Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 248 of 313
Found at i:76462730 original size:20 final size:19
Alignment explanation
Indices: 76462696--76462801 Score: 80
Period size: 20 Copynumber: 5.7 Consensus size: 19
76462686 CTTATATCAA
76462696 TTTTAATAATTTTAATTAT
1 TTTTAATAATTTTAATTAT
*
76462715 TTTTAATTATTTTTAATTATT
1 TTTTAA-TAATTTTAATTA-T
*
76462736 TTTTAAGAATTTTAA-TAT
1 TTTTAATAATTTTAATTAT
* *
76462754 GTTTT--T-ACTTTAAATAT
1 -TTTTAATAATTTTAATTAT
* *
76462771 TTTAAATAAGTTTT-ATTAA
1 TTTTAATAA-TTTTAATTAT
76462790 TTTT-ATAATTTT
1 TTTTAATAATTTT
76462802 TTACAATTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
16 9 0.13
17 7 0.10
18 6 0.09
19 19 0.28
20 21 0.30
21 7 0.10
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (19 bp):
TTTTAATAATTTTAATTAT
Found at i:76462758 original size:10 final size:10
Alignment explanation
Indices: 76462696--76462738 Score: 70
Period size: 10 Copynumber: 4.4 Consensus size: 10
76462686 CTTATATCAA
*
76462696 TTTTAA-TAA
1 TTTTAATTAT
76462705 TTTTAATTAT
1 TTTTAATTAT
76462715 TTTTAATTAT
1 TTTTAATTAT
76462725 TTTTAATTAT
1 TTTTAATTAT
76462735 TTTT
1 TTTT
76462739 TAAGAATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 6 0.19
10 26 0.81
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTAATTAT
Found at i:76462900 original size:65 final size:62
Alignment explanation
Indices: 76462694--76462904 Score: 158
Period size: 65 Copynumber: 3.2 Consensus size: 62
76462684 AGCTTATATC
* * * * * * *
76462694 AATTTTAATAATTTTAATTATTTTTAATTATTTTTAATTATTTTTTAAGAATTTTAATATGTTTT
1 AATTTTAATAATTTTAATAAGTTTT-ATTAATTTT-ATAAGTTTAT-ACAATTTTAATAT-TTTT
76462759 T
62 T
* * * * * * *
76462760 ACTTTAAAT-ATTTTAAATAAGTTTTATTAATTTTATAATTTTTTACAATTTATTAGATTTATT
1 AATTTTAATAATTTT-AATAAGTTTTATTAATTTTATAAGTTTATACAATTT-TAATATTTTTT
76462823 ATATTGTTAATAATATTT-ATAAGTTTTCA-TAATTTCTATAAGTTTATATCAATTTTAATATTT
1 A-ATT-TTAATAAT-TTTAATAAGTTTT-ATTAATTT-TATAAGTTTATA-CAATTTTAATATTT
76462886 TTT
60 TTT
76462889 AATTTTCAATAATTTT
1 AATTTT-AATAATTTT
76462905 TTTAATTTTT
Statistics
Matches: 118, Mismatches: 17, Indels: 22
0.75 0.11 0.14
Matches are distributed among these distances:
63 11 0.09
64 20 0.17
65 41 0.35
66 37 0.31
67 9 0.08
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (62 bp):
AATTTTAATAATTTTAATAAGTTTTATTAATTTTATAAGTTTATACAATTTTAATATTTTTT
Found at i:76462923 original size:20 final size:18
Alignment explanation
Indices: 76462875--76462924 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
76462865 TTTATATCAA
76462875 TTTTAATA-TTTTTTAAT
1 TTTTAATATTTTTTTAAT
*
76462892 TTTCAATAATTTTTTTAATT
1 TTTTAAT-ATTTTTTTAA-T
76462912 TTTTAATCATTTT
1 TTTTAAT-ATTTT
76462925 ATAGGAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 6 0.22
18 1 0.04
19 8 0.30
20 12 0.44
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTAATATTTTTTTAAT
Found at i:76466996 original size:25 final size:25
Alignment explanation
Indices: 76466963--76467013 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 25
76466953 TAAATTATAG
76466963 TTTCATCC-TCAAAGTCTTTTTATTTT
1 TTTCATCCTTCAAAG--TTTTTATTTT
76466989 TTTC-TCCTTCAAAGTTTTTATTTT
1 TTTCATCCTTCAAAGTTTTTATTTT
76467013 T
1 T
76467014 ATTTTGACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 11 0.46
25 3 0.12
26 10 0.42
ACGTcount: A:0.18, C:0.18, G:0.04, T:0.61
Consensus pattern (25 bp):
TTTCATCCTTCAAAGTTTTTATTTT
Found at i:76468063 original size:11 final size:10
Alignment explanation
Indices: 76468035--76468089 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
76468025 AATTAAAATG
76468035 TTAAAATAAA
1 TTAAAATAAA
*
76468045 TTTAAATAAA
1 TTAAAATAAA
76468055 TTAACAAT--A
1 TTAA-AATAAA
* *
76468064 TTGAAATAAG
1 TTAAAATAAA
*
76468074 TTGAAATAAA
1 TTAAAATAAA
76468084 TTAAAA
1 TTAAAA
76468090 ATGTGAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
8 3 0.08
9 4 0.11
10 26 0.72
11 3 0.08
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (10 bp):
TTAAAATAAA
Found at i:76468099 original size:29 final size:29
Alignment explanation
Indices: 76468025--76468100 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
76468015 ATAATATATG
* *
76468025 AATT-AAAATGTTAAAATAAATTTAAATA
1 AATTAAAAATGTGAAAATAAATTGAAATA
*
76468053 AATTAACAATAT-TG-AAATAAGTTGAAATA
1 AATTAA-AA-ATGTGAAAATAAATTGAAATA
76468082 AATTAAAAATGTGAAAATA
1 AATTAAAAATGTGAAAATA
76468101 TTTGAAAGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
27 2 0.05
28 8 0.20
29 25 0.62
30 3 0.08
31 2 0.05
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (29 bp):
AATTAAAAATGTGAAAATAAATTGAAATA
Found at i:76468540 original size:14 final size:14
Alignment explanation
Indices: 76468509--76468549 Score: 55
Period size: 14 Copynumber: 2.8 Consensus size: 14
76468499 GTTAAATTTT
*
76468509 AAAATAAATATATCAA
1 AAAATAAA-A-ATAAA
76468525 AAAATAAAAATAAA
1 AAAATAAAAATAAA
76468539 AAAATAAAAAT
1 AAAATAAAAAT
76468550 GTAAACAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 15 0.62
15 1 0.04
16 8 0.33
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (14 bp):
AAAATAAAAATAAA
Found at i:76470070 original size:23 final size:23
Alignment explanation
Indices: 76470043--76470093 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
76470033 GAAGATTTTG
76470043 GCATATTCCCTGAAGCGAATATT
1 GCATATTCCCTGAAGCGAATATT
*
76470066 GCATA-TCCCTGAAGTGAATATT
1 GCATATTCCCTGAAGCGAATATT
*
76470088 ACATAT
1 GCATAT
76470094 AATTATTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (23 bp):
GCATATTCCCTGAAGCGAATATT
Found at i:76473652 original size:31 final size:31
Alignment explanation
Indices: 76473617--76473680 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
76473607 AAGTTCACTC
76473617 AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
1 AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
76473648 AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
1 AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
76473679 AA
1 AA
76473681 GCACTCACTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (31 bp):
AAATCACTCAAAGTGTTTGAGGTTCAAGAAT
Found at i:76476701 original size:6 final size:6
Alignment explanation
Indices: 76476693--76476772 Score: 72
Period size: 6 Copynumber: 12.5 Consensus size: 6
76476683 GAAAGAAAAT
* * *
76476693 AATAAT AATAATA AATAGAA AATAGAA AATAACA AACAAA AATAAT AAT-AA
1 AATAAA AATAA-A AATA-AA AATA-AA AATAA-A AATAAA AATAAA AATAAA
76476744 AATAAA AATAAA AATAAA GAACTAAA AAT
1 AATAAA AATAAA AATAAA -AA-TAAA AAT
76476773 GGGAAAATAG
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
5 4 0.06
6 29 0.46
7 25 0.40
8 5 0.08
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:76476747 original size:11 final size:11
Alignment explanation
Indices: 76476688--76476761 Score: 51
Period size: 11 Copynumber: 6.2 Consensus size: 11
76476678 GAAATGAAAG
76476688 AAAATAATAATA
1 AAAATAA-AATA
*
76476700 ATAAT-AAATA
1 AAAATAAAATA
76476710 GAAAATAGAAAATA
1 -AAAAT--AAAATA
*
76476724 ACAAACAAAAATA
1 A-AAA-TAAAATA
*
76476737 ATAATAAAATA
1 AAAATAAAATA
76476748 AAAATAAAAATA
1 AAAAT-AAAATA
76476760 AA
1 AA
76476762 GAACTAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
10 4 0.08
11 15 0.31
12 14 0.29
13 8 0.16
14 8 0.16
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:76476769 original size:20 final size:19
Alignment explanation
Indices: 76476693--76476772 Score: 69
Period size: 20 Copynumber: 4.2 Consensus size: 19
76476683 GAAAGAAAAT
*
76476693 AATAATAATAATAAA-TAGAA
1 AATAAAAATAA-AAACTA-AA
76476713 AATAGAAAATAACAAAC-AAA
1 AATA-AAAATAA-AAACTAAA
*
76476733 AATAATAAT-AAAA-TAAA
1 AATAAAAATAAAAACTAAA
76476750 AATAAAAATAAAGAACTAAA
1 AATAAAAATAAA-AACTAAA
76476770 AAT
1 AAT
76476773 GGGAAAATAG
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
17 14 0.28
18 3 0.06
19 6 0.12
20 17 0.34
21 10 0.20
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (19 bp):
AATAAAAATAAAAACTAAA
Found at i:76487336 original size:31 final size:30
Alignment explanation
Indices: 76487308--76487384 Score: 88
Period size: 30 Copynumber: 2.6 Consensus size: 30
76487298 TCAAAATTCA
*
76487308 AAAAGTATAGGGATTAAAATTGA-CAAATTT
1 AAAAGTATAGAGATTAAAATTGATCAAA-TT
* *
76487338 GAAAAG-ATAGAAACTAAAATTGATCAAATT
1 -AAAAGTATAGAGATTAAAATTGATCAAATT
76487368 AAAA-TATAGAGATTAAA
1 AAAAGTATAGAGATTAAA
76487385 TCCATAACTC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
29 14 0.36
30 16 0.41
31 9 0.23
ACGTcount: A:0.56, C:0.04, G:0.14, T:0.26
Consensus pattern (30 bp):
AAAAGTATAGAGATTAAAATTGATCAAATT
Found at i:76488875 original size:18 final size:18
Alignment explanation
Indices: 76488853--76488893 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
76488843 AGTAAAATAT
*
76488853 TTTTTGGAAAATGATTTAC
1 TTTTCGGAAAATG-TTTAC
*
76488872 TTTTCTGAAAATGTTTAC
1 TTTTCGGAAAATGTTTAC
76488890 TTTT
1 TTTT
76488894 TTGGTGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (18 bp):
TTTTCGGAAAATGTTTAC
Found at i:76495212 original size:15 final size:15
Alignment explanation
Indices: 76495164--76495220 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
76495154 CGAAAAGAAA
76495164 ATTTATATTTTCCATC
1 ATTTAT-TTTTCCATC
*
76495180 ATTTTACTTTTT--ACC
1 A-TTTA-TTTTTCCATC
76495195 ATTTATTTTTCCATC
1 ATTTATTTTTCCATC
76495210 ATTTCATTTTT
1 ATTT-ATTTTT
76495221 TTCACTCTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
13 5 0.15
14 4 0.12
15 9 0.26
16 7 0.21
17 8 0.24
18 1 0.03
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTATTTTTCCATC
Found at i:76495222 original size:31 final size:31
Alignment explanation
Indices: 76495164--76495221 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
76495154 CGAAAAGAAA
*
76495164 ATTTATATTTTCCATCATTTTACTTTTTACC
1 ATTTATATTTTCCATCATTTCACTTTTTACC
*
76495195 ATTTAT-TTTTCCATCATTTCATTTTTT
1 ATTTATATTTTCCATCATTTCACTTTTT
76495222 TCACTCTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.21, C:0.17, G:0.00, T:0.62
Consensus pattern (31 bp):
ATTTATATTTTCCATCATTTCACTTTTTACC
Found at i:76499524 original size:20 final size:20
Alignment explanation
Indices: 76499458--76499534 Score: 74
Period size: 21 Copynumber: 3.9 Consensus size: 20
76499448 TAAAAAATGA
76499458 TTTTATTATTAGGGTTTTAGG
1 TTTTATTATTAGGGTTTT-GG
76499479 TGTGTTA--ATTAGGGTTTTGG
1 T-T-TTATTATTAGGGTTTTGG
76499499 -TTTATT-TTAGGGTTTTGG
1 TTTTATTATTAGGGTTTTGG
*
76499517 ATTTTATTGTTA-GGTTTT
1 -TTTTATTATTAGGGTTTT
76499535 TAGTGTTTAA
Statistics
Matches: 49, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
17 3 0.06
18 13 0.27
20 14 0.29
21 15 0.31
22 1 0.02
23 3 0.06
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (20 bp):
TTTTATTATTAGGGTTTTGG
Found at i:76499543 original size:21 final size:21
Alignment explanation
Indices: 76499459--76499543 Score: 65
Period size: 21 Copynumber: 4.2 Consensus size: 21
76499449 AAAAAATGAT
*
76499459 TTTATTATTAGGGTTTTAGGTG
1 TTTATT-TTAGGGTTTTAGATG
*
76499481 TGTTA-ATTAGGGTTTT-G--G
1 T-TTATTTTAGGGTTTTAGATG
*
76499499 TTTATTTTAGGGTTTTGGAT-
1 TTTATTTTAGGGTTTTAGATG
*
76499519 TTTATTGTTAGGTTTTTAG-TG
1 TTTATT-TTAGGGTTTTAGATG
76499540 TTTA
1 TTTA
76499544 AGGGTTCCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
17 3 0.06
18 12 0.23
19 1 0.02
20 8 0.15
21 24 0.46
22 1 0.02
23 3 0.06
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (21 bp):
TTTATTTTAGGGTTTTAGATG
Found at i:76500995 original size:16 final size:16
Alignment explanation
Indices: 76500974--76501008 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
76500964 ACTACATAAG
76500974 CATGAACATAACTTAC
1 CATGAACATAACTTAC
76500990 CATGAACATAACTTAC
1 CATGAACATAACTTAC
76501006 CAT
1 CAT
76501009 TTCAACGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.26, G:0.06, T:0.26
Consensus pattern (16 bp):
CATGAACATAACTTAC
Found at i:76521009 original size:29 final size:29
Alignment explanation
Indices: 76520964--76521022 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
76520954 TCATTCTATC
*
76520964 TTTCCCTATTATACTAAATAGTTCAAGTT
1 TTTCCCTATTATACTAAATAGATCAAGTT
*
76520993 TTTCCCTATTATTCTAAATAGATCAAGTT
1 TTTCCCTATTATACTAAATAGATCAAGTT
76521022 T
1 T
76521023 CTTATATATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.46
Consensus pattern (29 bp):
TTTCCCTATTATACTAAATAGATCAAGTT
Found at i:76523037 original size:21 final size:23
Alignment explanation
Indices: 76523013--76523056 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
76523003 AATAAAAAAT
76523013 ATAAATTTT-TTAATT-TTTTTA
1 ATAAATTTTGTTAATTATTTTTA
*
76523034 ATAAATTTTGTTTATTATTTTTA
1 ATAAATTTTGTTAATTATTTTTA
76523057 TTATTTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 5 0.25
23 6 0.30
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
ATAAATTTTGTTAATTATTTTTA
Found at i:76536758 original size:164 final size:164
Alignment explanation
Indices: 76536475--76536836 Score: 634
Period size: 164 Copynumber: 2.2 Consensus size: 164
76536465 AGAGTGAAAC
* *
76536475 AAATCTGAAGGAGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
1 AAATCTAAAGGGGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
*
76536540 AGAAGAAAACTTGAAGAACCCATTAACTTACCAACAAAGAAATTAGAAAGTACAGTTCGAAAGCT
66 AGAAGAAAACTTGAAGAACCCATTAACTTACCAACAAAGAAATCAGAAAGTACAGTTCGAAAGCT
* *
76536605 TGAAGAGGCTGCAGCTAAGGCTTCAGCAACAAGG
131 TGAAGAAGCTGCAACTAAGGCTTCAGCAACAAGG
* *
76536639 AAATTTAAAGGGGATTAACTTACCAATAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
1 AAATCTAAAGGGGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
* *
76536704 AGAATAAAACTTGAAGAACCCATTAACTTACCAACAAGGAAATCAGAAAGTACAGTTCGAAAGCT
66 AGAAGAAAACTTGAAGAACCCATTAACTTACCAACAAAGAAATCAGAAAGTACAGTTCGAAAGCT
76536769 TGAAGAAGCTGCAACTAAGGCTTCAGCAACAAGG
131 TGAAGAAGCTGCAACTAAGGCTTCAGCAACAAGG
*
76536803 AAATCTGAAGGGGATTAACTTACCAACAAGGAAA
1 AAATCTAAAGGGGATTAACTTACCAACAAGGAAA
76536837 TCGGCAGAGG
Statistics
Matches: 186, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
164 186 1.00
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.20
Consensus pattern (164 bp):
AAATCTAAAGGGGATTAACTTACCAACAAGGAAAAACTACTCAGTTATGCCAATAATATCATAAA
AGAAGAAAACTTGAAGAACCCATTAACTTACCAACAAAGAAATCAGAAAGTACAGTTCGAAAGCT
TGAAGAAGCTGCAACTAAGGCTTCAGCAACAAGG
Found at i:76545209 original size:2 final size:2
Alignment explanation
Indices: 76545202--76545249 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
76545192 GAGACAGCTT
76545202 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
76545244 CA CA CA
1 CA CA CA
76545250 AATGTAGCAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:76552563 original size:22 final size:22
Alignment explanation
Indices: 76552533--76552579 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
76552523 ATAACATAGG
**
76552533 TTTTATAAATG-TCAGAAAATT
1 TTTTATAAATGAAAAGAAAATT
76552554 TTTTAATAAATGAAAAGAAAATT
1 TTTT-ATAAATGAAAAGAAAATT
76552577 TTT
1 TTT
76552580 GAACTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 7 0.32
23 11 0.50
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.43
Consensus pattern (22 bp):
TTTTATAAATGAAAAGAAAATT
Found at i:76561260 original size:59 final size:61
Alignment explanation
Indices: 76561145--76561262 Score: 186
Period size: 62 Copynumber: 2.0 Consensus size: 61
76561135 AGGACCTTCC
*
76561145 CCCTATAAATACCCCAAGGCACGATGATAACAGGCTCTTCTTCTTCTTTAAGCTACCCTGGG
1 CCCTATAAATACCCCAAGGCACGATGATAACAGGATCTTCTTC-TCTTTAAGCTACCCTGGG
* *
76561207 CCCTATAAATACCCTAAGGCATGATGATAACAGGATCTTC-TC-CTTTAAGCTACCCT
1 CCCTATAAATACCCCAAGGCACGATGATAACAGGATCTTCTTCTCTTTAAGCTACCCT
76561263 AGGCATTATA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
59 14 0.26
61 2 0.04
62 37 0.70
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (61 bp):
CCCTATAAATACCCCAAGGCACGATGATAACAGGATCTTCTTCTCTTTAAGCTACCCTGGG
Found at i:76564154 original size:17 final size:18
Alignment explanation
Indices: 76564132--76564168 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
76564122 TCAAAGTTTG
76564132 GAAAAGAAAAAGGAA-AA
1 GAAAAGAAAAAGGAAGAA
*
76564149 GAAAAGAAGAAGGAAGAA
1 GAAAAGAAAAAGGAAGAA
76564167 GA
1 GA
76564169 CAAACTCCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (18 bp):
GAAAAGAAAAAGGAAGAA
Found at i:76574266 original size:20 final size:20
Alignment explanation
Indices: 76574243--76574297 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
76574233 GATACCAACT
* *
76574243 TAAAAATATTGATACTATTA
1 TAAAAATATCGATACTAGTA
*
76574263 TAAAAATATCGATACTAGTG
1 TAAAAATATCGATACTAGTA
76574283 TAAAAATATCGATAC
1 TAAAAATATCGATAC
76574298 CAGAGGTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (20 bp):
TAAAAATATCGATACTAGTA
Found at i:76578197 original size:30 final size:31
Alignment explanation
Indices: 76578139--76578197 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
76578129 ATGTAATATC
*
76578139 ATATACAAACTTTGATTTTGTTCGATTTTAA
1 ATATACAAACTTTGATTTTGTTCAATTTTAA
*
76578170 ATATA-AAATTTTGA-TTTGATTCAATTTT
1 ATATACAAACTTTGATTTTG-TTCAATTTT
76578198 CACAAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 4 0.16
30 16 0.64
31 5 0.20
ACGTcount: A:0.34, C:0.07, G:0.08, T:0.51
Consensus pattern (31 bp):
ATATACAAACTTTGATTTTGTTCAATTTTAA
Found at i:76580137 original size:24 final size:24
Alignment explanation
Indices: 76580110--76580161 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
76580100 TTAGTAAGTC
*
76580110 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
76580134 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
76580158 AAAT
1 AAAT
76580162 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:76586650 original size:24 final size:24
Alignment explanation
Indices: 76586563--76586650 Score: 72
Period size: 24 Copynumber: 3.6 Consensus size: 24
76586553 ACACACCATA
76586563 GCTCTTATGAGCTTCCTGATATATG
1 GCTCTTATGAGCTTCCTGAT-TATG
*** *
76586588 GCTCTCCGGAGCTTCCCGA-TATTG
1 GCTCTTATGAGCTTCCTGATTA-TG
* * *
76586612 GCTCGCT-TGAACTTCCTAATTATG
1 GCTC-TTATGAGCTTCCTGATTATG
76586636 GCTCTTATGAGCTTC
1 GCTCTTATGAGCTTC
76586651 TCATTATACA
Statistics
Matches: 47, Mismatches: 12, Indels: 9
0.69 0.18 0.13
Matches are distributed among these distances:
23 3 0.06
24 27 0.57
25 17 0.36
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.36
Consensus pattern (24 bp):
GCTCTTATGAGCTTCCTGATTATG
Found at i:76587850 original size:34 final size:34
Alignment explanation
Indices: 76587811--76587888 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
76587801 TTTTTTTGAG
* * * * *
76587811 AACACGGAAATTTTTGAAATACGAGAATTTTAGA
1 AACACGAAAATTTCTAAAACACGAAAATTTTAGA
*
76587845 AACACGAAAATTTCTAAAACACGAAAATTTTTGA
1 AACACGAAAATTTCTAAAACACGAAAATTTTAGA
76587879 AA-ACGCAAAA
1 AACACG-AAAA
76587889 AGTCGAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
33 3 0.08
34 34 0.92
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.24
Consensus pattern (34 bp):
AACACGAAAATTTCTAAAACACGAAAATTTTAGA
Found at i:76587888 original size:17 final size:17
Alignment explanation
Indices: 76587803--76587880 Score: 93
Period size: 17 Copynumber: 4.5 Consensus size: 17
76587793 GATAATAATT
*
76587803 TTTTTGAGAACACGGAAA
1 TTTTTGA-AACACGAAAA
* *
76587821 TTTTTGAAATACGAGAA
1 TTTTTGAAACACGAAAA
*
76587838 TTTTAGAAACACGAAAA
1 TTTTTGAAACACGAAAA
* *
76587855 TTTCTAAAACACGAAAA
1 TTTTTGAAACACGAAAA
76587872 TTTTTGAAA
1 TTTTTGAAA
76587881 ACGCAAAAAG
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
17 42 0.86
18 7 0.14
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (17 bp):
TTTTTGAAACACGAAAA
Found at i:76587920 original size:19 final size:19
Alignment explanation
Indices: 76587893--76588055 Score: 87
Period size: 19 Copynumber: 8.0 Consensus size: 19
76587883 GCAAAAAGTC
* * *
76587893 GAAAATTTTTAAAATAGGA
1 GAAATTTTTTAAAACACGA
*
76587912 GAAATTTTTGAAAACACGA
1 GAAATTTTTTAAAACACGA
*
76587931 -AAATTTTTTAAAACGCGAAAA
1 GAAATTTTTTAAAACACG---A
*
76587952 GTCGAAAATTTTTAAAACACGA
1 ---GAAATTTTTTAAAACACGA
* *
76587974 GAAAATTTTGAAAACACGA
1 GAAATTTTTTAAAACACGA
* *
76587993 -AAATTTTTGAAAACGCGAAAA
1 GAAATTTTTTAAAACACG---A
*
76588014 GGCCAAAATTTTTTGAAACACGA
1 -G---AAATTTTTTAAAACACGA
*
76588037 GAAATTTTTGAAAACACGA
1 GAAATTTTTTAAAACACGA
76588056 AAGTTTGAAA
Statistics
Matches: 113, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
18 30 0.27
19 49 0.43
21 2 0.02
22 2 0.02
23 1 0.01
25 15 0.13
26 14 0.12
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.26
Consensus pattern (19 bp):
GAAATTTTTTAAAACACGA
Found at i:76587932 original size:62 final size:62
Alignment explanation
Indices: 76587838--76588057 Score: 327
Period size: 62 Copynumber: 3.5 Consensus size: 62
76587828 AATACGAGAA
* *
76587838 TTTTAGAAACACGA-AAATTTCT-AAAACACGAAAATTTTTGAAAACGCAAAAAGTCGAAAAT
1 TTTTA-AAACACGAGAAATTTTTGAAAACACGAAAATTTTTGAAAACGCGAAAAGTCGAAAAT
* * *
76587899 TTTTAAAATAGGAGAAATTTTTGAAAACACGAAAATTTTTTAAAACGCGAAAAGTCGAAAAT
1 TTTTAAAACACGAGAAATTTTTGAAAACACGAAAATTTTTGAAAACGCGAAAAGTCGAAAAT
* * *
76587961 TTTTAAAACACGAGAAAATTTTGAAAACACGAAAATTTTTGAAAACGCGAAAAGGCCAAAATT
1 TTTTAAAACACGAGAAATTTTTGAAAACACGAAAATTTTTGAAAACGCGAAAAGTCGAAAA-T
*
76588024 TTTTGAAACACGAGAAATTTTTGAAAACACGAAA
1 TTTTAAAACACGAGAAATTTTTGAAAACACGAAA
76588058 GTTTGAAACA
Statistics
Matches: 143, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
60 6 0.04
61 12 0.08
62 92 0.64
63 33 0.23
ACGTcount: A:0.49, C:0.11, G:0.14, T:0.26
Consensus pattern (62 bp):
TTTTAAAACACGAGAAATTTTTGAAAACACGAAAATTTTTGAAAACGCGAAAAGTCGAAAAT
Found at i:76587951 original size:26 final size:25
Alignment explanation
Indices: 76587921--76587969 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
76587911 AGAAATTTTT
76587921 GAAAACACGAAAATTTTTTAAAACGC
1 GAAAACACGAAAA-TTTTTAAAACGC
**
76587947 GAAAAGTCGAAAATTTTTAAAAC
1 GAAAACACGAAAATTTTTAAAAC
76587970 ACGAGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.24
Consensus pattern (25 bp):
GAAAACACGAAAATTTTTAAAACGC
Found at i:76588000 original size:18 final size:18
Alignment explanation
Indices: 76587803--76588013 Score: 126
Period size: 18 Copynumber: 11.0 Consensus size: 18
76587793 GATAATAATT
* *
76587803 TTTTTGAGAACACGGAAA
1 TTTTTGAAAACACGAAAA
* *
76587821 TTTTTG-AAATACGAGAA
1 TTTTTGAAAACACGAAAA
*
76587838 TTTTAG-AAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
76587855 TTTCT-AAAACACGAAAA
1 TTTTTGAAAACACGAAAA
76587872 TTTTTGAAAACGCAAAAAGTCGAAAA
1 TTTTTGAAAA--C----A--CGAAAA
* *
76587898 TTTTT-AAAATAGGAGAAA
1 TTTTTGAAAACACGA-AAA
76587916 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
76587934 TTTTTTAAAACGCGAAAAGTCGAAAA
1 TTTTTGAAAA--C----A--CGAAAA
76587960 TTTTT-AAAACACGAGAAA
1 TTTTTGAAAACACGA-AAA
*
76587978 ATTTTGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
76587996 TTTTTGAAAACGCGAAAA
1 TTTTTGAAAACACGAAAA
76588014 GGCCAAAATT
Statistics
Matches: 153, Mismatches: 18, Indels: 44
0.71 0.08 0.20
Matches are distributed among these distances:
17 44 0.29
18 56 0.37
19 18 0.12
20 2 0.01
23 1 0.01
24 2 0.01
25 8 0.05
26 22 0.14
ACGTcount: A:0.48, C:0.10, G:0.14, T:0.27
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:76588057 original size:17 final size:16
Alignment explanation
Indices: 76588023--76588072 Score: 57
Period size: 15 Copynumber: 3.0 Consensus size: 16
76588013 AGGCCAAAAT
76588023 TTTTTGAAACACGAGAAA
1 TTTTTGAAACAC--GAAA
76588041 TTTTTGAAAACACGAAA
1 TTTTTG-AAACACGAAA
*
76588058 -GTTTGAAACACGAAA
1 TTTTTGAAACACGAAA
76588073 ATTATTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 10 0.33
16 4 0.13
17 4 0.13
18 6 0.20
19 6 0.20
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.26
Consensus pattern (16 bp):
TTTTTGAAACACGAAA
Found at i:76588159 original size:18 final size:17
Alignment explanation
Indices: 76588133--76588180 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
76588123 TATTATTATT
76588133 TTTTGAAACACGAGAAA-
1 TTTTGAAACACGA-AAAC
*
76588150 TTTTGAAAACATGAAAAC
1 TTTTG-AAACACGAAAAC
76588168 TTTTGAAACACGA
1 TTTTGAAACACGA
76588181 TTTTTTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (17 bp):
TTTTGAAACACGAAAAC
Found at i:76588959 original size:7 final size:7
Alignment explanation
Indices: 76588942--76589022 Score: 63
Period size: 7 Copynumber: 10.7 Consensus size: 7
76588932 GTTATATATA
76588942 TTTTTTC
1 TTTTTTC
*
76588949 TTTTTCTT
1 TTTTT-TC
76588957 TTTCTTTC
1 TTT-TTTC
*
76588965 CTTTTTC
1 TTTTTTC
76588972 TCTTTTTC
1 T-TTTTTC
*
76588980 TTCTTTC
1 TTTTTTC
*
76588987 TTCTTTC
1 TTTTTTC
76588994 TTTTTTC
1 TTTTTTC
76589001 TTCTTCCTTC
1 TT-TT--TTC
*
76589011 TTATTTC
1 TTTTTTC
76589018 TTTTT
1 TTTTT
76589023 CTCCTTCGGG
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
7 36 0.60
8 16 0.27
9 3 0.05
10 5 0.08
ACGTcount: A:0.01, C:0.22, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTTC
Found at i:76588977 original size:24 final size:23
Alignment explanation
Indices: 76588945--76589029 Score: 93
Period size: 23 Copynumber: 3.7 Consensus size: 23
76588935 ATATATATTT
*
76588945 TTTCTTTTTCTTTTTCTTTCCTT-
1 TTTCTTTTTCTTCTTCTTT-CTTA
* *
76588968 TTTCTCTTT-TTCTTCTTTCTTC
1 TTTCTTTTTCTTCTTCTTTCTTA
*
76588990 TTTCTTTTTTCTTCTTCCTTCTTA
1 TTTC-TTTTTCTTCTTCTTTCTTA
*
76589014 TTTCTTTTTCTCCTTC
1 TTTCTTTTTCTTCTTC
76589030 GGGCTGAACC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.06
22 12 0.23
23 23 0.43
24 15 0.28
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTCTTTTTCTTCTTCTTTCTTA
Found at i:76588985 original size:17 final size:16
Alignment explanation
Indices: 76588942--76589024 Score: 71
Period size: 17 Copynumber: 4.9 Consensus size: 16
76588932 GTTATATATA
76588942 TTTTTTCTTTTTCTT-
1 TTTTTTCTTTTTCTTC
76588957 TTTCTTTCCTTTTTC-TC
1 TTT-TTT-CTTTTTCTTC
76588974 TTTTTCTTCTTTCTTCTTTC
1 -TTTT-TTCTTT-TTC-TTC
*
76588994 TTTTTTCTTCTTCCTTC
1 TTTTTTCTT-TTTCTTC
*
76589011 TTATTTCTTTTTCT
1 TTTTTTCTTTTTCT
76589025 CCTTCGGGCT
Statistics
Matches: 56, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
15 3 0.05
16 8 0.14
17 23 0.41
18 15 0.27
19 5 0.09
20 2 0.04
ACGTcount: A:0.01, C:0.23, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTTCTTTTTCTTC
Found at i:76589000 original size:21 final size:21
Alignment explanation
Indices: 76588946--76589012 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 21
76588936 TATATATTTT
*
76588946 TTCTTT-TTCTTT-TTCTTTCC
1 TTCTTTCTTTTTTCTTCTTT-C
76588966 TT-TTTCTCTTTTTCTTCTTTC
1 TTCTTTCT-TTTTTCTTCTTTC
*
76588987 TTCTTTCTTTTTTCTTCTTCC
1 TTCTTTCTTTTTTCTTCTTTC
76589008 TTCTT
1 TTCTT
76589013 ATTTCTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
19 3 0.07
20 3 0.07
21 24 0.59
22 11 0.27
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (21 bp):
TTCTTTCTTTTTTCTTCTTTC
Found at i:76589855 original size:13 final size:12
Alignment explanation
Indices: 76589837--76589874 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
76589827 TTTTCGAAAT
76589837 TTTAATATTAATA
1 TTTAA-ATTAATA
76589850 TTT-AATTAATA
1 TTTAAATTAATA
76589861 TTTAAAATTAATA
1 TTT-AAATTAATA
76589874 T
1 T
76589875 ATATGTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 10 0.43
12 1 0.04
13 12 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TTTAAATTAATA
Found at i:76592516 original size:17 final size:17
Alignment explanation
Indices: 76592494--76592557 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
76592484 AATCTTAAAG
76592494 TTCTAATTGTATACAGC
1 TTCTAATTGTATACAGC
* *
76592511 TTCTAATTGTGT-CTTAGAG
1 TTCTAATTGTATAC--AG-C
*
76592530 TTTTAATTGTATACAGC
1 TTCTAATTGTATACAGC
*
76592547 TTTTAATTGTA
1 TTCTAATTGTA
76592558 GCCTTTGATG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 1 0.03
17 22 0.58
18 4 0.11
19 10 0.26
20 1 0.03
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (17 bp):
TTCTAATTGTATACAGC
Found at i:76592537 original size:36 final size:36
Alignment explanation
Indices: 76592486--76592556 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
76592476 GATTATGTAA
76592486 TCTTAAAGTTCTAATTGTATACAGCTTCTAATTGTG
1 TCTTAAAGTTCTAATTGTATACAGCTTCTAATTGTG
* * *
76592522 TCTTAGAGTTTTAATTGTATACAGCTTTTAATTGT
1 TCTTAAAGTTCTAATTGTATACAGCTTCTAATTGT
76592557 AGCCTTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (36 bp):
TCTTAAAGTTCTAATTGTATACAGCTTCTAATTGTG
Found at i:76592817 original size:48 final size:48
Alignment explanation
Indices: 76592761--76592854 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
76592751 TAAGGGAATT
*
76592761 CTGTTGAATCCTTTATCATTGCAAGTTAGGCCGACTTAGGCGTTTTTG
1 CTGTTGAATCCTTTATCATTGCAAGTTAGGCCAACTTAGGCGTTTTTG
** *
76592809 CTGTTGAATCCTTTATCATTGTGAGTTAGGCTAACTTAGGCGTTTT
1 CTGTTGAATCCTTTATCATTGCAAGTTAGGCCAACTTAGGCGTTTT
76592855 AAGCAAAGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.41
Consensus pattern (48 bp):
CTGTTGAATCCTTTATCATTGCAAGTTAGGCCAACTTAGGCGTTTTTG
Found at i:76594570 original size:60 final size:59
Alignment explanation
Indices: 76594497--76594615 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 59
76594487 CTGTCAGCAA
* * *
76594497 TTCAGTTTGCTAAAGGTGTGCGGAGAAATGAAGTCTCATATTTATCAACCTTAAAGATC
1 TTCAGTTTGCTAAAGGTGTGCGAAGAAATGAAGTATCATATTTAGCAACCTTAAAGATC
76594556 NTTCAGTTTGCTAAAGGTGTGCGAAGAAATGAAGTATCATATTTAGCAACCTTAAAGATC
1 -TTCAGTTTGCTAAAGGTGTGCGAAGAAATGAAGTATCATATTTAGCAACCTTAAAGATC
76594616 GAAGAGACCG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.31
Consensus pattern (59 bp):
TTCAGTTTGCTAAAGGTGTGCGAAGAAATGAAGTATCATATTTAGCAACCTTAAAGATC
Found at i:76597736 original size:36 final size:36
Alignment explanation
Indices: 76597685--76597755 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
76597675 GATTATGTAA
76597685 TCTTAGAGTTCTAATTGTATACAACTTCTAATTGTG
1 TCTTAGAGTTCTAATTGTATACAACTTCTAATTGTG
* * *
76597721 TCTTAGAGTTTTAATTGTATACAGCTTTTAATTGT
1 TCTTAGAGTTCTAATTGTATACAACTTCTAATTGT
76597756 AGCCTTTGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.48
Consensus pattern (36 bp):
TCTTAGAGTTCTAATTGTATACAACTTCTAATTGTG
Found at i:76598016 original size:48 final size:48
Alignment explanation
Indices: 76597960--76598054 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
76597950 TAAGGGAATT
76597960 CTGTTGAATCCTTTATCATTGCAAGTTAGGCCGACTTAGGCGTTTTTG
1 CTGTTGAATCCTTTATCATTGCAAGTTAGGCCGACTTAGGCGTTTTTG
* *
76598008 CTGTTGAATCCTTTATCATTGCGAGTTAGGCTGACTTAGGCGTTTTT
1 CTGTTGAATCCTTTATCATTGCAAGTTAGGCCGACTTAGGCGTTTTT
76598055 AAGCAAAGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.41
Consensus pattern (48 bp):
CTGTTGAATCCTTTATCATTGCAAGTTAGGCCGACTTAGGCGTTTTTG
Found at i:76599361 original size:34 final size:35
Alignment explanation
Indices: 76599317--76599383 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 35
76599307 CAGTAAAATA
76599317 TTTTCCGTAAAATGATTT-C-GGAAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGG-AAAATATTTTAC
*
76599351 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
76599384 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 17 0.57
35 11 0.37
36 2 0.07
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:76602048 original size:26 final size:26
Alignment explanation
Indices: 76602015--76602076 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
76602005 ATAAAAAATA
76602015 ACCAAAATATTATAATTTTTTTATTT
1 ACCAAAATATTATAATTTTTTTATTT
76602041 ACCAAAATATTATAATTTTTTTATTT
1 ACCAAAATATTATAATTTTTTTATTT
76602067 ACCAAAATAT
1 ACCAAAATAT
76602077 ACCAAAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (26 bp):
ACCAAAATATTATAATTTTTTTATTT
Found at i:76602401 original size:18 final size:18
Alignment explanation
Indices: 76602380--76602432 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
76602370 AGTAATAACT
*
76602380 CTATTTTAATTTAATAAA
1 CTATTCTAATTTAATAAA
*
76602398 CTATTCTCATTTAATAAA
1 CTATTCTAATTTAATAAA
76602416 C---TCTAATTTAATAAA
1 CTATTCTAATTTAATAAA
76602431 CT
1 CT
76602433 CTATTTTGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 14 0.45
18 17 0.55
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (18 bp):
CTATTCTAATTTAATAAA
Found at i:76602426 original size:15 final size:15
Alignment explanation
Indices: 76602386--76602435 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 15
76602376 AACTCTATTT
76602386 TAATTTAATAAACTATTC
1 TAATTTAATAAAC---TC
*
76602404 TCATTTAATAAACTC
1 TAATTTAATAAACTC
76602419 TAATTTAATAAACTC
1 TAATTTAATAAACTC
76602434 TA
1 TA
76602436 TTTTGGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
15 18 0.60
18 12 0.40
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (15 bp):
TAATTTAATAAACTC
Found at i:76602967 original size:16 final size:17
Alignment explanation
Indices: 76602946--76602977 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76602936 GGTGCCGCCA
76602946 CAGGTTTTT-TTTTTTG
1 CAGGTTTTTGTTTTTTG
76602962 CAGGTTTTTGTTTTTT
1 CAGGTTTTTGTTTTTT
76602978 TTTTGCATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.06, C:0.06, G:0.19, T:0.69
Consensus pattern (17 bp):
CAGGTTTTTGTTTTTTG
Found at i:76602990 original size:21 final size:21
Alignment explanation
Indices: 76602951--76602990 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76602941 CGCCACAGGT
*
76602951 TTTTTTTTTTGCAGGTTTTTG
1 TTTTTTTTTTGCAGATTTTTG
*
76602972 TTTTTTTTTTGCATATTTT
1 TTTTTTTTTTGCAGATTTT
76602991 GGTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.07, C:0.05, G:0.12, T:0.75
Consensus pattern (21 bp):
TTTTTTTTTTGCAGATTTTTG
Found at i:76603015 original size:27 final size:27
Alignment explanation
Indices: 76602984--76603047 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
76602974 TTTTTTTTGC
*
76602984 ATATTTTGGTAAATAAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
*
76603011 ATATTTTGATAAATAAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAATTATA
76603038 ATATTTTGGT
1 ATATTTTGGT
76603048 TATTTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAATTATA
Found at i:76604198 original size:76 final size:75
Alignment explanation
Indices: 76604110--76604290 Score: 238
Period size: 75 Copynumber: 2.4 Consensus size: 75
76604100 AAAAAAATTG
* *
76604110 TTCTATTTGTATTTTACATAAATAATATATACTTATTTACAATCTA-AGAAAAAAATTAAGAAAT
1 TTCTA-TTGTATTTTACATCAATAATATATACTTATTTACAATCTACAGAAAAAAA-GAA-AAAT
* *
76604174 TATTTGTATTGTA
63 AATTTATATTGTA
** ** *
76604187 TTCTATTGTATTCCATGTCAATAATATATACTTATTTACAATCTACGGAAAAAAAGAAAAATAAT
1 TTCTATTGTATTTTACATCAATAATATATACTTATTTACAATCTACAGAAAAAAAGAAAAATAAT
76604252 TTATATTGTA
66 TTATATTGTA
*
76604262 TTCTACTGTATTTTACATCAATAATATAT
1 TTCTATTGTATTTTACATCAATAATATAT
76604291 CAATACTTAC
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
75 39 0.44
76 37 0.42
77 13 0.15
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (75 bp):
TTCTATTGTATTTTACATCAATAATATATACTTATTTACAATCTACAGAAAAAAAGAAAAATAAT
TTATATTGTA
Found at i:76604314 original size:75 final size:76
Alignment explanation
Indices: 76604117--76604321 Score: 234
Period size: 75 Copynumber: 2.7 Consensus size: 76
76604107 TTGTTCTATT
* * ** * *
76604117 TGTATTTTACATAAATAATATATACTTATTTACAATCTAAGAAAAAAATTAAGAAATTATTTGTA
1 TGTATTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAAAAGAAGAAATAATTTATA
*
76604182 TTGTATTCTAT
66 TTGTATTCTAC
** ** *
76604193 TGTATTCCATGTCAATAATATATACTTATTTACAATCTACGGAAAAAAAGAA-AAATAATTTATA
1 TGTATTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAAAAGAAGAAATAATTTATA
76604257 TTGTATTCTAC
66 TTGTATTCTAC
* * * *
76604268 TGTATTTTACATCAATAATATAT-CAATACTTACAATTTACCAAAAAATAAGAAG
1 TGTATTTTACATCAATAATATATAC-TTATTTACAATCTACGAAAAAA-AAGAAG
76604322 CAATGAAAAG
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
74 1 0.01
75 56 0.53
76 48 0.46
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (76 bp):
TGTATTTTACATCAATAATATATACTTATTTACAATCTACGAAAAAAAAGAAGAAATAATTTATA
TTGTATTCTAC
Found at i:76608052 original size:16 final size:16
Alignment explanation
Indices: 76608027--76608070 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
76608017 GTTATAATAT
* *
76608027 TATTAATGAATTTTAA
1 TATTATTGAATGTTAA
*
76608043 TATTATTGAATGTTAT
1 TATTATTGAATGTTAA
76608059 TATTATTTGAAT
1 TATTA-TTGAAT
76608071 AAAATAGCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (16 bp):
TATTATTGAATGTTAA
Found at i:76620420 original size:22 final size:22
Alignment explanation
Indices: 76620406--76620482 Score: 109
Period size: 22 Copynumber: 3.5 Consensus size: 22
76620396 ATATGTTCTG
*
76620406 ATATGTTATATGATATACTCCA
1 ATATGTTATATGATATGCTCCA
76620428 ATATGTTATATGATATGCTCCA
1 ATATGTTATATGATATGCTCCA
* * **
76620450 ATATGTTATATTATATTCTCTG
1 ATATGTTATATGATATGCTCCA
76620472 ATATGTTATAT
1 ATATGTTATAT
76620483 AATACAAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.47
Consensus pattern (22 bp):
ATATGTTATATGATATGCTCCA
Found at i:76621360 original size:29 final size:29
Alignment explanation
Indices: 76621317--76621397 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 29
76621307 GAATTACATT
76621317 AAATCAAAATTTTATATATAAATTTATAC-A
1 AAATCAAAA-TTTATATATAAATTTA-ACTA
*
76621347 AAATCAAAATTTATATATAAAATTTAACTTT
1 AAATCAAAATTTATATAT-AAATTTAAC-TA
*
76621378 AAATCAAAATTAATATATAA
1 AAATCAAAATTTATATATAA
76621398 CTTTGAGATT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
29 11 0.24
30 18 0.39
31 17 0.37
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (29 bp):
AAATCAAAATTTATATATAAATTTAACTA
Found at i:76621382 original size:31 final size:31
Alignment explanation
Indices: 76621315--76621397 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
76621305 GAGAATTACA
76621315 TTAAATCAAAATTT-TATATATAAATTTATAC
1 TTAAATCAAAATTTATATATA-AAATTTATAC
*
76621346 -AAAATCAAAATTTATATATAAAATTTA-AC
1 TTAAATCAAAATTTATATATAAAATTTATAC
*
76621375 TTTAAATCAAAATTAATATATAA
1 -TTAAATCAAAATTTATATATAA
76621398 CTTTGAGATT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
29 2 0.04
30 19 0.41
31 25 0.54
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (31 bp):
TTAAATCAAAATTTATATATAAAATTTATAC
Found at i:76621781 original size:30 final size:30
Alignment explanation
Indices: 76621718--76621782 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
76621708 TTCACTAACT
* * *
76621718 ATTTTCTGTTACAGACTTAACGGAGCTGTC
1 ATTTTCTGTTACAGACATAACGAAGCTGCC
* * *
76621748 ATTTTCTGTTACTGACATACCGAAGTTGCC
1 ATTTTCTGTTACAGACATAACGAAGCTGCC
76621778 ATTTT
1 ATTTT
76621783 ACATCCTTCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (30 bp):
ATTTTCTGTTACAGACATAACGAAGCTGCC
Found at i:76622105 original size:20 final size:21
Alignment explanation
Indices: 76622067--76622105 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
76622057 ACCAGTAAGT
76622067 TTCTCTCTTTCTCTCATCATA
1 TTCTCTCTTTCTCTCATCATA
* *
76622088 TTCT-TCTTTTTCTTATCA
1 TTCTCTCTTTCTCTCATCA
76622106 AAATGATAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.13, C:0.28, G:0.00, T:0.59
Consensus pattern (21 bp):
TTCTCTCTTTCTCTCATCATA
Found at i:76622887 original size:39 final size:39
Alignment explanation
Indices: 76622753--76622889 Score: 140
Period size: 39 Copynumber: 3.5 Consensus size: 39
76622743 GTAGAGAGAA
* *
76622753 AGGGACGGTGGGAGAGAGGGAGAGAA--GATGAGTAAGGTG
1 AGGGACGGTGGGA-AGAAGGAGAGAATCGA-GAGTAAGGGG
* *
76622792 AGGGATGGTGGAGAAG-AGAGTGAGAATC-AGAGTAAGGGG
1 AGGGACGGTGG-GAAGAAG-GAGAGAATCGAGAGTAAGGGG
*
76622831 AGGGACGGTGGGGAGAAGGAGAGAATCGA-AGTAAGGGGG
1 AGGGACGGTGGGAAGAAGGAGAGAATCGAGAGTAA-GGGG
*
76622870 AGGGATGGTGGGAAGAAGGA
1 AGGGACGGTGGGAAGAAGGA
76622890 AAGGGATGGG
Statistics
Matches: 82, Mismatches: 9, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
38 17 0.21
39 62 0.76
40 3 0.04
ACGTcount: A:0.34, C:0.03, G:0.53, T:0.10
Consensus pattern (39 bp):
AGGGACGGTGGGAAGAAGGAGAGAATCGAGAGTAAGGGG
Found at i:76623702 original size:25 final size:25
Alignment explanation
Indices: 76623668--76623821 Score: 175
Period size: 25 Copynumber: 6.2 Consensus size: 25
76623658 TCCCTGAACG
*
76623668 TCTGCTGCATTGCCATCGACAGTCC
1 TCTGTTGCATTGCCATCGACAGTCC
**
76623693 TCTGTTGCATCACCATCGACAGTCC
1 TCTGTTGCATTGCCATCGACAGTCC
** * * *
76623718 TCTGCCGCATCGTCATCGAAAGTCC
1 TCTGTTGCATTGCCATCGACAGTCC
*
76623743 TCTGTTGCATTGCCATCGAAAGTCC
1 TCTGTTGCATTGCCATCGACAGTCC
* * *
76623768 TCTATCGCATTGCCATCGATAGTCC
1 TCTGTTGCATTGCCATCGACAGTCC
*
76623793 TCT-TCTACATTGCCATCGACAGTCC
1 TCTGT-TGCATTGCCATCGACAGTCC
76623818 TCTG
1 TCTG
76623822 CCGCATCGCC
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
24 1 0.01
25 108 0.99
ACGTcount: A:0.19, C:0.34, G:0.18, T:0.30
Consensus pattern (25 bp):
TCTGTTGCATTGCCATCGACAGTCC
Found at i:76623743 original size:50 final size:50
Alignment explanation
Indices: 76623668--76623831 Score: 204
Period size: 50 Copynumber: 3.3 Consensus size: 50
76623658 TCCCTGAACG
* * * **
76623668 TCTGCTGCATTGCCATCGACAGTCCTCTGTTGCATCACCATCGACAGTCC
1 TCTGCCGCATCGCCATCGAAAGTCCTCTGTTGCATTGCCATCGACAGTCC
* *
76623718 TCTGCCGCATCGTCATCGAAAGTCCTCTGTTGCATTGCCATCGAAAGTCC
1 TCTGCCGCATCGCCATCGAAAGTCCTCTGTTGCATTGCCATCGACAGTCC
** * * *
76623768 TCTATCGCATTGCCATCGATAGTCCTCT-TCTACATTGCCATCGACAGTCC
1 TCTGCCGCATCGCCATCGAAAGTCCTCTGT-TGCATTGCCATCGACAGTCC
76623818 TCTGCCGCATCGCC
1 TCTGCCGCATCGCC
76623832 GTGTAAGTTT
Statistics
Matches: 96, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 1 0.01
50 95 0.99
ACGTcount: A:0.18, C:0.35, G:0.18, T:0.29
Consensus pattern (50 bp):
TCTGCCGCATCGCCATCGAAAGTCCTCTGTTGCATTGCCATCGACAGTCC
Found at i:76623810 original size:75 final size:75
Alignment explanation
Indices: 76623668--76623827 Score: 194
Period size: 75 Copynumber: 2.1 Consensus size: 75
76623658 TCCCTGAACG
* * * * *
76623668 TCTGCTGCATTGCCATCGACAGTCCTCTGTTGCATCACCATCGACAGTCCTCTGCCGCATCGTCA
1 TCTGCTGCATTGCCATCGAAAGTCCTCTATCGCATCACCATCGACAGTCCTCTGCCACATCGCCA
76623733 TCGAAAGTCC
66 TCGAAAGTCC
* ** * * * *
76623743 TCTGTTGCATTGCCATCGAAAGTCCTCTATCGCATTGCCATCGATAGTCCTCTTCTACATTGCCA
1 TCTGCTGCATTGCCATCGAAAGTCCTCTATCGCATCACCATCGACAGTCCTCTGCCACATCGCCA
*
76623808 TCGACAGTCC
66 TCGAAAGTCC
*
76623818 TCTGCCGCAT
1 TCTGCTGCAT
76623828 CGCCGTGTAA
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.19, C:0.34, G:0.17, T:0.29
Consensus pattern (75 bp):
TCTGCTGCATTGCCATCGAAAGTCCTCTATCGCATCACCATCGACAGTCCTCTGCCACATCGCCA
TCGAAAGTCC
Found at i:76623978 original size:23 final size:23
Alignment explanation
Indices: 76623951--76623998 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
76623941 CCAGAAACAG
*
76623951 CAACCCATAAAAGAGAAAAAAAA
1 CAACCCAGAAAAGAGAAAAAAAA
76623974 CAACCCAGAAAAGAGAAAAAAAA
1 CAACCCAGAAAAGAGAAAAAAAA
76623997 CA
1 CA
76623999 GCAACCCATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.69, C:0.19, G:0.10, T:0.02
Consensus pattern (23 bp):
CAACCCAGAAAAGAGAAAAAAAA
Found at i:76628600 original size:18 final size:19
Alignment explanation
Indices: 76628568--76628629 Score: 56
Period size: 20 Copynumber: 3.3 Consensus size: 19
76628558 AAGTAATTAA
**
76628568 TATAATTTATTTATAAAAT
1 TATAATTTAAATATAAAAT
*
76628587 T-TAATTTGAATATATAAAT
1 TATAATTTAAATATA-AAAT
*
76628606 TATATTTTAAATATTAAAA-
1 TATAATTTAAATA-TAAAAT
76628625 TATAA
1 TATAA
76628630 CAATTACAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 10 0.29
19 10 0.29
20 12 0.35
21 2 0.06
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TATAATTTAAATATAAAAT
Found at i:76640201 original size:21 final size:22
Alignment explanation
Indices: 76640177--76640222 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
76640167 ATGTTTATAT
76640177 TTAATAAGATATAATA-AA-TTA
1 TTAATAAGAT-TAATATAATTTA
*
76640198 TTAATATGATTAATATAATTTA
1 TTAATAAGATTAATATAATTTA
76640220 TTA
1 TTA
76640223 TTTTAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 11 0.50
22 6 0.27
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (22 bp):
TTAATAAGATTAATATAATTTA
Found at i:76647147 original size:20 final size:19
Alignment explanation
Indices: 76647103--76647147 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
76647093 CTTGTATTTT
* *
76647103 TAAAAAATTTAAAATATTA
1 TAAAAAATCTAAAAAATTA
76647122 -AAAAAATCTAAAAAATATA
1 TAAAAAATCTAAAAAAT-TA
76647141 TAAAAAA
1 TAAAAAA
76647148 ATTTCTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 14 0.64
19 2 0.09
20 6 0.27
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAAAAATCTAAAAAATTA
Found at i:76648387 original size:21 final size:22
Alignment explanation
Indices: 76648349--76648392 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
76648339 CATACAAAGA
*
76648349 ATTTTTTATATGCAGATA-AAT
1 ATTTTTTATATGAAGATATAAT
76648370 ATTTTTT-TATGAATGATATAAT
1 ATTTTTTATATGAA-GATATAAT
76648392 A
1 A
76648393 ATTAATCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 11 0.55
22 4 0.20
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (22 bp):
ATTTTTTATATGAAGATATAAT
Found at i:76648966 original size:29 final size:29
Alignment explanation
Indices: 76648929--76648997 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 29
76648919 AAAATCTCAT
* * * *
76648929 TTTTTTTAAAAATAATAGAAATATGTCAC
1 TTTTATTAAAAATAACAGAAATAGGTCAA
* * *
76648958 TTTTGTTAAAATTAACAGAAATGGGTCAA
1 TTTTATTAAAAATAACAGAAATAGGTCAA
76648987 TTTTATTAAAA
1 TTTTATTAAAA
76648998 CGAGCCCAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (29 bp):
TTTTATTAAAAATAACAGAAATAGGTCAA
Found at i:76656206 original size:10 final size:10
Alignment explanation
Indices: 76656186--76656217 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
76656176 TAAACTTGAG
76656186 ATTTAAGGTAC
1 ATTT-AGGTAC
76656197 ATTTAGGTAC
1 ATTTAGGTAC
76656207 ATTTAGGTAC
1 ATTTAGGTAC
76656217 A
1 A
76656218 CACAACCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 17 0.81
11 4 0.19
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (10 bp):
ATTTAGGTAC
Found at i:76659244 original size:7 final size:7
Alignment explanation
Indices: 76659232--76659274 Score: 59
Period size: 7 Copynumber: 6.0 Consensus size: 7
76659222 TATGCATGCC
76659232 ATATGAT
1 ATATGAT
76659239 ATATGAT
1 ATATGAT
76659246 ATATGAT
1 ATATGAT
76659253 ATATGTAT
1 ATATG-AT
*
76659261 GTATGAT
1 ATATGAT
*
76659268 ATTTGAT
1 ATATGAT
76659275 TAAGATATGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
7 26 0.81
8 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (7 bp):
ATATGAT
Found at i:76659283 original size:22 final size:22
Alignment explanation
Indices: 76659240--76659283 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
76659230 CCATATGATA
*
76659240 TATGATATATGATATATGTATG
1 TATGATATATGATATAAGTATG
*
76659262 TATGATATTTGAT-TAAGATATG
1 TATGATATATGATATAAG-TATG
76659284 CATATGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (22 bp):
TATGATATATGATATAAGTATG
Found at i:76659785 original size:30 final size:27
Alignment explanation
Indices: 76659751--76659811 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 27
76659741 TAAGTATTAT
*
76659751 GGACTTTCTTTTGTTTAATATGGACGTTTA
1 GGACTTTCTTTGGTTT--TATGGAC-TTTA
*
76659781 GGACTTTCTTTGGTTTTATGGACTTTT
1 GGACTTTCTTTGGTTTTATGGACTTTA
76659808 GGAC
1 GGAC
76659812 ATTTTAAGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 7 0.24
28 7 0.24
30 15 0.52
ACGTcount: A:0.16, C:0.11, G:0.23, T:0.49
Consensus pattern (27 bp):
GGACTTTCTTTGGTTTTATGGACTTTA
Found at i:76660748 original size:39 final size:40
Alignment explanation
Indices: 76660691--76660782 Score: 141
Period size: 39 Copynumber: 2.3 Consensus size: 40
76660681 AAATATATTT
* * * *
76660691 ATTTTTTAAATTTTAAAATATTTTTTACATAC-TTTTTTA
1 ATTTTTTTAATTTAAAAATATTTTTAAAATACTTTTTTTA
76660730 ATTTTTTTAATTTAAAAATATTTTTAAAATACTTTTTTTA
1 ATTTTTTTAATTTAAAAATATTTTTAAAATACTTTTTTTA
76660770 ATTTTTTTAATTT
1 ATTTTTTTAATTT
76660783 TTTTAATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
39 28 0.58
40 20 0.42
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (40 bp):
ATTTTTTTAATTTAAAAATATTTTTAAAATACTTTTTTTA
Found at i:76660815 original size:31 final size:31
Alignment explanation
Indices: 76660780--76660840 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
76660770 ATTTTTTTAA
76660780 TTTTTTTA-ATTTTAAAATATTTTTAAAATAC
1 TTTTTTTAGATTTTAAAA-ATTTTTAAAATAC
* *
76660811 TTTTTTTAGTTTTTTAAAATTTTTAAAATA
1 TTTTTTTAGATTTTAAAAATTTTTAAAATA
76660841 AAAATGGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 20 0.74
32 7 0.26
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (31 bp):
TTTTTTTAGATTTTAAAAATTTTTAAAATAC
Found at i:76660816 original size:50 final size:49
Alignment explanation
Indices: 76660701--76660834 Score: 191
Period size: 49 Copynumber: 2.7 Consensus size: 49
76660691 ATTTTTTAAA
76660701 TTTTAAAATA--TTTTTTACATACTTTTTTAATTTTTTTAATTTAAAAATAT
1 TTTTAAAATACTTTTTTTA-AT--TTTTTTAATTTTTTTAATTTAAAAATAT
*
76660751 TTTTAAAATACTTTTTTTAATTTTTTTAATTTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTTTTTAATTTTTTTAATTTTTTTAATTTAAAAATAT
* * *
76660800 TTTTAAAATACTTTTTTTAGTTTTTTAAAATTTTT
1 TTTTAAAATACTTTTTTTAATTTTTTTAATTTTTT
76660835 AAAATAAAAA
Statistics
Matches: 78, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
49 59 0.76
50 10 0.13
51 2 0.03
52 7 0.09
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (49 bp):
TTTTAAAATACTTTTTTTAATTTTTTTAATTTTTTTAATTTAAAAATAT
Found at i:76664254 original size:38 final size:40
Alignment explanation
Indices: 76664203--76664282 Score: 137
Period size: 38 Copynumber: 2.0 Consensus size: 40
76664193 AGTAGTGAGG
*
76664203 GTGTTGGAGTGATTTTAGGAGGAAAATATGGGA-T-TGGA
1 GTGTTGGAGTGATTTTAGAAGGAAAATATGGGACTGTGGA
76664241 GTGTTGGAGTGATTTTAGAAGGAAAATATGGGACTGTGGA
1 GTGTTGGAGTGATTTTAGAAGGAAAATATGGGACTGTGGA
76664281 GT
1 GT
76664283 TATCCCAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 32 0.82
39 1 0.03
40 6 0.15
ACGTcount: A:0.29, C:0.01, G:0.39, T:0.31
Consensus pattern (40 bp):
GTGTTGGAGTGATTTTAGAAGGAAAATATGGGACTGTGGA
Found at i:76665801 original size:34 final size:35
Alignment explanation
Indices: 76665779--76665843 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
76665769 TAATGCTTAT
*
76665779 TGATACTGAAATGGGCTTAGG-CCTAAACTGATAC
1 TGATACTGAAAAGGGCTTAGGCCCTAAACTGATAC
76665813 TGATACTGAAAAGGGCTTAGGCCC-AAACTGA
1 TGATACTGAAAAGGGCTTAGGCCCTAAACTGA
76665844 GATTATTTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 27 0.93
35 2 0.07
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (35 bp):
TGATACTGAAAAGGGCTTAGGCCCTAAACTGATAC
Found at i:76667656 original size:42 final size:43
Alignment explanation
Indices: 76667596--76667693 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 43
76667586 TGAGATTTAT
* *
76667596 GTGTAAGACCATGTCTGGGAG-ATTGGCATCG-TATATGATTAC
1 GTGTAAGACCATGCCTGGG-GCAATGGCATCGTTATATGATTAC
* * *
76667638 GTGTAAGACCTTGCCTGGGGCAATGGCATCGTTGTTTGATTAC
1 GTGTAAGACCATGCCTGGGGCAATGGCATCGTTATATGATTAC
*
76667681 ATGTAAGACCATG
1 GTGTAAGACCATG
76667694 TCTAGGACGT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 26 0.55
43 20 0.43
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATGCCTGGGGCAATGGCATCGTTATATGATTAC
Found at i:76667708 original size:43 final size:42
Alignment explanation
Indices: 76667551--76667709 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
76667541 AAAGTGACAT
* * *
76667551 CGTGTAAGACCACGTCTAGGGCGTTGGCCTCGATTTGA-GATTTA
1 CGTGTAAGACCATGTCTAGGACGTTGGCATCG-TTT-ATGA-TTA
* * *
76667595 TGTGTAAGACCATGTCTGGGA-GATTGGCATCGTATATGATTA
1 CGTGTAAGACCATGTCTAGGACG-TTGGCATCGTTTATGATTA
* * * * ** *
76667637 CGTGTAAGACCTTGCCTGGGGCAATGGCATCGTTGTTTGATTA
1 CGTGTAAGACCATGTCTAGGACGTTGGCATCGTT-TATGATTA
*
76667680 CATGTAAGACCATGTCTAGGACGTTGGCAT
1 CGTGTAAGACCATGTCTAGGACGTTGGCAT
76667710 TGTATGAGCT
Statistics
Matches: 90, Mismatches: 21, Indels: 9
0.75 0.17 0.08
Matches are distributed among these distances:
42 30 0.33
43 35 0.39
44 25 0.28
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTAGGACGTTGGCATCGTTTATGATTA
Found at i:76676131 original size:16 final size:16
Alignment explanation
Indices: 76676110--76676141 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76676100 GTTTTGTTGC
*
76676110 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
76676126 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
76676142 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:76676423 original size:51 final size:51
Alignment explanation
Indices: 76676359--76676559 Score: 221
Period size: 51 Copynumber: 4.0 Consensus size: 51
76676349 ATTAATGATA
* * *
76676359 CCGGTTCACGTAGTAGCCTGCACATAGTACTACACATGTAACCATCACTAT
1 CCGGTACACGTAGTACCCTGCACATAGTACTACACACGTAACCATCACTAT
* * * *
76676410 CCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTAT
1 CCGGTACACGTAGTACCCTGCACATAGTACTACACACGT-AACCATCA-CTAT
* * * **
76676461 CCGGTACGCATAGTACCCTGCACATAGTACTACACATGCGACCTATCA-T-T
1 CCGGTACACGTAGTACCCTGCACATAGTACTACACACGTAACC-ATCACTAT
* *
76676511 CTGGTACACGTAGTACCCTGCACATAGTACTACACACGTGACCATCACT
1 CCGGTACACGTAGTACCCTGCACATAGTACTACACACGTAACCATCACT
76676560 TTCACTTTCA
Statistics
Matches: 125, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
49 4 0.03
50 42 0.34
51 75 0.60
52 3 0.02
53 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (51 bp):
CCGGTACACGTAGTACCCTGCACATAGTACTACACACGTAACCATCACTAT
Found at i:76676547 original size:101 final size:102
Alignment explanation
Indices: 76676369--76676551 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 102
76676359 CCGGTTCACG
* * *
76676369 TAGTAGCCTGCACATAGTACTACACATGTAACCATCACTATCCGATACACGTAGTAGCCTGCACA
1 TAGTACCCTGCACATAGTACTACACATGCAACCATCACTATCCGATACACGTAGTACCCTGCACA
76676434 TAGTACTACACACGTGATCGAAGCTATCCGGTACGCA
66 TAGTACTACACACGTGATCGAAGCTATCCGGTACGCA
* * *
76676471 TAGTACCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTACCCTGCAC
1 TAGTACCCTGCACATAGTACTACACATGCAACC-ATCACTATCCGATACACGTAGTACCCTGCAC
76676534 ATAGTACTACACACGTGA
65 ATAGTACTACACACGTGA
76676552 CCATCACTTT
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
101 39 0.53
102 31 0.42
103 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (102 bp):
TAGTACCCTGCACATAGTACTACACATGCAACCATCACTATCCGATACACGTAGTACCCTGCACA
TAGTACTACACACGTGATCGAAGCTATCCGGTACGCA
Found at i:76676781 original size:16 final size:16
Alignment explanation
Indices: 76676760--76676790 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76676750 AATCCAGTCC
76676760 AAAAATCACATTTTGG
1 AAAAATCACATTTTGG
*
76676776 AAAAATTACATTTTG
1 AAAAATCACATTTTG
76676791 CCCCTAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (16 bp):
AAAAATCACATTTTGG
Found at i:76679466 original size:34 final size:35
Alignment explanation
Indices: 76679441--76679508 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
76679431 CCCTAATGCT
* *
76679441 TACTGATACTGAAATGGGCTTAGG-CCTAAACTGA
1 TACTGATACTAAAAAGGGCTTAGGCCCTAAACTGA
*
76679475 TACTGATACTAAAAAGAGCTTAGGCCC-AAACTGA
1 TACTGATACTAAAAAGGGCTTAGGCCCTAAACTGA
76679509 GATTACCTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (35 bp):
TACTGATACTAAAAAGGGCTTAGGCCCTAAACTGA
Found at i:76681863 original size:19 final size:21
Alignment explanation
Indices: 76681821--76681862 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
76681811 AATATGGACG
* *
76681821 AATTGAGATTGTATAAATTAA
1 AATTGAAATTGTATAAACTAA
76681842 AATTGAAATTGTA-AAACTAA
1 AATTGAAATTGTATAAACTAA
76681862 A
1 A
76681863 TAGAATAGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.52, C:0.02, G:0.12, T:0.33
Consensus pattern (21 bp):
AATTGAAATTGTATAAACTAA
Found at i:76683777 original size:13 final size:13
Alignment explanation
Indices: 76683759--76683799 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
76683749 AACATGCAAG
76683759 AAAATAAAAATAA
1 AAAATAAAAATAA
* *
76683772 AAAATATATATAA
1 AAAATAAAAATAA
76683785 AAAATAAAAATAA
1 AAAATAAAAATAA
76683798 AA
1 AA
76683800 TTGGGTTGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAATAAAAATAA
Found at i:76684888 original size:19 final size:19
Alignment explanation
Indices: 76684864--76684900 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
76684854 TTAAAGTTAT
76684864 TTAGGTAGATAAATCTTAC
1 TTAGGTAGATAAATCTTAC
*
76684883 TTAGGTGGATAAATCTTA
1 TTAGGTAGATAAATCTTA
76684901 GAATAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (19 bp):
TTAGGTAGATAAATCTTAC
Found at i:76685692 original size:24 final size:24
Alignment explanation
Indices: 76685664--76685713 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
76685654 AATTTTAGGA
76685664 CATAGTCTCGGGGAGGATGATTAG
1 CATAGTCTCGGGGAGGATGATTAG
76685688 CATAGTCTCGGGGAGGATGATTAG
1 CATAGTCTCGGGGAGGATGATTAG
76685712 CA
1 CA
76685714 ATGCTAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.14, G:0.36, T:0.24
Consensus pattern (24 bp):
CATAGTCTCGGGGAGGATGATTAG
Found at i:76688749 original size:19 final size:19
Alignment explanation
Indices: 76688725--76688765 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
76688715 TATTTTAAAG
76688725 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
76688744 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
76688763 TTA
1 TTA
76688766 GAATAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:76692780 original size:15 final size:15
Alignment explanation
Indices: 76692762--76692791 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
76692752 TTTATACTTC
76692762 TTATGCCTATAAATA
1 TTATGCCTATAAATA
76692777 TTATGCCTATAAATA
1 TTATGCCTATAAATA
76692792 GAGACTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (15 bp):
TTATGCCTATAAATA
Found at i:76693803 original size:34 final size:33
Alignment explanation
Indices: 76693765--76693863 Score: 88
Period size: 34 Copynumber: 3.2 Consensus size: 33
76693755 TAAACACAAC
*
76693765 AATTTATAACAGAATCCTAAATTACTAATAAATT
1 AATTTATAACA-AATCCTAAATTACTAACAAATT
* *
76693799 AATTT-T-A-AAA---T-AATTACAAACACAA-C
1 AATTTATAACAAATCCTAAATTACTAACA-AATT
76693825 AATTTATAACATAATCCTAAATTACTAACAAATT
1 AATTTATAACA-AATCCTAAATTACTAACAAATT
76693859 AATTT
1 AATTT
76693864 TAAAATAATT
Statistics
Matches: 50, Mismatches: 5, Indels: 20
0.67 0.07 0.27
Matches are distributed among these distances:
26 14 0.28
27 4 0.08
28 1 0.02
29 1 0.02
30 4 0.08
31 1 0.02
32 1 0.02
33 4 0.08
34 20 0.40
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.34
Consensus pattern (33 bp):
AATTTATAACAAATCCTAAATTACTAACAAATT
Found at i:76693823 original size:60 final size:60
Alignment explanation
Indices: 76693756--76693874 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
76693746 ATACTAAACT
*
76693756 AAACACAACAATTTATAACAGAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACAGAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
*
76693816 AAACACAACAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAACAATTTATAACAGAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
76693875 TAAAAAAAAC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (60 bp):
AAACACAACAATTTATAACAGAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:76694169 original size:26 final size:25
Alignment explanation
Indices: 76694139--76694195 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 25
76694129 AATATTTCTA
76694139 ATAAAAATAAAATAATAATATTTTATT
1 ATAAAAAT-AAA-AATAATATTTTATT
*
76694166 -T-AAAGTAAAAATAATATTTTATT
1 ATAAAAATAAAAATAATATTTTATT
76694189 ATAAAAA
1 ATAAAAA
76694196 AAGTGATTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
23 14 0.54
24 4 0.15
25 7 0.27
26 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (25 bp):
ATAAAAATAAAAATAATATTTTATT
Found at i:76694539 original size:32 final size:33
Alignment explanation
Indices: 76694478--76694559 Score: 112
Period size: 32 Copynumber: 2.4 Consensus size: 33
76694468 TTTGTTAAAT
*
76694478 ATTTATGTGAGGCATGATAGACAAAAAAAAATATAC
1 ATTTATATGAGG-ATGATAGAC--AAAAAAATATAC
*
76694514 ATTTATATGAGGATGATAGAC-AAAAAATATAT
1 ATTTATATGAGGATGATAGACAAAAAAATATAC
76694546 ATTTATATGAGGAT
1 ATTTATATGAGGAT
76694560 TTAGTTATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
32 24 0.55
35 9 0.20
36 11 0.25
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.30
Consensus pattern (33 bp):
ATTTATATGAGGATGATAGACAAAAAAATATAC
Found at i:76697332 original size:31 final size:25
Alignment explanation
Indices: 76697266--76697325 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
76697256 TAGAAAGACC
*
76697266 AAAATTGAAAATTAATTATTGTTAT
1 AAAATTAAAAATTAATTATTGTTAT
76697291 AAAATTAAAAATTAATTATTGTTAT
1 AAAATTAAAAATTAATTATTGTTAT
*
76697316 AAAATGAAAA
1 AAAATTAAAA
76697326 TAAAAAACAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (25 bp):
AAAATTAAAAATTAATTATTGTTAT
Found at i:76705499 original size:22 final size:21
Alignment explanation
Indices: 76705474--76705516 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
76705464 AAATTTGGTG
76705474 GTAACCGATCTTTAAATCAAT
1 GTAACCGATCTTTAAATCAAT
*
76705495 NGTAACCGCTCTTTAAATCAAT
1 -GTAACCGATCTTTAAATCAAT
76705517 TTTTGTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.33
Consensus pattern (21 bp):
GTAACCGATCTTTAAATCAAT
Found at i:76706049 original size:19 final size:17
Alignment explanation
Indices: 76706020--76706065 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
76706010 ATGCACTCAA
76706020 TTTTTCACTTTCTCTTT
1 TTTTTCACTTTCTCTTT
*
76706037 CTTTTTCATCTTTTTC-TT
1 -TTTTTCA-CTTTCTCTTT
76706055 TTTTTCACTTT
1 TTTTTCACTTT
76706066 ATTTTCCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 4 0.15
17 7 0.27
18 9 0.35
19 6 0.23
ACGTcount: A:0.07, C:0.22, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTCACTTTCTCTTT
Found at i:76708283 original size:28 final size:28
Alignment explanation
Indices: 76708237--76708316 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
76708227 ATTATATATA
*
76708237 TTTTTTAATTTCGA--TTTTTTTAACTT
1 TTTTTTAATTTCAATTTTTTTTTAACTT
*
76708263 TTTTTTAATTTCAATTTTTTTTCAACTT
1 TTTTTTAATTTCAATTTTTTTTTAACTT
*
76708291 TTTTTTCATTTCGAATTCTTTTTTTA
1 TTTTTTAATTTC-AATT-TTTTTTTA
76708317 CGTACCTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
26 13 0.28
28 22 0.48
29 4 0.09
30 7 0.15
ACGTcount: A:0.19, C:0.10, G:0.03, T:0.69
Consensus pattern (28 bp):
TTTTTTAATTTCAATTTTTTTTTAACTT
Found at i:76710977 original size:15 final size:16
Alignment explanation
Indices: 76710943--76710978 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
76710933 TTATCATTAA
*
76710943 AAATAAAAAAAAACTC
1 AAATTAAAAAAAACTC
76710959 AAATTAAAAAAAACT-
1 AAATTAAAAAAAACTC
76710974 AAATT
1 AAATT
76710979 TCTGAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.19
Consensus pattern (16 bp):
AAATTAAAAAAAACTC
Found at i:76713140 original size:34 final size:34
Alignment explanation
Indices: 76713085--76713150 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
76713075 CAAACACTAG
*
76713085 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTAC-GAAAAGT
*
76713120 AAAACATTTTCCCG-AAATCATTTTACGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACGAAAA
76713151 ATATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.41
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (34 bp):
AAAACATTTTCCAGTAAATCATTTTACGAAAAGT
Found at i:76713652 original size:11 final size:10
Alignment explanation
Indices: 76713625--76713665 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
76713615 TCCTTATTTG
76713625 CATAATTAAA
1 CATAATTAAA
76713635 CATAATTAAA
1 CATAATTAAA
*
76713645 CAATAATTAAT
1 C-ATAATTAAA
*
76713656 CATAAATAAA
1 CATAATTAAA
76713666 TGTTAAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (10 bp):
CATAATTAAA
Found at i:76713652 original size:21 final size:21
Alignment explanation
Indices: 76713626--76713665 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76713616 CCTTATTTGC
*
76713626 ATAATTAAACATAATTAAACA
1 ATAATTAAACATAAATAAACA
*
76713647 ATAATTAATCATAAATAAA
1 ATAATTAAACATAAATAAA
76713666 TGTTAAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.30
Consensus pattern (21 bp):
ATAATTAAACATAAATAAACA
Found at i:76719424 original size:36 final size:37
Alignment explanation
Indices: 76719365--76719436 Score: 112
Period size: 35 Copynumber: 2.0 Consensus size: 37
76719355 TTAATAAACA
76719365 TTAAAAATCATTTTAAAAATTAAAAAAATAAAAATATT
1 TTAAAAATCATTTTAAAAATT-AAAAAATAAAAATATT
*
76719403 TTAAAAGT-ATTTT-AAAATTAAAAAATAAAAATAT
1 TTAAAAATCATTTTAAAAATTAAAAAATAAAAATAT
76719437 ATATTTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 15 0.45
36 6 0.18
37 5 0.15
38 7 0.21
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (37 bp):
TTAAAAATCATTTTAAAAATTAAAAAATAAAAATATT
Found at i:76719458 original size:5 final size:5
Alignment explanation
Indices: 76719451--76719486 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
76719441 TTATTATATT
*
76719451 CGGGT CGGGC CGGGC CGGGC CGGGC CGGGC CAGGGC
1 CGGGC CGGGC CGGGC CGGGC CGGGC CGGGC C-GGGC
76719487 AAAAAAGTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.03, C:0.36, G:0.58, T:0.03
Consensus pattern (5 bp):
CGGGC
Found at i:76720176 original size:13 final size:13
Alignment explanation
Indices: 76720139--76720189 Score: 59
Period size: 13 Copynumber: 3.9 Consensus size: 13
76720129 TTCTTCATTG
76720139 CTTTTGAAAAGTA
1 CTTTTGAAAAGTA
*
76720152 -TTGTGGAAAAGTA
1 CTT-TTGAAAAGTA
* *
76720165 CTTTTGAGAAGTG
1 CTTTTGAAAAGTA
76720178 CTTTTGAAAAGT
1 CTTTTGAAAAGT
76720190 TTAGTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
12 2 0.06
13 27 0.87
14 2 0.06
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:76723296 original size:16 final size:16
Alignment explanation
Indices: 76723275--76723313 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
76723265 ACCTTATCAT
76723275 AAGCTTTACTCATATC
1 AAGCTTTACTCATATC
76723291 AAGCTTTACTCATATC
1 AAGCTTTACTCATATC
*
76723307 AACCTTT
1 AAGCTTT
76723314 TTGTAGGCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (16 bp):
AAGCTTTACTCATATC
Found at i:76727311 original size:22 final size:22
Alignment explanation
Indices: 76727286--76727332 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
76727276 ATACTATATG
76727286 AAATAAAAATATATT-ATTAAAT
1 AAATAAAAATA-ATTAATTAAAT
*
76727308 AAATTAAAATAATTAATTAAAT
1 AAATAAAAATAATTAATTAAAT
76727330 AAA
1 AAA
76727333 AATAACTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AAATAAAAATAATTAATTAAAT
Found at i:76727337 original size:18 final size:18
Alignment explanation
Indices: 76727301--76727342 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
76727291 AAAATATATT
*
76727301 ATTAAATAAATTAAAATA
1 ATTAAATAAATAAAAATA
*
76727319 ATTAATTAAATAAAAATA
1 ATTAAATAAATAAAAATA
*
76727337 ACTAAA
1 ATTAAA
76727343 CACATAATAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (18 bp):
ATTAAATAAATAAAAATA
Found at i:76734251 original size:28 final size:27
Alignment explanation
Indices: 76734204--76734257 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
76734194 TTTCAATTAA
*
76734204 TAAAATAATTAATTAAATAAATAAAAC
1 TAAAATAATTAATTAAATAAAAAAAAC
*
76734231 TAAAAGTAATTGAA-TATATAAAAAAAA
1 TAAAA-TAATT-AATTAAATAAAAAAAA
76734258 TCATATTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 5 0.22
28 16 0.70
29 2 0.09
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.28
Consensus pattern (27 bp):
TAAAATAATTAATTAAATAAAAAAAAC
Found at i:76741202 original size:25 final size:24
Alignment explanation
Indices: 76741151--76741201 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
76741141 TTGAATATTA
* *
76741151 TTTAATATTTTTTATTTATGTAAT
1 TTTAATAATTTTTATTTATATAAT
76741175 TTTAATTAATTTTTATTT-TATAAT
1 TTTAA-TAATTTTTATTTATATAAT
76741199 TTT
1 TTT
76741202 TTATAACAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTAATAATTTTTATTTATATAAT
Found at i:76742780 original size:18 final size:18
Alignment explanation
Indices: 76742757--76742799 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
76742747 TGTCAGGTGC
*
76742757 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
76742775 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
76742793 GTTTCCT
1 GTATCCT
76742800 TTTCTCAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.28, G:0.09, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:76746810 original size:126 final size:126
Alignment explanation
Indices: 76746369--76746889 Score: 731
Period size: 126 Copynumber: 4.1 Consensus size: 126
76746359 GGCCAAACAT
* * *
76746369 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTAAGTAATTCTGTTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * *
76746434 CTGCTTGAAGCGTTTTTGACACTATTTTTTTTAGAATCGTCTTCTCAAAATTATTTTTTCTG
66 CTGCTTGAAGCGTTTTTGACACTA-TTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAG
* * * *
76746496 AAACTATTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* *
76746561 CTGCTTGAAGTGTTTTTGACACTATTTTTTCAAAACTGTCTTCTCAAAATTA-TTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAG
* * * *
76746621 GAACTACTGTAGAAATAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * *
76746686 CTGCTTGAAGAGTTTTTGAAACTATTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAG
* * * *
76746747 GAACTACTGTAGAAAAGGAGCATCCACTTGGGAGCTTTTTTCAGTAAGTTTGCTAACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
* * * * *
76746812 CTGCTTGAAGCGTTTTTGGCATTATCTTCTCAAAACCGTCTTCTCAAAATTAATTTTTCTA-
66 CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTC-AG
*
76746873 AAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
76746890 AACAAAATCC
Statistics
Matches: 349, Mismatches: 43, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
125 113 0.32
126 154 0.44
127 82 0.23
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAG
Found at i:76746820 original size:251 final size:253
Alignment explanation
Indices: 76746369--76746889 Score: 760
Period size: 251 Copynumber: 2.1 Consensus size: 253
76746359 GGCCAAACAT
*
76746369 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTAAGTAATTCTGTTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTAAGTAATTCTGCTGACAGTGCATC
* * * * *
76746434 CTGCTTGAAGCGTTTTTGACACTATTTTTTTTAGAATCGTCTTCTCAAAATTATTTTTTCTGAAA
66 CTGCTTGAAGAGTTTTTGAAACTATTTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGAAA
* * * *
76746499 CTATTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGATAGTGCATCCTG
131 CTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTAAGTTTGCTAACAGTGCATCCTG
* * * *
76746564 CTTGAAGTGTTTTTGACACTATTTTTTCAAAACTGTCTTCTCAAAATT-ATTTTTC-A
196 CTTGAAGCGTTTTTGACACTATCTTCTCAAAACCGTCTTCTCAAAATTAATTTTTCTA
* * * * * *
76746620 GGAACTACTGTAGAAATAGAGCGTCTACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGCAT
1 -GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTAAGTAATTCTGCTGACAGTGCAT
* *
76746685 CCTGCTTGAAGAGTTTTTGAAACTA-TTTTTTCAGAACCGTCTTCTTAAAATTATTTTTTCAGGA
65 CCTGCTTGAAGAGTTTTTGAAACTATTTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGAA
* * *
76746749 ACTACTGTAGAAAAGGAGCATCCACTTGGGAGCTTTTTTCAGTAAGTTTGCTAACAGTGCATCCT
130 ACTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTAAGTTTGCTAACAGTGCATCCT
* *
76746814 GCTTGAAGCGTTTTTGGCATTATCTTCTCAAAACCGTCTTCTCAAAATTAATTTTTCTA
195 GCTTGAAGCGTTTTTGACACTATCTTCTCAAAACCGTCTTCTCAAAATTAATTTTTCTA
*
76746873 AAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
76746890 AACAAAATCC
Statistics
Matches: 238, Mismatches: 29, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
251 135 0.57
252 102 0.43
253 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (253 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTAAGTAATTCTGCTGACAGTGCATC
CTGCTTGAAGAGTTTTTGAAACTATTTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGAAA
CTACTGTAGAAAAAGAGCATCCACGTGAGAGCTTTTTTCAGTAAGTTTGCTAACAGTGCATCCTG
CTTGAAGCGTTTTTGACACTATCTTCTCAAAACCGTCTTCTCAAAATTAATTTTTCTA
Done.