Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 250 of 313
Found at i:76901520 original size:18 final size:18
Alignment explanation
Indices: 76901497--76901534 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
76901487 TTTTTAAAAA
76901497 TATAAATATTGAAATTTT
1 TATAAATATTGAAATTTT
**
76901515 TATAAATATTTTAATTTT
1 TATAAATATTGAAATTTT
76901533 TA
1 TA
76901535 ATTTTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
TATAAATATTGAAATTTT
Found at i:76902897 original size:14 final size:14
Alignment explanation
Indices: 76902878--76902905 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76902868 ATGTTTAAGG
76902878 CTTAATTAATCTAA
1 CTTAATTAATCTAA
76902892 CTTAATTAATCTAA
1 CTTAATTAATCTAA
76902906 TCATGATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (14 bp):
CTTAATTAATCTAA
Found at i:76905338 original size:24 final size:24
Alignment explanation
Indices: 76905306--76905355 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
76905296 GGGTAGGATA
76905306 TGTGATTGCATTTATATCAGAATT
1 TGTGATTGCATTTATATCAGAATT
* * *
76905330 TGTGTTTGCATTTGTATCTGAATT
1 TGTGATTGCATTTATATCAGAATT
76905354 TG
1 TG
76905356 ATTATGTGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.08, G:0.20, T:0.50
Consensus pattern (24 bp):
TGTGATTGCATTTATATCAGAATT
Found at i:76907902 original size:30 final size:30
Alignment explanation
Indices: 76907813--76907905 Score: 150
Period size: 30 Copynumber: 3.1 Consensus size: 30
76907803 ACTTAACAAG
* *
76907813 CAAATGTCTCTAAAATAATAACAAAATTAG
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
76907843 CAAATGCATCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
76907873 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
76907903 CAA
1 CAA
76907906 TAAAGTAAGT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.57, C:0.14, G:0.04, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:76907960 original size:22 final size:22
Alignment explanation
Indices: 76907935--76907981 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
76907925 TATCCAAACA
76907935 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* ** *
76907957 ATAATAGTAAAATGGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
76907979 ATA
1 ATA
76907982 TGGAGAAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.13, G:0.13, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:76909581 original size:22 final size:22
Alignment explanation
Indices: 76909538--76909583 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
76909528 GGAGCACCAT
* *
76909538 TAAGGGCCTAGGTATAGGTACC
1 TAAGGCCCTAGGTATAGATACC
76909560 TAAGGCCCTAGGTA-ACGATACC
1 TAAGGCCCTAGGTATA-GATACC
76909582 TA
1 TA
76909584 GTTCAGGAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TAAGGCCCTAGGTATAGATACC
Found at i:76909806 original size:13 final size:13
Alignment explanation
Indices: 76909788--76909817 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
76909778 TGTAAAACTC
76909788 CTCATAAAACTTA
1 CTCATAAAACTTA
76909801 CTCATAAAACTTA
1 CTCATAAAACTTA
76909814 CTCA
1 CTCA
76909818 AAATAAACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.30
Consensus pattern (13 bp):
CTCATAAAACTTA
Found at i:76918684 original size:49 final size:48
Alignment explanation
Indices: 76918606--76918774 Score: 135
Period size: 49 Copynumber: 3.5 Consensus size: 48
76918596 CTTAGGATGA
* * *
76918606 AAACCATCGTTGTTAAGCCATCC-GTGATGGTAGAATATGCAAATAGTGG
1 AAACCATCGTTGCTAGGCCA-CCAG-GATGGTAGAATATGAAAATAGTGG
* ** *
76918655 AAACCATCGTTGCTAGGCCACCAAGGATGGTAAAACGTGAAAATAGTGA
1 AAACCATCGTTGCTAGGCCACC-AGGATGGTAGAATATGAAAATAGTGG
* * * * * *
76918704 AAACCCATCATT-TTTGAGCCATCAGGATGGTAGGATATGAAAATACTGG
1 AAA-CCATCGTTGCTAG-GCCACCAGGATGGTAGAATATGAAAATAGTGG
* * *
76918753 AAACCATTGTTTCTGGGCCACC
1 AAACCATCGTTGCTAGGCCACC
76918775 TGGGATGATA
Statistics
Matches: 93, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
48 13 0.14
49 67 0.72
50 13 0.14
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (48 bp):
AAACCATCGTTGCTAGGCCACCAGGATGGTAGAATATGAAAATAGTGG
Found at i:76918772 original size:98 final size:98
Alignment explanation
Indices: 76918603--76918788 Score: 239
Period size: 98 Copynumber: 1.9 Consensus size: 98
76918593 TGCCTTAGGA
* * * *
76918603 TGAAAACCATCGTTGTTAAGCCATCCGTGATGGTAGAATATGCAAATAGTGGAAACCATCGTTGC
1 TGAAAACCATCATTGTTAAGCCATCAGTGATGGTAGAATATGAAAATACTGGAAACCATCGTTGC
*
76918668 TAGGCCACCAAGGATGGTAAAACGTGAAAATAG
66 TAGGCCACCAAGGATGATAAAACGTGAAAATAG
* * * * *
76918701 TGAAAACCCATCATTTTTGAGCCATCAG-GATGGTAGGATATGAAAATACTGGAAACCATTGTTT
1 TGAAAA-CCATCATTGTTAAGCCATCAGTGATGGTAGAATATGAAAATACTGGAAACCATCGTTG
* **
76918765 CTGGGCCACCTGGGATGATAAAAC
65 CTAGGCCACCAAGGATGATAAAAC
76918789 ATTCAAACTC
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
98 57 0.77
99 17 0.23
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (98 bp):
TGAAAACCATCATTGTTAAGCCATCAGTGATGGTAGAATATGAAAATACTGGAAACCATCGTTGC
TAGGCCACCAAGGATGATAAAACGTGAAAATAG
Found at i:76921245 original size:36 final size:36
Alignment explanation
Indices: 76921166--76921246 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
76921156 TACAATTTGG
* * * * *
76921166 AAATTAATACAGTTCGTCATATTATTACAAATCACT
1 AAATTAACACAGTTCGCCATAATAATACAAATCACC
* *
76921202 AAATTAACACAGTTCGCCATAATAATATAATTCACC
1 AAATTAACACAGTTCGCCATAATAATACAAATCACC
*
76921238 AAGTTAACA
1 AAATTAACA
76921247 TGGTTCACAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (36 bp):
AAATTAACACAGTTCGCCATAATAATACAAATCACC
Found at i:76926116 original size:40 final size:41
Alignment explanation
Indices: 76926050--76926134 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 41
76926040 ATTAAACCCT
* *
76926050 TAAAAATCAATAATTACAACAATTTATATGAAATAAATTAA
1 TAAAAATCAACAATTACAACAATTTATATAAAATAAATTAA
* *
76926091 TAAAAATTAACAATT-CAATAATTTATATAAAATAAATTAA
1 TAAAAATCAACAATTACAACAATTTATATAAAATAAATTAA
76926131 TAAA
1 TAAA
76926135 TTAATTGTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 27 0.68
41 13 0.32
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (41 bp):
TAAAAATCAACAATTACAACAATTTATATAAAATAAATTAA
Found at i:76931573 original size:18 final size:18
Alignment explanation
Indices: 76931550--76931587 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
76931540 CTAAATGTTT
76931550 TTTCGTAAAATGAGTAAG
1 TTTCGTAAAATGAGTAAG
76931568 TTTCGTAAAATGAGTAAG
1 TTTCGTAAAATGAGTAAG
76931586 TT
1 TT
76931588 CTGCGCATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (18 bp):
TTTCGTAAAATGAGTAAG
Found at i:76934412 original size:41 final size:41
Alignment explanation
Indices: 76934353--76934447 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
76934343 AATTGGGCTA
*
76934353 TGTAGGGTACACAAGTATGTGTGAGGCCATGTGGTAGGCCG
1 TGTAGGGCACACAAGTATGTGTGAGGCCATGTGGTAGGCCG
* *
76934394 TGTAGGGCACACATGTATGTGTGAGGCCATGTGGTAGGCTG
1 TGTAGGGCACACAAGTATGTGTGAGGCCATGTGGTAGGCCG
76934435 TGTAGGGCACACA
1 TGTAGGGCACACA
76934448 GGCGTGTGTG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.22, C:0.16, G:0.38, T:0.24
Consensus pattern (41 bp):
TGTAGGGCACACAAGTATGTGTGAGGCCATGTGGTAGGCCG
Found at i:76934456 original size:41 final size:41
Alignment explanation
Indices: 76934353--76934458 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 41
76934343 AATTGGGCTA
* * *
76934353 TGTAGGGTACACAAGTATGTGTGAGGCCATGTGGTAGGCCG
1 TGTAGGGCACACAGGCATGTGTGAGGCCATGTGGTAGGCCG
* * *
76934394 TGTAGGGCACACATGTATGTGTGAGGCCATGTGGTAGGCTG
1 TGTAGGGCACACAGGCATGTGTGAGGCCATGTGGTAGGCCG
*
76934435 TGTAGGGCACACAGGCGTGTGTGA
1 TGTAGGGCACACAGGCATGTGTGA
76934459 TCACACGGGC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.21, C:0.15, G:0.40, T:0.25
Consensus pattern (41 bp):
TGTAGGGCACACAGGCATGTGTGAGGCCATGTGGTAGGCCG
Found at i:76936571 original size:15 final size:15
Alignment explanation
Indices: 76936551--76936581 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76936541 ACTTTTTTAT
76936551 AAGCATAGAGTTGTG
1 AAGCATAGAGTTGTG
76936566 AAGCATAGAGTTGTG
1 AAGCATAGAGTTGTG
76936581 A
1 A
76936582 GTGTTACACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.26
Consensus pattern (15 bp):
AAGCATAGAGTTGTG
Found at i:76938902 original size:31 final size:31
Alignment explanation
Indices: 76938838--76938908 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
76938828 ATACATTGCT
* *
76938838 GAATTTGATTTGTATATAGACATACATTGTC
1 GAATTTGATTCGTATATAGACATACATTATC
* * *
76938869 GAATTTGATTCGTATATGGATATATATTATC
1 GAATTTGATTCGTATATAGACATACATTATC
76938900 GAA-TTGATT
1 GAATTTGATT
76938909 TGAGCATTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 6 0.17
31 29 0.83
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.44
Consensus pattern (31 bp):
GAATTTGATTCGTATATAGACATACATTATC
Found at i:76939137 original size:41 final size:40
Alignment explanation
Indices: 76939031--76939153 Score: 138
Period size: 43 Copynumber: 3.0 Consensus size: 40
76939021 GAGATGTGAT
*
76939031 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGAGGA
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCG-A-T-ATGA
**
76939074 AACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGA
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCG-ATATGA
* * * * *
76939115 TTCGTATAAGACCCTATCTGGGATAGTGGCATCGATATG
1 TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
76939154 CGTTAACATG
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
40 5 0.07
41 30 0.43
42 1 0.01
43 33 0.48
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (40 bp):
TTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
Found at i:76946143 original size:16 final size:15
Alignment explanation
Indices: 76946122--76946156 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
76946112 TAAAATCTTG
76946122 TATATCTAGATAAAAA
1 TATATCTAGA-AAAAA
*
76946138 TATATCTATAAAAAA
1 TATATCTAGAAAAAA
76946153 TATA
1 TATA
76946157 GACAATAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (15 bp):
TATATCTAGAAAAAA
Found at i:76954458 original size:3 final size:3
Alignment explanation
Indices: 76954450--76954497 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
76954440 CATTAAATTC
* *
76954450 TAT TAT TAT TAT TAC TAT T-T T-T TAT TTT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
76954496 TA
1 TA
76954498 GAATTCGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 4 0.10
3 36 0.90
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:76955088 original size:23 final size:24
Alignment explanation
Indices: 76955040--76955088 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
76955030 TGAAAAATAT
* *
76955040 ATTATTTTTTATCCTAGTCTATTC
1 ATTATTTTTTATCCTAGTCAAATC
76955064 ATTATTTTATT-T-CTAGTCAAATC
1 ATTATTTT-TTATCCTAGTCAAATC
76955087 AT
1 AT
76955089 ATCAGAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 11 0.50
24 9 0.41
25 2 0.09
ACGTcount: A:0.27, C:0.14, G:0.04, T:0.55
Consensus pattern (24 bp):
ATTATTTTTTATCCTAGTCAAATC
Found at i:76958929 original size:30 final size:30
Alignment explanation
Indices: 76958895--76958953 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
76958885 GAAAATTCTT
*
76958895 AAGGAAATCTTTATAAAAAATTTTATATTA
1 AAGGAAATCTTTATAAAAAAATTTATATTA
76958925 AAGGAAATCTTTATAAAAAAATTTATATT
1 AAGGAAATCTTTATAAAAAAATTTATATT
76958954 TGTTTCCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (30 bp):
AAGGAAATCTTTATAAAAAAATTTATATTA
Found at i:76959618 original size:6 final size:6
Alignment explanation
Indices: 76959609--76959771 Score: 114
Period size: 6 Copynumber: 27.2 Consensus size: 6
76959599 ATTTAGGGTT
* * * * * *
76959609 ATTTCG ATTTCA ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTCG
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
* * * * * **
76959657 ATTTCG ATTTCG ATTTTG ATTTTG ATTTTG ATTTCA ATTTTG A-AAC-
1 ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
** * * * *
76959703 ACTCACTG ATTTTG ATTTTG ATTTTG ATTTCA ATTTCG ATTTCG ATTTCG
1 A-TTTC-G ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG ATTTCG
*
76959753 ATTTCG ATTTTG ATTTCG A
1 ATTTCG ATTTCG ATTTCG A
76959772 ATTGGATTTT
Statistics
Matches: 132, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
4 1 0.01
6 129 0.98
7 1 0.01
8 1 0.01
ACGTcount: A:0.21, C:0.10, G:0.14, T:0.55
Consensus pattern (6 bp):
ATTTCG
Found at i:76959629 original size:12 final size:12
Alignment explanation
Indices: 76959609--76959771 Score: 155
Period size: 12 Copynumber: 13.1 Consensus size: 12
76959599 ATTTAGGGTT
* *
76959609 ATTTCGATTTCA
1 ATTTTGATTTCG
*
76959621 ATTTTGATTTTG
1 ATTTTGATTTCG
*
76959633 ATTTTGATTTTG
1 ATTTTGATTTCG
76959645 ATTTTGATTTCG
1 ATTTTGATTTCG
*
76959657 ATTTCGATTTCG
1 ATTTTGATTTCG
*
76959669 ATTTTGATTTTG
1 ATTTTGATTTCG
*
76959681 ATTTTGATTTCA
1 ATTTTGATTTCG
**
76959693 ATTTTGAAACACTCACTG
1 ATTTTG----A-TTTC-G
*
76959711 ATTTTGATTTTG
1 ATTTTGATTTCG
*
76959723 ATTTTGATTTCA
1 ATTTTGATTTCG
*
76959735 ATTTCGATTTCG
1 ATTTTGATTTCG
*
76959747 ATTTCGATTTCG
1 ATTTTGATTTCG
76959759 ATTTTGATTTCG
1 ATTTTGATTTCG
76959771 A
1 A
76959772 ATTGGATTTT
Statistics
Matches: 125, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
12 114 0.91
13 1 0.01
14 1 0.01
16 1 0.01
17 2 0.02
18 6 0.05
ACGTcount: A:0.21, C:0.10, G:0.14, T:0.55
Consensus pattern (12 bp):
ATTTTGATTTCG
Found at i:76959635 original size:18 final size:18
Alignment explanation
Indices: 76959609--76959784 Score: 154
Period size: 18 Copynumber: 9.4 Consensus size: 18
76959599 ATTTAGGGTT
* *
76959609 ATTTCGATTTCAATTTTG
1 ATTTTGATTTCGATTTTG
*
76959627 ATTTTGATTTTGATTTTG
1 ATTTTGATTTCGATTTTG
*
76959645 ATTTTGATTTCGATTTCG
1 ATTTTGATTTCGATTTTG
* *
76959663 ATTTCGATTTTGATTTTG
1 ATTTTGATTTCGATTTTG
*
76959681 ATTTTGATTTCAATTTTG
1 ATTTTGATTTCGATTTTG
** *
76959699 AAACACTCACTGATTTTGATTTTG
1 ----A-T-TTTGATTTCGATTTTG
* *
76959723 ATTTTGATTTCAATTTCG
1 ATTTTGATTTCGATTTTG
* *
76959741 ATTTCGATTTCGATTTCG
1 ATTTTGATTTCGATTTTG
* *
76959759 ATTTTGATTTCGAATTGG
1 ATTTTGATTTCGATTTTG
76959777 ATTTTGAT
1 ATTTTGAT
76959785 CTAGGGTTAT
Statistics
Matches: 127, Mismatches: 25, Indels: 12
0.77 0.15 0.07
Matches are distributed among these distances:
18 111 0.87
19 1 0.01
20 1 0.01
22 1 0.01
23 1 0.01
24 12 0.09
ACGTcount: A:0.21, C:0.09, G:0.15, T:0.55
Consensus pattern (18 bp):
ATTTTGATTTCGATTTTG
Found at i:76965628 original size:5 final size:5
Alignment explanation
Indices: 76965618--76965647 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
76965608 ATAAATGAAA
76965618 AGAGG AGAGG AGAGG AGAGG AGAGG AGAGG
1 AGAGG AGAGG AGAGG AGAGG AGAGG AGAGG
76965648 GAGAAAACTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (5 bp):
AGAGG
Found at i:76985299 original size:22 final size:22
Alignment explanation
Indices: 76985249--76985317 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 22
76985239 ACTTAAAATT
* *
76985249 TAAGTAAATAT-AT-ATAATAA
1 TAAGTAAATATAATAAAAAAAA
76985269 TAAAGTAAATATAATAAAAAAAA
1 T-AAGTAAATATAATAAAAAAAA
*
76985292 TAAGTAAATGA-AATAAAGAAAGA
1 TAAGTAAAT-ATAATAAA-AAAAA
76985315 TAA
1 TAA
76985318 AAGCAAAATC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
20 1 0.02
21 10 0.24
22 16 0.39
23 14 0.34
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.25
Consensus pattern (22 bp):
TAAGTAAATATAATAAAAAAAA
Found at i:76987810 original size:31 final size:31
Alignment explanation
Indices: 76987753--76987811 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
76987743 GTTATACTAG
*
76987753 TAACTAAAATAAAAACTTTTGAATAATTCAA
1 TAACTAAAATAAAAACTTTCGAATAATTCAA
* * *
76987784 TAACTTAAATAAAAAGTTTCGTATAATT
1 TAACTAAAATAAAAACTTTCGAATAATT
76987812 TAATGACCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.36
Consensus pattern (31 bp):
TAACTAAAATAAAAACTTTCGAATAATTCAA
Found at i:76988334 original size:20 final size:21
Alignment explanation
Indices: 76988294--76988335 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
76988284 CTATTTTTTA
76988294 TTATATTTTATAATATATTTG
1 TTATATTTTATAATATATTTG
*
76988315 TTATATTTTA-AATTTATTTG
1 TTATATTTTATAATATATTTG
76988335 T
1 T
76988336 AGAGTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (21 bp):
TTATATTTTATAATATATTTG
Found at i:76990343 original size:49 final size:51
Alignment explanation
Indices: 76990269--76990411 Score: 145
Period size: 50 Copynumber: 2.9 Consensus size: 51
76990259 ATATAACGTA
* * * * *
76990269 AAGCTCATGAGAG-C-TGTAATTGGGAAGCTTATGCGAGCC-AATATCAGG
1 AAGCTCGTGAGAGCCATATAATCGGGAAGCTCATGAGAGCCAAATATCAGG
*
76990317 AAGCTCCG-GAGAGCCAT-TAATCGGGAAGCTCATGAGAGCCAAATATCGGG
1 AAGCT-CGTGAGAGCCATATAATCGGGAAGCTCATGAGAGCCAAATATCAGG
* * * *
76990367 AAGCTCGTGAGAGCCATATAAT-GAGATGCTCATAAGAGCTAAATA
1 AAGCTCGTGAGAGCCATATAATCGGGAAGCTCATGAGAGCCAAATA
76990412 ACGGGATGCT
Statistics
Matches: 80, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
48 10 0.12
49 24 0.30
50 42 0.52
51 4 0.05
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.20
Consensus pattern (51 bp):
AAGCTCGTGAGAGCCATATAATCGGGAAGCTCATGAGAGCCAAATATCAGG
Found at i:76990379 original size:50 final size:50
Alignment explanation
Indices: 76990289--76990422 Score: 148
Period size: 50 Copynumber: 2.7 Consensus size: 50
76990279 GAGCTGTAAT
* * *
76990289 TGGGAAGCTTATGCGAGCC-AATATCAGGAAGCTCCG-GAGAGCCAT-TAA
1 TGGGAAGCTCATGAGAGCCAAATATCGGGAAGCT-CGTGAGAGCCATATAA
76990337 TCGGGAAGCTCATGAGAGCCAAATATCGGGAAGCTCGTGAGAGCCATATAA
1 T-GGGAAGCTCATGAGAGCCAAATATCGGGAAGCTCGTGAGAGCCATATAA
* * * * * *
76990388 TGAGATGCTCATAAGAGCTAAATAACGGGATGCTC
1 TGGGAAGCTCATGAGAGCCAAATATCGGGAAGCTC
76990423 TTGCGAGCTG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
48 1 0.01
49 18 0.25
50 50 0.68
51 4 0.05
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.19
Consensus pattern (50 bp):
TGGGAAGCTCATGAGAGCCAAATATCGGGAAGCTCGTGAGAGCCATATAA
Found at i:76990397 original size:25 final size:26
Alignment explanation
Indices: 76990240--76990422 Score: 123
Period size: 25 Copynumber: 7.4 Consensus size: 26
76990230 AGCATGTAAA
* **
76990240 CGGGAAGCTCTTTTGAGCCATATAA-
1 CGGGAAGCTCATGAGAGCCATATAAT
** *
76990265 CGTAAAGCTCATGAGAG-C-TGTAAT
1 CGGGAAGCTCATGAGAGCCATATAAT
* * *
76990289 TGGGAAGCTTATGCGAGCCA-AT-AT
1 CGGGAAGCTCATGAGAGCCATATAAT
* **
76990313 CAGGAAGCTCCGGAGAGCCAT-TAAT
1 CGGGAAGCTCATGAGAGCCATATAAT
*
76990338 CGGGAAGCTCATGAGAGCCAAAT-AT
1 CGGGAAGCTCATGAGAGCCATATAAT
*
76990363 CGGGAAGCTCGTGAGAGCCATATAAT
1 CGGGAAGCTCATGAGAGCCATATAAT
* * * * *
76990389 -GAGATGCTCATAAGAGCTAAATAA-
1 CGGGAAGCTCATGAGAGCCATATAAT
*
76990413 CGGGATGCTC
1 CGGGAAGCTC
76990423 TTGCGAGCTG
Statistics
Matches: 119, Mismatches: 31, Indels: 16
0.72 0.19 0.10
Matches are distributed among these distances:
23 4 0.03
24 30 0.25
25 82 0.69
26 3 0.03
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.21
Consensus pattern (26 bp):
CGGGAAGCTCATGAGAGCCATATAAT
Found at i:76990771 original size:21 final size:21
Alignment explanation
Indices: 76990747--76990788 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
76990737 TGAATTTAGC
* *
76990747 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATACATAT
*
76990768 TCAATTCAATCCAATACATAT
1 TCAATTCAATACAATACATAT
76990789 CTTTGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATACATAT
Found at i:76996337 original size:25 final size:25
Alignment explanation
Indices: 76996221--76996375 Score: 126
Period size: 25 Copynumber: 6.3 Consensus size: 25
76996211 AAACTATTTC
*
76996221 GAGCCATATAAT-GGGAAGCTCATGA
1 GAGCCAT-TAATCGGAAAGCTCATGA
* * *
76996246 GAG--TTGTAATCGGGAAGCTCATGC
1 GAGCCAT-TAATCGGAAAGCTCATGA
* *
76996270 GAGCCAAT-ATCGGGAAGCTTCA-GA
1 GAGCCATTAATCGGAAAGC-TCATGA
* *
76996294 GAGCCATTAAAC-GAGAAGCTCGTGA
1 GAGCCATTAATCGGA-AAGCTCATGA
*
76996319 GAGCCATTAATCGGAAAGCTCGTGA
1 GAGCCATTAATCGGAAAGCTCATGA
*
76996344 GAGCCA-AATATCGGAAAGCTCATGA
1 GAGCCATTA-ATCGGAAAGCTCATGA
76996369 GAGCCAT
1 GAGCCAT
76996376 ATAACGAGAT
Statistics
Matches: 107, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
23 5 0.05
24 37 0.35
25 63 0.59
26 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (25 bp):
GAGCCATTAATCGGAAAGCTCATGA
Found at i:76996373 original size:75 final size:74
Alignment explanation
Indices: 76996221--76996389 Score: 193
Period size: 75 Copynumber: 2.3 Consensus size: 74
76996211 AAACTATTTC
* * * * * * *
76996221 GAGCCATATAATGGGAAGCTCATGAGAG--TTGTAATCGGGAAGCTCATGCGAGCCAATATCGGG
1 GAGCCATATAACGAGAAGCTCGTGAGAGCCAT-TAATCGGAAAGCTCATGAGAGCCAATATCGGA
76996284 AAGCTTCAGA
65 AAGCTTCAGA
*
76996294 GAGCCAT-TAAACGAGAAGCTCGTGAGAGCCATTAATCGGAAAGCTCGTGAGAGCCAAATATCGG
1 GAGCCATAT-AACGAGAAGCTCGTGAGAGCCATTAATCGGAAAGCTCATGAGAGCC-AATATCGG
76996358 AAAGC-TCATGA
64 AAAGCTTCA-GA
*
76996369 GAGCCATATAACGAGATGCTC
1 GAGCCATATAACGAGAAGCTC
76996390 ATAAGAGCTA
Statistics
Matches: 81, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
72 1 0.01
73 23 0.28
74 23 0.28
75 33 0.41
76 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.28, T:0.19
Consensus pattern (74 bp):
GAGCCATATAACGAGAAGCTCGTGAGAGCCATTAATCGGAAAGCTCATGAGAGCCAATATCGGAA
AGCTTCAGA
Found at i:76996389 original size:25 final size:24
Alignment explanation
Indices: 76996221--76996397 Score: 114
Period size: 25 Copynumber: 7.2 Consensus size: 24
76996211 AAACTATTTC
*
76996221 GAGCCATATAATGGGAAGCTCATGA
1 GAGCCATATAA-CGGAAGCTCATGA
* * *
76996246 GAG--TTGTAATCGGGAAGCTCATGC
1 GAGCCATATAA-C-GGAAGCTCATGA
*
76996270 GAGCCA-ATATCGGGAAGCTTCA-GA
1 GAGCCATATAAC-GGAAGC-TCATGA
*
76996294 GAGCCAT-TAAACGAGAAGCTCGTGA
1 GAGCCATAT-AACG-GAAGCTCATGA
*
76996319 GAGCCAT-TAATCGGAAAGCTCGTGA
1 GAGCCATATAA-CGG-AAGCTCATGA
* *
76996344 GAGCCAAATATCGGAAAGCTCATGA
1 GAGCCATATAACGG-AAGCTCATGA
* *
76996369 GAGCCATATAACGAGATGCTCATAA
1 GAGCCATATAACG-GAAGCTCATGA
76996394 GAGC
1 GAGC
76996398 TAAATAATAG
Statistics
Matches: 123, Mismatches: 17, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
23 5 0.04
24 36 0.29
25 79 0.64
26 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (24 bp):
GAGCCATATAACGGAAGCTCATGA
Found at i:76998416 original size:26 final size:27
Alignment explanation
Indices: 76998367--76998438 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 27
76998357 AATTTATTAG
* *
76998367 TAATAAAATTTTAATTAAGTA-TTTAA
1 TAATAATATTTTAATTGAGTATTTTAA
76998393 TAATAATATTTTAATTGA-TAATTTTTAA
1 TAATAATATTTTAATTGAGT-A-TTTTAA
*
76998421 -AATTATTATTTTAATTGA
1 TAA-TAATATTTTAATTGA
76998439 AAATAAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
25 1 0.03
26 17 0.44
27 2 0.05
28 19 0.49
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (27 bp):
TAATAATATTTTAATTGAGTATTTTAA
Found at i:77001701 original size:22 final size:22
Alignment explanation
Indices: 77001676--77001719 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
77001666 TTTATATCAT
77001676 ATAT-TGATTAAATAAAATAAAA
1 ATATGTGATTAAAT-AAATAAAA
*
77001698 ATATGTTATTAAATAAATAAAA
1 ATATGTGATTAAATAAATAAAA
77001720 TAATTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (22 bp):
ATATGTGATTAAATAAATAAAA
Found at i:77004271 original size:38 final size:38
Alignment explanation
Indices: 77004238--77004316 Score: 122
Period size: 38 Copynumber: 2.1 Consensus size: 38
77004228 CATGTTCAAT
77004238 ATGCCTACTATTACTATTGAACTGAATACATGTTAAGC
1 ATGCCTACTATTACTATTGAACTGAATACATGTTAAGC
* * * *
77004276 ATGCCTACTGTTACTGTTGAACTTAATACATGTTACGC
1 ATGCCTACTATTACTATTGAACTGAATACATGTTAAGC
77004314 ATG
1 ATG
77004317 TTTAATGCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (38 bp):
ATGCCTACTATTACTATTGAACTGAATACATGTTAAGC
Found at i:77004332 original size:38 final size:38
Alignment explanation
Indices: 77004249--77004345 Score: 113
Period size: 38 Copynumber: 2.6 Consensus size: 38
77004239 TGCCTACTAT
* * * *
77004249 TACTATTGAACTGAATACATGTTAAGCATGCCTACTGT
1 TACTGTTGAACTAAATACATGTTAAGCATGCCTAATGC
* * **
77004287 TACTGTTGAACTTAATACATGTTACGCATGTTTAATGC
1 TACTGTTGAACTAAATACATGTTAAGCATGCCTAATGC
*
77004325 TATTGTTGAACTAAATACATG
1 TACTGTTGAACTAAATACATG
77004346 ATAAAACATG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (38 bp):
TACTGTTGAACTAAATACATGTTAAGCATGCCTAATGC
Found at i:77012261 original size:139 final size:139
Alignment explanation
Indices: 77012011--77012284 Score: 548
Period size: 139 Copynumber: 2.0 Consensus size: 139
77012001 TCTGACACCA
77012011 CTGTTGGATCGCCGGCACCCCTATGGCGCAGTGAAAAATAAAAATTCGGAGATCCTAACCAGGGA
1 CTGTTGGATCGCCGGCACCCCTATGGCGCAGTGAAAAATAAAAATTCGGAGATCCTAACCAGGGA
77012076 TCCATGTGTGAGGAACGAATCGTGGTGAAAGAGGTTGCGAAATTACCTAATGTTTATTCAGAGTA
66 TCCATGTGTGAGGAACGAATCGTGGTGAAAGAGGTTGCGAAATTACCTAATGTTTATTCAGAGTA
77012141 GACAGAGAG
131 GACAGAGAG
77012150 CTGTTGGATCGCCGGCACCCCTATGGCGCAGTGAAAAATAAAAATTCGGAGATCCTAACCAGGGA
1 CTGTTGGATCGCCGGCACCCCTATGGCGCAGTGAAAAATAAAAATTCGGAGATCCTAACCAGGGA
77012215 TCCATGTGTGAGGAACGAATCGTGGTGAAAGAGGTTGCGAAATTACCTAATGTTTATTCAGAGTA
66 TCCATGTGTGAGGAACGAATCGTGGTGAAAGAGGTTGCGAAATTACCTAATGTTTATTCAGAGTA
77012280 GACAG
131 GACAG
77012285 CAACACCTCA
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
139 135 1.00
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.23
Consensus pattern (139 bp):
CTGTTGGATCGCCGGCACCCCTATGGCGCAGTGAAAAATAAAAATTCGGAGATCCTAACCAGGGA
TCCATGTGTGAGGAACGAATCGTGGTGAAAGAGGTTGCGAAATTACCTAATGTTTATTCAGAGTA
GACAGAGAG
Found at i:77018298 original size:52 final size:52
Alignment explanation
Indices: 77018230--77018333 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
77018220 GCAGATATGC
* * *
77018230 AAAGTCCTGCCTCTATCCTCTACACACCAACTCCGATCATCCCAACGCACCA
1 AAAGTCCTACCCCTATCCTCTACACACCAACTCCGACCATCCCAACGCACCA
77018282 AAAGTCCTACCCCTATCCTCTACACACCAACTCCGACCATCCCAACGCACCA
1 AAAGTCCTACCCCTATCCTCTACACACCAACTCCGACCATCCCAACGCACCA
77018334 CATGGGGTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.30, C:0.46, G:0.07, T:0.17
Consensus pattern (52 bp):
AAAGTCCTACCCCTATCCTCTACACACCAACTCCGACCATCCCAACGCACCA
Found at i:77018332 original size:23 final size:23
Alignment explanation
Indices: 77018254--77018333 Score: 61
Period size: 23 Copynumber: 3.2 Consensus size: 23
77018244 ATCCTCTACA
*
77018254 CACCAACTCCGATCATCCCAACG
1 CACCAACTCCGACCATCCCAACG
* * * *
77018277 CACCAAAAGTCCTACCCCTATCCTCTACA
1 CACC--AACTCCGA--CC-ATCC-CAACG
77018306 CACCAACTCCGACCATCCCAACG
1 CACCAACTCCGACCATCCCAACG
77018329 CACCA
1 CACCA
77018334 CATGGGGTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
23 12 0.29
24 4 0.10
25 8 0.19
27 7 0.17
28 4 0.10
29 7 0.17
ACGTcount: A:0.31, C:0.49, G:0.06, T:0.14
Consensus pattern (23 bp):
CACCAACTCCGACCATCCCAACG
Found at i:77020827 original size:15 final size:16
Alignment explanation
Indices: 77020809--77020843 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
77020799 AAAATAACGG
77020809 TTGAAAAAT-TAAGTA
1 TTGAAAAATGTAAGTA
77020824 TTG-AAAATGTAAGTA
1 TTGAAAAATGTAAGTA
77020839 TTGAA
1 TTGAA
77020844 TTTAAGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 5 0.28
15 12 0.67
16 1 0.06
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (16 bp):
TTGAAAAATGTAAGTA
Found at i:77021209 original size:107 final size:107
Alignment explanation
Indices: 77021046--77021242 Score: 394
Period size: 107 Copynumber: 1.8 Consensus size: 107
77021036 ACTAAATAAA
77021046 ATAGAAATTAAATTAATTAAAAATATTCTCTATTAAATGATAAGTAGTTCTTATCTTGTTATTAT
1 ATAGAAATTAAATTAATTAAAAATATTCTCTATTAAATGATAAGTAGTTCTTATCTTGTTATTAT
77021111 TTTTCACACTTTTTTAACAAATATTACGAAGGAGGCAAGATC
66 TTTTCACACTTTTTTAACAAATATTACGAAGGAGGCAAGATC
77021153 ATAGAAATTAAATTAATTAAAAATATTCTCTATTAAATGATAAGTAGTTCTTATCTTGTTATTAT
1 ATAGAAATTAAATTAATTAAAAATATTCTCTATTAAATGATAAGTAGTTCTTATCTTGTTATTAT
77021218 TTTTCACACTTTTTTAACAAATATT
66 TTTTCACACTTTTTTAACAAATATT
77021243 TCTATCGAGT
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 90 1.00
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (107 bp):
ATAGAAATTAAATTAATTAAAAATATTCTCTATTAAATGATAAGTAGTTCTTATCTTGTTATTAT
TTTTCACACTTTTTTAACAAATATTACGAAGGAGGCAAGATC
Found at i:77025382 original size:17 final size:18
Alignment explanation
Indices: 77025360--77025393 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
77025350 CAATAAGCAT
77025360 TTATATAAA-TCAAACAC
1 TTATATAAACTCAAACAC
77025377 TTATATAAACTCAAACA
1 TTATATAAACTCAAACA
77025394 TTTCCATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (18 bp):
TTATATAAACTCAAACAC
Found at i:77025657 original size:42 final size:41
Alignment explanation
Indices: 77025611--77025733 Score: 151
Period size: 42 Copynumber: 3.0 Consensus size: 41
77025601 ATGCTATCAT
*
77025611 ATATCGATGCCAATAG-CCCAACTATGGTCTTACACAAATCTC
1 ATATCGATGCCAAT-GTCCCAAC-ATGGTCTTACACGAATCTC
* * *
77025653 ATATCAATGCAAATGTCCAAAACATGGTCTTACACGAATCTC
1 ATATCGATGCCAATGTCC-CAACATGGTCTTACACGAATCTC
*
77025695 ATATCGATGTCAATGTCCCAGA-ATGGTCTTACACGAATC
1 ATATCGATGCCAATGTCCCA-ACATGGTCTTACACGAATC
77025734 ACATCTCAGT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
41 19 0.27
42 48 0.69
43 3 0.04
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (41 bp):
ATATCGATGCCAATGTCCCAACATGGTCTTACACGAATCTC
Found at i:77027230 original size:17 final size:17
Alignment explanation
Indices: 77027208--77027255 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
77027198 AAGTTAGGCG
*
77027208 TGTGGGCCACACGTGCA
1 TGTGGGCCACACGGGCA
*
77027225 TGTGGGCTACACGGGCA
1 TGTGGGCCACACGGGCA
*
77027242 TGTAGGCCCACACG
1 TGT-GGGCCACACG
77027256 AATATGTGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.19, C:0.29, G:0.35, T:0.17
Consensus pattern (17 bp):
TGTGGGCCACACGGGCA
Found at i:77032282 original size:20 final size:20
Alignment explanation
Indices: 77032253--77032291 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
77032243 CTTTTACTGT
77032253 TCTTGCC-AAATCTTTGATAA
1 TCTTGCCAAAATC-TTGATAA
*
77032273 TCTTGTCAAAATCTTGATA
1 TCTTGCCAAAATCTTGATA
77032292 TCAATCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (20 bp):
TCTTGCCAAAATCTTGATAA
Found at i:77047295 original size:17 final size:16
Alignment explanation
Indices: 77047275--77047307 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
77047265 AATACTTCAG
77047275 TTTAAAAATTTAAAATT
1 TTTAAAAA-TTAAAATT
77047292 TTTAAAAATTAAAATT
1 TTTAAAAATTAAAATT
77047308 GCTTTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAAAAATTAAAATT
Found at i:77050216 original size:5 final size:5
Alignment explanation
Indices: 77050206--77050240 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
77050196 ATTTACCTCT
77050206 TACCA TACCA TACCA TACCA TACCA TACCA TACCA
1 TACCA TACCA TACCA TACCA TACCA TACCA TACCA
77050241 CCACCATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (5 bp):
TACCA
Found at i:77054072 original size:16 final size:17
Alignment explanation
Indices: 77054044--77054075 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
77054034 AGAGTTAAAA
77054044 TTAAAATTCTAAAATTT
1 TTAAAATTCTAAAATTT
77054061 TTAAAA-TCTAAAATT
1 TTAAAATTCTAAAATT
77054076 GATTAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAAATTCTAAAATTT
Found at i:77054081 original size:17 final size:16
Alignment explanation
Indices: 77054043--77054084 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
77054033 AAGAGTTAAA
77054043 ATTAAAATTCTAAAATT
1 ATTAAAA-TCTAAAATT
*
77054060 TTTAAAATCTAAAATT
1 ATTAAAATCTAAAATT
77054076 GATTAAAAT
1 -ATTAAAAT
77054085 AAATATGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (16 bp):
ATTAAAATCTAAAATT
Found at i:77054275 original size:18 final size:18
Alignment explanation
Indices: 77054252--77054287 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
77054242 TTGAATAAAT
77054252 TATTAAAAA-AAATAAAAA
1 TATTAAAAATAAA-AAAAA
77054270 TATTAAAAATAAAAAAAA
1 TATTAAAAATAAAAAAAA
77054288 CTAGTTCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
TATTAAAAATAAAAAAAA
Found at i:77054511 original size:26 final size:27
Alignment explanation
Indices: 77054482--77054532 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
77054472 ATACAATATA
* *
77054482 AATATTCA-AAATTTCATTTATACCAT
1 AATATCCACAAATTTAATTTATACCAT
*
77054508 AATATCCACAATTTTAATTTATACC
1 AATATCCACAAATTTAATTTATACC
77054533 TAAGTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (27 bp):
AATATCCACAAATTTAATTTATACCAT
Found at i:77054592 original size:18 final size:18
Alignment explanation
Indices: 77054563--77054627 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
77054553 AGCACAAATC
77054563 AAATTATCTGAATAAAAGA
1 AAATT-TCTGAATAAAAGA
*
77054582 AAATTTCTGAATAAAATA
1 AAATTTCTGAATAAAAGA
**
77054600 TTACAACATCTGAATAAAAGA
1 --A-AATTTCTGAATAAAAGA
77054621 AAATTTC
1 AAATTTC
77054628 AAGTAATAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
18 16 0.43
19 6 0.16
20 1 0.03
21 14 0.38
ACGTcount: A:0.54, C:0.09, G:0.08, T:0.29
Consensus pattern (18 bp):
AAATTTCTGAATAAAAGA
Found at i:77056033 original size:16 final size:16
Alignment explanation
Indices: 77056012--77056044 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
77056002 CGTGCTTGTG
77056012 TGATAAGTGAACTATC
1 TGATAAGTGAACTATC
77056028 TGATAAGTGAACTATC
1 TGATAAGTGAACTATC
77056044 T
1 T
77056045 TAGGGCTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33
Consensus pattern (16 bp):
TGATAAGTGAACTATC
Found at i:77058553 original size:33 final size:33
Alignment explanation
Indices: 77058489--77058553 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
77058479 AACTAAAATT
*
77058489 TGAAACAACTATTGTTTAGAATAATTGTGTTTC
1 TGAAACAACTATTGTTTAGAATAATCGTGTTTC
* *
77058522 TGAAATAACTA-TGTTTGGAATAATCGTTGTTT
1 TGAAACAACTATTGTTTAGAATAATCG-TGTTT
77058554 GGAACAACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (33 bp):
TGAAACAACTATTGTTTAGAATAATCGTGTTTC
Found at i:77059370 original size:15 final size:16
Alignment explanation
Indices: 77059352--77059382 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77059342 TTTAACTAAT
77059352 TAAAAT-AAAATAAAA
1 TAAAATAAAAATAAAA
77059367 TAAAATAAAAATAAAA
1 TAAAATAAAAATAAAA
77059383 GTTCCAATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
TAAAATAAAAATAAAA
Found at i:77059379 original size:6 final size:5
Alignment explanation
Indices: 77059352--77059382 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
77059342 TTTAACTAAT
77059352 TAAAA TAAAA TAAAA TAAAA TAAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA
77059383 GTTCCAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:77064000 original size:21 final size:23
Alignment explanation
Indices: 77063967--77064010 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
77063957 TGGTGGGCAA
*
77063967 GCATGGCGCGAGCA-AGGGCTGT
1 GCATGGCGAGAGCACAGGGCTGT
77063989 GCAT-GCGAGAGCAGCAGGGCTG
1 GCATGGCGAGAGCA-CAGGGCTG
77064011 GGACGCAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 4 0.21
23 7 0.37
ACGTcount: A:0.20, C:0.23, G:0.45, T:0.11
Consensus pattern (23 bp):
GCATGGCGAGAGCACAGGGCTGT
Found at i:77064275 original size:9 final size:9
Alignment explanation
Indices: 77064261--77064309 Score: 73
Period size: 9 Copynumber: 5.4 Consensus size: 9
77064251 TTTGGTTAAA
77064261 AATTAACCG
1 AATTAACCG
77064270 AATTAACCG
1 AATTAACCG
77064279 AATTAACCG
1 AATTAACCG
77064288 AATT-ACTCG
1 AATTAAC-CG
*
77064297 AATTACCCG
1 AATTAACCG
77064306 AATT
1 AATT
77064310 GAATCACTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 2 0.05
9 34 0.92
10 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.10, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:77064597 original size:39 final size:39
Alignment explanation
Indices: 77064510--77064626 Score: 182
Period size: 39 Copynumber: 3.0 Consensus size: 39
77064500 ACTTAAGAGT
*
77064510 TAGACTTTAGTTTTATTTTTATTGGGTT-GGTAATTGGG
1 TAGACTTTAGTTTTAATTTTATTGGGTTGGGTAATTGGG
* * *
77064548 TAGACTTTAGTTTTAGTTCTATTGGGTTGGGTAATTTGG
1 TAGACTTTAGTTTTAATTTTATTGGGTTGGGTAATTGGG
*
77064587 TAGACGTTAGTTTTAATTTTATTGGGTTGGGTAATTGGG
1 TAGACTTTAGTTTTAATTTTATTGGGTTGGGTAATTGGG
77064626 T
1 T
77064627 TGGGTTGGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 26 0.37
39 45 0.63
ACGTcount: A:0.19, C:0.03, G:0.28, T:0.50
Consensus pattern (39 bp):
TAGACTTTAGTTTTAATTTTATTGGGTTGGGTAATTGGG
Found at i:77064625 original size:13 final size:13
Alignment explanation
Indices: 77064607--77064631 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77064597 TTTTAATTTT
77064607 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
77064620 ATTGGGTTGGGT
1 ATTGGGTTGGGT
77064632 TGGGTAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:77065240 original size:16 final size:15
Alignment explanation
Indices: 77065215--77065248 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
77065205 AAAATTTATA
*
77065215 ATAATTAATATACATT
1 ATAATAAATATA-ATT
77065231 ATAATAAATATAATT
1 ATAATAAATATAATT
77065246 ATA
1 ATA
77065249 TATTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:77065369 original size:29 final size:29
Alignment explanation
Indices: 77065315--77065370 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
77065305 GCTTTTAAAG
* *
77065315 ATATTTACAAAAAGAGACAGCTAATTTCA
1 ATATTTACAAAAAGAGACACCAAATTTCA
77065344 ATATTTACAAAAAGA-ACAACCAAATTT
1 ATATTTACAAAAAGAGAC-ACCAAATTT
77065371 TGCAAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (29 bp):
ATATTTACAAAAAGAGACACCAAATTTCA
Found at i:77075072 original size:4 final size:4
Alignment explanation
Indices: 77075063--77075088 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
77075053 CAAATTATTG
77075063 ATTA ATTA ATTA ATTA ATTA ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA AT
77075089 CGAAGTTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:77076075 original size:30 final size:30
Alignment explanation
Indices: 77076034--77076113 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
77076024 GAGTAAGTTG
* *
77076034 CTCACACAAGCTGACATTATATCAGGGTTC
1 CTCAAACAAGCTGACATTATATCAAGGTTC
*** *
77076064 CTCAAACAAGCTGA-AACGTATCAAGGTTG
1 CTCAAACAAGCTGACATTATATCAAGGTTC
77076093 CTCAAACAAGCTGAC-TTATAT
1 CTCAAACAAGCTGACATTATAT
77076114 TAGGTTACCT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 27 0.68
30 13 0.32
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (30 bp):
CTCAAACAAGCTGACATTATATCAAGGTTC
Found at i:77087369 original size:36 final size:36
Alignment explanation
Indices: 77087276--77087369 Score: 152
Period size: 36 Copynumber: 2.6 Consensus size: 36
77087266 GCTGCAGGTT
* *
77087276 CTGGAGGAGGCTGCAATGGGTCTGGAACTAGTGGAG
1 CTGGTGGAGGCTGCAATGGGTTTGGAACTAGTGGAG
77087312 CTGGTGGAGGCTGCAATGGGTTTGGAACTAGTGGAG
1 CTGGTGGAGGCTGCAATGGGTTTGGAACTAGTGGAG
* *
77087348 CTGGTGGCGGCTGAAATGGGTT
1 CTGGTGGAGGCTGCAATGGGTT
77087370 AGGAGGGAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 54 1.00
ACGTcount: A:0.19, C:0.13, G:0.45, T:0.23
Consensus pattern (36 bp):
CTGGTGGAGGCTGCAATGGGTTTGGAACTAGTGGAG
Found at i:77091869 original size:22 final size:22
Alignment explanation
Indices: 77091841--77091884 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
77091831 TTTTGACAAA
77091841 GGCTTGTTTAAATGTCTGAATT
1 GGCTTGTTTAAATGTCTGAATT
77091863 GGCTTGTTTAAATGTCTGAATT
1 GGCTTGTTTAAATGTCTGAATT
77091885 AAATAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.23, T:0.45
Consensus pattern (22 bp):
GGCTTGTTTAAATGTCTGAATT
Found at i:77099857 original size:20 final size:19
Alignment explanation
Indices: 77099824--77099862 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
77099814 CATAATTGCC
77099824 CACAATATACATATATATA
1 CACAATATACATATATATA
*
77099843 CACACATATATATATATATA
1 CACA-ATATACATATATATA
77099863 TCATAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.33
Consensus pattern (19 bp):
CACAATATACATATATATA
Found at i:77102799 original size:34 final size:35
Alignment explanation
Indices: 77102735--77102805 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 35
77102725 AACAAGACTT
*
77102735 TTGCTACTGCATTGATCTATCATAAACATGTC-TA
1 TTGCTACTGCATTGATATATCATAAACATGTCATA
* * * *
77102769 TTGCTACTGTATTGATATGTTATAATCATGTCATA
1 TTGCTACTGCATTGATATATCATAAACATGTCATA
77102804 TT
1 TT
77102806 ACATTGCATG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
34 27 0.87
35 4 0.13
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (35 bp):
TTGCTACTGCATTGATATATCATAAACATGTCATA
Found at i:77105440 original size:16 final size:16
Alignment explanation
Indices: 77105416--77105446 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77105406 ATACTATATT
*
77105416 TAATCAAATTATTTTA
1 TAATAAAATTATTTTA
77105432 TAATAAAATTATTTT
1 TAATAAAATTATTTT
77105447 TTATGATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATAAAATTATTTTA
Found at i:77105711 original size:15 final size:15
Alignment explanation
Indices: 77105688--77105717 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77105678 AACTAATTTT
*
77105688 TTAATTAAAATAATA
1 TTAAATAAAATAATA
77105703 TTAAATAAAATAATA
1 TTAAATAAAATAATA
77105718 ATAATTACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAATAAAATAATA
Found at i:77105780 original size:17 final size:18
Alignment explanation
Indices: 77105748--77105781 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77105738 TTTATATTTT
77105748 ATATTGTTCTTAAATAAA
1 ATATTGTTCTTAAATAAA
*
77105766 ATATTTTTC-TAAATAA
1 ATATTGTTCTTAAATAA
77105782 TAATTAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (18 bp):
ATATTGTTCTTAAATAAA
Found at i:77112330 original size:10 final size:9
Alignment explanation
Indices: 77112306--77112340 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
77112296 GAGTTTAAAA
77112306 ATAAAAATT
1 ATAAAAATT
77112315 ATAAAAATT
1 ATAAAAATT
*
77112324 ATAAAAAAT
1 ATAAAAATT
*
77112333 ATACAAAT
1 ATAAAAAT
77112341 CATGTTAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (9 bp):
ATAAAAATT
Found at i:77113702 original size:23 final size:23
Alignment explanation
Indices: 77113674--77113721 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
77113664 ATTGGGCTAG
*
77113674 GGTTTAATGGGTAATTCGGGTTA
1 GGTTTAATGAGTAATTCGGGTTA
* * *
77113697 GGTTTAGTTAGTATTTCGGGTTA
1 GGTTTAATGAGTAATTCGGGTTA
77113720 GG
1 GG
77113722 GTATTTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.04, G:0.35, T:0.42
Consensus pattern (23 bp):
GGTTTAATGAGTAATTCGGGTTA
Found at i:77113941 original size:42 final size:40
Alignment explanation
Indices: 77113867--77113974 Score: 153
Period size: 42 Copynumber: 2.6 Consensus size: 40
77113857 TTACACTGGT
* *
77113867 TAACATCCTTTTCAATCTTTTCATTTGTTATCCTTTTCAGA
1 TAACTTCCTTTTCAA-CTTTTCATTTATTATCCTTTTCAGA
*
77113908 TAACTTCCTTTTCAACCTTTTTCATTTATTATCCTTTTCGGA
1 TAACTTCCTTTTCAA-C-TTTTCATTTATTATCCTTTTCAGA
77113950 TAACTTCCTTTTCAACATTTTCATT
1 TAACTTCCTTTTCAAC-TTTTCATT
77113975 GATTCAGAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 24 0.39
42 37 0.61
ACGTcount: A:0.21, C:0.23, G:0.04, T:0.52
Consensus pattern (40 bp):
TAACTTCCTTTTCAACTTTTCATTTATTATCCTTTTCAGA
Found at i:77120297 original size:17 final size:18
Alignment explanation
Indices: 77120272--77120305 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
77120262 TAAATTGAGT
*
77120272 TCATTTTAG-TTAATAAC
1 TCATCTTAGATTAATAAC
77120289 TCATCTTAGATTAATAA
1 TCATCTTAGATTAATAA
77120306 ATGAGTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (18 bp):
TCATCTTAGATTAATAAC
Found at i:77126509 original size:31 final size:32
Alignment explanation
Indices: 77126473--77126537 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
77126463 CTTAGATAAT
77126473 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
77126504 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
77126536 TT
1 TT
77126538 GTAATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:77126849 original size:4 final size:4
Alignment explanation
Indices: 77126840--77126870 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
77126830 ATCTATCCTT
77126840 TTTA TTTA TTTA TTTA TTTA TTTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
77126871 ACTAATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:77142197 original size:18 final size:19
Alignment explanation
Indices: 77142171--77142207 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
77142161 CCCACCTTCT
*
77142171 CTTTCCTCCTCCCC-CCTC
1 CTTTACTCCTCCCCTCCTC
77142189 CTTTACTCCTCCCCTCCTC
1 CTTTACTCCTCCCCTCCTC
77142208 TTTCCCCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.03, C:0.62, G:0.00, T:0.35
Consensus pattern (19 bp):
CTTTACTCCTCCCCTCCTC
Found at i:77142210 original size:18 final size:17
Alignment explanation
Indices: 77142169--77142210 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
77142159 CACCCACCTT
*
77142169 CTCTTTCCTCCTCCCCC
1 CTCTTTACTCCTCCCCC
77142186 CTCCTTTACTCCTCCCCTC
1 CT-CTTTACTCCTCCCC-C
77142205 CTCTTT
1 CTCTTT
77142211 CCCCAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 2 0.09
18 17 0.77
19 3 0.14
ACGTcount: A:0.02, C:0.57, G:0.00, T:0.40
Consensus pattern (17 bp):
CTCTTTACTCCTCCCCC
Found at i:77142701 original size:1 final size:1
Alignment explanation
Indices: 77142695--77142724 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
77142685 TTAACTCTTC
*
77142695 TTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
77142725 GAGATGAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:77142707 original size:12 final size:12
Alignment explanation
Indices: 77142692--77142724 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
77142682 CTTTTAACTC
77142692 TTCTTTTTTTTT
1 TTCTTTTTTTTT
77142704 TTCTTTTTTTTT
1 TTCTTTTTTTTT
77142716 TT-TTTTTTT
1 TTCTTTTTTT
77142725 GAGATGAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.33
12 14 0.67
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:77142708 original size:15 final size:14
Alignment explanation
Indices: 77142690--77142724 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
77142680 TTCTTTTAAC
77142690 TCTTCTTTTTTTTTT
1 TCTT-TTTTTTTTTT
77142705 TCTTTTTTTTTTTT
1 TCTTTTTTTTTTTT
77142719 T-TTTTT
1 TCTTTTT
77142725 GAGATGAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.25
14 11 0.55
15 4 0.20
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (14 bp):
TCTTTTTTTTTTTT
Found at i:77146658 original size:43 final size:42
Alignment explanation
Indices: 77146572--77146675 Score: 154
Period size: 43 Copynumber: 2.5 Consensus size: 42
77146562 CCGAGATTAT
* *
77146572 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGAATTC
1 GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGAATTC
* *
77146614 GTGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTTC
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGATATGAGAATTC
*
77146657 GTGTAAGACCATGACTGGG
1 GTGTAAGACCATGTCTGGG
77146676 CTATTAACAT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 20 0.36
43 36 0.64
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGAATTC
Found at i:77146718 original size:43 final size:42
Alignment explanation
Indices: 77146563--77146727 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 42
77146553 TTAGGGTTAC
*
77146563 CGAGATTATGTGTAAGACCATATCTGGGATA-TGGCATCGATA
1 CGAGATT-TGTGTAAGACCATATCTGGGCTATTGGCATCGATA
* * *
77146605 TGAGAATTCGTGTAAGACCATGTCTGGGAC-ATTGGCATCGATA
1 CGAG-ATTTGTGTAAGACCATATCTGGG-CTATTGGCATCGATA
* * **
77146648 TGTGATTTCGTGTAAGACCATGA-CTGGGCTATTAACATCGATA
1 CGAGATTT-GTGTAAGACCAT-ATCTGGGCTATTGGCATCGATA
* * *
77146691 CGAGATTATATGTAAGATCATATCTGGGATA-TGGCAT
1 CGAGATT-TGTGTAAGACCATATCTGGGCTATTGGCAT
77146728 TGTTACGGTA
Statistics
Matches: 99, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
42 31 0.31
43 67 0.68
44 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
CGAGATTTGTGTAAGACCATATCTGGGCTATTGGCATCGATA
Found at i:77149350 original size:68 final size:69
Alignment explanation
Indices: 77149223--77149351 Score: 215
Period size: 69 Copynumber: 1.9 Consensus size: 69
77149213 ATTTAACAAA
* *
77149223 TTTTTTTCTCTCATTTTCTCTCTTTCCAAACACCACTTTTTTTTATTCAAAACACATGGTTGCTG
1 TTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTTCTTATTCAAAACACATGGTTGCTG
77149288 CTAT
66 CTAT
* *
77149292 TTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCA-TTTTTCTTCTTCAAAACATATGGTT
1 TTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTTCTTATTCAAAACACATGGTT
77149352 AGCTCATTTC
Statistics
Matches: 56, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
68 22 0.39
69 34 0.61
ACGTcount: A:0.20, C:0.25, G:0.05, T:0.50
Consensus pattern (69 bp):
TTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTTCTTATTCAAAACACATGGTTGCTG
CTAT
Found at i:77149528 original size:21 final size:21
Alignment explanation
Indices: 77149488--77149543 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
77149478 TTTTCTCTCA
*
77149488 TTTTCTCTCTTGCCAAACACCAT
1 TTTTCT-TCTT-CAAAACACCAT
77149511 TTTTCTTCTTCAAAACACCAT
1 TTTTCTTCTTCAAAACACCAT
77149532 TTTTCTTCTTCA
1 TTTTCTTCTTCA
77149544 CTACCTAACC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 22 0.69
22 4 0.12
23 6 0.19
ACGTcount: A:0.21, C:0.30, G:0.02, T:0.46
Consensus pattern (21 bp):
TTTTCTTCTTCAAAACACCAT
Found at i:77166813 original size:90 final size:90
Alignment explanation
Indices: 77166648--77166814 Score: 205
Period size: 90 Copynumber: 1.9 Consensus size: 90
77166638 TAATATGTTG
* * * * * *
77166648 CCAGATGGTTGTGAATACACAACATAAATGCATATGAGAGTTGTTAGATAATGAGTGGGTGAACT
1 CCAGATGGTTCTGAATACACAACATAAATGCAAATAAAAGTTGTTAGATAATGAGTGGATGAACC
*
77166713 GCCAGTATTGCAGGTTAATACACTA
66 ACCAGTATTGCAGGTTAATACACTA
* *
77166738 CCAGATGGTTCTGAATACACAACTTAATTGCAAATAAAAGTTGTT-GTATAAT-ATGTGGATGAA
1 CCAGATGGTTCTGAATACACAACATAAATGCAAATAAAAGTTGTTAG-ATAATGA-GTGGATGAA
77166801 CCACCA-TAATTGCA
64 CCACCAGT-ATTGCA
77166815 AATTAATATT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
89 3 0.05
90 62 0.95
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (90 bp):
CCAGATGGTTCTGAATACACAACATAAATGCAAATAAAAGTTGTTAGATAATGAGTGGATGAACC
ACCAGTATTGCAGGTTAATACACTA
Found at i:77166832 original size:90 final size:91
Alignment explanation
Indices: 77166612--77166832 Score: 204
Period size: 90 Copynumber: 2.5 Consensus size: 91
77166602 CACACCAGGT
* * *
77166612 TGTGGATAAACCA-CA-AAGTTG-AAAGTTAATATGTTGCCAGATGGTTGTGAATACACAACATA
1 TGTGGATGAACCACCATAA-TTGCAAA-TTAATATATTGCCAGATGGTTCTGAATACACAACATA
* * *
77166674 AATGCATATGAGAGTTGTTAGATAATGA
64 AATGCAAATAAAAGTTGTTAGATAATGA
* ** ** * * * *
77166702 -GTGGGTGAACTGCCAGT-ATTGCAGGTTAATACACTACCAGATGGTTCTGAATACACAACTTAA
1 TGTGGATGAACCACCA-TAATTGCAAATTAATATATTGCCAGATGGTTCTGAATACACAACATAA
*
77166765 TTGCAAATAAAAGTTGTT-GTATAAT-A
65 ATGCAAATAAAAGTTGTTAG-ATAATGA
*
77166791 TGTGGATGAACCACCATAATTGCAAATTAATATTTTGCCAGA
1 TGTGGATGAACCACCATAATTGCAAATTAATATATTGCCAGA
77166833 GCTTCCTCCT
Statistics
Matches: 99, Mismatches: 25, Indels: 14
0.72 0.18 0.10
Matches are distributed among these distances:
89 11 0.11
90 86 0.87
91 2 0.02
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (91 bp):
TGTGGATGAACCACCATAATTGCAAATTAATATATTGCCAGATGGTTCTGAATACACAACATAAA
TGCAAATAAAAGTTGTTAGATAATGA
Found at i:77177150 original size:276 final size:276
Alignment explanation
Indices: 77176657--77177203 Score: 1015
Period size: 276 Copynumber: 2.0 Consensus size: 276
77176647 GCAGAAGAAA
**
77176657 GAGAGCATAAGAGTAAGGATCCATATGCATTGGCGATTAGAAGCCTTATGTATGCTATGCTATGC
1 GAGAGCATAAGAGTAAGGATCCATATGCATTGGCGATTAGAAGCCTTATGTATGCTATAATATGC
* *
77176722 TTTGCACACTTCCAGATATATGTTTAGTTGAAGTACTAGTAGATGCGGGGAAAGTAACTTCTCAA
66 TTTGCACACTTCCAGATATATGTTTAGTTGAAGGACTAGTAGACGCGGGGAAAGTAACTTCTCAA
77176787 TATAACCTTTCGGATTCGTTTGTTGGGACTCTTATAATTAGGAGTTTTAACAAATATGTCAAGGA
131 TATAACCTTTCGGATTCGTTTGTTGGGACTCTTATAATTAGGAGTTTTAACAAATATGTCAAGGA
77176852 TATGAGAATGTGAAACATGACACATTTACTTCACTAGGGCAAGTGAGAGATTGTTGGGAAATGTG
196 TATGAGAATGTGAAACATGACACATTTACTTCACTAGGGCAAGTGAGAGATTGTTGGGAAATGTG
77176917 TTCATATTGTTTAAGT
261 TTCATATTGTTTAAGT
77176933 GAGAGCATAAGAGTAAGGATCCATATGCATTGGCGATTAGAAGCCTTATGTATGCTATAATATGC
1 GAGAGCATAAGAGTAAGGATCCATATGCATTGGCGATTAGAAGCCTTATGTATGCTATAATATGC
* * *
77176998 TTTGCACA-TGTCCAGATGTATGTTTAGTTGAAGGACTAGTAGACGTGGTGAAAGTAACTTCTCA
66 TTTGCACACT-TCCAGATATATGTTTAGTTGAAGGACTAGTAGACGCGGGGAAAGTAACTTCTCA
77177062 ATATAACCTTTCGGATTCGTTTGTTGGGACTCTTATAATTAGGAGTTTTAACAAATATGTCAAGG
130 ATATAACCTTTCGGATTCGTTTGTTGGGACTCTTATAATTAGGAGTTTTAACAAATATGTCAAGG
77177127 ATATGAGAATGTGAAACATGACACATTTACTTCACTAGGGCAAGTGAGAGATTGTTGGGAAATGT
195 ATATGAGAATGTGAAACATGACACATTTACTTCACTAGGGCAAGTGAGAGATTGTTGGGAAATGT
77177192 GTTCATATTGTT
260 GTTCATATTGTT
77177204 GTAAACATGT
Statistics
Matches: 263, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
275 1 0.00
276 262 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (276 bp):
GAGAGCATAAGAGTAAGGATCCATATGCATTGGCGATTAGAAGCCTTATGTATGCTATAATATGC
TTTGCACACTTCCAGATATATGTTTAGTTGAAGGACTAGTAGACGCGGGGAAAGTAACTTCTCAA
TATAACCTTTCGGATTCGTTTGTTGGGACTCTTATAATTAGGAGTTTTAACAAATATGTCAAGGA
TATGAGAATGTGAAACATGACACATTTACTTCACTAGGGCAAGTGAGAGATTGTTGGGAAATGTG
TTCATATTGTTTAAGT
Found at i:77180721 original size:50 final size:50
Alignment explanation
Indices: 77180608--77180789 Score: 159
Period size: 50 Copynumber: 3.5 Consensus size: 50
77180598 ATTTGGGTAA
* * * *
77180608 AGAGATCCCATGTAAGACCATGTCTGGGACAT-GACATTGACATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATAG-CATGGGCA-C--CGAG---ATG
* *
77180664 AGAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATAGCATGGGCACCGAGATG
* ** * * *
77180714 ATAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATAGCATGGGCACCGAGATG
** *
77180764 AGAACTCCCATGTAAGACCATATCTG
1 AGAGGTCCCATGTAAGACCATGTCTG
77180790 AGATATGGCA
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
50 64 0.60
53 3 0.03
55 1 0.01
56 37 0.35
57 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATAGCATGGGCACCGAGATG
Found at i:77180798 original size:50 final size:50
Alignment explanation
Indices: 77180660--77180800 Score: 165
Period size: 50 Copynumber: 2.8 Consensus size: 50
77180650 TCATTGAGAT
* * *
77180660 TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCGA
1 TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
* * ** *
77180710 GATGATAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGA
1 TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
** * * *
77180760 TATGAGAACTCCCATGTAAGACCATATCTGAGATATGGCAT
1 TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT
77180801 TGACAGTACA
Statistics
Matches: 73, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
TATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
Found at i:77180847 original size:49 final size:50
Alignment explanation
Indices: 77180613--77180847 Score: 143
Period size: 50 Copynumber: 4.6 Consensus size: 50
77180603 GGTAAAGAGA
* * * * **
77180613 TCCCATGTAAGACCATGTCTGGGACATGACATTGACATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CA--GACA--A-GAGAAC
* * * * * * * **
77180669 TCCCATGTAAGACCATGTCTGGGACATAGCGTTGGCACCGAGATGATAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACAGACAAGAGAAC
** * * * *
77180719 TCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACAGACAAGAGAAC
* * * *
77180769 TCCCATGTAAGACCATATCTGAGATATGGCAT-TG-ACAGTACAAGA-AAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACAG-ACAAGAGAAC
*
77180817 ATCCCGTGTAAGACCATGTCTGGGACATGGC
1 -TCCCATGTAAGACCATGTCTGGGACATGGC
77180848 TTTGGCATGT
Statistics
Matches: 146, Mismatches: 31, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
48 6 0.04
49 31 0.21
50 71 0.49
53 4 0.03
55 1 0.01
56 33 0.23
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACAGACAAGAGAAC
Found at i:77182684 original size:16 final size:16
Alignment explanation
Indices: 77182663--77182695 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
77182653 TTGTACGTTT
77182663 TGTTTGTTTGTTTGTA
1 TGTTTGTTTGTTTGTA
*
77182679 TGTTTGTTTTTTTGTA
1 TGTTTGTTTGTTTGTA
77182695 T
1 T
77182696 TTTTATCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.00, G:0.21, T:0.73
Consensus pattern (16 bp):
TGTTTGTTTGTTTGTA
Found at i:77187959 original size:31 final size:31
Alignment explanation
Indices: 77187924--77187992 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
77187914 CATAACAACT
77187924 CAATGACTTAAATGAAAACTTCTGAATAGTC
1 CAATGACTTAAATGAAAACTTCTGAATAGTC
* * *
77187955 CAATGACTTAAATGAGAACTTTTGAATAGTT
1 CAATGACTTAAATGAAAACTTCTGAATAGTC
77187986 CAATGAC
1 CAATGAC
77187993 CATTTTGTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (31 bp):
CAATGACTTAAATGAAAACTTCTGAATAGTC
Found at i:77188475 original size:11 final size:11
Alignment explanation
Indices: 77188459--77188493 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
77188449 AACTAATCAT
77188459 CTCTCAATTTC
1 CTCTCAATTTC
*
77188470 CTCTCAATTTG
1 CTCTCAATTTC
77188481 CTCTCAATTTC
1 CTCTCAATTTC
77188492 CT
1 CT
77188494 TCCAAATTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.17, C:0.34, G:0.03, T:0.46
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:77188506 original size:22 final size:22
Alignment explanation
Indices: 77188459--77188509 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
77188449 AACTAATCAT
* *
77188459 CTCTCAATTTCCTCTCAATTTG
1 CTCTCAATTTCCTCTCAAATTA
77188481 CTCTCAATTTCCT-TCCAAATTA
1 CTCTCAATTTCCTCT-CAAATTA
77188503 CTCTCAA
1 CTCTCAA
77188510 ATCCATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.24, C:0.33, G:0.02, T:0.41
Consensus pattern (22 bp):
CTCTCAATTTCCTCTCAAATTA
Found at i:77188552 original size:51 final size:51
Alignment explanation
Indices: 77188473--77188570 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
77188463 CAATTTCCTC
77188473 TCAATTTGCTCTCAATTTCCTTCCAAATTACTCTCAAATCCATATTTAATT
1 TCAATTTGCTCTCAATTTCCTTCCAAATTACTCTCAAATCCATATTTAATT
* * * *
77188524 TCAATTTGCTCTCAATTTCC-TCTTAAATTTCTCTTAAATCCCTATTT
1 TCAATTTGCTCTCAATTTCCTTC-CAAATTACTCTCAAATCCATATTT
77188571 TTTTAATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 2 0.05
51 40 0.95
ACGTcount: A:0.27, C:0.26, G:0.02, T:0.46
Consensus pattern (51 bp):
TCAATTTGCTCTCAATTTCCTTCCAAATTACTCTCAAATCCATATTTAATT
Found at i:77190931 original size:7 final size:7
Alignment explanation
Indices: 77190911--77190950 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
77190901 ATTTATTAAA
77190911 AATTTAT
1 AATTTAT
77190918 AAATTTAT
1 -AATTTAT
77190926 AATTTAT
1 AATTTAT
77190933 AA-TTA-
1 AATTTAT
77190938 AATTTAT
1 AATTTAT
77190945 AATTTA
1 AATTTA
77190951 ATTGACAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 2 0.07
6 6 0.20
7 15 0.50
8 7 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (7 bp):
AATTTAT
Found at i:77191125 original size:15 final size:15
Alignment explanation
Indices: 77191105--77191158 Score: 60
Period size: 15 Copynumber: 3.8 Consensus size: 15
77191095 TAAAAACTCT
77191105 AAACCCTTAACTTAA
1 AAACCCTTAACTTAA
*
77191120 AAACCC-TAAC--CA
1 AAACCCTTAACTTAA
* *
77191132 TAACCCTTAAATTAA
1 AAACCCTTAACTTAA
77191147 AAACCCTTAACT
1 AAACCCTTAACT
77191159 ATCCAAGCCC
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
12 6 0.20
13 3 0.10
14 4 0.13
15 17 0.57
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (15 bp):
AAACCCTTAACTTAA
Found at i:77191130 original size:21 final size:22
Alignment explanation
Indices: 77190967--77191128 Score: 231
Period size: 22 Copynumber: 7.5 Consensus size: 22
77190957 AAACCCTAAC
* *
77190967 AAAAACCAT-AACCTTTAACTT
1 AAAAACCCTAAACCCTTAACTT
77190988 AAAAACCCTAAACCCTTAACTT
1 AAAAACCCTAAACCCTTAACTT
*
77191010 GAAAACCCTAAACCCTTAACTT
1 AAAAACCCTAAACCCTTAACTT
77191032 AAAAACCCTAAACCCTTAACTT
1 AAAAACCCTAAACCCTTAACTT
* **
77191054 AAATACCCT-AACGTTTAACTT
1 AAAAACCCTAAACCCTTAACTT
*
77191075 AAATACCCT-AACCCTTAACTT
1 AAAAACCCTAAACCCTTAACTT
*
77191096 AAAAACTCTAAACCCTTAACTT
1 AAAAACCCTAAACCCTTAACTT
77191118 AAAAACCCTAA
1 AAAAACCCTAA
77191129 CCATAACCCT
Statistics
Matches: 127, Mismatches: 12, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
21 44 0.35
22 83 0.65
ACGTcount: A:0.44, C:0.29, G:0.01, T:0.25
Consensus pattern (22 bp):
AAAAACCCTAAACCCTTAACTT
Found at i:77191143 original size:86 final size:87
Alignment explanation
Indices: 77190975--77191135 Score: 256
Period size: 86 Copynumber: 1.9 Consensus size: 87
77190965 ACAAAAACCA
*
77190975 TAACCTTTAACTTAAAAACCCTAAACCCTTAACTTGAAAACCCTAAACCCTTAACTTAAAAACCC
1 TAACCTTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCC
*
77191040 TAAACCCTTAACTTAAATACCC
66 TAAACCCATAACTTAAATACCC
* * *
77191062 TAACGTTTAACTTAAATACCCT-AACCCTTAACTTAAAAACTCTAAACCCTTAACTTAAAAACCC
1 TAACCTTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCC
77191126 T-AA-CCATAAC
66 TAAACCCATAAC
77191136 CCTTAAATTA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
84 6 0.09
85 2 0.03
86 41 0.59
87 20 0.29
ACGTcount: A:0.43, C:0.30, G:0.01, T:0.26
Consensus pattern (87 bp):
TAACCTTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCC
TAAACCCATAACTTAAATACCC
Found at i:77191152 original size:64 final size:63
Alignment explanation
Indices: 77190967--77191158 Score: 185
Period size: 64 Copynumber: 3.0 Consensus size: 63
77190957 AAACCCTAAC
* * * * *
77190967 AAAAACCAT-AACCTTTAACTTAAAAACCCTAAACCCTTAACTTGAAA-ACCCTAAACCCTTAAC
1 AAAAACCCTAAACCCTTAACTTAAAAACCCT-AACGCATAACTT-AAATA--CAAAACCCTTAAC
77191030 TT
62 TT
* ** **
77191032 AAAAACCCTAAACCCTTAACTTAAATACCCTAACGTTTAACTTAAATACCCTAACCCTTAACTT
1 AAAAACCCTAAACCCTTAACTTAAAAACCCTAACGCATAACTTAAATA-CAAAACCCTTAACTT
*
77191096 AAAAACTCTAAACCCTTAACTTAAAAACCCTAAC-CATAACCCTTAAATTA-AAAACCCTTAACT
1 AAAAACCCTAAACCCTTAACTTAAAAACCCTAACGCATAA--CTTAAA-TACAAAACCCTTAACT
77191159 ATCCAAGCCC
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
63 3 0.03
64 60 0.55
65 25 0.23
66 21 0.19
ACGTcount: A:0.44, C:0.29, G:0.01, T:0.26
Consensus pattern (63 bp):
AAAAACCCTAAACCCTTAACTTAAAAACCCTAACGCATAACTTAAATACAAAACCCTTAACTT
Found at i:77191157 original size:22 final size:22
Alignment explanation
Indices: 77190967--77191157 Score: 199
Period size: 22 Copynumber: 8.6 Consensus size: 22
77190957 AAACCCTAAC
* *
77190967 AAAAA-CCATAACCTTTAACTT
1 AAAAACCCTTAACCCTTAACTT
*
77190988 AAAAACCCTAAACCCTTAACTT
1 AAAAACCCTTAACCCTTAACTT
* *
77191010 GAAAACCCTAAACCCTTAACTT
1 AAAAACCCTTAACCCTTAACTT
*
77191032 AAAAACCCTAAACCCTTAACTT
1 AAAAACCCTTAACCCTTAACTT
* **
77191054 AAATACCC-TAACGTTTAACTT
1 AAAAACCCTTAACCCTTAACTT
*
77191075 AAATACCC-TAACCCTTAACTT
1 AAAAACCCTTAACCCTTAACTT
* *
77191096 AAAAACTCTAAACCCTTAACTT
1 AAAAACCCTTAACCCTTAACTT
*
77191118 AAAAACCCTAACCATAACCCTTAAATT
1 AAAAACCCT-----TAACCCTTAACTT
77191145 AAAAACCCTTAAC
1 AAAAACCCTTAAC
77191158 TATCCAAGCC
Statistics
Matches: 146, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
21 40 0.27
22 86 0.59
27 20 0.14
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.25
Consensus pattern (22 bp):
AAAAACCCTTAACCCTTAACTT
Found at i:77191171 original size:86 final size:84
Alignment explanation
Indices: 77190967--77191158 Score: 213
Period size: 86 Copynumber: 2.2 Consensus size: 84
77190957 AAACCCTAAC
* * * *
77190967 AAAAACCATAACCTTTAACTTAAAAACCCTAAACCCTTAACTTGAAAACCCTAAACCCTTAACTT
1 AAAAACCCTAA-C-TTAACTCAAATACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTT
*
77191032 AAAAACCCTAAACCCTTAACTT
63 AAAAACCCTAAACCCTTAAATT
* * *
77191054 AAATACCCTAACGTTTAACTTAAATACCCTAACCCTTAACTTAAAAACTCTAAACCCTTAACTTA
1 AAAAACCCTAAC--TTAACTCAAATACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTA
77191119 AAAACCCTAACCATAACCCTTAAATT
64 AAAACCCT----A-AACCCTTAAATT
77191145 AAAAACCCTTAACT
1 AAAAACCC-TAACT
77191159 ATCCAAGCCC
Statistics
Matches: 91, Mismatches: 7, Indels: 11
0.83 0.06 0.10
Matches are distributed among these distances:
86 42 0.46
87 25 0.27
90 2 0.02
91 18 0.20
92 4 0.04
ACGTcount: A:0.44, C:0.29, G:0.01, T:0.26
Consensus pattern (84 bp):
AAAAACCCTAACTTAACTCAAATACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
AACCCTAAACCCTTAAATT
Found at i:77191204 original size:18 final size:18
Alignment explanation
Indices: 77191170--77191204 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
77191160 TCCAAGCCCT
* *
77191170 AAAACCCTAATCTTAACA
1 AAAACCCTAACCCTAACA
77191188 AAAACCCTAACCCTAAC
1 AAAACCCTAACCCTAAC
77191205 CCTAATATGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAACCCTAACCCTAACA
Found at i:77191405 original size:37 final size:38
Alignment explanation
Indices: 77191362--77191524 Score: 115
Period size: 37 Copynumber: 4.4 Consensus size: 38
77191352 TTAATACAAT
77191362 TAACAATTAATA-ATTTGATATAATTTGATAAATTTAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTTAC
* *
77191399 TAACAATTAATACAATT-A-ATAA-TTAAT-AATTTGAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTT-AC
* ** * * * * * * * *
77191434 TAACAAAATGTTAGATTTTACAAAATGTT-TTGACTGGTAC
1 TAAC-AATTAATACATTTGATATAAT-TTGATAAAT-TTAC
*
77191474 TAACAATTAATA-ATTTGATATAATTTGATAATTTTAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTTAC
77191511 TAACAATTAATACA
1 TAACAATTAATACA
77191525 ATTAACAATT
Statistics
Matches: 94, Mismatches: 21, Indels: 21
0.69 0.15 0.15
Matches are distributed among these distances:
34 5 0.05
35 10 0.11
36 12 0.13
37 31 0.33
38 19 0.20
39 6 0.06
40 10 0.11
41 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (38 bp):
TAACAATTAATACATTTGATATAATTTGATAAATTTAC
Found at i:77191420 original size:46 final size:51
Alignment explanation
Indices: 77191372--77192092 Score: 495
Period size: 53 Copynumber: 13.2 Consensus size: 51
77191362 TAACAATTAA
*
77191372 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
* ** * * ** *
77191425 TAATTTGACTAACAAAATGTTAGATTTTAC-AA-AATGTTTTGACTGGTACTAACAATTAA
1 TAATTTGA-T-ATAATTTGATA-AATTTACTAACAA----TT-A-T-AAATTAACAATTAA
*
77191484 TAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
*
77191537 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
* ** * * ** *
77191590 TAATTTGACTAACAAAATGTTAGATTTTAC-AA-AATGTTTTGACTGGTACTAACAATTAA
1 TAATTTGA-T-ATAATTTGATA-AATTTACTAACAA----TT-A-T-AAATTAACAATTAA
*
77191649 TAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
*
77191702 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
* ** * * ** *
77191755 TAATTTGACTAACAAAATGTTAGATTTTAC-AA-AATGTTTTGACTGGTACTAACAATTAA
1 TAATTTGA-T-ATAATTTGATA-AATTTACTAACAA----TT-A-T-AAATTAACAATTAA
*
77191814 TAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
*
77191867 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
* ** * * ** *
77191920 TAATTTGACTAACAAAATGTTAGATTTTAC-AA-AATGTTTTGACTGGTACTAACAATTAA
1 TAATTTGA-T-ATAATTTGATA-AATTTACTAACAA----TT-A-T-AAATTAACAATTAA
*
77191979 TAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
*
77192032 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATT-ATA-AATTAACAATTAA
77192085 TAATTTGA
1 TAATTTGA
77192093 CTAACAAAAT
Statistics
Matches: 540, Mismatches: 80, Indels: 96
0.75 0.11 0.13
Matches are distributed among these distances:
53 292 0.54
54 24 0.04
55 36 0.07
56 52 0.10
57 36 0.07
58 24 0.04
59 76 0.14
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.40
Consensus pattern (51 bp):
TAATTTGATATAATTTGATAAATTTACTAACAATTATAAATTAACAATTAA
Found at i:77191478 original size:112 final size:106
Alignment explanation
Indices: 77191309--77192114 Score: 746
Period size: 112 Copynumber: 7.3 Consensus size: 106
77191299 TGACTGGTAC
* ** *
77191309 TAACAATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAATTAATA
1 TAACAATTAATAATTTGATACAAAATGATAATTTTACTAACAATTAATACAACTAACAATTAATA
*
77191374 ATTTGATATAATTTGATAAATTTACTAACAATTAATACAAT
66 ATTTGATATAATTTGATAATTTTACTAACAATTAATACAAT
* * ** *
77191415 TAATAATTAATAATTTGACTAACAAAATGTTAGATTTTAC-AA-AATGTTTTGACTGGTACTAAC
1 TAACAATTAATAATTTGA-T-ACAAAATGATA-ATTTTACTAACAAT-TAAT-AC---AACTAAC
77191478 AATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAAT
58 AATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAAT
* ** * * *
77191527 TAACAATTAATAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATA
1 TAACAATTAATAATTTGATACAAAATGATAATTTTACTAACAATTAATACAACTAACAATTAATA
* ** * ** * *
77191592 ATTTGACTAACAAAATGTTAGATTTTAC-AA-AATGTTTTGACTGGTAC
66 ATTTGA-T-ATAATTTGATA-ATTTTACTAACAAT-TAAT-AC---AAT
* ** *
77191639 TAACAATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAATTAATA
1 TAACAATTAATAATTTGATACAAAATGATAATTTTACTAACAATTAATACAACTAACAATTAATA
*
77191704 ATTTGATATAATTTGATAAATTTACTAACAATTAATACAAT
66 ATTTGATATAATTTGATAATTTTACTAACAATTAATACAAT
* * ** *
77191745 TAATAATTAATAATTTGACTAACAAAATGTTAGATTTTAC-AA-AATGTTTTGACTGGTACTAAC
1 TAACAATTAATAATTTGA-T-ACAAAATGATA-ATTTTACTAACAAT-TAAT-AC---AACTAAC
77191808 AATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAAT
58 AATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAAT
* ** * * *
77191857 TAACAATTAATAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATA
1 TAACAATTAATAATTTGATACAAAATGATAATTTTACTAACAATTAATACAACTAACAATTAATA
* ** * ** * *
77191922 ATTTGACTAACAAAATGTTAGATTTTAC-AA-AATGTTTTGACTGGTAC
66 ATTTGA-T-ATAATTTGATA-ATTTTACTAACAAT-TAAT-AC---AAT
* ** *
77191969 TAACAATTAATAATTTGATATAATTTGATAATTTTACTAACAATTAATACAATTAACAATTAATA
1 TAACAATTAATAATTTGATACAAAATGATAATTTTACTAACAATTAATACAACTAACAATTAATA
*
77192034 ATTTGATATAATTTGATAAATTTACTAACAATTAATACAAT
66 ATTTGATATAATTTGATAATTTTACTAACAATTAATACAAT
* *
77192075 TAATAATTAATAATTTGACTAACAAAATGTTAGATTTTAC
1 TAACAATTAATAATTTGA-T-ACAAAATGATA-ATTTTAC
77192115 CATTCAACTA
Statistics
Matches: 572, Mismatches: 85, Indels: 83
0.77 0.11 0.11
Matches are distributed among these distances:
106 89 0.16
107 17 0.03
108 51 0.09
109 75 0.13
110 44 0.08
111 16 0.03
112 280 0.49
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (106 bp):
TAACAATTAATAATTTGATACAAAATGATAATTTTACTAACAATTAATACAACTAACAATTAATA
ATTTGATATAATTTGATAATTTTACTAACAATTAATACAAT
Found at i:77191484 original size:165 final size:165
Alignment explanation
Indices: 77191207--77192114 Score: 1807
Period size: 165 Copynumber: 5.5 Consensus size: 165
77191197 ACCCTAACCC
*
77191207 TAATATGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
77191272 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
66 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
77191337 TAATTTTACTAACAATTAATACAATTAACAATTAA
131 TAATTTTACTAACAATTAATACAATTAACAATTAA
77191372 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
77191437 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
66 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
77191502 TAATTTTACTAACAATTAATACAATTAACAATTAA
131 TAATTTTACTAACAATTAATACAATTAACAATTAA
77191537 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
77191602 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
66 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
77191667 TAATTTTACTAACAATTAATACAATTAACAATTAA
131 TAATTTTACTAACAATTAATACAATTAACAATTAA
77191702 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
77191767 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
66 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
77191832 TAATTTTACTAACAATTAATACAATTAACAATTAA
131 TAATTTTACTAACAATTAATACAATTAACAATTAA
77191867 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
77191932 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
66 CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
77191997 TAATTTTACTAACAATTAATACAATTAACAATTAA
131 TAATTTTACTAACAATTAATACAATTAACAATTAA
77192032 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
1 TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
77192097 CAAAATGTTAGATTTTAC
66 CAAAATGTTAGATTTTAC
77192115 CATTCAACTA
Statistics
Matches: 742, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
165 742 1.00
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.40
Consensus pattern (165 bp):
TAATTTGATATAATTTGATAAATTTACTAACAATTAATACAATTAATAATTAATAATTTGACTAA
CAAAATGTTAGATTTTACAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGA
TAATTTTACTAACAATTAATACAATTAACAATTAA
Found at i:77191570 original size:37 final size:38
Alignment explanation
Indices: 77191527--77191689 Score: 115
Period size: 37 Copynumber: 4.4 Consensus size: 38
77191517 TTAATACAAT
77191527 TAACAATTAATA-ATTTGATATAATTTGATAAATTTAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTTAC
* *
77191564 TAACAATTAATACAATT-A-ATAA-TTAAT-AATTTGAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTT-AC
* ** * * * * * * * *
77191599 TAACAAAATGTTAGATTTTACAAAATGTT-TTGACTGGTAC
1 TAAC-AATTAATACATTTGATATAAT-TTGATAAAT-TTAC
*
77191639 TAACAATTAATA-ATTTGATATAATTTGATAATTTTAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTTAC
77191676 TAACAATTAATACA
1 TAACAATTAATACA
77191690 ATTAACAATT
Statistics
Matches: 94, Mismatches: 21, Indels: 21
0.69 0.15 0.15
Matches are distributed among these distances:
34 5 0.05
35 10 0.11
36 12 0.13
37 31 0.33
38 19 0.20
39 6 0.06
40 10 0.11
41 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (38 bp):
TAACAATTAATACATTTGATATAATTTGATAAATTTAC
Found at i:77191735 original size:37 final size:38
Alignment explanation
Indices: 77191692--77191854 Score: 115
Period size: 37 Copynumber: 4.4 Consensus size: 38
77191682 TTAATACAAT
77191692 TAACAATTAATA-ATTTGATATAATTTGATAAATTTAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTTAC
* *
77191729 TAACAATTAATACAATT-A-ATAA-TTAAT-AATTTGAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTT-AC
* ** * * * * * * * *
77191764 TAACAAAATGTTAGATTTTACAAAATGTT-TTGACTGGTAC
1 TAAC-AATTAATACATTTGATATAAT-TTGATAAAT-TTAC
*
77191804 TAACAATTAATA-ATTTGATATAATTTGATAATTTTAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTTAC
77191841 TAACAATTAATACA
1 TAACAATTAATACA
77191855 ATTAACAATT
Statistics
Matches: 94, Mismatches: 21, Indels: 21
0.69 0.15 0.15
Matches are distributed among these distances:
34 5 0.05
35 10 0.11
36 12 0.13
37 31 0.33
38 19 0.20
39 6 0.06
40 10 0.11
41 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (38 bp):
TAACAATTAATACATTTGATATAATTTGATAAATTTAC
Found at i:77191900 original size:37 final size:38
Alignment explanation
Indices: 77191857--77192019 Score: 115
Period size: 37 Copynumber: 4.4 Consensus size: 38
77191847 TTAATACAAT
77191857 TAACAATTAATA-ATTTGATATAATTTGATAAATTTAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTTAC
* *
77191894 TAACAATTAATACAATT-A-ATAA-TTAAT-AATTTGAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTT-AC
* ** * * * * * * * *
77191929 TAACAAAATGTTAGATTTTACAAAATGTT-TTGACTGGTAC
1 TAAC-AATTAATACATTTGATATAAT-TTGATAAAT-TTAC
*
77191969 TAACAATTAATA-ATTTGATATAATTTGATAATTTTAC
1 TAACAATTAATACATTTGATATAATTTGATAAATTTAC
77192006 TAACAATTAATACA
1 TAACAATTAATACA
77192020 ATTAACAATT
Statistics
Matches: 94, Mismatches: 21, Indels: 21
0.69 0.15 0.15
Matches are distributed among these distances:
34 5 0.05
35 10 0.11
36 12 0.13
37 31 0.33
38 19 0.20
39 6 0.06
40 10 0.11
41 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (38 bp):
TAACAATTAATACATTTGATATAATTTGATAAATTTAC
Found at i:77195362 original size:124 final size:125
Alignment explanation
Indices: 77195098--77195402 Score: 479
Period size: 124 Copynumber: 2.4 Consensus size: 125
77195088 CCCAAACATG
* * *
77195098 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGAGTCCACGAGGGCGCGATTTCAGAAATTCTTCTGATAAAACATCCTGC
*
77195163 TTGAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGAC
66 TTGAAGCAGTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGAC
* *
77195223 CTACTGTAGCAAAAGCGAGTCCATGAGGGCGCAATTTCAGAAATTCTTCTGATAAAACATCCTGC
1 CTACTGTAGCAAAAGCGAGTCCACGAGGGCGCGATTTCAGAAATTCTTCTGATAAAACATCCTGC
* * *
77195288 TTGAAGC-GTTTTTATACTATTTGCTTAGAAATGTCAACTCGAAATTATTTTTCCAGGAC
66 TTGAAGCAGTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGAC
* * *
77195347 CTACTGTAGCAAAAGC-ATGTCCACGTGAGCGCGACTTCAGAAATTCTTCTGATAAA
1 CTACTGTAGCAAAAGCGA-GTCCACGAGGGCGCGATTTCAGAAATTCTTCTGATAAA
77195403 GCATATTGCT
Statistics
Matches: 165, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
123 1 0.01
124 97 0.59
125 67 0.41
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGAGTCCACGAGGGCGCGATTTCAGAAATTCTTCTGATAAAACATCCTGC
TTGAAGCAGTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGAC
Found at i:77195570 original size:22 final size:21
Alignment explanation
Indices: 77195530--77195575 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
77195520 TTTTTTCCAA
* *
77195530 AACCTTAAAAACCTTAAACCCT
1 AACCTTAAAAACC-CAAAACCT
77195552 AACCTTAAAAACCCAAAACCT
1 AACCTTAAAAACCCAAAACCT
77195573 AAC
1 AAC
77195576 GTTGAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (21 bp):
AACCTTAAAAACCCAAAACCT
Found at i:77197445 original size:27 final size:27
Alignment explanation
Indices: 77197415--77197468 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
77197405 CATCTCTATC
*
77197415 GTTAATGCAGGCAAAGTCCTTTGTTAA
1 GTTAATGCAGGAAAAGTCCTTTGTTAA
77197442 GTTAATGCAGGAAAAGTCCTTTGTTAA
1 GTTAATGCAGGAAAAGTCCTTTGTTAA
77197469 CTTTTTTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.33
Consensus pattern (27 bp):
GTTAATGCAGGAAAAGTCCTTTGTTAA
Found at i:77200166 original size:32 final size:32
Alignment explanation
Indices: 77200130--77200194 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
77200120 ATCATATGCA
77200130 TATGATTGTTGGAAATCAAAGTGTGGATTTTT
1 TATGATTGTTGGAAATCAAAGTGTGGATTTTT
77200162 TATGATTGTTGGAAATCAAAGTGTGGATTTTT
1 TATGATTGTTGGAAATCAAAGTGTGGATTTTT
77200194 T
1 T
77200195 TTTCTTTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.03, G:0.25, T:0.45
Consensus pattern (32 bp):
TATGATTGTTGGAAATCAAAGTGTGGATTTTT
Found at i:77204231 original size:16 final size:16
Alignment explanation
Indices: 77204212--77204249 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
77204202 ATTAAATTTT
77204212 AATATGATTATTATTA
1 AATATGATTATTATTA
* *
77204228 AATATAATTATTATTC
1 AATATGATTATTATTA
77204244 AATATG
1 AATATG
77204250 TAACATGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (16 bp):
AATATGATTATTATTA
Done.