTAAAGCAAT
1 AACACTAGTAATGGGTCGATCCTAGATCAATTAAAGCAAT
*
76204448 AACTCTAGTAATGGGTCGATCCTAGATCAATTAAAGCAAT
1 AACACTAGTAATGGGTCGATCCTAGATCAATTAAAGCAAT
76204488 AACACTAGTA
1 AACACTAGTA
76204498 TCATAAAGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
39 3 0.07
40 42 0.93
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (40 bp):
AACACTAGTAATGGGTCGATCCTAGATCAATTAAAGCAAT
Found at i:76205264 original size:22 final size:22
Alignment explanation
Indices: 76205193--76205257 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
76205183 AACAAGGAGA
* * *
76205193 CTCTTCAGTGGTATCGCGAAATC
1 CTCTTCTG-GGTATCGTGATATC
76205216 CTCTT-TGGGTATCGTGATATC
1 CTCTTCTGGGTATCGTGATATC
*
76205237 CTCTTCTGGGTATTGTGATAT
1 CTCTTCTGGGTATCGTGATAT
76205258 AGCCTTCGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
21 17 0.46
22 15 0.41
23 5 0.14
ACGTcount: A:0.17, C:0.20, G:0.23, T:0.40
Consensus pattern (22 bp):
CTCTTCTGGGTATCGTGATATC
Found at i:76207809 original size:62 final size:62
Alignment explanation
Indices: 76207739--76207861 Score: 228
Period size: 62 Copynumber: 2.0 Consensus size: 62
76207729 TGAATAATAG
*
76207739 AAGTATTAAATGGATTGAAATTTTCTATTCAGATTAAGATAAACCACGTACGAATTCAGATT
1 AAGTATTAAATGGATTGAAATTGTCTATTCAGATTAAGATAAACCACGTACGAATTCAGATT
*
76207801 AAGTATTAAATGGATTGAAATTGTCTATTCAGATTAAGATAAACCACGTACGAATTTAGAT
1 AAGTATTAAATGGATTGAAATTGTCTATTCAGATTAAGATAAACCACGTACGAATTCAGAT
76207862 CGGGGAAAAG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (62 bp):
AAGTATTAAATGGATTGAAATTGTCTATTCAGATTAAGATAAACCACGTACGAATTCAGATT
Found at i:76208943 original size:37 final size:37
Alignment explanation
Indices: 76208896--76208982 Score: 147
Period size: 37 Copynumber: 2.4 Consensus size: 37
76208886 ATGGCTTATG
*
76208896 TGGTATGTTTTGAGGTGGTTTGAATATGGTAAAGTTA
1 TGGTATGTTTTGAGGTAGTTTGAATATGGTAAAGTTA
76208933 TGGTATGTTTTGAGGTAGTTTGAATATGGTAAAGTTA
1 TGGTATGTTTTGAGGTAGTTTGAATATGGTAAAGTTA
* *
76208970 TAGCATGTTTTGA
1 TGGTATGTTTTGA
76208983 AAGGCATTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (37 bp):
TGGTATGTTTTGAGGTAGTTTGAATATGGTAAAGTTA
Found at i:76210522 original size:12 final size:12
Alignment explanation
Indices: 76210490--76210524 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
76210480 ATGAATAGTG
76210490 ATAAAAATAATA
1 ATAAAAATAATA
**
76210502 ATAGCAATAATA
1 ATAAAAATAATA
76210514 ATAAAAATAAT
1 ATAAAAATAAT
76210525 TAAATGATTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (12 bp):
ATAAAAATAATA
Found at i:76211699 original size:25 final size:24
Alignment explanation
Indices: 76211655--76211701 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
76211645 CTGTTATTAA
*
76211655 TATTTTGTTTGGTTTATATATTTT
1 TATTTTGTTTGATTTATATATTTT
*
76211679 TATTTTGATTTGATTTTTATATT
1 TATTTTG-TTTGATTTATATATT
76211702 ATGGGCCGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.19, C:0.00, G:0.11, T:0.70
Consensus pattern (24 bp):
TATTTTGTTTGATTTATATATTTT
Found at i:76212349 original size:14 final size:14
Alignment explanation
Indices: 76212332--76212380 Score: 66
Period size: 14 Copynumber: 3.5 Consensus size: 14
76212322 TGATTGTTTT
76212332 ATAATGTGTTTATG
1 ATAATGTGTTTATG
76212346 ATAATGATTGTTT-T-
1 ATAATG--TGTTTATG
76212360 ATAATGTGTTTATG
1 ATAATGTGTTTATG
76212374 ATAATGT
1 ATAATGT
76212381 ACGAAATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 5 0.16
13 1 0.03
14 19 0.61
15 1 0.03
16 5 0.16
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (14 bp):
ATAATGTGTTTATG
Found at i:76212351 original size:28 final size:28
Alignment explanation
Indices: 76212320--76212379 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
76212310 TATGTATGTG
76212320 AATGATTGTTTTATAATGTGTTTATGAT
1 AATGATTGTTTTATAATGTGTTTATGAT
76212348 AATGATTGTTTTATAATGTGTTTATGAT
1 AATGATTGTTTTATAATGTGTTTATGAT
76212376 AATG
1 AATG
76212380 TACGAAATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.18, T:0.52
Consensus pattern (28 bp):
AATGATTGTTTTATAATGTGTTTATGAT
Found at i:76214894 original size:41 final size:41
Alignment explanation
Indices: 76214837--76214917 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
76214827 GGAGGGTCTC
76214837 TCGTAGGCTTGAGTTCTTTCAATTTGGTGGAAGTGTTTTTT
1 TCGTAGGCTTGAGTTCTTTCAATTTGGTGGAAGTGTTTTTT
76214878 TCGTAGGCTTGAGTTCTTTCAATTTGGTGGAAGTGTTTTT
1 TCGTAGGCTTGAGTTCTTTCAATTTGGTGGAAGTGTTTTT
76214918 AACACTGAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.15, C:0.10, G:0.27, T:0.48
Consensus pattern (41 bp):
TCGTAGGCTTGAGTTCTTTCAATTTGGTGGAAGTGTTTTTT
Found at i:76217436 original size:42 final size:42
Alignment explanation
Indices: 76217371--76217526 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
76217361 AAATCGTACA
*
76217371 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
76217413 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
76217455 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
76217499 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
76217527 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:76224770 original size:42 final size:42
Alignment explanation
Indices: 76224705--76224860 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
76224695 AAATCGTACA
*
76224705 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
76224747 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
76224789 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
76224833 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
76224861 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:76226665 original size:5 final size:5
Alignment explanation
Indices: 76226655--76226679 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76226645 AAGTCTCATA
76226655 TATGT TATGT TATGT TATGT TATGT
1 TATGT TATGT TATGT TATGT TATGT
76226680 GCACACCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
TATGT
Found at i:76240652 original size:56 final size:55
Alignment explanation
Indices: 76240553--76240706 Score: 209
Period size: 56 Copynumber: 2.7 Consensus size: 55
76240543 TTCTGTTGAT
* *
76240553 ATATTATTATGAGGTATTATCTTTTTAGCAATTTGATTCCTAATGGGATATTATAAG
1 ATATTATTATGAGATATTA--TATTTAGCAATTTGATTCCTAATGGGATATTATAAG
* *
76240610 ATATTATTATGAGATATTATATCTTAGCAGTTTGATTCCTAATGGGATGTTATAAG
1 ATATTATTATGAGATATTATAT-TTAGCAATTTGATTCCTAATGGGATATTATAAG
* * *
76240666 ATATTATTATGGGATTTTATGTTTCAGCAATTTGATTCCTA
1 ATATTATTATGAGATATTATATTT-AGCAATTTGATTCCTA
76240707 TGTAACTACT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
55 4 0.05
56 65 0.75
57 18 0.21
ACGTcount: A:0.31, C:0.08, G:0.16, T:0.45
Consensus pattern (55 bp):
ATATTATTATGAGATATTATATTTAGCAATTTGATTCCTAATGGGATATTATAAG
Found at i:76245230 original size:5 final size:5
Alignment explanation
Indices: 76245220--76245255 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
76245210 AGAAATAAAC
76245220 ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA A
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA A
76245256 AAGAAAACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATTAA
Found at i:76247056 original size:52 final size:53
Alignment explanation
Indices: 76246992--76247112 Score: 135
Period size: 52 Copynumber: 2.3 Consensus size: 53
76246982 ATAACTAGAA
* *
76246992 AAAT-AAAATAAAATAACTAAGAATAGAA-AATAATAG-ATAATAA-ACAATAAAT
1 AAATGAAAATAAAATAACTAA-AA-AGAATAATAATAGAAAAATAACA-AAAAAAT
* *
76247044 AAA-GAAAATAAAAGAACTAATAAGAATAATAATAGAAAAATAACAAAAAAAT
1 AAATGAAAATAAAATAACTAAAAAGAATAATAATAGAAAAATAACAAAAAAAT
76247096 AAATGATAAATAAAATA
1 AAATGA-AAATAAAATA
76247113 GGGCAAATAG
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
50 4 0.07
51 9 0.16
52 33 0.57
53 3 0.05
54 9 0.16
ACGTcount: A:0.71, C:0.03, G:0.07, T:0.19
Consensus pattern (53 bp):
AAATGAAAATAAAATAACTAAAAAGAATAATAATAGAAAAATAACAAAAAAAT
Found at i:76247075 original size:30 final size:31
Alignment explanation
Indices: 76247013--76247082 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
76247003 AATAACTAAG
*
76247013 AATAGAAAATAATAGATAATAAACAATAAAT
1 AATAGAAAATAAAAGATAATAAACAATAAAT
*
76247044 AA-AGAAAATAAAAGAACTAAT-AAGAAT-AAT
1 AATAGAAAATAAAAG-A-TAATAAACAATAAAT
76247074 AATAGAAAA
1 AATAGAAAA
76247083 ATAACAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
30 16 0.47
31 14 0.41
32 4 0.12
ACGTcount: A:0.70, C:0.03, G:0.09, T:0.19
Consensus pattern (31 bp):
AATAGAAAATAAAAGATAATAAACAATAAAT
Found at i:76249268 original size:40 final size:39
Alignment explanation
Indices: 76249224--76249467 Score: 247
Period size: 40 Copynumber: 6.1 Consensus size: 39
76249214 TTGCATATCA
76249224 GTGCCTCTGTTTGTACTTCGGTACCCCTGAATGCACATTT
1 GTGCC-CTGTTTGTACTTCGGTACCCCTGAATGCACATTT
* *
76249264 GTGCCCTGTTTGCACTTCGGTGCCCCTGAATGCACATTT
1 GTGCCCTGTTTGTACTTCGGTACCCCTGAATGCACATTT
* ***
76249303 TTGCCCCTGTTTGTACTTCGGTACCCCTGAACAAACATTT
1 GTG-CCCTGTTTGTACTTCGGTACCCCTGAATGCACATTT
* ** * * *
76249343 ATGCCCTTTGTTTACACTTCGGTGCCCCTAAATGCACATCT
1 GTGCCC--TGTTTGTACTTCGGTACCCCTGAATGCACATTT
* * *
76249384 GTGCCCTTATTTGTACTTCGGTACCCCTAAATGCACATAT
1 GTGCCC-TGTTTGTACTTCGGTACCCCTGAATGCACATTT
* * * *
76249424 GTGCCCCTATTT-TCACTTCGGTGCCCCTGATTGCACATTC
1 GTG-CCCTGTTTGT-ACTTCGGTACCCCTGAATGCACATTT
76249464 GTGC
1 GTGC
76249468 TCTTGATTGC
Statistics
Matches: 171, Mismatches: 28, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
39 39 0.23
40 99 0.58
41 33 0.19
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.35
Consensus pattern (39 bp):
GTGCCCTGTTTGTACTTCGGTACCCCTGAATGCACATTT
Found at i:76249297 original size:20 final size:20
Alignment explanation
Indices: 76249238--76249298 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
76249228 CTCTGTTTGT
*
76249238 ACTTCGGTACCCCTGAATGC
1 ACTTCGGTGCCCCTGAATGC
* **
76249258 ACATT-TGTG-CCCTGTTTGC
1 AC-TTCGGTGCCCCTGAATGC
76249277 ACTTCGGTGCCCCTGAATGC
1 ACTTCGGTGCCCCTGAATGC
76249297 AC
1 AC
76249299 ATTTTTGCCC
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
18 2 0.06
19 13 0.42
20 14 0.45
21 2 0.06
ACGTcount: A:0.16, C:0.33, G:0.21, T:0.30
Consensus pattern (20 bp):
ACTTCGGTGCCCCTGAATGC
Found at i:76249307 original size:20 final size:20
Alignment explanation
Indices: 76249247--76249311 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
76249237 TACTTCGGTA
76249247 CCCCTGAATGCACATTTGTG
1 CCCCTGAATGCACATTTGTG
** *
76249267 -CCCTGTTTGCAC-TTCGGTG
1 CCCCTGAATGCACATT-TGTG
*
76249286 CCCCTGAATGCACATTTTTG
1 CCCCTGAATGCACATTTGTG
76249306 CCCCTG
1 CCCCTG
76249312 TTTGTACTTC
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
18 2 0.06
19 13 0.37
20 18 0.51
21 2 0.06
ACGTcount: A:0.14, C:0.34, G:0.20, T:0.32
Consensus pattern (20 bp):
CCCCTGAATGCACATTTGTG
Found at i:76249397 original size:81 final size:79
Alignment explanation
Indices: 76249204--76249461 Score: 255
Period size: 81 Copynumber: 3.2 Consensus size: 79
76249194 AAATGAAGAA
** * * * * *** *
76249204 GTGCCCCTATTTGCATATCAGTGCCTCTGTTTGTACTTCGGTACCCCTGAATGCACATTTGTGCC
1 GTGCCCCTAAATGCACATCTGTGCCCCTATTTGTACTTCGGTACCCCTGAACAAACATTTATGCC
*
76249269 CTGTTTGCACTTCG
66 CTGTTTACACTTCG
* * * *
76249283 GTGCCCCTGAATGCACATTTTTGCCCCTGTTTGTACTTCGGTACCCCTGAACAAACATTTATGCC
1 GTGCCCCTAAATGCACATCTGTGCCCCTATTTGTACTTCGGTACCCCTGAACAAACATTTATGCC
76249348 CTTTGTTTACACTTCG
66 C--TGTTTACACTTCG
* * *** * *
76249364 GTGCCCCTAAATGCACATCTGTGCCCTTATTTGTACTTCGGTACCCCTAAATGCACATATGTGCC
1 GTGCCCCTAAATGCACATCTGTGCCCCTATTTGTACTTCGGTACCCCTGAACAAACATTTATG-C
* *
76249429 CCTATTTTCACTTCG
65 CCTGTTTACACTTCG
* *
76249444 GTGCCCCTGATTGCACAT
1 GTGCCCCTAAATGCACAT
76249462 TCGTGCTCTT
Statistics
Matches: 148, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
79 54 0.36
80 27 0.18
81 64 0.43
82 3 0.02
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.35
Consensus pattern (79 bp):
GTGCCCCTAAATGCACATCTGTGCCCCTATTTGTACTTCGGTACCCCTGAACAAACATTTATGCC
CTGTTTACACTTCG
Found at i:76249447 original size:20 final size:20
Alignment explanation
Indices: 76249357--76249451 Score: 73
Period size: 20 Copynumber: 4.8 Consensus size: 20
76249347 CCTTTGTTTA
76249357 CACTTCGGTGCCCCTAAATG
1 CACTTCGGTGCCCCTAAATG
* * * **
76249377 CACATCTGTGCCCTTATTTG
1 CACTTCGGTGCCCCTAAATG
* *
76249397 TACTTCGGTACCCCTAAATG
1 CACTTCGGTGCCCCTAAATG
* ** ** *
76249417 CACATATGTGCCCCTATTTT
1 CACTTCGGTGCCCCTAAATG
76249437 CACTTCGGTGCCCCT
1 CACTTCGGTGCCCCT
76249452 GATTGCACAT
Statistics
Matches: 52, Mismatches: 23, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.18, C:0.34, G:0.16, T:0.33
Consensus pattern (20 bp):
CACTTCGGTGCCCCTAAATG
Found at i:76249467 original size:20 final size:20
Alignment explanation
Indices: 76249415--76249482 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
76249405 TACCCCTAAA
76249415 TGCACATAT-GTGCCCCT-ATT
1 TGCACAT-TCGTGCCCCTGA-T
*
76249435 TTCAC-TTCGGTGCCCCTGAT
1 TGCACATTC-GTGCCCCTGAT
* *
76249455 TGCACATTCGTGCTCTTGAT
1 TGCACATTCGTGCCCCTGAT
76249475 TGCACATT
1 TGCACATT
76249483 GGTTCCCTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 34 0.85
21 4 0.10
ACGTcount: A:0.16, C:0.29, G:0.18, T:0.37
Consensus pattern (20 bp):
TGCACATTCGTGCCCCTGAT
Found at i:76249492 original size:20 final size:20
Alignment explanation
Indices: 76249444--76249492 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
76249434 TTTCACTTCG
*
76249444 GTGCCCCTGATTGCACATTC
1 GTGCCCTTGATTGCACATTC
* *
76249464 GTGCTCTTGATTGCACATTG
1 GTGCCCTTGATTGCACATTC
*
76249484 GTTCCCTTG
1 GTGCCCTTG
76249493 TTATGCATCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.12, C:0.29, G:0.22, T:0.37
Consensus pattern (20 bp):
GTGCCCTTGATTGCACATTC
Found at i:76249981 original size:13 final size:13
Alignment explanation
Indices: 76249965--76249990 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76249955 AACGTTTAAG
76249965 TGAAATGCTTATA
1 TGAAATGCTTATA
76249978 TGAAATGCTTATA
1 TGAAATGCTTATA
76249991 AGGAAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
TGAAATGCTTATA
Found at i:76251880 original size:16 final size:18
Alignment explanation
Indices: 76251859--76251894 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
76251849 CCTATAAGAA
76251859 TGAATG-CCAAC-AAATT
1 TGAATGACCAACAAAATT
76251875 TGAATGACCAACAAAATT
1 TGAATGACCAACAAAATT
76251893 TG
1 TG
76251895 CCAGGGGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.25
Consensus pattern (18 bp):
TGAATGACCAACAAAATT
Found at i:76260916 original size:124 final size:124
Alignment explanation
Indices: 76260696--76260940 Score: 427
Period size: 124 Copynumber: 2.0 Consensus size: 124
76260686 AGACTTTTTG
76260696 TTAGAAACTTTTCTTCCAGTGTATCCCACAACTTCTTCGCTGATGTCTCCCTCATGACAGAGTAC
1 TTAGAAACTTTTCTTCCAGTGTATCCCACAACTTCTTCGCTGATGTCTCCCTCATGACAGAGTAC
*
76260761 TTCTGCTCTTTGGCCAAACATAGGCGAATTGTTCCACATGCCTGTCTATTGATCTTGTC
66 TTCTGCTATTTGGCCAAACATAGGCGAATTGTTCCACATGCCTGTCTATTGATCTTGTC
* * * *
76260820 TTAGAAGCTTTTCTTTCAGTGTATCCTACAACTTCTTCGCTGATGTCTCCTTCATGACAGAGTAC
1 TTAGAAACTTTTCTTCCAGTGTATCCCACAACTTCTTCGCTGATGTCTCCCTCATGACAGAGTAC
* *
76260885 TTCTGCTATTTGTCTAAACATAGGCGAATTGTTCCACATGCCTGTCTATTGATCTT
66 TTCTGCTATTTGGCCAAACATAGGCGAATTGTTCCACATGCCTGTCTATTGATCTT
76260941 AGCCCACTCC
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
124 114 1.00
ACGTcount: A:0.21, C:0.25, G:0.16, T:0.38
Consensus pattern (124 bp):
TTAGAAACTTTTCTTCCAGTGTATCCCACAACTTCTTCGCTGATGTCTCCCTCATGACAGAGTAC
TTCTGCTATTTGGCCAAACATAGGCGAATTGTTCCACATGCCTGTCTATTGATCTTGTC
Found at i:76261672 original size:17 final size:17
Alignment explanation
Indices: 76261650--76261682 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76261640 TCCCAGATTT
76261650 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
76261667 TGATACCCATATCTTT
1 TGATACCCATATCTTT
76261683 AACTTTCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:76273524 original size:41 final size:40
Alignment explanation
Indices: 76273479--76273580 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 40
76273469 TGATTCAGTA
76273479 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * *
76273520 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
76273561 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
76273581 AGCGCTAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.04
41 51 0.93
42 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:76273595 original size:41 final size:41
Alignment explanation
Indices: 76273479--76273595 Score: 112
Period size: 41 Copynumber: 2.9 Consensus size: 41
76273469 TGATTCAGTA
* * * * *
76273479 CACCGGCACTTAGCCTGCTAGACA-TATAGTCTGAAATATTT
1 CACCGGCAATAAGCCTGCTAGACACTA-AGCCTGAAGTGTTT
* * * *
76273520 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
*
76273561 CACCGGCAATAAGCCTGCTA-AGCGCTAAGCCTGAA
1 CACCGGCAATAAGCCTGCTAGA-CACTAAGCCTGAA
76273596 AATCTCAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.02
41 62 0.97
42 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
Found at i:76279406 original size:29 final size:29
Alignment explanation
Indices: 76279316--76279409 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 29
76279306 ACACTAGTTG
* * * *
76279316 TCGGTGATTACAGTATCAGGTACTTTATA
1 TCGGTGATTATAGTTTCAGGTACTATGTA
* * *
76279345 ACGGTG-TTATAGTTTCAGGCACTCA-GTG
1 TCGGTGATTATAGTTTCAGGTACT-ATGTA
* *
76279373 CCGGTGATTATAGTTTTAGGTACTATGTA
1 TCGGTGATTATAGTTTCAGGTACTATGTA
76279402 TCGGTGAT
1 TCGGTGAT
76279410 GGATATCATA
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
28 21 0.42
29 29 0.58
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (29 bp):
TCGGTGATTATAGTTTCAGGTACTATGTA
Found at i:76280477 original size:29 final size:29
Alignment explanation
Indices: 76280387--76280480 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 29
76280377 ACACTAGTTG
* * * *
76280387 TCGGTGATTACAGTATCAGGTACTTTATA
1 TCGGTGATTATAGTTTCAGGTACTATGTA
* * *
76280416 ACGGTG-TTATAGTTTCAGGCACTCA-GTG
1 TCGGTGATTATAGTTTCAGGTACT-ATGTA
* *
76280444 CCGGTGATTATAGTTTTAGGTACTATGTA
1 TCGGTGATTATAGTTTCAGGTACTATGTA
76280473 TCGGTGAT
1 TCGGTGAT
76280481 GGATATCATA
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
28 21 0.42
29 29 0.58
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (29 bp):
TCGGTGATTATAGTTTCAGGTACTATGTA
Found at i:76286261 original size:21 final size:21
Alignment explanation
Indices: 76286215--76286261 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
76286205 TTTCTATATG
*
76286215 CCTCATGATTTTTTTGTACTC
1 CCTCATGATTTTTTGGTACTC
* * *
76286236 TCTCATGGTTTTTTGGTATTC
1 CCTCATGATTTTTTGGTACTC
76286257 CCTCA
1 CCTCA
76286262 AAATTTTTGG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.13, C:0.23, G:0.13, T:0.51
Consensus pattern (21 bp):
CCTCATGATTTTTTGGTACTC
Found at i:76286305 original size:16 final size:17
Alignment explanation
Indices: 76286279--76286310 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76286269 TGGTATGTCT
76286279 TCATAATTTTTTTATAC
1 TCATAATTTTTTTATAC
76286296 TCAT-ATTTTTTTATA
1 TCATAATTTTTTTATA
76286311 TTCCATCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (17 bp):
TCATAATTTTTTTATAC
Found at i:76286822 original size:20 final size:20
Alignment explanation
Indices: 76286793--76286837 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
76286783 CTCTCATGGT
*
76286793 TTTTTGGTATCCCCTCAGAA
1 TTTTTAGTATCCCCTCAGAA
* *
76286813 TTTTTAGTATGCCCTCATAA
1 TTTTTAGTATCCCCTCAGAA
76286833 TTTTT
1 TTTTT
76286838 TATATTCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (20 bp):
TTTTTAGTATCCCCTCAGAA
Found at i:76288812 original size:101 final size:102
Alignment explanation
Indices: 76288695--76288879 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
76288685 AAAGTGATGG
*
76288695 TCACGTGTGTACTACTATGTGCAGGCTACTACATGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTACTACTATGTGCAGGCTACTACATGTACCGG-ATGATAATGGTCACATGTGTAGT
76288758 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTTGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTTGA
* ** * *
76288796 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTACTACTATGTGCAGGCTACTACATGTACCGGATGATAATGGTCACATGTGTAGTA
76288861 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
76288880 TGAACCAAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 38 0.50
102 34 0.45
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTACTACTATGTGCAGGCTACTACATGTACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTTGA
Found at i:76288825 original size:51 final size:51
Alignment explanation
Indices: 76288692--76288881 Score: 240
Period size: 51 Copynumber: 3.7 Consensus size: 51
76288682 GTGAAAGTGA
* * **
76288692 TGGTCACGTGTGTACTACTATGTGCAGGCTACTACATGTACCGGA-A-TGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGT-AT
* * * *
76288742 AGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTTT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTAT
* * * * *
76288793 TGATCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGATGGTAA
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTAT
76288844 TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
76288882 AACCAAACAT
Statistics
Matches: 119, Mismatches: 19, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
50 38 0.32
51 80 0.67
52 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (51 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTAT
Found at i:76288830 original size:26 final size:26
Alignment explanation
Indices: 76288801--76288881 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
76288791 TTTGATCACG
76288801 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
76288827 TGTGTA-T-CGGATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
76288852 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
76288878 TGTG
1 TGTG
76288882 AACCAAACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 2 0.05
25 17 0.40
26 21 0.50
27 2 0.05
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:76288943 original size:45 final size:45
Alignment explanation
Indices: 76288883--76288975 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 45
76288873 TACTATGTGA
* * *
76288883 ACCAAACATCCTTGATTAGTAAGGTGGTTGCTATGTACTGATTCC
1 ACCAAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
* *
76288928 ACCAGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCAAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
76288973 ACC
1 ACC
76288976 GAGTATCTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (45 bp):
ACCAAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
Found at i:76291575 original size:51 final size:51
Alignment explanation
Indices: 76291520--76291904 Score: 524
Period size: 51 Copynumber: 7.6 Consensus size: 51
76291510 ACATGCCAAA
*
76291520 GCCATGTCCCAGACATGCTCTTACATGGGATGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
76291571 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
76291622 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
*
76291673 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGTCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
* ** * * *
76291724 GCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
* * * * ** * * *
76291774 GTCATGTCCTAGGCATGGCCTTACATGGGA-CCTCTCGTCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
* * * ** * * *
76291824 GTCATGTCCTAGACATGGTCTTACATGAGA-CCTCTCGTCTCGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
76291874 GCCATGTCCCAGACATGGTCTTACATGGGAT
1 GCCATGTCCCAGACATGGTCTTACATGGGAT
76291905 CTCTTTACCC
Statistics
Matches: 311, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
50 131 0.42
51 180 0.58
ACGTcount: A:0.19, C:0.29, G:0.24, T:0.28
Consensus pattern (51 bp):
GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCAT
Found at i:76291679 original size:25 final size:25
Alignment explanation
Indices: 76291549--76291679 Score: 58
Period size: 25 Copynumber: 5.2 Consensus size: 25
76291539 CTTACATGGG
76291549 ATGTTCTCATATCGGTGCCCATGCC
1 ATGTTCTCATATCGGTGCCCATGCC
* * * **
76291574 ATG-TCCCAGA-CATGGT-CTTACATGGG
1 ATGTTCTCATATC--GGTGC--CCATGCC
76291600 ATGTTCTCATATCGGTGCCCATGCC
1 ATGTTCTCATATCGGTGCCCATGCC
* * * **
76291625 ATG-TCCCAGA-CATGGT-CTTACATGGG
1 ATGTTCTCATATC--GGTGC--CCATGCC
76291651 ATGTTCTCATATCGGTGCCCATGCC
1 ATGTTCTCATATCGGTGCCCATGCC
76291676 ATGT
1 ATGT
76291680 CCCAGACATG
Statistics
Matches: 72, Mismatches: 20, Indels: 28
0.60 0.17 0.23
Matches are distributed among these distances:
23 2 0.03
24 12 0.17
25 24 0.33
26 20 0.28
27 12 0.17
28 2 0.03
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.31
Consensus pattern (25 bp):
ATGTTCTCATATCGGTGCCCATGCC
Found at i:76292801 original size:156 final size:156
Alignment explanation
Indices: 76292517--76292831 Score: 603
Period size: 156 Copynumber: 2.0 Consensus size: 156
76292507 ATAAAACATC
76292517 AAATAAACACTTTTTACCTATGGGTATTTTTCCAAATATAAACCCTAACATGAATTAATGGTAGA
1 AAATAAACACTTTTTACCTATGGGTATTTTTCCAAATATAAACCCTAACATGAATTAATGGTAGA
*
76292582 ATAAGCTAAACGAGCTACGAGGATCTCAAAAATGCAAATAACATTAAAAACGGGGCTAGGATGTA
66 ATAAGCGAAACGAGCTACGAGGATCTCAAAAATGCAAATAACATTAAAAACGGGGCTAGGATGTA
76292647 CTTACAATCAAGCTTGAAAGTGGCCA
131 CTTACAATCAAGCTTGAAAGTGGCCA
76292673 AAATAAACACTTTTTACCTATGGGTATTTTTCCAAATATAAACCCTAACATGAATTAATGGTAGA
1 AAATAAACACTTTTTACCTATGGGTATTTTTCCAAATATAAACCCTAACATGAATTAATGGTAGA
* *
76292738 ATAAGGGAAGCGAGCTACGAGGATCTCAAAAATGCAAATAACATTAAAAACGGGGCTAGGATGTA
66 ATAAGCGAAACGAGCTACGAGGATCTCAAAAATGCAAATAACATTAAAAACGGGGCTAGGATGTA
76292803 CTTACAATCAAGCTTGAAAGTGGCCA
131 CTTACAATCAAGCTTGAAAGTGGCCA
76292829 AAA
1 AAA
76292832 CCCTAGCTAT
Statistics
Matches: 156, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
156 156 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.25
Consensus pattern (156 bp):
AAATAAACACTTTTTACCTATGGGTATTTTTCCAAATATAAACCCTAACATGAATTAATGGTAGA
ATAAGCGAAACGAGCTACGAGGATCTCAAAAATGCAAATAACATTAAAAACGGGGCTAGGATGTA
CTTACAATCAAGCTTGAAAGTGGCCA
Found at i:76297044 original size:51 final size:51
Alignment explanation
Indices: 76296984--76297269 Score: 285
Period size: 51 Copynumber: 5.6 Consensus size: 51
76296974 GATGAACACG
* *
76296984 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATAATGGTCACA
* * * * * * * *
76297035 TGTGTAGTACTAAGTGAAAGCTACAATGTGTACCGAGAAGCT-TTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAA-ATAATGGTCACA
* * *** *
76297086 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATTTATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATAATGGTCACA
* * * *
76297137 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCT-TTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA--TAATGGTCACA
* * * *
76297188 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATA-ATGGTCACA
76297238 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
76297270 TCGAATGATA
Statistics
Matches: 191, Mismatches: 37, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
50 43 0.23
51 146 0.76
52 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATAATGGTCACA
Found at i:76297160 original size:102 final size:101
Alignment explanation
Indices: 76296980--76297261 Score: 415
Period size: 102 Copynumber: 2.8 Consensus size: 101
76296970 TATCGATGAA
* *
76296980 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCTATAAAT-ATGGTCACATGTGTAGTAC
* *
76297045 TAAGTGAAAGCTACAATGTGTACCGAGAAGCTTTGGT
65 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
*
76297082 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATTTATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCTATAAAT-ATGGTCACATGTGTAGTAC
*
76297147 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
65 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
* * * *
76297184 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAACT-TGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATC-TATAAA-TATGGTCACATGTGTAGTA
*
76297247 CTATGTGAAGGCTAC
64 CTAAGTGAAGGCTAC
76297262 TACGTGTATC
Statistics
Matches: 165, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
101 29 0.18
102 133 0.81
103 3 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCTATAAATATGGTCACATGTGTAGTACT
AAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
Found at i:76297371 original size:27 final size:27
Alignment explanation
Indices: 76297333--76297388 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
76297323 TTGTTATACC
*
76297333 GACATGTTCAATGAGATATGAGTATGT
1 GACATGCTCAATGAGATATGAGTATGT
76297360 GACATGCTCAATGAGATATGAGTATGT
1 GACATGCTCAATGAGATATGAGTATGT
76297387 GA
1 GA
76297389 TTGGAACGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (27 bp):
GACATGCTCAATGAGATATGAGTATGT
Found at i:76303116 original size:15 final size:14
Alignment explanation
Indices: 76303097--76303126 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
76303087 AATTTCTCTT
76303097 TAAAAAATTGGGAA
1 TAAAAAATTGGGAA
76303111 TAAAAAATTGGGAA
1 TAAAAAATTGGGAA
76303125 TA
1 TA
76303127 GACTTTGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (14 bp):
TAAAAAATTGGGAA
Found at i:76305330 original size:21 final size:21
Alignment explanation
Indices: 76305274--76305357 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
76305264 TGATCAGTAT
*
76305274 ACGACACAT-AAGTGCCTGTA
1 ACGACACATAAAGTGCCTGAA
** *
76305294 ACGACACACGAGGTGCCTGAA
1 ACGACACATAAAGTGCCTGAA
76305315 ACGACACATAAAGTGCCTGAGA
1 ACGACACATAAAGTGCCTGA-A
*
76305337 TGCGACACATAAAGTGCCTGA
1 -ACGACACATAAAGTGCCTGA
76305358 TCGGCAAAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.15
21 26 0.48
22 1 0.02
23 19 0.35
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (21 bp):
ACGACACATAAAGTGCCTGAA
Found at i:76305354 original size:44 final size:41
Alignment explanation
Indices: 76305274--76305357 Score: 98
Period size: 44 Copynumber: 2.0 Consensus size: 41
76305264 TGATCAGTAT
* *
76305274 ACGACACATAAGTGCCTGTAACGACACACGAGGTGCCTGAA
1 ACGACACATAAGTGCCTGTAACGACACACAAAGTGCCTGAA
*
76305315 ACGACACATAAAGTGCCTG-AGATGCGACACATAAAGTGCCTGA
1 ACGACACAT-AAGTGCCTGTA-A--CGACACACAAAGTGCCTGA
76305358 TCGGCAAAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
41 10 0.28
42 10 0.28
44 16 0.44
ACGTcount: A:0.36, C:0.25, G:0.24, T:0.15
Consensus pattern (41 bp):
ACGACACATAAGTGCCTGTAACGACACACAAAGTGCCTGAA
Found at i:76306565 original size:15 final size:16
Alignment explanation
Indices: 76306547--76306578 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
76306537 TTAATTAATA
76306547 TAATTT-ATAATATTT
1 TAATTTAATAATATTT
76306562 TAATTTAATAATATTT
1 TAATTTAATAATATTT
76306578 T
1 T
76306579 TGTAATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTAATAATATTT
Found at i:76312620 original size:42 final size:41
Alignment explanation
Indices: 76312488--76312802 Score: 269
Period size: 43 Copynumber: 7.5 Consensus size: 41
76312478 CTCGGTGGAT
* * *
76312488 TCAGCACTTAGCAACCACC-ATAAATTCAGTGACACAGGGAA
1 TCAGCACTTAGCAACC-CCTTTAAATTCAGTGATACGGGGAA
* *
76312529 TCAGCACATAGCAACCCCTTTCACAATTAAG-GATACGGTGGAA
1 TCAGCACTTAGCAACCCCTTT-A-AATTCAGTGATACGG-GGAA
* * *
76312572 TCAGCACTTAGAAACCACCTTTATATTCAGTGAAACGGGGAA
1 TCAGCACTTAGCAACC-CCTTTAAATTCAGTGATACGGGGAA
* **
76312614 TCAGCACTTAGCAACCCCTTTCACGA-TCAAAGATACGGTGGAA
1 TCAGCACTTAGCAACCCCTTT-A-AATTCAGTGATACGG-GGAA
* *
76312657 TCAGCACATAGCAACCACCTTTATATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACC-CCTTTAAATTCAGTGATACGGGGAA
** *
76312699 TCAGCACTTAGCAACCCCTTTCACAA-TCAAAGATACGGTGGGA
1 TCAGCACTTAGCAACCCCTTT-A-AATTCAGTGATACGG-GGAA
* * * * * * *
76312742 TCAGCAGTTAGCAACCACCTCTAGAGTCAATAATTCGGGGAA
1 TCAGCACTTAGCAACC-CCTTTAAATTCAGTGATACGGGGAA
*
76312784 TCAGCACTTAACAACCCCT
1 TCAGCACTTAGCAACCCCT
76312803 CGGGGAATCA
Statistics
Matches: 225, Mismatches: 33, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
40 2 0.01
41 29 0.13
42 89 0.40
43 91 0.40
44 14 0.06
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.21
Consensus pattern (41 bp):
TCAGCACTTAGCAACCCCTTTAAATTCAGTGATACGGGGAA
Found at i:76312626 original size:85 final size:85
Alignment explanation
Indices: 76312480--76312802 Score: 443
Period size: 85 Copynumber: 3.8 Consensus size: 85
76312470 ATCCGCTACT
* * * * * *
76312480 CGGTGGATTCAGCACTTAGCAACCACC-ATAAATTCAGTGACACAGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
* *
76312544 CCCTTTCACAATTAAGGATA
66 CCCTTTCACAATCAAAGATA
*
76312564 CGGTGGAATCAGCACTTAGAAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
*
76312629 CCCTTTCACGATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* *
76312649 CGGTGGAATCAGCACATAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
76312714 CCCTTTCACAATCAAAGATA
66 CCCTTTCACAATCAAAGATA
* * * * * * * *
76312734 CGGTGGGATCAGCAGTTAGCAACCACCTCTAGAGTCAAT-AATTCGGGGAATCAGCACTTAACAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAA-ACGGGGAATCAGCACTTAGCAA
76312798 CCCCT
65 CCCCT
76312803 CGGGGAATCA
Statistics
Matches: 213, Mismatches: 24, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
84 26 0.12
85 187 0.88
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAGTGAAACGGGGAATCAGCACTTAGCAAC
CCCTTTCACAATCAAAGATA
Found at i:76316655 original size:18 final size:18
Alignment explanation
Indices: 76316617--76316662 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
76316607 TTTTATTTCA
* * *
76316617 TTTATACATTTATATATT
1 TTTATAAATTTATAAAAT
76316635 TTTATAAATTTATAAAAT
1 TTTATAAATTTATAAAAT
76316653 TTTA-AAATTT
1 TTTATAAATTT
76316663 TTATTTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTATAAATTTATAAAAT
Found at i:76318010 original size:29 final size:29
Alignment explanation
Indices: 76317942--76318016 Score: 75
Period size: 28 Copynumber: 2.6 Consensus size: 29
76317932 AAATTTTTAA
76317942 ATAA-TAATTTTTAAAAAAATTCTAAAATT
1 ATAATTAA-TTTTAAAAAAATTCTAAAATT
* * *
76317971 AT-CTTAGTTTTAAAAAAA-TCTGAAATTT
1 ATAATTAATTTTAAAAAAATTCT-AAAATT
*
76317999 ATAATTAATTTTTAAAAA
1 ATAATTAATTTTAAAAAA
76318017 TTATAGATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
27 3 0.08
28 18 0.49
29 16 0.43
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (29 bp):
ATAATTAATTTTAAAAAAATTCTAAAATT
Found at i:76318742 original size:6 final size:6
Alignment explanation
Indices: 76318731--76318756 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
76318721 CACTAAATAC
76318731 AATTTT AATTTT AATTTT AATTTT AA
1 AATTTT AATTTT AATTTT AATTTT AA
76318757 ATATTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (6 bp):
AATTTT
Found at i:76320997 original size:27 final size:27
Alignment explanation
Indices: 76320967--76321203 Score: 203
Period size: 27 Copynumber: 8.8 Consensus size: 27
76320957 AAAATTATTG
76320967 AAATACCCTCAAAGGGTAAAATTACCA
1 AAATACCCTCAAAGGGTAAAATTACCA
* ** *
76320994 AAATATCCTTGAAGGGTAAAATTACCG
1 AAATACCCTCAAAGGGTAAAATTACCA
* *
76321021 AAATACCCTCGAAGGGTAAAATTACTA
1 AAATACCCTCAAAGGGTAAAATTACCA
* * *
76321048 AAATACCCTTGAAA-GGAAAAATTACTA
1 AAATACCC-TCAAAGGGTAAAATTACCA
* **
76321075 AAATACCCTTAAAGGGTAAAATTACTG
1 AAATACCCTCAAAGGGTAAAATTACCA
* * * *
76321102 AAACACCTTCGAAGGGTAAAATTA-TA
1 AAATACCCTCAAAGGGTAAAATTACCA
* *
76321128 GAAATACCCTCAAAGGGT-AAATTATCG
1 -AAATACCCTCAAAGGGTAAAATTACCA
* * * * *
76321155 AAGTACCCCCAAAGGATAAAATTATCG
1 AAATACCCTCAAAGGGTAAAATTACCA
*
76321182 AAATACCC-CTAAAAGGTAAAAT
1 AAATACCCTC-AAAGGGTAAAAT
76321204 GACTGTTATA
Statistics
Matches: 174, Mismatches: 30, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
26 26 0.15
27 145 0.83
28 3 0.02
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.22
Consensus pattern (27 bp):
AAATACCCTCAAAGGGTAAAATTACCA
Found at i:76321024 original size:54 final size:53
Alignment explanation
Indices: 76320954--76321148 Score: 257
Period size: 54 Copynumber: 3.6 Consensus size: 53
76320944 TGCGATTCGT
* *
76320954 GGTAAAATTATTGAAATACCCTCAAAGGGTAAAATTACCAAAATATCCTTGAAG
1 GGTAAAATTACTGAAATACCCTCAAAGGGTAAAATTACTAAAATA-CCTTGAAG
* * *
76321008 GGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTACTAAAATACCCTTGAAA
1 GGTAAAATTACTGAAATACCCTCAAAGGGTAAAATTACTAAAATA-CCTTGAAG
* * * * *
76321062 GGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTACTGAAACACCTTCGAAG
1 GGTAAAATTACTGAAATACCCTCAAAGGGTAAAATTACTAAAATACCTT-GAAG
76321116 GGTAAAATTA-TAGAAATACCCTCAAAGGGTAAA
1 GGTAAAATTACT-GAAATACCCTCAAAGGGTAAA
76321149 TTATCGAAGT
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 5 0.04
54 117 0.96
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (53 bp):
GGTAAAATTACTGAAATACCCTCAAAGGGTAAAATTACTAAAATACCTTGAAG
Found at i:76321090 original size:81 final size:79
Alignment explanation
Indices: 76320954--76321189 Score: 258
Period size: 81 Copynumber: 2.9 Consensus size: 79
76320944 TGCGATTCGT
* * * * *
76320954 GGTAAAATTATTGAAATACCCTCAAAGGGTAAAATTACCAAAATATCCTTGAAGGGTAAAATTAC
1 GGTAAAATTA-TAAAATACCCTCAAA-GGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTAC
76321019 CGAAATACCCTCGAAG
64 CGAAATACCCTCGAAG
*
76321035 GGTAAAATTACTAAAATACCCTTGAAAGGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTAC
1 GGTAAAATTA-TAAAATACCC-TCAAAGGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTAC
* * *
76321100 TGAAACACCTTCGAAG
64 CGAAATACCCTCGAAG
** * * ** * *
76321116 GGTAAAATTATAGAAATACCCTCAAAGGGTAAATTA-TCGAAGTACCCCCAAAGGATAAAATTAT
1 GGTAAAATTATA-AAATACCCTCAAAGGAAAAATTACT-AAAATACCCTTAAAGGGTAAAATTAC
76321180 CGAAATACCC
64 CGAAATACCC
76321190 CTAAAAGGTA
Statistics
Matches: 130, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
79 1 0.01
80 41 0.32
81 84 0.65
82 4 0.03
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.23
Consensus pattern (79 bp):
GGTAAAATTATAAAATACCCTCAAAGGAAAAATTACTAAAATACCCTTAAAGGGTAAAATTACCG
AAATACCCTCGAAG
Found at i:76321410 original size:26 final size:26
Alignment explanation
Indices: 76321381--76321457 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
76321371 TTGCCACATA
* * *
76321381 TACTGTTACTGGCAGCCTTGCTGTGT
1 TACTATTACTGGCAGCTTTGCTGCGT
76321407 TACTATTACTGGCAGCTTTGCTGCGT
1 TACTATTACTGGCAGCTTTGCTGCGT
* *
76321433 CATTATTACTGGCAGCTTTGCTGCG
1 TACTATTACTGGCAGCTTTGCTGCG
76321458 ATATTGGTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.14, C:0.23, G:0.25, T:0.38
Consensus pattern (26 bp):
TACTATTACTGGCAGCTTTGCTGCGT
Found at i:76322128 original size:20 final size:20
Alignment explanation
Indices: 76322103--76322145 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
76322093 TTCCAAAATT
* * *
76322103 AAGAAACGAGTTTTATCAAC
1 AAGAAACAAGTTTCACCAAC
76322123 AAGAAACAAGTTTCACCAAC
1 AAGAAACAAGTTTCACCAAC
76322143 AAG
1 AAG
76322146 TCTAAGTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.19
Consensus pattern (20 bp):
AAGAAACAAGTTTCACCAAC
Found at i:76343716 original size:28 final size:27
Alignment explanation
Indices: 76343680--76343839 Score: 142
Period size: 28 Copynumber: 5.8 Consensus size: 27
76343670 GTTCTTATGA
*
76343680 ACTCTTGCTTGAAGAATAGTCCTTGCGG
1 ACTCTTGCTTGAA-AATAGTCCTTACGG
* * * *
76343708 ACTCCTGCTTGAAGAATAATCATTACGA
1 ACTCTTGCTTGAA-AATAGTCCTTACGG
* *
76343736 ACTCTTGCTTG-AAATAGTCCATATGG
1 ACTCTTGCTTGAAAATAGTCCTTACGG
* * *
76343762 ACTCTTTCTTGAAAGATAGTCCATGCGG
1 ACTCTTGCTTGAAA-ATAGTCCTTACGG
* * * *
76343790 ACTTTTTCTTGAAGAATAGTCTTTACGA
1 ACTCTTGCTTGAA-AATAGTCCTTACGG
76343818 ACTCTTGCTTGAAAGATAGTCC
1 ACTCTTGCTTGAAA-ATAGTCC
76343840 ATTTAGACTT
Statistics
Matches: 106, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 19 0.18
27 4 0.04
28 82 0.77
29 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
ACTCTTGCTTGAAAATAGTCCTTACGG
Found at i:76343817 original size:82 final size:84
Alignment explanation
Indices: 76343675--76343841 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 84
76343665 GGTTAGTTCT
*
76343675 TATGAACTCTTGCTTGAAGAATAGTCCTTGCGGACTCCTGCTTGAAGAATAATCATTACGAACTC
1 TATGAACTCTTGCTTGAAGAATAGTCCATGCGGACTCCTGCTTGAAGAATAATCATTACGAACTC
76343740 TTGCTTG-AA-ATAGTCCA
66 TTGCTTGAAAGATAGTCCA
* * ** * * *
76343757 TATGGACTCTTTCTTGAA-AGATAGTCCATGCGGACTTTTTCTTGAAGAATAGTCTTTACGAACT
1 TATGAACTCTTGCTTGAAGA-ATAGTCCATGCGGACTCCTGCTTGAAGAATAATCATTACGAACT
76343821 CTTGCTTGAAAGATAGTCCA
65 CTTGCTTGAAAGATAGTCCA
76343841 T
1 T
76343842 TTAGACTTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 1 0.01
82 62 0.84
83 2 0.03
84 9 0.12
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (84 bp):
TATGAACTCTTGCTTGAAGAATAGTCCATGCGGACTCCTGCTTGAAGAATAATCATTACGAACTC
TTGCTTGAAAGATAGTCCA
Found at i:76351131 original size:187 final size:187
Alignment explanation
Indices: 76350816--76351189 Score: 739
Period size: 187 Copynumber: 2.0 Consensus size: 187
76350806 TATTCTTTTC
76350816 GCTTGTAGTTGCAGGTTGTAATTTTTTTTTTTGTGAATAATAAAATTATGGGTAAATTACACCAA
1 GCTTGTAGTTGCAGGTTGTAATTTTTTTTTTTGTGAATAATAAAATTATGGGTAAATTACACCAA
76350881 CAGCCATTTAATTTTGGGTAGTTAACAAAACAGTCACCTAGGTTTCATTTCAGTTACTCAACTTT
66 CAGCCATTTAATTTTGGGTAGTTAACAAAACAGTCACCTAGGTTTCATTTCAGTTACTCAACTTT
76350946 TGAAAAATAATAAAACAGTCACTGACATTATAAAAAAGTGACAAAACAACCACTGAT
131 TGAAAAATAATAAAACAGTCACTGACATTATAAAAAAGTGACAAAACAACCACTGAT
*
76351003 GCTTGTAGTTGTAGGTTGTAATTTTTTTTTTTGTGAATAATAAAATTATGGGTAAATTACACCAA
1 GCTTGTAGTTGCAGGTTGTAATTTTTTTTTTTGTGAATAATAAAATTATGGGTAAATTACACCAA
76351068 CAGCCATTTAATTTTGGGTAGTTAACAAAACAGTCACCTAGGTTTCATTTCAGTTACTCAACTTT
66 CAGCCATTTAATTTTGGGTAGTTAACAAAACAGTCACCTAGGTTTCATTTCAGTTACTCAACTTT
76351133 TGAAAAATAATAAAACAGTCACTGACATTATAAAAAAGTGACAAAACAACCACTGAT
131 TGAAAAATAATAAAACAGTCACTGACATTATAAAAAAGTGACAAAACAACCACTGAT
76351190 TAACAGTTTT
Statistics
Matches: 186, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
187 186 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (187 bp):
GCTTGTAGTTGCAGGTTGTAATTTTTTTTTTTGTGAATAATAAAATTATGGGTAAATTACACCAA
CAGCCATTTAATTTTGGGTAGTTAACAAAACAGTCACCTAGGTTTCATTTCAGTTACTCAACTTT
TGAAAAATAATAAAACAGTCACTGACATTATAAAAAAGTGACAAAACAACCACTGAT
Found at i:76352207 original size:30 final size:31
Alignment explanation
Indices: 76352142--76352210 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
76352132 ACTATTAATC
* *
76352142 AGTGACTGTTTTGTCACTTTTTTATAATGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
*
76352173 AGTGACTGTTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
76352202 AAGTGACTG
1 -AGTGACTG
76352211 AAATGAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 14 0.41
31 15 0.44
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (31 bp):
AGTGACTGTTTTGTCACTTTTTCATAAAGTT
Found at i:76354210 original size:22 final size:22
Alignment explanation
Indices: 76354182--76354298 Score: 92
Period size: 25 Copynumber: 5.0 Consensus size: 22
76354172 GGCCCTTATG
76354182 GTATTCTATTAGCCTTTGTGGC
1 GTATTCTATTAGCCTTTGTGGC
* * *
76354204 ATATTCTGTTAGCTTTTGTGGC
1 GTATTCTATTAGCCTTTGTGGC
* *
76354226 GTATTATGTATGTTGCCTTTGTGGC
1 GTA-T-TCTAT-TAGCCTTTGTGGC
76354251 GTATTCTGTATGTTA-CCTTTGTGGC
1 GTATTC--TA--TTAGCCTTTGTGGC
* *
76354276 GTATTCTGATTGGCCCTTGTGGC
1 GTATTCT-ATTAGCCTTTGTGGC
76354299 ATACTCTAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 17
0.72 0.12 0.17
Matches are distributed among these distances:
22 23 0.31
23 12 0.16
24 5 0.07
25 32 0.43
26 1 0.01
27 1 0.01
ACGTcount: A:0.12, C:0.16, G:0.26, T:0.46
Consensus pattern (22 bp):
GTATTCTATTAGCCTTTGTGGC
Found at i:76354281 original size:25 final size:25
Alignment explanation
Indices: 76354218--76354283 Score: 114
Period size: 25 Copynumber: 2.6 Consensus size: 25
76354208 TCTGTTAGCT
* *
76354218 TTTGTGGCGTATTATGTATGTTGCC
1 TTTGTGGCGTATTCTGTATGTTACC
76354243 TTTGTGGCGTATTCTGTATGTTACC
1 TTTGTGGCGTATTCTGTATGTTACC
76354268 TTTGTGGCGTATTCTG
1 TTTGTGGCGTATTCTG
76354284 ATTGGCCCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.11, C:0.14, G:0.27, T:0.48
Consensus pattern (25 bp):
TTTGTGGCGTATTCTGTATGTTACC
Found at i:76356404 original size:29 final size:30
Alignment explanation
Indices: 76356346--76356404 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76356336 AAACATTTTT
76356346 ACTTTCCCTCCAAAACCTTTACACCCTCCC
1 ACTTTCCCTCCAAAACCTTTACACCCTCCC
*
76356376 ACTTTCCC-CCTAAAACTTTTAC-CCCTCCC
1 ACTTTCCCTCC-AAAACCTTTACACCCTCCC
76356405 CCCAGTCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.22, C:0.49, G:0.00, T:0.29
Consensus pattern (30 bp):
ACTTTCCCTCCAAAACCTTTACACCCTCCC
Found at i:76360504 original size:19 final size:19
Alignment explanation
Indices: 76360443--76360504 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
76360433 ACGGCCTACC
76360443 AACACCTCCACCACCGAGT
1 AACACCTCCACCACCGAGT
* * **
76360462 AACATCATCCA-CAGCCCACC
1 AACA-CCTCCACCA-CCGAGT
76360482 AACACCTCCACCACCGAGT
1 AACACCTCCACCACCGAGT
76360501 AACA
1 AACA
76360505 TCATCCATAG
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.35, C:0.47, G:0.08, T:0.10
Consensus pattern (19 bp):
AACACCTCCACCACCGAGT
Found at i:76360531 original size:39 final size:39
Alignment explanation
Indices: 76360440--76360532 Score: 114
Period size: 39 Copynumber: 2.4 Consensus size: 39
76360430 GTTACGGCCT
**
76360440 ACCAACACCTCCACCACCGAGTAACATCATCCACAGCCC
1 ACCAACAAATCCACCACCGAGTAACATCATCCACAGCCC
** * *
76360479 ACCAACACCTCCACCACCGAGTAACATCATCCATAGTCC
1 ACCAACAAATCCACCACCGAGTAACATCATCCACAGCCC
* *
76360518 GCCAGCAAATCCACC
1 ACCAACAAATCCACC
76360533 GGAAGCAGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.33, C:0.46, G:0.09, T:0.12
Consensus pattern (39 bp):
ACCAACAAATCCACCACCGAGTAACATCATCCACAGCCC
Found at i:76374449 original size:13 final size:13
Alignment explanation
Indices: 76374431--76374475 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
76374421 ACATTGTTAA
76374431 ACTTTTTAAAAGC
1 ACTTTTTAAAAGC
* *
76374444 ACTTTTTCACAGC
1 ACTTTTTAAAAGC
*
76374457 ACTTTTCAAAAGC
1 ACTTTTTAAAAGC
76374470 A-TTTTT
1 ACTTTTT
76374476 CAACCTCAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
12 4 0.15
13 22 0.85
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (13 bp):
ACTTTTTAAAAGC
Found at i:76376747 original size:22 final size:22
Alignment explanation
Indices: 76376716--76376761 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
76376706 TCAGGAGCCC
76376716 AAAACCGAGACCAAAACCCAAA
1 AAAACCGAGACCAAAACCCAAA
* *
76376738 AAAACTGAGACCAAGACCCAAA
1 AAAACCGAGACCAAAACCCAAA
76376760 AA
1 AA
76376762 TTGGTTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.59, C:0.28, G:0.11, T:0.02
Consensus pattern (22 bp):
AAAACCGAGACCAAAACCCAAA
Found at i:76377120 original size:11 final size:11
Alignment explanation
Indices: 76377047--76377122 Score: 61
Period size: 11 Copynumber: 6.8 Consensus size: 11
76377037 ATTCCAAAAA
*
76377047 TAATATTATTT
1 TAATATTAATT
76377058 TAATAGTTTAATAT
1 TAATA--TTAAT-T
76377072 TAA-ATTTAATT
1 TAATA-TTAATT
*
76377083 TAATATTTATGT
1 TAATATTAAT-T
76377095 TAATATT-ATT
1 TAATATTAATT
76377105 T--TATTAATT
1 TAATATTAATT
76377114 TAATATTAA
1 TAATATTAA
76377123 AATGATTATC
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
8 4 0.07
9 4 0.07
10 2 0.04
11 21 0.38
12 15 0.27
13 5 0.09
14 4 0.07
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (11 bp):
TAATATTAATT
Found at i:76377140 original size:68 final size:69
Alignment explanation
Indices: 76377065--76377199 Score: 209
Period size: 68 Copynumber: 2.0 Consensus size: 69
76377055 TTTTAATAGT
* * * *
76377065 TTAATATTAAATTTAATTTAATATTTATGTTAATAT-TATTTTATTAATTTAATATTAAAATGAT
1 TTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAATTTAACATTAAAATGAT
76377129 TATC
66 TATC
* *
76377133 TTAATATTAAATTTAATCTAATATTTATCTTGATATATATTATATTAATTTAACATTAAAGTGAT
1 TTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAATTTAACATTAAAATGAT
76377198 TA
66 TA
76377200 AGTTTAATCA
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
68 33 0.55
69 27 0.45
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (69 bp):
TTAATATTAAATTTAATCTAATATTTATCTTAATATATATTATATTAATTTAACATTAAAATGAT
TATC
Found at i:76378300 original size:24 final size:26
Alignment explanation
Indices: 76378246--76378303 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
76378236 ACCTATCTCA
*
76378246 TTATATATATATATATTTTATAATTGT
1 TTATA-ATATATATATTATATAATTGT
* *
76378273 TTATAATATTTATATTATGTAA-TG-
1 TTATAATATATATATTATATAATTGT
76378297 TTATAAT
1 TTATAAT
76378304 TGTGATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 7 0.25
25 2 0.07
26 14 0.50
27 5 0.18
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (26 bp):
TTATAATATATATATTATATAATTGT
Found at i:76378321 original size:34 final size:33
Alignment explanation
Indices: 76378247--76378322 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 33
76378237 CCTATCTCAT
* *
76378247 TATATATA-TATATATTTTATAATTGTTTATAA
1 TATATATATTATATATGTTATAATTGTATATAA
* *
76378279 TATTTATATTATGTAATGTTATAATTGTGATATATA
1 TATATATATTATAT-ATGTTATAATTGT-ATATA-A
76378315 TATATATA
1 TATATATA
76378323 AGATGATCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
32 7 0.20
33 4 0.11
34 12 0.34
35 4 0.11
36 8 0.23
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (33 bp):
TATATATATTATATATGTTATAATTGTATATAA
Found at i:76379608 original size:17 final size:19
Alignment explanation
Indices: 76379579--76379613 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
76379569 CCCTCGTCCT
76379579 CTAAGGAGAAAT-AGAAAG
1 CTAAGGAGAAATAAGAAAG
76379597 CTAAGG-GAAATAAGAAA
1 CTAAGGAGAAATAAGAAA
76379614 TTGATTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.57, C:0.06, G:0.26, T:0.11
Consensus pattern (19 bp):
CTAAGGAGAAATAAGAAAG
Found at i:76382048 original size:45 final size:45
Alignment explanation
Indices: 76381971--76382056 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
76381961 AGATACTCGG
* * *
76381971 TGGATTCATCACATAGAAACCACCTTATTAATCAATGATGTCCGA
1 TGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGTCCGA
*
76382016 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGT
76382057 TCGGTTCACA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.27
Consensus pattern (45 bp):
TGGAATCAGCACATAGAAACCACCTTACTAATCAATGATGTCCGA
Found at i:76382129 original size:51 final size:50
Alignment explanation
Indices: 76382058--76382355 Score: 310
Period size: 51 Copynumber: 5.9 Consensus size: 50
76382048 CAATGATGTT
* * * *
76382058 CGGTTCACATAGTAGTCTGCACATAGTACTACACAGGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * * * **
76382109 CGATACACGTAGTAGCCTGCACATAGTGCTACACACGTGATCGAAATTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* ** * * *
76382160 TGGTATGCATAGTAGCCTGCACATAGTACTACACATGTTACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * * * *
76382211 CGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
76382262 CGGTACTCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
76382312 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
76382356 CACTTTCACT
Statistics
Matches: 195, Mismatches: 47, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
49 2 0.01
50 43 0.22
51 146 0.75
52 4 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:76382203 original size:102 final size:102
Alignment explanation
Indices: 76382065--76382351 Score: 445
Period size: 102 Copynumber: 2.8 Consensus size: 102
76382055 GTTCGGTTCA
* *
76382065 CATAGTAGTCTGCACATAGTACTACACAGGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
* * *
76382130 CATAGTGCTACACACGTGATCGAAATTATCTGGTA-T
66 CATAGTACTACACACGTGATCGAAACTATCCGGTACT
* *
76382166 GCATAGTAGCCTGCACATAGTACTACACATGTTACCATTACCATCCGATACACGTAGTAGCCTAC
1 -CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGC
76382231 ACATAGTACTACACACGTGATCGAAACTATCCGGTACT
65 ACATAGTACTACACACGTGATCGAAACTATCCGGTACT
* * *
76382269 CATAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTCCGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCA-TCCGATACACGTAGTAGCCTGC
76382332 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
76382352 CCATCACTTT
Statistics
Matches: 171, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
100 4 0.02
101 40 0.23
102 126 0.74
103 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAACTATCCGGTACT
Found at i:76388026 original size:37 final size:36
Alignment explanation
Indices: 76387975--76388082 Score: 105
Period size: 37 Copynumber: 2.9 Consensus size: 36
76387965 ATTCCAAAAA
*
76387975 TAATA-TTATTTTAATAGTTTAATATTAAATTTAAT-T
1 TAATACTTATCTTAATA-TTTAATATT-AATTTAATAT
**
76388011 TAATACTTATCTTAATATTATTTTATTAATTTAATAT
1 TAATACTTATCTTAATATT-TAATATTAATTTAATAT
* *
76388048 TAAAACGATTATCTTAATATTAAAT-TTAATTTAAT
1 TAATAC--TTATCTTAATATTTAATATTAATTTAAT
76388083 GTTTATCTTG
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
36 15 0.25
37 31 0.52
38 1 0.02
39 13 0.22
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (36 bp):
TAATACTTATCTTAATATTTAATATTAATTTAATAT
Found at i:76388048 original size:11 final size:11
Alignment explanation
Indices: 76387975--76388050 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 11
76387965 ATTCCAAAAA
*
76387975 TAATATTATTT
1 TAATATTAATT
76387986 TAATAGTTTAATAT
1 TAATA--TTAAT-T
76388000 TAA-ATTTAATT
1 TAATA-TTAATT
76388011 TAATACTT-ATCT
1 TAATA-TTAAT-T
76388023 TAATATT-ATT
1 TAATATTAATT
76388033 T--TATTAATT
1 TAATATTAATT
76388042 TAATATTAA
1 TAATATTAA
76388051 AACGATTATC
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
8 4 0.07
9 4 0.07
10 2 0.04
11 21 0.38
12 15 0.27
13 5 0.09
14 4 0.07
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:76388064 original size:39 final size:37
Alignment explanation
Indices: 76387997--76388069 Score: 103
Period size: 39 Copynumber: 1.9 Consensus size: 37
76387987 AATAGTTTAA
*
76387997 TATTAAATTTAATTTAATACTTATCTTAATATTATTT
1 TATTAAATTTAATTTAAAACTTATCTTAATATTATTT
76388034 TATT-AATTTAATATTAAAACGATTATCTTAATATTA
1 TATTAAATTTAAT-TTAAAAC--TTATCTTAATATTA
76388070 AATTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 8 0.25
37 10 0.31
39 14 0.44
ACGTcount: A:0.41, C:0.05, G:0.01, T:0.52
Consensus pattern (37 bp):
TATTAAATTTAATTTAAAACTTATCTTAATATTATTT
Found at i:76388130 original size:62 final size:60
Alignment explanation
Indices: 76388061--76388178 Score: 164
Period size: 62 Copynumber: 1.9 Consensus size: 60
76388051 AACGATTATC
* * * * *
76388061 TTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAAATTAATCTAATATTTATCTTG-A-ATAAACATTATATTAATTTAATAAGAT
*
76388123 TTAATATTAAAATTAATCTAATATTTATCTTGAATAAATATTATATTAATTTAATA
1 TTAATATTAAAATTAATCTAATATTTATCTTGAATAAACATTATATTAATTTAATA
76388179 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
60 20 0.40
61 1 0.02
62 29 0.58
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (60 bp):
TTAATATTAAAATTAATCTAATATTTATCTTGAATAAACATTATATTAATTTAATAAGAT
Found at i:76388469 original size:193 final size:193
Alignment explanation
Indices: 76388140--76388526 Score: 774
Period size: 193 Copynumber: 2.0 Consensus size: 193
76388130 TAAAATTAAT
76388140 CTAATATTTATCTTGAATAAATATTATATTAATTTAATATTAAAGTGATTAAGTTTAATCATAGT
1 CTAATATTTATCTTGAATAAATATTATATTAATTTAATATTAAAGTGATTAAGTTTAATCATAGT
76388205 TGAACTCTCTACACTCTCTTTATATAAAGAGAGCCTTGGGTCAATTTGAATTCAAGAGAAAGTTG
66 TGAACTCTCTACACTCTCTTTATATAAAGAGAGCCTTGGGTCAATTTGAATTCAAGAGAAAGTTG
76388270 TAGAGAAAAAAATTCTCTAAAGAGATTATTCTAGAAAATTTCTAGAGATATTTTTCTGATTTA
131 TAGAGAAAAAAATTCTCTAAAGAGATTATTCTAGAAAATTTCTAGAGATATTTTTCTGATTTA
76388333 CTAATATTTATCTTGAATAAATATTATATTAATTTAATATTAAAGTGATTAAGTTTAATCATAGT
1 CTAATATTTATCTTGAATAAATATTATATTAATTTAATATTAAAGTGATTAAGTTTAATCATAGT
76388398 TGAACTCTCTACACTCTCTTTATATAAAGAGAGCCTTGGGTCAATTTGAATTCAAGAGAAAGTTG
66 TGAACTCTCTACACTCTCTTTATATAAAGAGAGCCTTGGGTCAATTTGAATTCAAGAGAAAGTTG
76388463 TAGAGAAAAAAATTCTCTAAAGAGATTATTCTAGAAAATTTCTAGAGATATTTTTCTGATTTA
131 TAGAGAAAAAAATTCTCTAAAGAGATTATTCTAGAAAATTTCTAGAGATATTTTTCTGATTTA
76388526 C
1 C
76388527 AACTTGAACC
Statistics
Matches: 194, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
193 194 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (193 bp):
CTAATATTTATCTTGAATAAATATTATATTAATTTAATATTAAAGTGATTAAGTTTAATCATAGT
TGAACTCTCTACACTCTCTTTATATAAAGAGAGCCTTGGGTCAATTTGAATTCAAGAGAAAGTTG
TAGAGAAAAAAATTCTCTAAAGAGATTATTCTAGAAAATTTCTAGAGATATTTTTCTGATTTA
Found at i:76392745 original size:2 final size:2
Alignment explanation
Indices: 76392738--76392762 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
76392728 TCTTTAAGTT
76392738 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
76392763 TAAATGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76394596 original size:40 final size:41
Alignment explanation
Indices: 76394522--76394601 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
76394512 ACATAATAAA
76394522 AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAAAT
1 AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAAAT
76394563 AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAA
1 AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAA
76394602 TGAGATGGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (41 bp):
AAAAATTATTGGGATAAAAAATGGTTTTGAAAAAATAAAAT
Found at i:76394610 original size:23 final size:24
Alignment explanation
Indices: 76394583--76394629 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
76394573 GGGATAAAAA
76394583 ATGGTTTTG-AAAAAATAAATGAG
1 ATGGTTTTGAAAAAAATAAATGAG
76394606 ATGGTTTTGAAAAAAAATAAATGA
1 ATGGTTTTG-AAAAAAATAAATGA
76394630 TTGACTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 9 0.41
25 13 0.59
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (24 bp):
ATGGTTTTGAAAAAAATAAATGAG
Found at i:76395676 original size:113 final size:113
Alignment explanation
Indices: 76395248--76395655 Score: 554
Period size: 113 Copynumber: 3.6 Consensus size: 113
76395238 TTACAACCAC
* * * * * * * *
76395248 GCGCCGCAAAATCTCCTATCCAAAACGCAAT-G-TTTTCGTCTTTATGTATGCAAGAATTAGTGG
1 GCGCCGCAAAATATCTTAACCAAAACGC-ATCGTTTTTAGTGTTGATGTATCCTAGAATTAGTGG
* * * * * * *
76395311 CGCTTC-AAAAAACATGCCGCTAAAGTGTCTTAGCGGCGTTTTAC-ACCAAC
65 CGCTTCTAAAAAA-ACGCCGCGAAAGCGTCTTAGCGGCGTATTGCGA--TAT
* ** * *
76395361 GCGCCGTAATTTCTCCTAACCAAAACGCATCGTTTTTAGTGTTGATGTATCCTAGAATTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCATCGTTTTTAGTGTTGATGTATCCTAGAATTAGTGGC
76395426 GCTTCTAAAAAAACGCCGCGAAAGCGTCTTAGCGGCGTATTGCGATAT
66 GCTTCTAAAAAAACGCCGCGAAAGCGTCTTAGCGGCGTATTGCGATAT
76395474 GCGCCGCAAAATATCTTAACCAAAACGCATCGTTTTTAGTGTTGATGTATCCTAGAATTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCATCGTTTTTAGTGTTGATGTATCCTAGAATTAGTGGC
76395539 GCTTCTAAAAAAACGCCGCGAAAGCGTCTTAGCGGCGTATTGCGATAT
66 GCTTCTAAAAAAACGCCGCGAAAGCGTCTTAGCGGCGTATTGCGATAT
* *
76395587 GCGCCGCAAAATATCTTAACCAAAACGCATCGTTTTTGGTGTTGATGTATCCTAGATTTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCATCGTTTTTAGTGTTGATGTATCCTAGAATTAGTGGC
76395652 GCTT
66 GCTT
76395656 TGTGATATGC
Statistics
Matches: 268, Mismatches: 23, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
112 2 0.01
113 201 0.75
114 58 0.22
115 7 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (113 bp):
GCGCCGCAAAATATCTTAACCAAAACGCATCGTTTTTAGTGTTGATGTATCCTAGAATTAGTGGC
GCTTCTAAAAAAACGCCGCGAAAGCGTCTTAGCGGCGTATTGCGATAT
Found at i:76396046 original size:77 final size:76
Alignment explanation
Indices: 76395872--76396050 Score: 211
Period size: 77 Copynumber: 2.3 Consensus size: 76
76395862 TATGTTACAT
* **
76395872 TTAGTGGCGCTTA-TAGGAAAACGCCGCAAAAAATCTGAACCAAAACGCATCGTTTTGGTCTCGA
1 TTAGTGGCGCTTACTA-GAAAACGCCGCAAAAAATCTGAACCAAAACGCATAGTTTTAATCTCGA
76395936 TGTATACTTCAA
65 TGTATACTTCAA
* * * * * * *
76395948 TTAGTGGCGCTGACGT-TAAAACGTCGCAAAAATATCTTAACCAAAACGCGTAGTTTTAATTTTG
1 TTAGTGGCGCTTAC-TAGAAAACGCCGCAAAAA-ATCTGAACCAAAACGCATAGTTTTAATCTCG
76396012 ATGTATACTT-ATA
64 ATGTATACTTCA-A
76396025 TTAGTGGCGCTTACTAGAAAACGCCG
1 TTAGTGGCGCTTACTAGAAAACGCCG
76396051 TTAAAGAATA
Statistics
Matches: 85, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
76 28 0.33
77 56 0.66
78 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (76 bp):
TTAGTGGCGCTTACTAGAAAACGCCGCAAAAAATCTGAACCAAAACGCATAGTTTTAATCTCGAT
GTATACTTCAA
Found at i:76396184 original size:266 final size:266
Alignment explanation
Indices: 76395710--76396245 Score: 955
Period size: 266 Copynumber: 2.0 Consensus size: 266
76395700 AAAGCGCCAC
* *
76395710 AAAATATCTTTACTAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
1 AAAATATCTTAACCAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
* *
76395775 GAAAACGCCGTTAAAGAATAGCTTTAGCGGCGCTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
66 GAAAACGCCGTTAAAGAATAGCTTTAGCAGCACTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
76395840 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAAAA
131 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAAAA
* *
76395905 TCTGAACCAAAACGCATCGTTTTGGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
196 TCTGAACCAAAACGCACCGTTTTAGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
*
76395970 GTCGCA
261 GCCGCA
76395976 AAAATATCTTAACCAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
1 AAAATATCTTAACCAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
* *
76396041 GAAAACGCCGTTAAAGAATAGCTTTAGCAGCACTTGATCCAAAGTGCCGCAACGTATCTTAACAA
66 GAAAACGCCGTTAAAGAATAGCTTTAGCAGCACTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
* * * *
76396106 AACGTAGTGTTTTGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCTGCAAAATA
131 AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAAAA
76396171 TCTGAACCAAAACGCACCGTTTTAGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
196 TCTGAACCAAAACGCACCGTTTTAGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
76396236 GCCGCA
261 GCCGCA
76396242 AAAA
1 AAAA
76396246 AGCAAAATAC
Statistics
Matches: 257, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
266 257 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (266 bp):
AAAATATCTTAACCAAAACGCGTAGTTTTAATTTTGATGTATACTTATATTAGTGGCGCTTACTA
GAAAACGCCGTTAAAGAATAGCTTTAGCAGCACTTGAGCCAAAGCGCCGCAACGTATCTTAACAA
AACGCAGTGTTTGGTCTTAAGCTATGTTACATTTAGTGGCGCTTATAGGAAAACGCCGCAAAAAA
TCTGAACCAAAACGCACCGTTTTAGTCTCGATGTATACTTCAATTAGTGGCGCTGACGTTAAAAC
GCCGCA
Found at i:76396844 original size:15 final size:14
Alignment explanation
Indices: 76396824--76396873 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
76396814 TAAGGTTTGT
76396824 AGTTTAGGGTTTAA
1 AGTTTAGGGTTTAA
**
76396838 GAGTTTAAAGTTTAA
1 -AGTTTAGGGTTTAA
*
76396853 AGGTTACGGGTTTAA
1 AGTTTA-GGGTTTAA
76396868 AGTTTA
1 AGTTTA
76396874 AAGGTTACGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 5 0.18
15 23 0.82
ACGTcount: A:0.32, C:0.02, G:0.26, T:0.40
Consensus pattern (14 bp):
AGTTTAGGGTTTAA
Found at i:76396849 original size:22 final size:21
Alignment explanation
Indices: 76396824--76396880 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
76396814 TAAGGTTTGT
*
76396824 AGTTTAGGGTTTAAGAGTTTAA
1 AGTTTAAGG-TTAAGAGTTTAA
* *
76396846 AGTTTAAAGGTTACGGGTTTAA
1 AGTTT-AAGGTTAAGAGTTTAA
76396868 AGTTTAAAGGTTA
1 AGTTT-AAGGTTA
76396881 CGGGTTAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 28 0.90
23 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (21 bp):
AGTTTAAGGTTAAGAGTTTAA
Found at i:76396850 original size:29 final size:30
Alignment explanation
Indices: 76396794--76396876 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 30
76396784 TTTTGAGTGT
* * *
76396794 AAGGTTACGGGTTT-AGAGTGTAAGGTTTG
1 AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
* *
76396823 TAGTTTA-GGGTTTAAGAGTTTAAAGTTTA
1 AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
76396852 AAGGTTACGGGTTTAA-AGTTTAAAG
1 AAGGTTACGGGTTTAAGAGTTTAAAG
76396877 GTTACGGGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
28 6 0.13
29 31 0.69
30 8 0.18
ACGTcount: A:0.30, C:0.02, G:0.30, T:0.37
Consensus pattern (30 bp):
AAGGTTACGGGTTTAAGAGTTTAAAGTTTA
Found at i:76396879 original size:15 final size:15
Alignment explanation
Indices: 76396831--76396879 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
76396821 TGTAGTTTAG
76396831 GGTTTAAGAGTTTAAA
1 GGTTTAA-AGTTTAAA
* **
76396847 -GTTTAAAGGTTACG
1 GGTTTAAAGTTTAAA
76396861 GGTTTAAAGTTTAAA
1 GGTTTAAAGTTTAAA
76396876 GGTT
1 GGTT
76396880 ACGGGTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
14 5 0.19
15 21 0.81
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.39
Consensus pattern (15 bp):
GGTTTAAAGTTTAAA
Found at i:76396881 original size:22 final size:22
Alignment explanation
Indices: 76396840--76396892 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
76396830 GGGTTTAAGA
76396840 GTTTAAAGTTTAAAGGTTACGG
1 GTTTAAAGTTTAAAGGTTACGG
76396862 GTTTAAAGTTTAAAGGTTACGG
1 GTTTAAAGTTTAAAGGTTACGG
76396884 G-TTAAAGTT
1 GTTTAAAGTT
76396893 AGGGGCCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 8 0.26
22 23 0.74
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.38
Consensus pattern (22 bp):
GTTTAAAGTTTAAAGGTTACGG
Found at i:76402805 original size:21 final size:21
Alignment explanation
Indices: 76402779--76402847 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
76402769 CAACAACTTA
* *
76402779 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGAG
** *
76402800 AAGCAGAGGCTACAGCGAAAG
1 AAGCAGAGGCCGCAGCGAGAG
76402821 AAGCAGAGGCCGCAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
76402842 AAGCAG
1 AAGCAG
76402848 CGATAGAAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.36, C:0.20, G:0.42, T:0.01
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGAG
Found at i:76403333 original size:42 final size:41
Alignment explanation
Indices: 76403280--76403532 Score: 217
Period size: 42 Copynumber: 6.0 Consensus size: 41
76403270 GCATTTGTGA
76403280 AACAAGCGCCGCTAAAGAACACTACT-TTTAGCGGCGTTTTT
1 AACAAGCGCCGCTAAAGAACA-TACTCTTTAGCGGCGTTTTT
*
76403321 GAACAAGCGCCGCTAAAGAACACTACT-TTTAGAGGCGTTTTCT
1 -AACAAGCGCCGCTAAAGAACA-TACTCTTTAGCGGCGTTTT-T
**
76403364 TCCAAAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCGTTTTT
1 AAC-AAGCGCCGCTAAAGAACAT-ACTCTTTAGCGGCGTTTTT
** * **
76403406 TCCTAAGCACCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTT
1 AAC-AAGCGCCGCTAAAGAACATACTCTTTAGCGGCG-TTTTT
* * * *
76403449 CATAAGCGCCGCGAAAGAACATGA-TCTTTAGTGGCGTGTATTT
1 AACAAGCGCCGCTAAAGAACAT-ACTCTTTAGCGGCGT-T-TTT
***** *
76403492 TTTTTGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTT
1 AACAAGCGCCGCTAAAGAACATACTCTTTAGCGGCGTTTTT
76403533 TTCTGTAAGC
Statistics
Matches: 181, Mismatches: 20, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
41 4 0.02
42 107 0.59
43 70 0.39
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (41 bp):
AACAAGCGCCGCTAAAGAACATACTCTTTAGCGGCGTTTTT
Found at i:76403384 original size:85 final size:84
Alignment explanation
Indices: 76403283--76403533 Score: 253
Period size: 85 Copynumber: 3.0 Consensus size: 84
76403273 TTTGTGAAAC
*
76403283 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGAAC-AAGCGCCGCTAAAGAACACT
1 AAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-AACTAAGCACCGCTAAAGAACA-T
76403345 ACT-TTTAGAGGCGTTTTCTTCCA-
62 ACTCTTTAGAGGCGTTTT-TT-CAT
** **
76403368 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCACCGCTAAAGAACATGGTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTAACTAAGCACCGCTAAAGAACATACTC
*
76403433 TTTAGCGGCGTTTTTTCAT
66 TTTAGAGGCGTTTTTTCAT
* * ** ** * *
76403452 AAGCGCCGCGAAAGAACATGATCTTTAGTGGCGTGTATTT-TTTTTGCGCCGCTAAAGAACATAA
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGT-T-TTTAACTAAGCACCGCTAAAGAACATAC
*
76403516 TCTTTAGCGGCGTTTTTT
64 TCTTTAGAGGCGTTTTTT
76403534 TCTGTAAGCA
Statistics
Matches: 144, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
83 2 0.01
84 38 0.26
85 100 0.69
86 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.31
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTAACTAAGCACCGCTAAAGAACATACTC
TTTAGAGGCGTTTTTTCAT
Found at i:76403456 original size:127 final size:129
Alignment explanation
Indices: 76403283--76403552 Score: 311
Period size: 127 Copynumber: 2.1 Consensus size: 129
76403273 TTTGTGAAAC
* *
76403283 AAGCGCCGCTAAAGAACACTACTTTTAGCGGCGTTTTTGAACAAGCGCCGCTAAAGAACACT-A-
1 AAGCACCGCTAAAGAACACTACTTTTAGCGGCGTTTTTGAACAAGCGCCGCGAAAGAACA-TGAT
*
76403346 CTTTTAGAGGCGT-T-TTCTTCCAAAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTC
65 C-TTTAGAGGCGTGTATT-TT-CAAAGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTTTTC
76403408 -CT
127 TCT
** ** *
76403410 AAGCACCGCTAAAGAACA-TGGTCTTTAGCGGCGTTTTTTCATAAGCGCCGCGAAAGAACATGAT
1 AAGCACCGCTAAAGAACACTACT-TTTAGCGGCGTTTTTGAACAAGCGCCGCGAAAGAACATGAT
* **** *
76403474 CTTTAGTGGCGTGTATTTTTTTTGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTTTTCTGT
65 CTTTAGAGGCGTGTATTTTCAAAGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTTTTCTCT
*
76403539 AAGCACCGCAAAAG
1 AAGCACCGCTAAAG
76403553 TTAGCGACGT
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
126 3 0.02
127 91 0.75
128 11 0.09
129 16 0.13
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (129 bp):
AAGCACCGCTAAAGAACACTACTTTTAGCGGCGTTTTTGAACAAGCGCCGCGAAAGAACATGATC
TTTAGAGGCGTGTATTTTCAAAGCGCCGCTAAAGAACATAATCTTTAGCGGCGTTTTTTTCTCT
Found at i:76404148 original size:15 final size:15
Alignment explanation
Indices: 76404128--76404156 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
76404118 ATAGCAAATG
76404128 TTTGACTTAATTTTA
1 TTTGACTTAATTTTA
76404143 TTTGACTTAATTTT
1 TTTGACTTAATTTT
76404157 CAAGTTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTGACTTAATTTTA
Found at i:76408962 original size:26 final size:26
Alignment explanation
Indices: 76408926--76408979 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
76408916 AGATTGACAG
76408926 TATATCAGACATGGCCTAATCTGAAT
1 TATATCAGACATGGCCTAATCTGAAT
76408952 TATATCAGACATGGCCTAATCTGAAT
1 TATATCAGACATGGCCTAATCTGAAT
76408978 TA
1 TA
76408980 ATCCTAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (26 bp):
TATATCAGACATGGCCTAATCTGAAT
Found at i:76410701 original size:21 final size:21
Alignment explanation
Indices: 76410662--76410702 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
76410652 GGCCATAATG
*
76410662 ATGTTCATACATGCCATTAAC
1 ATGTTCATACATGCAATTAAC
*
76410683 ATGTTCATACATGGAATTAA
1 ATGTTCATACATGCAATTAA
76410703 AAGCCATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (21 bp):
ATGTTCATACATGCAATTAAC
Found at i:76418405 original size:33 final size:32
Alignment explanation
Indices: 76418363--76418625 Score: 150
Period size: 33 Copynumber: 7.8 Consensus size: 32
76418353 TCCCCCAAGG
76418363 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCG-ATCATTGGT
* *
76418396 GGTTGCTAAGTGCTGATTCCTCCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A---T-CAT-T---GGT
* *
76418438 GGTTGCTAAGTGCAGATTCCCC---CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGATCATTGGT
*
76418465 GGTTGCTAAGTGCTGATTTCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGA-TCATTGGT
* *
76418498 GGTTGCTAAGTGCTGATTCCTCCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A---T-CAT-T---GGT
* *
76418540 GGTTGCTAAGTGCAGATTCCCC---CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGATCATTGGT
76418567 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCG-ATCATTGGT
*
76418600 GGTTGCTAAGTGCTGAATCCACCGAT
1 GGTTGCTAAGTGCTGATTCC-CCGAT
76418626 AACGGACAAC
Statistics
Matches: 180, Mismatches: 19, Indels: 62
0.69 0.07 0.24
Matches are distributed among these distances:
27 41 0.23
28 4 0.02
31 4 0.02
32 4 0.02
33 62 0.34
34 10 0.06
35 1 0.01
37 2 0.01
38 4 0.02
39 2 0.01
41 4 0.02
42 42 0.23
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (32 bp):
GGTTGCTAAGTGCTGATTCCCCGATCATTGGT
Found at i:76418507 original size:102 final size:102
Alignment explanation
Indices: 76418331--76418615 Score: 527
Period size: 102 Copynumber: 2.8 Consensus size: 102
76418321 ATTGAATATA
*
76418331 AAGGGGGTTGCTAAGTGTTA-ATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGG
1 AAGGGGGTTGCTAAGTG-CAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGG
76418395 TGGTTGCTAAGTGCTGATTCCTCCGTATTTTAAATGTG
65 TGGTTGCTAAGTGCTGATTCCTCCGTATTTTAAATGTG
* *
76418433 AAGGGGGTTGCTAAGTGCAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTTCCCGACTCATTGGT
1 AAGGGGGTTGCTAAGTGCAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
76418498 GGTTGCTAAGTGCTGATTCCTCCGTATTTTAAATGTG
66 GGTTGCTAAGTGCTGATTCCTCCGTATTTTAAATGTG
76418535 AAGGGGGTTGCTAAGTGCAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 AAGGGGGTTGCTAAGTGCAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
76418600 GGTTGCTAAGTGCTGA
66 GGTTGCTAAGTGCTGA
76418616 ATCCACCGAT
Statistics
Matches: 177, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
101 1 0.01
102 176 0.99
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCAGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
GGTTGCTAAGTGCTGATTCCTCCGTATTTTAAATGTG
Found at i:76423089 original size:16 final size:16
Alignment explanation
Indices: 76423068--76423116 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
76423058 TTATTAAATT
76423068 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
76423084 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
76423099 AT-TATGTTTAAATATA
1 ATATAT-TTTAATTATA
76423115 AT
1 AT
76423117 TAAATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 11 0.39
16 15 0.54
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:76423335 original size:45 final size:44
Alignment explanation
Indices: 76423253--76423343 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 44
76423243 ACCTCTATTC
* *
76423253 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCAATTA
*** * *
76423297 CATTCAACCAAACAGTTGATTTGCTATTACATCTCTATTCAATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCAATTA
76423342 CA
1 CA
76423344 CCTCTATTCC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 16 0.41
45 23 0.59
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCAATTA
Found at i:76423370 original size:16 final size:16
Alignment explanation
Indices: 76423322--76423375 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
76423312 TTGATTTGCT
* *
76423322 ATTACATCTCTATTCA
1 ATTACACCTCTATTCC
76423338 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
76423354 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
76423370 AATACA
1 ATTACA
76423376 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:76423625 original size:16 final size:16
Alignment explanation
Indices: 76423604--76423638 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
76423594 CCATTATGTG
76423604 CTATTCAATTACACCT
1 CTATTCAATTACACCT
*
76423620 CTATTCCATTACACCT
1 CTATTCAATTACACCT
76423636 CTA
1 CTA
76423639 ATCCAATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (16 bp):
CTATTCAATTACACCT
Found at i:76423643 original size:16 final size:16
Alignment explanation
Indices: 76423611--76423648 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
76423601 GTGCTATTCA
*
76423611 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
76423627 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
76423643 AATACA
1 ATTACA
76423649 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:76423818 original size:273 final size:273
Alignment explanation
Indices: 76423331--76423876 Score: 1047
Period size: 273 Copynumber: 2.0 Consensus size: 273
76423321 TATTACATCT
76423331 CTATTCAATTACACCTCTATTCCATTACACCTCTAATCCAATACAGCGAACCAAACGTGCCCTAA
1 CTATTCAATTACACCTCTATTCCATTACACCTCTAATCCAATACAGCGAACCAAACGTGCCCTAA
76423396 TATCGGTGGTTCCGAAAGAAAGGGTTACATGGGAATTCTTCCAGGAGGAATTCAGAAAGAAATAT
66 TATCGGTGGTTCCGAAAGAAAGGGTTACATGGGAATTCTTCCAGGAGGAATTCAGAAAGAAATAT
* *
76423461 ATAAGCCAGCGGTTTATTGACCAGAAACGCAAGGAGTTTCTTGAGTTGAAGCAGGGGCGAATGTC
131 ATAAGCCAGCGGTTTATTGACCAGAAACGCAAGGAGTTTCTTGAGTTAAAGCAGGGCCGAATGTC
*
76423526 TGTGGCAGAATATGAAAGGGAGTTTGTTAGGCTCAGCAAATATGCCCAGGAATGTGTACCCACGG
196 TGTGGCAGAATATGAAAGGGAGTTTGTTAGGCTCAGCAAAAATGCCCAGGAATGTGTACCCACGG
76423591 AAGCCATTATGTG
261 AAGCCATTATGTG
76423604 CTATTCAATTACACCTCTATTCCATTACACCTCTAATCCAATACAGCGAACCAAACGTGCCCTAA
1 CTATTCAATTACACCTCTATTCCATTACACCTCTAATCCAATACAGCGAACCAAACGTGCCCTAA
76423669 TATCGGTGGTTCCGAAAGAAAGGGTTACATGGGAATTCTTCCAGGAGGAATTCAGAAAGAAATAT
66 TATCGGTGGTTCCGAAAGAAAGGGTTACATGGGAATTCTTCCAGGAGGAATTCAGAAAGAAATAT
* *
76423734 ATAAGCCAGCGGTTTATTGATCAGAAACGCAATGAGTTTCTTGAGTTAAAGCAGGGCCGAATGTC
131 ATAAGCCAGCGGTTTATTGACCAGAAACGCAAGGAGTTTCTTGAGTTAAAGCAGGGCCGAATGTC
76423799 TGTGGCAGAATATGAAAGGGAGTTTGTTAGGCTCAGCAAAAATGCCCAGGAATGTGTACCCACGG
196 TGTGGCAGAATATGAAAGGGAGTTTGTTAGGCTCAGCAAAAATGCCCAGGAATGTGTACCCACGG
76423864 AAGCCATTATGTG
261 AAGCCATTATGTG
76423877 TAAAAGATTC
Statistics
Matches: 268, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
273 268 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (273 bp):
CTATTCAATTACACCTCTATTCCATTACACCTCTAATCCAATACAGCGAACCAAACGTGCCCTAA
TATCGGTGGTTCCGAAAGAAAGGGTTACATGGGAATTCTTCCAGGAGGAATTCAGAAAGAAATAT
ATAAGCCAGCGGTTTATTGACCAGAAACGCAAGGAGTTTCTTGAGTTAAAGCAGGGCCGAATGTC
TGTGGCAGAATATGAAAGGGAGTTTGTTAGGCTCAGCAAAAATGCCCAGGAATGTGTACCCACGG
AAGCCATTATGTG
Found at i:76428958 original size:33 final size:33
Alignment explanation
Indices: 76428916--76429123 Score: 130
Period size: 33 Copynumber: 5.7 Consensus size: 33
76428906 ATATAAAGGG
76428916 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* * *
76428949 GGTTGCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--AT-CAT-T---GGT
*
76428991 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
* ** *
76429024 GGTTGCTAAGTGTTGA-TCCCACTGTGTCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCCC-C-GAATC----AT-TG---GT
* *
76429066 GGTTGCTAAGTGTTGATACCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
*
76429099 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
76429124 TAAAGGACAA
Statistics
Matches: 137, Mismatches: 17, Indels: 41
0.70 0.09 0.21
Matches are distributed among these distances:
32 4 0.03
33 56 0.41
34 10 0.07
35 1 0.01
36 3 0.02
37 5 0.04
38 5 0.04
39 3 0.02
40 1 0.01
41 6 0.04
42 40 0.29
43 3 0.02
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCATTGGT
Found at i:76429034 original size:75 final size:75
Alignment explanation
Indices: 76428911--76429122 Score: 334
Period size: 75 Copynumber: 2.8 Consensus size: 75
76428901 ATTGAATATA
76428911 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
*
76428976 TTTAAATGTG
66 CTTAAATGTG
* * * * *
76428986 AAGGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGTTGATCCCACTGTGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
76429051 CTTAAATGTG
66 CTTAAATGTG
* * * *
76429061 AAAGGGGTTGCTAAGTGTTGATACCCCGAATCATTGGTGGTTGCTAAGTGCTGAATCCACCG
1 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCG
76429123 ATAAAGGACA
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 123 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (75 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCGTAT
CTTAAATGTG
Found at i:76433209 original size:24 final size:22
Alignment explanation
Indices: 76433173--76433235 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 22
76433163 GATCGGATGA
*
76433173 AATAAAAAGAATAATAACAGTAGT
1 AATAAAAAGAATAATAAC--TAAT
*
76433197 AATGAAAAGAAT-ATAACTAAT
1 AATAAAAAGAATAATAACTAAT
76433218 AATAAAAAGAATAGATAA
1 AATAAAAAGAATA-ATAA
76433236 TAACCAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 14 0.41
23 9 0.26
24 11 0.32
ACGTcount: A:0.65, C:0.03, G:0.11, T:0.21
Consensus pattern (22 bp):
AATAAAAAGAATAATAACTAAT
Found at i:76441724 original size:21 final size:22
Alignment explanation
Indices: 76441678--76441724 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
76441668 GAACTATTTC
* *
76441678 ATCAGTATCATCACCAGTGATT
1 ATCAGTATCATCAACAGTGATA
76441700 ATCA-TATCATCAACA-TAGATA
1 ATCAGTATCATCAACAGT-GATA
76441721 ATCA
1 ATCA
76441725 AGCATGTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 1 0.05
21 17 0.77
22 4 0.18
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCAGTATCATCAACAGTGATA
Found at i:76442634 original size:62 final size:63
Alignment explanation
Indices: 76442510--76442636 Score: 247
Period size: 62 Copynumber: 2.0 Consensus size: 63
76442500 TACATGAATA
76442510 ACTTCATCAGTGGGAGTATCAACAGAGTCGGGGGTACTTACCTCTTGGATATCCAGTGGGGTC
1 ACTTCATCAGTGGGAGTATCAACAGAGTCGGGGGTACTTACCTCTTGGATATCCAGTGGGGTC
76442573 ACTTCATCAGTGGGAGTATCAACAGAGTC-GGGGTACTTACCTCTTGGATATCCAGTGGGGTC
1 ACTTCATCAGTGGGAGTATCAACAGAGTCGGGGGTACTTACCTCTTGGATATCCAGTGGGGTC
76442635 AC
1 AC
76442637 CTCAGCAGGC
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
62 35 0.55
63 29 0.45
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (63 bp):
ACTTCATCAGTGGGAGTATCAACAGAGTCGGGGGTACTTACCTCTTGGATATCCAGTGGGGTC
Found at i:76445615 original size:17 final size:18
Alignment explanation
Indices: 76445576--76445616 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
76445566 CTAAATCTAC
*
76445576 AATTCTGTTGTAAACAGG
1 AATTCTGTTATAAACAGG
*
76445594 AATTCTGTTATGAACA-G
1 AATTCTGTTATAAACAGG
76445611 AATTCT
1 AATTCT
76445617 TATCTCAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
AATTCTGTTATAAACAGG
Found at i:76447400 original size:21 final size:20
Alignment explanation
Indices: 76447359--76447428 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
76447349 AGGCTCGTCC
76447359 ATATTATTTTTTAAAATATAT
1 ATATTA-TTTTTAAAATATAT
**
76447380 ATATTATTTTTAATTTA-AT
1 ATATTATTTTTAAAATATAT
* *
76447399 ATTTTTATTTATTAAAATTTTAT
1 A-TATTATTT-TTAAAA-TATAT
76447422 ATATTAT
1 ATATTAT
76447429 CATCTTAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
19 3 0.08
20 16 0.42
21 10 0.26
22 6 0.16
23 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATATTATTTTTAAAATATAT
Found at i:76448951 original size:20 final size:21
Alignment explanation
Indices: 76448922--76448971 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
76448912 AATAATCAAG
* *
76448922 GTATCGATAT-TTTAAGGCAT
1 GTATCAATATCTTTAAAGCAT
76448942 GTATCAATATCTTTAAAGCAT
1 GTATCAATATCTTTAAAGCAT
76448963 GTATCAATA
1 GTATCAATA
76448972 CCTAATGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (21 bp):
GTATCAATATCTTTAAAGCAT
Found at i:76455545 original size:19 final size:19
Alignment explanation
Indices: 76455517--76455554 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
76455507 ATTGATAGAT
76455517 TTTAAACTTAAGAGTGAAA
1 TTTAAACTTAAGAGTGAAA
*
76455536 TTTAAGCTTAAGAGTGAAA
1 TTTAAACTTAAGAGTGAAA
76455555 AAGGACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (19 bp):
TTTAAACTTAAGAGTGAAA
Found at i:76460269 original size:19 final size:19
Alignment explanation
Indices: 76460241--76460278 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
76460231 ATTGATAGAT
76460241 TTTAAACTTAAGAGTGAAA
1 TTTAAACTTAAGAGTGAAA
*
76460260 TTTAAGCTTAAGAGTGAAA
1 TTTAAACTTAAGAGTGAAA
76460279 AAGGACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (19 bp):
TTTAAACTTAAGAGTGAAA
Found at i:76462676 original size:14 final size:15
Alignment explanation
Indices: 76462652--76462680 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
76462642 CCAATTTAAG
76462652 TTTTTATGAATTTTT
1 TTTTTATGAATTTTT
76462667 TTTTTA-GAATTTTT
1 TTTTTATGAATTTTT
76462681 ATAAGCTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTATGAATTTTT
Found at i:76462708 original size:9 final size:9
Alignment explanation
Indices: 76462694--76462904 Score: 64
Period size: 9 Copynumber: 22.7 Consensus size: 9
76462684 AGCTTATATC
76462694 AATTTTAAT
1 AATTTTAAT
76462703 AATTTTAATT
1 AATTTTAA-T
*
76462713 ATTTTTAATT
1 AATTTTAA-T
*
76462723 ATTTTTAATT
1 AATTTTAA-T
* *
76462733 ATTTTTTAAG
1 A-ATTTTAAT
76462743 AATTTTAAT
1 AATTTTAAT
*
76462752 -ATGTTT-TT
1 AAT-TTTAAT
* *
76462760 ACTTTAAAT
1 AATTTTAAT
76462769 -ATTTTAAAT
1 AATTTT-AAT
*
76462778 AAGTTTTATT
1 AA-TTTTAAT
76462788 AATTTT-AT
1 AATTTTAAT
*
76462796 AATTTT-TT
1 AATTTTAAT
* *
76462804 ACAATTTATT
1 A-ATTTTAAT
*
76462814 AGA-TTTATT
1 A-ATTTTAAT
76462823 ATATTGTTAAT
1 A-ATT-TTAAT
76462834 AATATTT-AT
1 AAT-TTTAAT
*
76462843 AAGTTTTCAT
1 AA-TTTTAAT
76462853 AATTTCT-AT
1 AATTT-TAAT
*
76462862 AAGTTTATAT
1 AATTTTA-AT
76462872 CAATTTTAAT
1 -AATTTTAAT
*
76462882 -ATTTT-TT
1 AATTTTAAT
76462889 AATTTTCAAT
1 AATTTT-AAT
76462899 AATTTT
1 AATTTT
76462905 TTTAATTTTT
Statistics
Matches: 159, Mismatches: 21, Indels: 43
0.71 0.09 0.19
Matches are distributed among these distances:
7 1 0.01
8 28 0.18
9 54 0.34
10 53 0.33
11 23 0.14
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (9 bp):
AATTTTAAT
Done.