Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 251 of 313
Found at i:77205334 original size:27 final size:24
Alignment explanation
Indices: 77205278--77205334 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 24
77205268 ATAATAAGGT
*
77205278 AATATTTTTACTAGTTATTATAAA
1 AATATTTTTACTAATTATTATAAA
77205302 ATATATTTTTACTAATTAAATTATGAAA
1 A-ATATTTTTACTAATT--ATTAT-AAA
77205330 AATAT
1 AATAT
77205335 AATATTGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 1 0.04
25 14 0.50
27 9 0.32
28 4 0.14
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (24 bp):
AATATTTTTACTAATTATTATAAA
Found at i:77206138 original size:3 final size:3
Alignment explanation
Indices: 77206130--77206178 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
77206120 ATGTTATGTC
* * *
77206130 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAG CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
77206178 T
1 T
77206179 GTAAATATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:77206256 original size:3 final size:3
Alignment explanation
Indices: 77206245--77206484 Score: 52
Period size: 3 Copynumber: 80.7 Consensus size: 3
77206235 TGATGATAGC
* * * * * *
77206245 AAT AGT AAT AAT -GT AAT AAT AA- AGT AAA AAA AAT AAT AGT AAT ACATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T
* * * * *
77206293 AAT AAG AAT AAT AAT AGT -AT ATT AAT AAC AAT AAT AGAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* * * * * * *
77206338 GAC GA- AAT AAT AAT AAT AAT AA- ACT AA- AGAGT ACT AAT AGT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT AAT
* * * * *
77206382 AAC AAT AAT -AT AAAT AAT AAT GAA- AAC AAC AAG AGA- AAT AAT AAC
1 AAT AAT AAT AAT -AAT AAT AAT -AAT AAT AAT AAT A-AT AAT AAT AAT
* * * * ** *
77206427 AAT AA- CAG AAT AAG AAT AAT GAT AAT AAT AAT AAT AGC AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
77206474 AA- AATT AAT AA
1 AAT AA-T AAT AA
77206485 ATAAATATAA
Statistics
Matches: 170, Mismatches: 47, Indels: 40
0.66 0.18 0.16
Matches are distributed among these distances:
2 14 0.08
3 142 0.84
4 11 0.06
5 3 0.02
ACGTcount: A:0.62, C:0.05, G:0.08, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:77206302 original size:23 final size:23
Alignment explanation
Indices: 77206276--77206329 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
77206266 AAGTAAAAAA
*
77206276 AATAATAGTAATACATTAATAAG
1 AATAATAGTAATACATTAATAAC
* * *
77206299 AATAATAATAGTATATTAATAAC
1 AATAATAGTAATACATTAATAAC
77206322 AATAATAG
1 AATAATAG
77206330 AAAATAATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (23 bp):
AATAATAGTAATACATTAATAAC
Found at i:77207662 original size:35 final size:35
Alignment explanation
Indices: 77207617--77207685 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
77207607 GGGTGTGTGA
77207617 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
*
77207652 TGGTGTTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
77207686 AGAGGCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.20, C:0.10, G:0.51, T:0.19
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGAG
Found at i:77208650 original size:20 final size:21
Alignment explanation
Indices: 77208604--77208650 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
77208594 AAACAGACCT
*
77208604 AACCCAAAACAATAAAATTAC
1 AACCCAAAACAATAAAATTAA
*
77208625 AGCCCAAAA-AGA-AAAATTAA
1 AACCCAAAACA-ATAAAATTAA
77208645 AACCCA
1 AACCCA
77208651 GTCCAAAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.62, C:0.23, G:0.04, T:0.11
Consensus pattern (21 bp):
AACCCAAAACAATAAAATTAA
Found at i:77209056 original size:2 final size:2
Alignment explanation
Indices: 77209049--77209075 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
77209039 CTTTTCGATT
77209049 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
77209076 TATATAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:77209658 original size:3 final size:3
Alignment explanation
Indices: 77209652--77209732 Score: 71
Period size: 3 Copynumber: 27.7 Consensus size: 3
77209642 TTTAGCATTT
* * * *
77209652 TTA TTA TT- TTC TTCA TTA TTT TTA ATA TT- TTA TCA -TA TT- TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
77209694 TTA TTA TTG TTA TTA TTA GTTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT
77209733 TCTTCATCCA
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
2 7 0.11
3 51 0.81
4 5 0.08
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:77209668 original size:18 final size:18
Alignment explanation
Indices: 77209640--77209698 Score: 50
Period size: 20 Copynumber: 3.1 Consensus size: 18
77209630 TTAACCCCTT
*
77209640 TTTTTAGCATTTTTATTA
1 TTTTTATCATTTTTATTA
77209658 TTTTCT-TCATTATTT-TTAA
1 TTTT-TATCATT-TTTATT-A
77209677 TATTTTATCATATTTTATTA
1 T-TTTTATCAT-TTTTATTA
77209697 TT
1 TT
77209699 ATTGTTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 13
0.70 0.02 0.28
Matches are distributed among these distances:
18 10 0.30
19 8 0.24
20 12 0.36
21 3 0.09
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTTTATCATTTTTATTA
Found at i:77209674 original size:22 final size:20
Alignment explanation
Indices: 77209648--77209733 Score: 63
Period size: 22 Copynumber: 4.2 Consensus size: 20
77209638 TTTTTTTAGC
77209648 ATTTTTATTATTTTCTTCATT
1 ATTTTTATTATTTT-TTCATT
* *
77209669 ATTTTTAATATTTTATCA-T
1 ATTTTTATTATTTTTTCATT
77209688 A-TTTTATTATTATTGTT-ATT
1 ATTTTTATTATT-TT-TTCATT
*
77209708 ATTAGTTATTATTATTATT-ATT
1 ATT-TTTATTATT-TT-TTCATT
77209730 ATTT
1 ATTT
77209734 CTTCATCCAT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
18 9 0.17
19 5 0.09
20 6 0.11
21 14 0.26
22 19 0.36
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.67
Consensus pattern (20 bp):
ATTTTTATTATTTTTTCATT
Found at i:77209718 original size:19 final size:19
Alignment explanation
Indices: 77209694--77209730 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
77209684 TCATATTTTA
*
77209694 TTATTATTGTTATTATTAG
1 TTATTATTATTATTATTAG
77209713 TTATTATTATTATTATTA
1 TTATTATTATTATTATTA
77209731 TTTCTTCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (19 bp):
TTATTATTATTATTATTAG
Found at i:77210111 original size:26 final size:26
Alignment explanation
Indices: 77210059--77210111 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
77210049 TTTATGTTCA
*
77210059 TTTATGTATTTATTTATATGTTCATT
1 TTTATGTATTTATTTATATATTCATT
* *
77210085 TTTATGT-TTTAGTTTATTTATTTATT
1 TTTATGTATTTA-TTTATATATTCATT
77210111 T
1 T
77210112 ATTTGCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.21, C:0.02, G:0.08, T:0.70
Consensus pattern (26 bp):
TTTATGTATTTATTTATATATTCATT
Found at i:77210434 original size:110 final size:110
Alignment explanation
Indices: 77210236--77210550 Score: 427
Period size: 110 Copynumber: 2.9 Consensus size: 110
77210226 AACAAAATTT
*
77210236 TTTTCAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* * *
77210301 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAAA
66 CGATTTTTCTCGTTTAACCAAATGGCTAAATACCCTTTTAAAAAA
* *
77210346 TTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCTTAAGGTGCTGGGTGT
1 TTTTAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* *
77210411 CGATTTTTCTCATTTAACCAAATGGCTAAATACCCTTTTTAAAAA
66 CGATTTTTCTCGTTTAACCAAATGGCTAAATACCCTTTTAAAAAA
** * * * ** * * * *
77210456 TTTCGAAGTAAGATAATATTTTGCGTTTGGAAATTTAAGGAAACGTACCCTAAGGTGCTGGGTTT
1 TTTTAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* *
77210521 CGA--TTTCTCGTTTAACCAAATAGCCAAATA
66 CGATTTTTCTCGTTTAACCAAATGGCTAAATA
77210551 TCCTCTCGAA
Statistics
Matches: 181, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
108 24 0.13
110 157 0.87
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (110 bp):
TTTTAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCGTTTAACCAAATGGCTAAATACCCTTTTAAAAAA
Found at i:77213354 original size:43 final size:42
Alignment explanation
Indices: 77213287--77213387 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 42
77213277 GGTTTAATTG
77213287 ATGATGCACTTATGTGCCAATATATTTGCTTCAATTTATCAA
1 ATGATGCACTTATGTGCCAATATATTTGCTTCAATTTATCAA
* * *
77213329 ATGATGCAC-TACGTGTGCCAGTATATTTTCTTCAATTTATTC-G
1 ATGATGCACTTA--TGTGCCAATATATTTGCTTCAATTTA-TCAA
*
77213372 ATGATACACTTATGTG
1 ATGATGCACTTATGTG
77213388 TCAGTATGAC
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
41 2 0.04
42 13 0.25
43 32 0.63
44 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (42 bp):
ATGATGCACTTATGTGCCAATATATTTGCTTCAATTTATCAA
Found at i:77219213 original size:19 final size:19
Alignment explanation
Indices: 77219176--77219222 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
77219166 TATACTAGGT
*
77219176 TTAATTATAATTAAACTTAA
1 TTAATTA-ACTTAAACTTAA
* *
77219196 TTCATTAACTTAATCTTAA
1 TTAATTAACTTAAACTTAA
77219215 TTAATTAA
1 TTAATTAA
77219223 ACATTAATCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.47
Consensus pattern (19 bp):
TTAATTAACTTAAACTTAA
Found at i:77223112 original size:40 final size:40
Alignment explanation
Indices: 77223067--77223143 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
77223057 AGCTTTTGGG
77223067 CAATATATTTTAAGTCATGGTAACTTTATAAAAACATGAT
1 CAATATATTTTAAGTCATGGTAACTTTATAAAAACATGAT
77223107 CAATATATTTTAAGTCATGGTAACTTTATAAAAACAT
1 CAATATATTTTAAGTCATGGTAACTTTATAAAAACAT
77223144 ATTATTAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (40 bp):
CAATATATTTTAAGTCATGGTAACTTTATAAAAACATGAT
Found at i:77224871 original size:27 final size:27
Alignment explanation
Indices: 77224806--77224875 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
77224796 CAAATTTTAG
* *
77224806 ATTGTTGGATTTTGATATATGTCTTGA
1 ATTGTTGGATATTGATATATGTCTTAA
* *
77224833 ATTGGTTAGATATTGAT-TATGTTTTAA
1 ATT-GTTGGATATTGATATATGTCTTAA
77224860 CATTGTTGGATATTGA
1 -ATTGTTGGATATTGA
77224876 ATTGATTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50
Consensus pattern (27 bp):
ATTGTTGGATATTGATATATGTCTTAA
Found at i:77224880 original size:32 final size:33
Alignment explanation
Indices: 77224844--77224911 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 33
77224834 TTGGTTAGAT
77224844 ATTG-ATTATGTTTTAA-CATTGTTGGATATTGA
1 ATTGTATTATGTTTTAAGC-TTGTTGGATATTGA
77224876 ATTGATTATTATGTTTTAAGCTTGTTGGATATTGA
1 ATTG--TATTATGTTTTAAGCTTGTTGGATATTGA
77224911 A
1 A
77224912 ATTATTGACA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
32 4 0.12
35 27 0.84
36 1 0.03
ACGTcount: A:0.28, C:0.03, G:0.19, T:0.50
Consensus pattern (33 bp):
ATTGTATTATGTTTTAAGCTTGTTGGATATTGA
Found at i:77225847 original size:14 final size:14
Alignment explanation
Indices: 77225824--77225865 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
77225814 ACAGAAAAGT
*
77225824 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
77225838 AAATCATTTTACGG
1 AAAACATTTTACAG
77225852 AAAACATTTTACAG
1 AAAACATTTTACAG
77225866 CCAATCAAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.31
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:77225849 original size:34 final size:35
Alignment explanation
Indices: 77225789--77225855 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
77225779 CAAACACCAG
* *
77225789 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
77225824 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
77225856 CATTTTACAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:77230270 original size:21 final size:25
Alignment explanation
Indices: 77230218--77230264 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
77230208 AAAAAATACT
77230218 AACAATATT-AAAATAAATATTTTTG
1 AACAA-ATTGAAAATAAATATTTTTG
77230243 AACAAATTGAAAATAAAT-TTTT
1 AACAAATTGAAAATAAATATTTT
77230265 AAAAATATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (25 bp):
AACAAATTGAAAATAAATATTTTTG
Found at i:77231060 original size:26 final size:27
Alignment explanation
Indices: 77231031--77231086 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
77231021 TTAAAATTCA
77231031 TTGAGTATTAATATTTCA-ATTAATAT
1 TTGAGTATTAATATTTCAGATTAATAT
*
77231057 TTGAGTGTTAATATTTCAGTATTAATAT
1 TTGAGTATTAATATTTCAG-ATTAATAT
77231085 TT
1 TT
77231087 ATCACAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 17 0.63
28 10 0.37
ACGTcount: A:0.34, C:0.04, G:0.11, T:0.52
Consensus pattern (27 bp):
TTGAGTATTAATATTTCAGATTAATAT
Found at i:77231069 original size:14 final size:14
Alignment explanation
Indices: 77231008--77231086 Score: 72
Period size: 14 Copynumber: 5.6 Consensus size: 14
77230998 ATATTTTAAC
*
77231008 TAATATTTGAGTGT
1 TAATATTTGAGTAT
*
77231022 TAAAATTCATTGAGTAT
1 TAATA-T--TTGAGTAT
*
77231039 TAATATTTCA--AT
1 TAATATTTGAGTAT
*
77231051 TAATATTTGAGTGT
1 TAATATTTGAGTAT
*
77231065 TAATATTTCAGTAT
1 TAATATTTGAGTAT
77231079 TAATATTT
1 TAATATTT
77231087 ATCACAAGAA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
12 11 0.21
14 28 0.54
15 1 0.02
16 1 0.02
17 11 0.21
ACGTcount: A:0.35, C:0.04, G:0.11, T:0.49
Consensus pattern (14 bp):
TAATATTTGAGTAT
Found at i:77231705 original size:23 final size:26
Alignment explanation
Indices: 77231678--77231736 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 26
77231668 ATTATTAACA
77231678 AATATTTGAATTAAATA-ATTA-AT-
1 AATATTTGAATTAAATATATTACATG
*
77231701 AATATTTTG-GTTAAATATATTACATG
1 AATA-TTTGAATTAAATATATTACATG
77231727 AATATTTGAA
1 AATATTTGAA
77231737 AAATAACTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 11 0.38
24 8 0.28
25 6 0.21
26 4 0.14
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (26 bp):
AATATTTGAATTAAATATATTACATG
Found at i:77232146 original size:10 final size:9
Alignment explanation
Indices: 77232068--77232243 Score: 69
Period size: 9 Copynumber: 18.9 Consensus size: 9
77232058 TATATAAAGC
*
77232068 TATAAAAAT
1 TATAAAAAA
77232077 TATAAAAAA
1 TATAAAAAA
*
77232086 TAAAAATAAACA
1 T-ATAA-AAA-A
77232098 TATAAAAAA
1 TATAAAAAA
*
77232107 TTTAGAAAAA
1 TATA-AAAAA
77232117 -ATTAAAAAA
1 TA-TAAAAAA
77232126 T-TAAAAAA
1 TATAAAAAA
77232134 TATAAAAATA
1 TATAAAAA-A
*
77232144 TATGAAAAA
1 TATAAAAAA
**
77232153 TGGAAATAAA
1 TATAAA-AAA
* *
77232163 -ATTAGAAA
1 TATAAAAAA
77232171 TAT---AAA
1 TATAAAAAA
77232177 TATAAATAAA
1 TATAAA-AAA
77232187 T-TCAAAAAA
1 TAT-AAAAAA
77232196 TATAGATAAAA
1 TATA-A-AAAA
*
77232207 TCTAAAAATA
1 TATAAAAA-A
**
77232217 TATATGAAA
1 TATAAAAAA
* *
77232226 TAGATAAATA
1 TATA-AAAAA
77232236 TATAAAAA
1 TATAAAAA
77232244 TTAAGACTAG
Statistics
Matches: 124, Mismatches: 23, Indels: 40
0.66 0.12 0.21
Matches are distributed among these distances:
6 6 0.05
8 11 0.09
9 47 0.38
10 45 0.36
11 13 0.10
12 2 0.02
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.26
Consensus pattern (9 bp):
TATAAAAAA
Found at i:77232220 original size:21 final size:19
Alignment explanation
Indices: 77232174--77232218 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
77232164 TTAGAAATAT
*
77232174 AAATATAAATAAATTCAAA
1 AAATATAAATAAAATCAAA
* *
77232193 AAATATAGATAAAATCTAA
1 AAATATAAATAAAATCAAA
77232212 AAATATA
1 AAATATA
77232219 TATGAAATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (19 bp):
AAATATAAATAAAATCAAA
Found at i:77236238 original size:22 final size:21
Alignment explanation
Indices: 77236212--77236252 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
77236202 TTAAAATAGT
77236212 AAAAATGTAATAATATTTTACA
1 AAAAATGTAAT-ATATTTTACA
* *
77236234 AAAAATTTTATATATTTTA
1 AAAAATGTAATATATTTTA
77236253 TGATTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
AAAAATGTAATATATTTTACA
Found at i:77241470 original size:3 final size:3
Alignment explanation
Indices: 77241462--77241503 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
77241452 ATGAAGCTTA
77241462 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
77241504 TTCAAAAATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:77243353 original size:20 final size:24
Alignment explanation
Indices: 77243307--77243353 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 24
77243297 CTTTATAAAA
*
77243307 TAAATTTATATTATAATATTTATT
1 TAAATTTATATTATAATATTTAGT
77243331 TAAA-TTATA-TA-AATA-TTAGT
1 TAAATTTATATTATAATATTTAGT
77243351 TAA
1 TAA
77243354 TTTTTTTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 7 0.32
21 4 0.18
22 2 0.09
23 5 0.23
24 4 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
TAAATTTATATTATAATATTTAGT
Found at i:77245283 original size:16 final size:16
Alignment explanation
Indices: 77245243--77245284 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
77245233 GCAATTAGAG
*
77245243 TTAGGGTTTTTGGATT
1 TTAGGGTTTTTAGATT
* *
77245259 TTTGAGTTTTTAGATT
1 TTAGGGTTTTTAGATT
77245275 TTAGGGTTTT
1 TTAGGGTTTT
77245285 AAGGAAAAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.26, T:0.60
Consensus pattern (16 bp):
TTAGGGTTTTTAGATT
Found at i:77246017 original size:96 final size:96
Alignment explanation
Indices: 77245909--77246230 Score: 394
Period size: 96 Copynumber: 3.4 Consensus size: 96
77245899 AACAACTAGC
* *
77245909 TTTATTTGA-TTTTTCCTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTAAAAATTTAT
1 TTTATTTAATTTTTTCCTTAAAAACCCTAAA-ACTAAACCCTAATCTAATTTTTTAAAAATTTAT
*
77245973 AATTAATTTACTCAAGTATCCCTAAACCCTAT
65 AATTAATTTACTCAAGTAACCCTAAACCCTAT
* *
77246005 TTTATTTAATTTTTTTCCTTAAAAA-CC-----CTAAACCCTAATCTATTTTTTTTAAAAAATTA
1 TTTATTTAA-TTTTTTCCTTAAAAACCCTAAAACTAAACCCTAATCTA-ATTTTTTAAAAATTTA
*
77246064 TAATTAATTTACTCAAGTAACCCTAAACCCTAA
64 TAATTAATTTACTCAAGTAACCCTAAACCCTAT
* * *
77246097 TTTATTTGATTTTTTCCTTAAAAACCATAAACATTAAACCCTAATCTAATTTTTT-AAAATTTAT
1 TTTATTTAATTTTTTCCTTAAAAACCCTAAA-ACTAAACCCTAATCTAATTTTTTAAAAATTTAT
* * *
77246161 AATTAATTTAATTAAGAAACCCTAAACCCT-T
65 AATTAATTTACTCAAGTAACCCTAAACCCTAT
*
77246192 ATTTATTTAATTTTTTTCCTT-AAAATCCTAAAATCTAAA
1 -TTTATTTAA-TTTTTTCCTTAAAAACCCTAAAA-CTAAA
77246231 ACCTCAAAAA
Statistics
Matches: 194, Mismatches: 19, Indels: 26
0.81 0.08 0.11
Matches are distributed among these distances:
91 29 0.15
92 54 0.28
95 1 0.01
96 64 0.33
97 18 0.09
98 28 0.14
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.43
Consensus pattern (96 bp):
TTTATTTAATTTTTTCCTTAAAAACCCTAAAACTAAACCCTAATCTAATTTTTTAAAAATTTATA
ATTAATTTACTCAAGTAACCCTAAACCCTAT
Found at i:77246074 original size:92 final size:92
Alignment explanation
Indices: 77245940--77246216 Score: 373
Period size: 92 Copynumber: 3.0 Consensus size: 92
77245930 AACCCTAAAT
* *
77245940 ACTAAACCCCAATCTAATTTTTTAAAAATTTATAATTAATTTACTCAAGTATCCCTAAACCCTAT
1 ACTAAACCCTAATCTAATTTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAT
77246005 TTTATTTAATTTTTTTCCTTAAAAACC
66 TTTATTTAATTTTTTTCCTTAAAAACC
* *
77246032 -CTAAACCCTAATCTATTTTTTTTAAAAAATTATAATTAATTTACTCAAGTAACCCTAAACCCTA
1 ACTAAACCCTAATCTA-ATTTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTA
* *
77246096 ATTTATTTGA-TTTTTTCCTTAAAAACC
65 TTTTATTTAATTTTTTTCCTTAAAAACC
* * *
77246123 ATAAACATTAAACCCTAATCTAATTTTTT-AAAATTTATAATTAATTTAATTAAGAAACCCTAAA
1 ----AC--TAAACCCTAATCTAATTTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAA
77246187 CCCT-TATTTATTTAATTTTTTTCCTTAAAA
60 CCCTAT-TTTATTTAATTTTTTTCCTTAAAA
77246217 TCCTAAAATC
Statistics
Matches: 162, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
91 31 0.19
92 53 0.33
96 44 0.27
97 20 0.12
98 14 0.09
ACGTcount: A:0.39, C:0.17, G:0.01, T:0.43
Consensus pattern (92 bp):
ACTAAACCCTAATCTAATTTTTTAAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAT
TTTATTTAATTTTTTTCCTTAAAAACC
Found at i:77246276 original size:188 final size:188
Alignment explanation
Indices: 77245909--77246278 Score: 401
Period size: 188 Copynumber: 2.0 Consensus size: 188
77245899 AACAACTAGC
* *
77245909 TTTATTTGATTTTTCCTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTAAAAATTTATA
1 TTTATTTGATTTTTCCTTAAAAACCATAAACACTAAACCCCAATCTAATTTTTTAAAAATTTATA
* * * *
77245974 ATTAATTTACTCAAGTATCCCTAAACCCTATTTTATTTAATTTTTTTCCTTAAAAACCCTAAACC
66 ATTAATTTAATCAAGAAACCCTAAACCCTATTTTATTTAATTTTTTTCCTTAAAAACCCTAAAAC
* ******** * * **
77246039 CTAATCTATTTTTTTTAAAAAATTATAATTAATTTACTCAAGTAACCCTAAACCCTAA
131 CTAACCTAAAAACCCCAAAAAACTATAATTAATTTACTAAAAAAACCCTAAACCCTAA
* *
77246097 TTTATTTGATTTTTTCCTTAAAAACCATAAACATTAAACCCTAATCTAATTTTTT-AAAATTTAT
1 TTTATTTGA-TTTTTCCTTAAAAACCATAAACACTAAACCCCAATCTAATTTTTTAAAAATTTAT
* *
77246161 AATTAATTTAATTAAGAAACCCTAAACCCT-TATTTATTTAATTTTTTTCCTT-AAAATCCTAAA
65 AATTAATTTAATCAAGAAACCCTAAACCCTAT-TTTATTTAATTTTTTTCCTTAAAAACCCTAAA
* ** *
77246224 ATCTAAAACCTCAAAAACCCCAAAACCCTA-ACTCTAA-TTAC-AAAAAAACCCTAAA
129 ACCT--AACCT-AAAAACCCCAAAAAACTATAAT-TAATTTACTAAAAAAACCCTAAA
77246279 TCCAAAAAAA
Statistics
Matches: 149, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
187 13 0.09
188 75 0.50
189 51 0.34
190 10 0.07
ACGTcount: A:0.40, C:0.19, G:0.01, T:0.39
Consensus pattern (188 bp):
TTTATTTGATTTTTCCTTAAAAACCATAAACACTAAACCCCAATCTAATTTTTTAAAAATTTATA
ATTAATTTAATCAAGAAACCCTAAACCCTATTTTATTTAATTTTTTTCCTTAAAAACCCTAAAAC
CTAACCTAAAAACCCCAAAAAACTATAATTAATTTACTAAAAAAACCCTAAACCCTAA
Found at i:77248993 original size:314 final size:314
Alignment explanation
Indices: 77248422--77249050 Score: 1116
Period size: 314 Copynumber: 2.0 Consensus size: 314
77248412 TATGTTGGTA
* *
77248422 TTGTTAGAGTATGCCCAAAGATCAATCATGAGATGGTTGTAACAACATACTTGATTTATCATGTT
1 TTGTTAGAGTATGCCCAAAGATCAATCATGAGAGGGTTGTAACAAAATACTTGATTTATCATGTT
77248487 TATTAATATAAGACGTTACCATTATTATTTCAGTTTCTTTTCTGTGTGTATAAATAAACTCTTTT
66 TATTAATATAAGACGTTACCATTATTATTTCAGTTTCTTTTCTGTGTGTATAAATAAACTCTTTT
*
77248552 ATAATAATGTCCTAAGAATAATATGATTATTCTTAAAAGATCCTTAGTCAAGTATTATTGTTGGA
131 ATAATAATGTCCTAAGAATAATATGATTATTCTTAAAAGATCCTTAGCCAAGTATTATTGTTGGA
* ** *
77248617 TAGGACAACGATAATACAGTAAGACTAACATGTAGTTGATTGATGATAAAGAGTTGTCATTGATA
196 TAGGAAAAAAATAATACAGTAAGACTAACATGTAGTTGATTGATGATAAAGAGTTATCATTGATA
*
77248682 TGGAATGTCAGAATCGATGCATGAATATGTGTGTTAGAGAACAACATATTGGAC
261 TGGAATATCAGAATCGATGCATGAATATGTGTGTTAGAGAACAACATATTGGAC
*
77248736 TTGTTAGAGTATGCCCAAAGATCAATCATGAGAGGGTTGTAATAAAATACTTG-TTTAATCATGT
1 TTGTTAGAGTATGCCCAAAGATCAATCATGAGAGGGTTGTAACAAAATACTTGATTT-ATCATGT
* *
77248800 TTATTAATATAAGGCGTTACCATTATTATTTCAGTTTCTTTTCTGTGTGTATAAATAAACTGTTT
65 TTATTAATATAAGACGTTACCATTATTATTTCAGTTTCTTTTCTGTGTGTATAAATAAACTCTTT
*
77248865 TCTAATAATGTCCTAAGAATAATATGATTATTCTTAAAAGATCCTTAGCCAAGTATTATTGTTGG
130 TATAATAATGTCCTAAGAATAATATGATTATTCTTAAAAGATCCTTAGCCAAGTATTATTGTTGG
* *
77248930 ATAGGAAAAAAATAATGCATTAAGACTAACATGTAGTTGATTGATGATAAAGAGTTATCATTGAT
195 ATAGGAAAAAAATAATACAGTAAGACTAACATGTAGTTGATTGATGATAAAGAGTTATCATTGAT
77248995 ATGGAATATCAGAATCGATGCATGAATATGTGTGTTAGAGAACAACATATTGGAC
260 ATGGAATATCAGAATCGATGCATGAATATGTGTGTTAGAGAACAACATATTGGAC
77249050 T
1 T
77249051 GACCCATTAT
Statistics
Matches: 300, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
313 3 0.01
314 297 0.99
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36
Consensus pattern (314 bp):
TTGTTAGAGTATGCCCAAAGATCAATCATGAGAGGGTTGTAACAAAATACTTGATTTATCATGTT
TATTAATATAAGACGTTACCATTATTATTTCAGTTTCTTTTCTGTGTGTATAAATAAACTCTTTT
ATAATAATGTCCTAAGAATAATATGATTATTCTTAAAAGATCCTTAGCCAAGTATTATTGTTGGA
TAGGAAAAAAATAATACAGTAAGACTAACATGTAGTTGATTGATGATAAAGAGTTATCATTGATA
TGGAATATCAGAATCGATGCATGAATATGTGTGTTAGAGAACAACATATTGGAC
Found at i:77257263 original size:26 final size:26
Alignment explanation
Indices: 77257225--77257282 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
77257215 CCCGATATAT
*
77257225 GGCTCTTCATGAGCTTTCC-GATTAAA
1 GGCTCTTCATGAG-GTTCCTGATTAAA
** *
77257251 GGCTCTTTGTGAGGTTCCTGATTAAT
1 GGCTCTTCATGAGGTTCCTGATTAAA
77257277 GGCTCT
1 GGCTCT
77257283 CCGGAGCTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (26 bp):
GGCTCTTCATGAGGTTCCTGATTAAA
Found at i:77257473 original size:24 final size:25
Alignment explanation
Indices: 77257335--77257475 Score: 103
Period size: 24 Copynumber: 5.8 Consensus size: 25
77257325 GGCTATTCGG
* **
77257335 AGCTTCCTGGTTA-ATGGCTCTTCGA
1 AGCTTCCT-GTTATATGGCTCATATA
* * *
77257360 AGCTACCCGTTAT-TGGCTCGTATA
1 AGCTTCCTGTTATATGGCTCATATA
* * *
77257384 AGCTTCCTG-AATATGGCTCTTATG
1 AGCTTCCTGTTATATGGCTCATATA
*** *
77257408 AGCTTCCTGTTATACATCCCGA-ATA
1 AGCTTCCTGTTATATGGCTC-ATATA
*
77257433 AGCTTCCTGTTACATGGCTCATATA
1 AGCTTCCTGTTATATGGCTCATATA
77257458 AGCTT-CTGTTATATGGCT
1 AGCTTCCTGTTATATGGCT
77257476 TGAGAGAGTG
Statistics
Matches: 88, Mismatches: 23, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
23 2 0.02
24 50 0.57
25 36 0.41
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.36
Consensus pattern (25 bp):
AGCTTCCTGTTATATGGCTCATATA
Found at i:77258827 original size:24 final size:24
Alignment explanation
Indices: 77258800--77258855 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
77258790 TGATTTGTAA
**
77258800 ATTTTGGTAATGCTTTGTAACCCT
1 ATTTTGGTAATGCTCCGTAACCCT
* *
77258824 ATTTCGGTAATGCTCCGTAATCCT
1 ATTTTGGTAATGCTCCGTAACCCT
*
77258848 ATTCTGGT
1 ATTTTGGT
77258856 GACGAATATG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.43
Consensus pattern (24 bp):
ATTTTGGTAATGCTCCGTAACCCT
Found at i:77270196 original size:21 final size:21
Alignment explanation
Indices: 77270155--77270196 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
77270145 CTTTTGTCTA
* *
77270155 AAATATGAATTTGATTGAATT
1 AAATATGAATTTGACTAAATT
77270176 AAATATGAA-TTGTACTAAATT
1 AAATATGAATTTG-ACTAAATT
77270197 GAGTTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.45, C:0.02, G:0.12, T:0.40
Consensus pattern (21 bp):
AAATATGAATTTGACTAAATT
Found at i:77270751 original size:25 final size:23
Alignment explanation
Indices: 77270697--77270751 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
77270687 GGCTCTTTGT
*
77270697 GAGCTTCCTAATATGGCTCACTT
1 GAGCTTCCTAATATGGCTCACTG
*
77270720 GAACTTCCTGATATATGGCT-ATCTG
1 GAGCTTCCT-A-ATATGGCTCA-CTG
77270745 GAGCTTC
1 GAGCTTC
77270752 ACGTTAATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 8 0.31
24 2 0.08
25 16 0.62
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (23 bp):
GAGCTTCCTAATATGGCTCACTG
Found at i:77273275 original size:27 final size:25
Alignment explanation
Indices: 77273245--77273296 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
77273235 TTACTCTAGT
*
77273245 TGACACTTCCCATTCAAGGTACTATTA
1 TGACACTTACCATTCAA-GT-CTATTA
*
77273272 TGACACTTACGATTCAAGTCTATTA
1 TGACACTTACCATTCAAGTCTATTA
77273297 CAACTTTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 6 0.26
26 2 0.09
27 15 0.65
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (25 bp):
TGACACTTACCATTCAAGTCTATTA
Found at i:77277573 original size:138 final size:138
Alignment explanation
Indices: 77277359--77278328 Score: 1904
Period size: 138 Copynumber: 7.0 Consensus size: 138
77277349 CTAAAGATTA
*
77277359 AGTGGCATTCTAAGCTATTCATTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
1 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
*
77277424 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTATTTGGGTTTTCATTCTTCTTTGCGTAA
66 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
77277489 AAATATTG
131 AAATATTG
77277497 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
1 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
77277562 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
66 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
77277627 AAATATTG
131 AAATATTG
77277635 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
1 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
77277700 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
66 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
77277765 AAATATTG
131 AAATATTG
77277773 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
1 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
77277838 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
66 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
77277903 AAATATTG
131 AAATATTG
77277911 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
1 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
77277976 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
66 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
77278041 AAATATTG
131 AAATATTG
77278049 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
1 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
77278114 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
66 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
77278179 AAATATTG
131 AAATATTG
77278187 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
1 AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
77278252 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
66 TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
* *
77278317 AAAGATTT
131 AAATATTG
77278325 AGTG
1 AGTG
77278329 ACACTCTAGA
Statistics
Matches: 828, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 828 1.00
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (138 bp):
AGTGGCATTCTAAGCTATTCACTTTCTCCACTAGTCTTAACAATTATGAGTAAAGCTAGTAGCCA
TCTAGAGATGTGACTGATCGAGTAACCGGGGTGGGGTGTTTGGGTTTTCATTCTTCTTTGCGTAA
AAATATTG
Found at i:77280550 original size:21 final size:19
Alignment explanation
Indices: 77280524--77280562 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 19
77280514 AGGGAAGGAA
77280524 AAGAAGGAAGAAGAAAAAAAT
1 AAGAA-GAA-AAGAAAAAAAT
77280545 AAGAAGAAAAGAAAAAAA
1 AAGAAGAAAAGAAAAAAA
77280563 AACTTAACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 3 0.17
21 5 0.28
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.03
Consensus pattern (19 bp):
AAGAAGAAAAGAAAAAAAT
Found at i:77284134 original size:23 final size:22
Alignment explanation
Indices: 77284104--77284172 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 22
77284094 AAAAAATTAT
77284104 AAAAATTTGTAATTAATTTATAA
1 AAAAATTTGTAA-TAATTTATAA
77284127 AAAAATTTGTAACT--TTTA-AA
1 AAAAATTTGTAA-TAATTTATAA
*
77284147 AAAAA-TTGTAAAAATATTATAA
1 AAAAATTTGTAATAAT-TTATAA
77284169 AAAA
1 AAAA
77284173 TTATAAAATC
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
19 6 0.15
20 8 0.20
21 7 0.17
22 6 0.15
23 13 0.32
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (22 bp):
AAAAATTTGTAATAATTTATAA
Found at i:77284169 original size:11 final size:10
Alignment explanation
Indices: 77284146--77284180 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
77284136 TAACTTTTAA
*
77284146 AAAAAATTGT
1 AAAAAATTAT
77284156 AAAAATATTAT
1 AAAAA-ATTAT
77284167 AAAAAATTAT
1 AAAAAATTAT
77284177 AAAA
1 AAAA
77284181 TCAAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:77284172 original size:21 final size:21
Alignment explanation
Indices: 77284092--77284180 Score: 67
Period size: 21 Copynumber: 4.2 Consensus size: 21
77284082 TTATTAAAAA
* *
77284092 TAAAAAAATTATAAAAATTTG
1 TAAAAATATTATAAAAAATTG
*
77284113 TAATTAAT-TTATAAAAAAATTTG
1 TAA-AAATATTAT-AAAAAA-TTG
* * *
77284136 T--AACTTTTAAAAAAAATTG
1 TAAAAATATTATAAAAAATTG
*
77284155 TAAAAATATTATAAAAAATTA
1 TAAAAATATTATAAAAAATTG
77284176 TAAAA
1 TAAAA
77284181 TCAAATAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
19 4 0.08
20 8 0.15
21 29 0.56
22 7 0.13
23 4 0.08
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (21 bp):
TAAAAATATTATAAAAAATTG
Found at i:77284309 original size:16 final size:15
Alignment explanation
Indices: 77284279--77284315 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
77284269 GTGGAGAGGT
77284279 TACATACATCATACA
1 TACATACATCATACA
*
77284294 TACATGCATGCATACA
1 TACATACAT-CATACA
77284310 TACATA
1 TACATA
77284316 TTCACTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.43, C:0.24, G:0.05, T:0.27
Consensus pattern (15 bp):
TACATACATCATACA
Found at i:77284697 original size:19 final size:18
Alignment explanation
Indices: 77284637--77284701 Score: 67
Period size: 19 Copynumber: 3.4 Consensus size: 18
77284627 TTCTTTTAAC
*
77284637 TTTATAAAATTTTATTATT
1 TTTATAATATTTTA-TATT
* *
77284656 TTTTTTATATTTCTATATAT
1 TTTATAATATTT-TATAT-T
77284676 TTTATAATATTTTATGATT
1 TTTATAATATTTTAT-ATT
77284695 TTTATAA
1 TTTATAA
77284702 AAATTTTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 23 0.61
20 15 0.39
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTATAATATTTTATATT
Found at i:77284714 original size:19 final size:19
Alignment explanation
Indices: 77284692--77284758 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
77284682 ATATTTTATG
77284692 ATTTTTATAAAAATTTTTA
1 ATTTTTATAAAAATTTTTA
* * *
77284711 ATTTTTA-ATAACTTTTAA
1 ATTTTTATAAAAATTTTTA
* *
77284729 ATTTTTTTAAAAATTTATTG
1 ATTTTTATAAAAATTT-TTA
77284749 ATTTTT-TAAA
1 ATTTTTATAAA
77284759 TTTTTTTGTC
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
18 14 0.37
19 17 0.45
20 7 0.18
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (19 bp):
ATTTTTATAAAAATTTTTA
Found at i:77285194 original size:13 final size:13
Alignment explanation
Indices: 77285159--77285224 Score: 52
Period size: 13 Copynumber: 5.5 Consensus size: 13
77285149 TTAAAGACAA
77285159 ATAT-TCTATTAT
1 ATATATCTATTAT
*
77285171 ATATATGTATTAT
1 ATATATCTATTAT
* *
77285184 TTGTATCTATT-T
1 ATATATCTATTAT
*
77285196 ATAAAT-TATT-T
1 ATATATCTATTAT
*
77285207 ATA-ATCTATCAT
1 ATATATCTATTAT
77285219 ATATAT
1 ATATAT
77285225 ATAAGCACAA
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
10 2 0.05
11 11 0.26
12 12 0.29
13 17 0.40
ACGTcount: A:0.36, C:0.06, G:0.03, T:0.55
Consensus pattern (13 bp):
ATATATCTATTAT
Found at i:77286758 original size:34 final size:34
Alignment explanation
Indices: 77286719--77286801 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 34
77286709 AGAATTTAAT
*
77286719 TATGCTTTTAACAGAACAATACAGTAAC-AATAAA
1 TATGCTTTTAACAGAACAATACAATAACAAAT-AA
* ** *
77286753 TATGCTTATAACAGTTCAATACAATAGCAAATAA
1 TATGCTTTTAACAGAACAATACAATAACAAATAA
77286787 TATG-TTTATAACAGA
1 TATGCTTT-TAACAGA
77286802 TAAACTCAGT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
33 2 0.05
34 35 0.88
35 3 0.08
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (34 bp):
TATGCTTTTAACAGAACAATACAATAACAAATAA
Found at i:77286815 original size:34 final size:34
Alignment explanation
Indices: 77286751--77286830 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 34
77286741 AGTAACAATA
* * *
77286751 AATATGCTTATAACAGTTCAATACAATAGCAAAT
1 AATATGTTTATAACAGATAAATACAATAGCAAAT
*
77286785 AATATGTTTATAACAGATAAACT-CAGTAGCAAAT
1 AATATGTTTATAACAGATAAA-TACAATAGCAAAT
77286819 AATCATGTTTAT
1 AAT-ATGTTTAT
77286831 TAAGTGTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
34 31 0.77
35 9 0.22
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (34 bp):
AATATGTTTATAACAGATAAATACAATAGCAAAT
Found at i:77290886 original size:28 final size:28
Alignment explanation
Indices: 77290854--77291000 Score: 285
Period size: 28 Copynumber: 5.2 Consensus size: 28
77290844 TATCTTAGGA
77290854 TGTTACATTTTAATTATCACTTAATTAG
1 TGTTACATTTTAATTATCACTTAATTAG
77290882 TGTTACATTTTAATTATCACTTAATTAG
1 TGTTACATTTTAATTATCACTTAATTAG
77290910 TGTTACATTTTAATTATCACTTAATTAG
1 TGTTACATTTTAATTATCACTTAATTAG
77290938 TGTTACATTTTAATTATCACTTAATTAG
1 TGTTACATTTTAATTATCACTTAATTAG
77290966 TGTTACATTTTAATTATCACTTAATTAG
1 TGTTACATTTTAATTATCACTTAATTAG
*
77290994 TATTACA
1 TGTTACA
77291001 GTTATATTTA
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 118 1.00
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.50
Consensus pattern (28 bp):
TGTTACATTTTAATTATCACTTAATTAG
Found at i:77290896 original size:17 final size:17
Alignment explanation
Indices: 77290874--77290981 Score: 63
Period size: 17 Copynumber: 7.4 Consensus size: 17
77290864 TAATTATCAC
77290874 TTAATTAGTGTTACATT
1 TTAATTAGTGTTACATT
*
77290891 TTAATTA----T-CA-C
1 TTAATTAGTGTTACATT
77290902 TTAATTAGTGTTACATT
1 TTAATTAGTGTTACATT
*
77290919 TTAATTA----T-CA-C
1 TTAATTAGTGTTACATT
77290930 TTAATTAGTGTTACATT
1 TTAATTAGTGTTACATT
*
77290947 TTAATTA----T-CA-C
1 TTAATTAGTGTTACATT
77290958 TTAATTAGTGTTACATT
1 TTAATTAGTGTTACATT
77290975 TTAATTA
1 TTAATTA
77290982 TCACTTAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 36
0.61 0.06 0.33
Matches are distributed among these distances:
11 21 0.31
12 6 0.09
13 3 0.04
15 3 0.04
16 6 0.09
17 28 0.42
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.51
Consensus pattern (17 bp):
TTAATTAGTGTTACATT
Found at i:77291208 original size:3 final size:3
Alignment explanation
Indices: 77291200--77291229 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
77291190 TCTTTTTACC
77291200 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
77291230 AAAAAAGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:77292434 original size:34 final size:35
Alignment explanation
Indices: 77292369--77292435 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
77292359 TCAAATAGAT
* * * *
77292369 CAATACGGTAGCATTTAATTATGCTTTTAACAGAA
1 CAATACGGTAACAATCAATTATGCTTATAACAGAA
77292404 CAATACGGTAACAATCAA-TATGCTTATAACAG
1 CAATACGGTAACAATCAATTATGCTTATAACAG
77292436 TTTAATACAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 13 0.46
35 15 0.54
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30
Consensus pattern (35 bp):
CAATACGGTAACAATCAATTATGCTTATAACAGAA
Found at i:77293777 original size:3 final size:3
Alignment explanation
Indices: 77293769--77293814 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
77293759 TCTTTTTACC
77293769 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
77293815 ACATGAAGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:77294735 original size:20 final size:19
Alignment explanation
Indices: 77294674--77294736 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
77294664 CATTTATCAC
*
77294674 AATTGAAATTTTTTATAATA
1 AATT-AAATATTTTATAATA
*
77294694 AATTATATATTTTATAATTA
1 AATTAAATATTTTATAA-TA
77294714 AATTAAAAGTATTTTAT-ATA
1 AATT-AAA-TATTTTATAATA
77294734 AAT
1 AAT
77294737 ACTAATTACA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 11 0.30
20 15 0.41
21 3 0.08
22 8 0.22
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (19 bp):
AATTAAATATTTTATAATA
Found at i:77295003 original size:3 final size:3
Alignment explanation
Indices: 77294997--77295057 Score: 95
Period size: 3 Copynumber: 20.3 Consensus size: 3
77294987 AACAAATTAT
*
77294997 TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
77295045 TTA TAA TTA TAA T
1 TAA TAA TAA TAA T
77295058 TTAATTAAAC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:77298250 original size:23 final size:20
Alignment explanation
Indices: 77298218--77298275 Score: 57
Period size: 23 Copynumber: 2.8 Consensus size: 20
77298208 GGCCTGGCCT
77298218 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
77298240 ATTTATTTTAAAAAATAAAAA
1 ATTTATTTT-AAAAATAAAAA
*
77298261 A-ATATTTTAAAAATA
1 ATTTATTTTAAAAATA
77298276 TTTTAGTATG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 7 0.21
20 6 0.18
21 5 0.15
22 4 0.12
23 9 0.27
24 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:77299920 original size:21 final size:21
Alignment explanation
Indices: 77299889--77299939 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
77299879 AAGCCAAAGC
77299889 AGCAAG-AACTAACTTAAATA
1 AGCAAGAAACTAACTTAAATA
*
77299909 AGTAAGAAACTAACTTAAATA
1 AGCAAGAAACTAACTTAAATA
77299930 AGCAAGAAAC
1 AGCAAGAAAC
77299940 AATAAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 5 0.18
21 23 0.82
ACGTcount: A:0.57, C:0.14, G:0.12, T:0.18
Consensus pattern (21 bp):
AGCAAGAAACTAACTTAAATA
Found at i:77303763 original size:23 final size:22
Alignment explanation
Indices: 77303737--77303800 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
77303727 TATGTTCTGT
77303737 ATTAATATTTATATATTTTTATA
1 ATTAA-ATTTATATATTTTTATA
* * *
77303760 ATTAAATTTAAATAAATTATATA
1 ATTAAATTTATAT-ATTTTTATA
* *
77303783 TTTAAATTTATTTATTTT
1 ATTAAATTTATATATTTT
77303801 AAATGTAGAT
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
22 10 0.31
23 22 0.69
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTAAATTTATATATTTTTATA
Found at i:77304024 original size:12 final size:11
Alignment explanation
Indices: 77303996--77304029 Score: 50
Period size: 11 Copynumber: 2.9 Consensus size: 11
77303986 ATCTTTAATT
77303996 TTTATTAAAAA
1 TTTATTAAAAA
77304007 TTTATTAAAAA
1 TTTATTAAAAA
77304018 TTGTATTTAAAA
1 TT-TA-TTAAAA
77304030 CGCATGGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 13 0.62
12 2 0.10
13 6 0.29
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (11 bp):
TTTATTAAAAA
Found at i:77304776 original size:22 final size:24
Alignment explanation
Indices: 77304751--77304794 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
77304741 CGTGTATTTC
77304751 ATAAAA-TTAAAAAAT-AATAATA
1 ATAAAATTTAAAAAATCAATAATA
*
77304773 ATAAAATTTTAAAAATCAATAA
1 ATAAAATTTAAAAAATCAATAA
77304795 ATTTGAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 8 0.42
24 5 0.26
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (24 bp):
ATAAAATTTAAAAAATCAATAATA
Found at i:77305579 original size:29 final size:29
Alignment explanation
Indices: 77305546--77305658 Score: 86
Period size: 29 Copynumber: 3.9 Consensus size: 29
77305536 AATATTTGAC
77305546 AAGTTCAAGTACCAAATTGAACAAAAAAA
1 AAGTTCAAGTACCAAATTGAACAAAAAAA
* * * ***
77305575 AAGTTCAGGTACCAAATTAGGA-AAGAGTC
1 AAGTTCAAGTACCAAATT-GAACAAAAAAA
* ***
77305604 AAGTTCAGGTACCAAATTGAACTCCAAAA
1 AAGTTCAAGTACCAAATTGAACAAAAAAA
* * *
77305633 AAGATCAAATACCAAATT-AAGAAAAA
1 AAGTTCAAGTACCAAATTGAACAAAAA
77305659 GTGTCAAGCT
Statistics
Matches: 62, Mismatches: 20, Indels: 5
0.71 0.23 0.06
Matches are distributed among these distances:
28 6 0.10
29 54 0.87
30 2 0.03
ACGTcount: A:0.52, C:0.15, G:0.14, T:0.19
Consensus pattern (29 bp):
AAGTTCAAGTACCAAATTGAACAAAAAAA
Found at i:77305678 original size:60 final size:58
Alignment explanation
Indices: 77305545--77305689 Score: 159
Period size: 58 Copynumber: 2.5 Consensus size: 58
77305535 AAATATTTGA
* ** *
77305545 CAAGTTCAAGTACCAAATTGAACAAAAAAAAAGTTCAGGTACCAAATTAGGAAAGAGT
1 CAAGTTCAAGTACCAAATTGAACAAAAAAAAAGATCAAATACCAAATTAGAAAAGAGT
* *** *
77305603 CAAGTTCAGGTACCAAATTGAACTCCAAAAAAGATCAAATACCAAATTAAGAAAAAGTGT
1 CAAGTTCAAGTACCAAATTGAACAAAAAAAAAGATCAAATACCAAATT-AG-AAAAGAGT
*
77305663 CAAGCTT-AAGTACCAAATT-AAGAAAAA
1 CAAG-TTCAAGTACCAAATTGAACAAAAA
77305690 GTGTCAAGTT
Statistics
Matches: 70, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
58 41 0.59
59 6 0.09
60 21 0.30
61 2 0.03
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.19
Consensus pattern (58 bp):
CAAGTTCAAGTACCAAATTGAACAAAAAAAAAGATCAAATACCAAATTAGAAAAGAGT
Found at i:77305680 original size:31 final size:31
Alignment explanation
Indices: 77305642--77305711 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
77305632 AAAGATCAAA
77305642 TACCAAATTAAGAAAAAGTGTCAAGCTTAAG
1 TACCAAATTAAGAAAAAGTGTCAAGCTTAAG
*
77305673 TACCAAATTAAGAAAAAGTGTCAAGTTTAAG
1 TACCAAATTAAGAAAAAGTGTCAAGCTTAAG
77305704 TACCAAAT
1 TACCAAAT
77305712 ATTATATTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.49, C:0.13, G:0.14, T:0.24
Consensus pattern (31 bp):
TACCAAATTAAGAAAAAGTGTCAAGCTTAAG
Found at i:77306908 original size:57 final size:56
Alignment explanation
Indices: 77306790--77306897 Score: 162
Period size: 57 Copynumber: 1.9 Consensus size: 56
77306780 CAAGTTTTGT
** * *
77306790 TTTTCAGATGTTACAAGATATGGGGCTGCAATGATTATATCTGAATTTTCTTTACCA
1 TTTTCAGATGTTACAAGATATGGGGCTGCAATGATTATATCTGAACATGC-TCACCA
77306847 TTTTCAGATGTTACAAGATATGGGGCTGCAATGATTATATCTGAAACATGC
1 TTTTCAGATGTTACAAGATATGGGGCTGCAATGATTATATCTG-AACATGC
77306898 CACAGGTTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
57 43 0.91
58 4 0.09
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (56 bp):
TTTTCAGATGTTACAAGATATGGGGCTGCAATGATTATATCTGAACATGCTCACCA
Found at i:77310957 original size:10 final size:10
Alignment explanation
Indices: 77310932--77310995 Score: 56
Period size: 10 Copynumber: 6.4 Consensus size: 10
77310922 CTTATTAAAA
77310932 CATAACATAT
1 CATAACATAT
** *
77310942 TGTATCATAT
1 CATAACATAT
* *
77310952 CATATCATTT
1 CATAACATAT
* *
77310962 CGTAACATAG
1 CATAACATAT
*
77310972 CGTAACATAT
1 CATAACATAT
77310982 CATAACATAT
1 CATAACATAT
77310992 CATA
1 CATA
77310996 TCCTACCCCC
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
10 42 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (10 bp):
CATAACATAT
Found at i:77314586 original size:28 final size:28
Alignment explanation
Indices: 77314546--77314602 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
77314536 TTTAATCAAT
*
77314546 TAACACATTTAAACTAATTGCGATTGAC
1 TAACACATTTAAACTAATAGCGATTGAC
77314574 TAACACATTTAAACTAATAGCGATTGAC
1 TAACACATTTAAACTAATAGCGATTGAC
77314602 T
1 T
77314603 TATCAACTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.32
Consensus pattern (28 bp):
TAACACATTTAAACTAATAGCGATTGAC
Found at i:77316196 original size:21 final size:21
Alignment explanation
Indices: 77316170--77316219 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
77316160 TGCTTTCTTA
*
77316170 TTTTCTTCTTTTATTACTTCT
1 TTTTCTCCTTTTATTACTTCT
*
77316191 TTTTCTCCTTTTATTATTTCT
1 TTTTCTCCTTTTATTACTTCT
77316212 TTTTCTCC
1 TTTTCTCC
77316220 ATAGAAGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.08, C:0.22, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTCTCCTTTTATTACTTCT
Found at i:77317969 original size:17 final size:18
Alignment explanation
Indices: 77317947--77317983 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
77317937 CAATTTAGGC
77317947 CATGTGGGCC-ACACAGG
1 CATGTGGGCCTACACAGG
*
77317964 CATGTGGGCCTACACGGG
1 CATGTGGGCCTACACAGG
77317982 CA
1 CA
77317984 AACATCATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.22, C:0.30, G:0.35, T:0.14
Consensus pattern (18 bp):
CATGTGGGCCTACACAGG
Found at i:77325773 original size:20 final size:20
Alignment explanation
Indices: 77325741--77325778 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
77325731 CTGTTGTTTG
*
77325741 TAAATTTTCATAT-TTTCCC
1 TAAAATTTCATATGTTTCCC
77325760 TAAAATTTCTATATGTTTC
1 TAAAATTTC-ATATGTTTC
77325779 TGATTTCGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 8 0.50
20 4 0.25
21 4 0.25
ACGTcount: A:0.29, C:0.16, G:0.03, T:0.53
Consensus pattern (20 bp):
TAAAATTTCATATGTTTCCC
Found at i:77329511 original size:20 final size:19
Alignment explanation
Indices: 77329459--77329511 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
77329449 TTGGAGCAGG
*
77329459 AATATCGATACCTTAGGAA
1 AATATCGATACCTTAAGAA
*
77329478 AATATTTTGATACCTTAAGAA
1 AATA--TCGATACCTTAAGAA
77329499 AAGTATCGATACC
1 AA-TATCGATACC
77329512 AAATAGATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 4 0.14
20 7 0.25
21 15 0.54
22 2 0.07
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.30
Consensus pattern (19 bp):
AATATCGATACCTTAAGAA
Found at i:77330017 original size:27 final size:27
Alignment explanation
Indices: 77329933--77330027 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
77329923 TGGCTAAATT
* *
77329933 TGAAGGAATAGTACATATGAAAAACTC
1 TGAAAGAATAGTACATATGGAAAACTC
* * *
77329960 TAAAAGAATAGTACGTATGGAAAACAC
1 TGAAAGAATAGTACATATGGAAAACTC
** *
77329987 TGAAAGAATAGTACATATGGCGAACTT
1 TGAAAGAATAGTACATATGGAAAACTC
*
77330014 TGAAGGAATAGTAC
1 TGAAAGAATAGTAC
77330028 GTATAATGAA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.22
Consensus pattern (27 bp):
TGAAAGAATAGTACATATGGAAAACTC
Found at i:77333130 original size:27 final size:27
Alignment explanation
Indices: 77333106--77333179 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
77333096 GGAAAAATAA
*
77333106 AAGCCTTTGTGGCAGTCTATAAAATGG
1 AAGCCTTTGTGGCAATCTATAAAATGG
* * *
77333133 AAGACTATGTGGCAATCTATGAAATGG
1 AAGCCTTTGTGGCAATCTATAAAATGG
* *
77333160 AAGCCCTTGTGGCGATCTAT
1 AAGCCTTTGTGGCAATCTAT
77333180 GGAAAGAAAC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (27 bp):
AAGCCTTTGTGGCAATCTATAAAATGG
Found at i:77333340 original size:27 final size:27
Alignment explanation
Indices: 77333310--77333425 Score: 106
Period size: 27 Copynumber: 4.3 Consensus size: 27
77333300 ATGATATGTG
* *
77333310 TGGATAACTTTGAAGGAATAGTACATA
1 TGGAGAACTTTGAAAGAATAGTACATA
* * * *
77333337 TGGAAAATTTTGAAAGAATAGTGCGTA
1 TGGAGAACTTTGAAAGAATAGTACATA
* *
77333364 TGGAGAACATTGAAAAAATAGTACATA
1 TGGAGAACTTTGAAAGAATAGTACATA
* * * * *
77333391 TGGCGAACTCTGAAGGAATGGTACGTA
1 TGGAGAACTTTGAAAGAATAGTACATA
*
77333418 TGGTGAAC
1 TGGAGAAC
77333426 ACTGAGAGAA
Statistics
Matches: 70, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (27 bp):
TGGAGAACTTTGAAAGAATAGTACATA
Found at i:77334614 original size:32 final size:34
Alignment explanation
Indices: 77334558--77334623 Score: 102
Period size: 32 Copynumber: 2.0 Consensus size: 34
77334548 TTTCTGAAAC
77334558 CCTAAGCGCCGCCCTTGGTTCAGA-CTGTTGGTCT
1 CCTAAGCGCCGCCCTTGGTTCAGACCT-TTGGTCT
77334592 CCTAAGCGCCG-CC-TGGTTCAGACCTTTGGTCT
1 CCTAAGCGCCGCCCTTGGTTCAGACCTTTGGTCT
77334624 TCTACCGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
32 16 0.52
33 4 0.13
34 11 0.35
ACGTcount: A:0.12, C:0.33, G:0.26, T:0.29
Consensus pattern (34 bp):
CCTAAGCGCCGCCCTTGGTTCAGACCTTTGGTCT
Found at i:77338149 original size:17 final size:18
Alignment explanation
Indices: 77338111--77338152 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
77338101 GCAAAAACAA
*
77338111 AAAAAAATAAAAAAAGAG
1 AAAAAAATAAAAAAAGAC
*
77338129 AAAAAAAT-AAAAAATAC
1 AAAAAAATAAAAAAAGAC
77338146 AAAAAAA
1 AAAAAAA
77338153 CTCTACTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.86, C:0.02, G:0.05, T:0.07
Consensus pattern (18 bp):
AAAAAAATAAAAAAAGAC
Found at i:77338150 original size:18 final size:17
Alignment explanation
Indices: 77338103--77338152 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
77338093 CAGTAGAGGC
77338103 AAAAACAAAAAAAAATAA
1 AAAAAC-AAAAAAAATAA
*
77338121 AAAAAGAGAAAAAAATAA
1 AAAAACA-AAAAAAATAA
77338139 AAAATACAAAAAAA
1 AAAA-ACAAAAAAA
77338153 CTCTACTGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 1 0.04
18 25 0.89
19 2 0.07
ACGTcount: A:0.86, C:0.04, G:0.04, T:0.06
Consensus pattern (17 bp):
AAAAACAAAAAAAATAA
Found at i:77338604 original size:7 final size:7
Alignment explanation
Indices: 77338594--77338626 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
77338584 AAAAAACAAA
77338594 AAAAATG
1 AAAAATG
77338601 AAAAATG
1 AAAAATG
77338608 AAAAATG
1 AAAAATG
*
77338615 AAAAAAG
1 AAAAATG
77338622 AAAAA
1 AAAAA
77338627 GGAGAGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (7 bp):
AAAAATG
Found at i:77339061 original size:98 final size:100
Alignment explanation
Indices: 77338954--77339247 Score: 343
Period size: 98 Copynumber: 2.9 Consensus size: 100
77338944 TTCTCATTTC
* *
77338954 GTATCTTAGCAAAATTTTCTATCTTGATTAATTTATTCATTTTGAGCTTTGTTCTCAATAAAATT
1 GTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATT
77339019 TTCATCTTATCCATTGTGATAATCTTTTTCA-TCT
66 TTCATCTTATCCATTGTGATAATCTTTTTCAGTCT
77339053 -TATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAG-TCTTGTTCTCAATAAAAT
1 GTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCT-TTGTTCTCAATAAAAT
* * * *
77339116 CTTATCCATTGTGATAATCC-TT-TG--CATCTTATTCAGTTT
65 -TT-T-CA-TCT--T-ATCCATTGTGATAATCTTTTTCAGTCT
* * * *
77339155 GTATCTTAGCAAAAGTTGCCATCTTGATTAATTTATTCATTGCGAGCTTCGTTCTCAATAAAA-T
1 GTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATT
* * *
77339219 TTCATCTTGTCTATTGTAATAATCTTTTT
66 TTCATCTTATCCATTGTGATAATCTTTTT
77339248 AAAGCAATTT
Statistics
Matches: 164, Mismatches: 16, Indels: 30
0.78 0.08 0.14
Matches are distributed among these distances:
95 2 0.01
96 3 0.02
97 2 0.01
98 61 0.37
99 11 0.07
100 2 0.01
101 13 0.08
102 4 0.02
103 58 0.35
104 4 0.02
105 4 0.02
ACGTcount: A:0.27, C:0.16, G:0.10, T:0.48
Consensus pattern (100 bp):
GTATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGTTCTCAATAAAATT
TTCATCTTATCCATTGTGATAATCTTTTTCAGTCT
Found at i:77339115 original size:49 final size:49
Alignment explanation
Indices: 77338964--77339115 Score: 127
Period size: 49 Copynumber: 3.1 Consensus size: 49
77338954 GTATCTTAGC
*
77338964 AAAATTTTCTATCTTGATTAATTTATTCATTTTGAG-CTTTGTTCTCAAT
1 AAAATTTTCTATCTTGATTAATTTATTCATTTCGAGTC-TTGTTCTCAAT
** * * * **
77339013 AAAATTTTC-ATCTT-ATCCATTGTGATAATCTTTTTC-A-TCTT-ATCTTAGC
1 AAAATTTTCTATCTTGATTAATT-T-AT--TC-ATTTCGAGTCTTGTTCTCAAT
*
77339062 AAAATTTGCTATCTTGATTAATTTATTCATTTCGAGTCTTGTTCTCAAT
1 AAAATTTTCTATCTTGATTAATTTATTCATTTCGAGTCTTGTTCTCAAT
77339111 AAAAT
1 AAAAT
77339116 CTTATCCATT
Statistics
Matches: 76, Mismatches: 16, Indels: 22
0.67 0.14 0.19
Matches are distributed among these distances:
46 4 0.05
47 8 0.11
48 10 0.13
49 34 0.45
50 8 0.11
51 9 0.12
52 3 0.04
ACGTcount: A:0.28, C:0.14, G:0.08, T:0.49
Consensus pattern (49 bp):
AAAATTTTCTATCTTGATTAATTTATTCATTTCGAGTCTTGTTCTCAAT
Found at i:77340170 original size:46 final size:46
Alignment explanation
Indices: 77340118--77340256 Score: 208
Period size: 46 Copynumber: 3.0 Consensus size: 46
77340108 AATGGACTAA
*
77340118 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAG-AGGAGTTGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCA-GAGTAGATCG
* * * *
77340164 AAGATAGTAGATTTTGTCTTCCTATATTTGGCAGCAGAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCG
*
77340210 AAGATAGCAGATCTTATCTTCCTGTATTTGGCAGCAGAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCG
77340256 A
1 A
77340257 CAGCGGAGTA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 81 0.99
47 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (46 bp):
AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCG
Found at i:77340265 original size:16 final size:16
Alignment explanation
Indices: 77340241--77340272 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
77340231 CTGTATTTGG
77340241 CAGCAGAGTAGATCGA
1 CAGCAGAGTAGATCGA
*
77340257 CAGCGGAGTAGATCGA
1 CAGCAGAGTAGATCGA
77340273 AGATAGCAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (16 bp):
CAGCAGAGTAGATCGA
Found at i:77340297 original size:62 final size:62
Alignment explanation
Indices: 77340195--77340318 Score: 196
Period size: 62 Copynumber: 2.0 Consensus size: 62
77340185 CTATATTTGG
*
77340195 CAGCAGAGTAGATCAAAGATAGCAGATCTTATCTTCCTGTATTTGGCAGCAG-AGTAGATCGA
1 CAGCAGAGTAGATCAAAGATAGCAGATCTTATCTTCCTGTATTTGGCA-AAGAAGTAGATCGA
* * *
77340257 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAAAGAAGTAGATCGA
1 CAGCAGAGTAGATCAAAGATAGCAGATCTTATCTTCCTGTATTTGGCAAAGAAGTAGATCGA
77340319 AGATAGCAGA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
61 2 0.04
62 55 0.96
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (62 bp):
CAGCAGAGTAGATCAAAGATAGCAGATCTTATCTTCCTGTATTTGGCAAAGAAGTAGATCGA
Found at i:77340316 original size:46 final size:46
Alignment explanation
Indices: 77340257--77341453 Score: 1789
Period size: 46 Copynumber: 26.1 Consensus size: 46
77340247 AGTAGATCGA
77340257 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
** * *
77340303 CAAAGAAGTAGATCGAAGATAGCAGATCTTGTCTTCTTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * *
77340349 CAGAGGAGTAGATTGAAGATAGCAGATCTTGTCTTCATGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* *
77340395 CAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * *
77340441 CAGCGGAATAGATTGAAAATAGCAGATCTTGTCTTCC--------G
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
*
77340479 CAGAGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * * *
77340525 CAGTGGAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTTGT
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
77340571 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * * *
77340617 CAGTGGAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTTGT
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * *
77340663 CAGCAGAGTAGATCGAAGATAGCAGATCTTGTTTTCATGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
*
77340709 CAGCGGAGTAGATCGAAAATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * * *
77340755 CAGTGGAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTTGT
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
*
77340801 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGA
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * *
77340847 CAGCGGAGTAGATTGATCAAAGATAGCAGATCTTGTCTTCTTGTATTTGT
1 CAGCGGAGT--A--GATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
77340897 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * * *
77340943 CAGTGGAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTTGT
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
77340989 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * * *
77341035 CAGTGGAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTTGT
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
77341081 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * * *
77341127 CAGTGGAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTTGT
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
77341173 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* *
77341219 CAGTGGAGTAGATCGAAGATAACAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
*
77341265 CAGAGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * * *
77341311 CAGTGGAGTAGATCAAAGATAGCAGATCTTGTCTTCTTGTATTTGT
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
77341357 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
* * * **
77341403 CAGTGGAGTAGATTGAAGACAGCAGATCTTGTCTTTTTGTATTTGG
1 CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
77341449 CAGCG
1 CAGCG
77341454 AAGTCGATTG
Statistics
Matches: 1039, Mismatches: 100, Indels: 24
0.89 0.09 0.02
Matches are distributed among these distances:
38 34 0.03
46 961 0.92
48 2 0.00
50 42 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (46 bp):
CAGCGGAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGG
Found at i:77343500 original size:19 final size:19
Alignment explanation
Indices: 77343478--77343531 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
77343468 GCATATGTAC
77343478 ATATTATATATATATTT-AT
1 ATATTATATATAT-TTTAAT
* *
77343497 ATATTCTTTATATTTTAAAAT
1 ATATTATATATATTTT--AAT
77343518 ATATTATATATATT
1 ATATTATATATATT
77343532 ATATATACTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 3 0.11
19 11 0.39
21 14 0.50
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTATATATATTTTAAT
Found at i:77343545 original size:9 final size:9
Alignment explanation
Indices: 77343478--77343538 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
77343468 GCATATGTAC
77343478 ATATTATAT
1 ATATTATAT
*
77343487 ATATATTTAT
1 ATAT-TATAT
*
77343497 ATATTCTTTAT
1 ATA-T-TATAT
* *
77343508 ATTTTAAAAT
1 ATATT-ATAT
77343518 ATATTATAT
1 ATATTATAT
77343527 ATATTATAT
1 ATATTATAT
77343536 ATA
1 ATA
77343539 CTTTATAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
9 20 0.48
10 14 0.33
11 8 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATTATAT
Found at i:77343715 original size:18 final size:18
Alignment explanation
Indices: 77343668--77343711 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
77343658 CTTAAAGTAC
* *
77343668 TTTAATTTTATTTGTTTA
1 TTTACTTTTATTTGTTGA
77343686 TTTACTTTTATTTGTTGA
1 TTTACTTTTATTTGTTGA
77343704 TTT-CTTTT
1 TTTACTTTT
77343712 TATTATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 5 0.21
18 19 0.79
ACGTcount: A:0.16, C:0.05, G:0.07, T:0.73
Consensus pattern (18 bp):
TTTACTTTTATTTGTTGA
Found at i:77345147 original size:51 final size:51
Alignment explanation
Indices: 77345068--77345465 Score: 478
Period size: 51 Copynumber: 7.8 Consensus size: 51
77345058 AGTTACTAGA
77345068 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
* * * * * *** *
77345119 TAATGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT-AGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT-GG
77345170 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
* * * * * *** *
77345221 TAATGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT-AGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT-GG
77345272 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
* * * * * *** *
77345323 TAATGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT-AGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT-GG
77345374 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
* * *
77345425 TCACATGTGTAGTACTATGTGCAGGCTACTATGTGAATCGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG
77345466 GTATCATTTA
Statistics
Matches: 284, Mismatches: 57, Indels: 12
0.80 0.16 0.03
Matches are distributed among these distances:
50 6 0.02
51 272 0.96
52 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGG
Found at i:77345242 original size:102 final size:102
Alignment explanation
Indices: 77345066--77345457 Score: 757
Period size: 102 Copynumber: 3.8 Consensus size: 102
77345056 GAAGTTACTA
77345066 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTAATGTGTGTAG
1 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTAATGTGTGTAG
77345131 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
66 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
77345168 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTAATGTGTGTAG
1 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTAATGTGTGTAG
77345233 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
66 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
77345270 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTAATGTGTGTAG
1 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTAATGTGTGTAG
77345335 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
66 TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
* **
77345372 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTCACATGTGTAG
1 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTAATGTGTGTAG
77345437 TACTATGTGCAGGCTACTATG
66 TACTATGTGCAGGCTACTATG
77345458 TGAATCGGGT
Statistics
Matches: 287, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 287 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (102 bp):
GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATGGTAATGTGTGTAG
TACTATGTGCAGGCTACTATGCGTACCGGATAGCTTC
Found at i:77345459 original size:26 final size:26
Alignment explanation
Indices: 77345379--77345459 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
77345369 TTCGATCACG
77345379 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * ***
77345405 CGTGTA-T-CGGATGAAAATGG-TCAC-A
1 TGTGTAGTAC-TATGTGCA-GGCT-ACTA
77345430 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
77345456 TGTG
1 TGTG
77345460 AATCGGGTAT
Statistics
Matches: 38, Mismatches: 10, Indels: 14
0.61 0.16 0.23
Matches are distributed among these distances:
24 1 0.03
25 16 0.42
26 20 0.53
27 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:77348890 original size:12 final size:12
Alignment explanation
Indices: 77348873--77348910 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
77348863 GAAATTAAGC
77348873 TTTTAGTGGCAG
1 TTTTAGTGGCAG
77348885 TTTTAGTGGCAG
1 TTTTAGTGGCAG
77348897 TTTTAGTGGC-G
1 TTTTAGTGGCAG
77348908 TTT
1 TTT
77348911 GAATTGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.15
12 22 0.85
ACGTcount: A:0.13, C:0.08, G:0.32, T:0.47
Consensus pattern (12 bp):
TTTTAGTGGCAG
Found at i:77349038 original size:39 final size:40
Alignment explanation
Indices: 77348963--77349040 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 40
77348953 TGAGAAAAAC
* *
77348963 GCCGCAAAAGGTAAAGCAATAGCGGCTTTTTCTCATAAAT
1 GCCGCAAAAGGTAAACCAATAGCAGCTTTTTCTCATAAAT
*
77349003 GCCGCAAGAGGT-AACCAATAGCAGCGTTTTT-TCATAAA
1 GCCGCAAAAGGTAAACCAATAGCAGC-TTTTTCTCATAAA
77349041 CGCCACGAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 18 0.53
40 16 0.47
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (40 bp):
GCCGCAAAAGGTAAACCAATAGCAGCTTTTTCTCATAAAT
Found at i:77349282 original size:25 final size:25
Alignment explanation
Indices: 77349249--77349311 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
77349239 CCCCAACGTT
* *
77349249 TGCTGCATCGCCGTCGACAGTCCTC
1 TGCTGCATCACCGTCAACAGTCCTC
77349274 TGCTGCATCACCGTCAACAGTCCTC
1 TGCTGCATCACCGTCAACAGTCCTC
*
77349299 CGCTG-ATCACCGT
1 TGCTGCATCACCGT
77349312 GTAAGTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
24 8 0.23
25 27 0.77
ACGTcount: A:0.16, C:0.40, G:0.21, T:0.24
Consensus pattern (25 bp):
TGCTGCATCACCGTCAACAGTCCTC
Found at i:77353090 original size:114 final size:114
Alignment explanation
Indices: 77352933--77353402 Score: 692
Period size: 114 Copynumber: 4.1 Consensus size: 114
77352923 GTTTTTATTA
* * * *
77352933 TAAAA-GCCGTAAAATGAAGCAATAGCGGTGTTTGGACCAAAAACGCCGCAAATATGTATTAAAA
1 TAAAACGCCGCAAAAGGAAGCAATAGCGGCGTTTGGACCAAAAACGCCGCGAATATGTATTAAAA
** * * *
77352997 TTTTGCAAAACGGCGCCATTTTTAGCAGC-TCTTTTAGTGGCGTTTGGGC
66 TTTTGCAAAACAACGCCATTTTTAGCAGCAT-TTTTAGTAGCATTTAGGC
*
77353046 TAAAACGCCGCAAAAGGAAGCAATAGCGGCGTTTAGACCAAAAACGCCGCGAATATGTATTAAAA
1 TAAAACGCCGCAAAAGGAAGCAATAGCGGCGTTTGGACCAAAAACGCCGCGAATATGTATTAAAA
77353111 TTTTGCAAAACAACGCCATTTTTAGCAGCATTTTTAGTAGCATTTAGGC
66 TTTTGCAAAACAACGCCATTTTTAGCAGCATTTTTAGTAGCATTTAGGC
* *
77353160 TAAAACACCGCAAAAGGAAGCAATTGCGGCGTTTGGACCAAAAACGCCGCGAATATGTATTAAAA
1 TAAAACGCCGCAAAAGGAAGCAATAGCGGCGTTTGGACCAAAAACGCCGCGAATATGTATTAAAA
77353225 TTTTGCAAAACAACGCCATTTTTAGCAGCATTTTTAGTAGCATTTAGGC
66 TTTTGCAAAACAACGCCATTTTTAGCAGCATTTTTAGTAGCATTTAGGC
* *
77353274 TAAAACACCGCAAAAGGAAGCAATTGCGGCGTTTGGACCAAAAACGCCGCGAATATGTATTAAAA
1 TAAAACGCCGCAAAAGGAAGCAATAGCGGCGTTTGGACCAAAAACGCCGCGAATATGTATTAAAA
** * ** * * * *
77353339 TTTTGCAAAACGGCACTGTTTTTAGTAGCATTTTTAGTGGCGTTTGGGC
66 TTTTGCAAAACAACGCCATTTTTAGCAGCATTTTTAGTAGCATTTAGGC
* *
77353388 TAAAATGCTGCAAAA
1 TAAAACGCCGCAAAA
77353403 TATTCTATTC
Statistics
Matches: 330, Mismatches: 25, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
113 5 0.02
114 324 0.98
115 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (114 bp):
TAAAACGCCGCAAAAGGAAGCAATAGCGGCGTTTGGACCAAAAACGCCGCGAATATGTATTAAAA
TTTTGCAAAACAACGCCATTTTTAGCAGCATTTTTAGTAGCATTTAGGC
Found at i:77359547 original size:21 final size:21
Alignment explanation
Indices: 77359522--77359565 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
77359512 ATCTTCGAGG
77359522 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
77359543 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
77359564 AT
1 AT
77359566 GTAATCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:77359571 original size:19 final size:19
Alignment explanation
Indices: 77359521--77359576 Score: 85
Period size: 21 Copynumber: 2.8 Consensus size: 19
77359511 AATCTTCGAG
77359521 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77359540 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
77359561 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
77359577 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:77359583 original size:22 final size:23
Alignment explanation
Indices: 77359555--77359599 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
77359545 ATGCAATCTT
*
77359555 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATATTAGA
*
77359577 AGATATGATTTTGTAATATTAGA
1 AGATATGATTATGTAATATTAGA
77359600 GATTTAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.40, C:0.02, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATATTAGA
Found at i:77359609 original size:22 final size:23
Alignment explanation
Indices: 77359565--77359609 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77359555 AGATATGATA
* *
77359565 TGTAATCTTAGAAGATATGATTT
1 TGTAATATTAGAAGATATAATTT
*
77359588 TGTAATATTAG-AGATTTAATTT
1 TGTAATATTAGAAGATATAATTT
77359610 GTAGATACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATATTAGAAGATATAATTT
Found at i:77359797 original size:19 final size:21
Alignment explanation
Indices: 77359773--77359811 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
77359763 GCTTACTGTT
*
77359773 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
77359792 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
77359812 TTAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:77360041 original size:3 final size:3
Alignment explanation
Indices: 77360033--77360075 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
77360023 ATTAATTTTG
77360033 TTA TTA TTA TTA TTA TTA TTA -TA TTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
77360076 ACCTACATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.05
3 33 0.87
4 3 0.08
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:77366492 original size:16 final size:16
Alignment explanation
Indices: 77366470--77366502 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
77366460 AATCATTCTC
77366470 AAAAAAATAAAATAAAT
1 AAAAAAAT-AAATAAAT
77366487 AAAAAAATAAATAAAT
1 AAAAAAATAAATAAAT
77366503 TACGCATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAAAATAAATAAAT
Found at i:77366778 original size:88 final size:88
Alignment explanation
Indices: 77366633--77367121 Score: 620
Period size: 88 Copynumber: 5.6 Consensus size: 88
77366623 GTGAAGATAA
* * * * * * * *
77366633 CAGATATTGCCTTCCTGTACTGGCAGCGAAGCAGATCGAAGTCAGCAACCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
* *
77366698 GCAGCGGAGTAGGCTAAAAATAA
66 GCAGCGGAGCAGGCTAAAAATAG
* *
77366721 CAGATCTTGCCTTCCTGCACCGACAGCGAAACAGATCAAAGACACCAGCCTTGCCTCCTTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
* * *
77366786 ACAGTGTAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * * * *
77366809 CAGATCTTACCTTCCTGCACCGACAACAAAGCAGATCGAAGTCACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
* *
77366874 ACAGTGGAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * * * *
77366897 CAGATCTTGCCTTCTTGCACGGATAGCGAAGCAGATCGAAGACATCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
* * * *
77366962 GTAGCGAAGTAGGCTGAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* *
77366985 CAGATCTTGCCTTTCTGCACCGACAACGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
*
77367050 GCAGCGGAGCAGG-TTAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * * * *
77367072 CAGATCTTGCCTTCCTACACCGAAAGCGAAGCAGATTAATGACCCCAGCC
1 CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCC
77367122 CTATCTTCCT
Statistics
Matches: 346, Mismatches: 55, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
87 51 0.15
88 295 0.85
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCAAAGACACCAGCCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGCTAAAAATAG
Found at i:77367170 original size:44 final size:44
Alignment explanation
Indices: 77367121--77367496 Score: 455
Period size: 44 Copynumber: 8.7 Consensus size: 44
77367111 TGACCCCAGC
*
77367121 CCTATCTTCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* *
77367165 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTTTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* *
77367209 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* * *
77367253 TCTATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A----GAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
*
77367291 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
* *
77367335 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAA-ATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTT-AAAGATTGTGAAT
* * * * * *
77367379 TCTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTGT-AGGT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGA-AT
* * * * *
77367423 CTTATCTCCCTGGTCAGCAGTGTAATAGGTTGAAGATCGTGAAC
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
*
77367467 CCTATCTCCCTGAG-CAGCAGTGGAGTAGGT
1 CCTATCTCCCTG-GTCAGCAGTGGAATAGGT
77367497 GGAAAATAGC
Statistics
Matches: 287, Mismatches: 34, Indels: 22
0.84 0.10 0.06
Matches are distributed among these distances:
38 32 0.11
39 2 0.01
40 1 0.00
42 1 0.00
43 5 0.02
44 241 0.84
45 5 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
Found at i:77367328 original size:170 final size:170
Alignment explanation
Indices: 77367121--77367450 Score: 495
Period size: 170 Copynumber: 1.9 Consensus size: 170
77367111 TGACCCCAGC
* *
77367121 CCTATCTTCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGT
** * *
77367186 GGAATAGGTT-AAAGATTTTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTG-A
66 GGAATAGGTTGAAA-ATTGAGAATCCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTA
*
77367249 GAAT-TCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAAT
130 G-GTCT-TATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAAT
* *
77367291 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGTAGT
1 CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGT
* *
77367356 GGAATAGGTTGAAAATTGAGAATTCTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTGTAG
66 GGAATAGGTTGAAAATTGAGAATCCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAG
* *
77367421 GTCTTATCTCCCTGGTCAGCAGTGTAATAG
131 GTCTTATCTCCCTGGGCAGCAGTGGAATAG
77367451 GTTGAAGATC
Statistics
Matches: 144, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
170 138 0.96
171 6 0.04
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (170 bp):
CCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGT
GGAATAGGTTGAAAATTGAGAATCCTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATTGTAG
GTCTTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGAAT
Found at i:77367357 original size:126 final size:129
Alignment explanation
Indices: 77367122--77367503 Score: 520
Period size: 126 Copynumber: 2.9 Consensus size: 129
77367112 GACCCCAGCC
* * * *
77367122 CTATCTTCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGACAGCAGTG
1 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGA---TGAATCCTATCTCCCTGGACAGCAGTG
* *
77367187 GAATAGGTTAAAGATTTTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGAGAA
63 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGAGAA
77367252 TT
128 TT
77367254 CTATCTCCCTGGGCAGCAGTGGAATAGATT-AA-A-GAATCCTATCTCCCTGGACAGCAGTGGAA
1 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATGAATCCTATCTCCCTGGACAGCAGTGGAA
*
77367316 TAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAAATTGAGAATT
66 TAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGAGAATT
* * * *
77367380 CTATCTCCCTGGGCAGTAGTGGAATAGATTGAAGATTGTAGGTCTTATCTCCCTGGTCAGCAGTG
1 CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGA-TG-A-ATCCTATCTCCCTGGACAGCAGTG
* * * * * *
77367445 TAATAGGTTGAAGATCGTGAACCCTATCTCCCTGAG-CAGCAGTGGAGTAGGTGGAAAAT
63 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAAAT
77367504 AGCAGATCTT
Statistics
Matches: 226, Mismatches: 17, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
126 119 0.53
127 2 0.01
128 1 0.00
130 2 0.01
131 3 0.01
132 98 0.43
133 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.29
Consensus pattern (129 bp):
CTATCTCCCTGGGCAGCAGTGGAATAGATTGAAGATGAATCCTATCTCCCTGGACAGCAGTGGAA
TAGGTTAAAGATTGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGAGAATT
Found at i:77368362 original size:19 final size:19
Alignment explanation
Indices: 77368338--77368412 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
77368328 AATCTTCGAG
77368338 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77368357 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77368376 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
77368397 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
77368413 AGATNNNNNN
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:77368384 original size:21 final size:21
Alignment explanation
Indices: 77368339--77368401 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
77368329 ATCTTCGAGG
77368339 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
77368358 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
77368379 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
77368400 AT
1 AT
77368402 GTAATCTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.45
21 23 0.55
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:77371592 original size:8 final size:9
Alignment explanation
Indices: 77371564--77371601 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
77371554 TCAGGCTTAA
77371564 TCATATCAG
1 TCATATCAG
77371573 TCATATCAG
1 TCATATCAG
77371582 TCATA-CAG
1 TCATATCAG
*
77371590 TCATTTCAG
1 TCATATCAG
77371599 TCA
1 TCA
77371602 ACTAGGGGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (9 bp):
TCATATCAG
Found at i:77371592 original size:17 final size:18
Alignment explanation
Indices: 77371564--77371601 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
77371554 TCAGGCTTAA
77371564 TCATATCAGTCATATCAG
1 TCATATCAGTCATATCAG
*
77371582 TCATA-CAGTCATTTCAG
1 TCATATCAGTCATATCAG
77371599 TCA
1 TCA
77371602 ACTAGGGGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (18 bp):
TCATATCAGTCATATCAG
Found at i:77377663 original size:15 final size:15
Alignment explanation
Indices: 77377643--77377671 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
77377633 TTATTTAATT
77377643 ATTAAATTTTTTGAA
1 ATTAAATTTTTTGAA
77377658 ATTAAATTTTTTGA
1 ATTAAATTTTTTGA
77377672 TATTTTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (15 bp):
ATTAAATTTTTTGAA
Found at i:77381368 original size:17 final size:17
Alignment explanation
Indices: 77381346--77381393 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
77381336 TTGATTACCC
*
77381346 AATTAAATTAATTCTAT
1 AATTAATTTAATTCTAT
*
77381363 AATTAATTTAATTCTGT
1 AATTAATTTAATTCTAT
77381380 AATTAATTTAATTC
1 AATTAATTTAATTC
77381394 ATGTGACAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (17 bp):
AATTAATTTAATTCTAT
Found at i:77385910 original size:20 final size:20
Alignment explanation
Indices: 77385866--77385908 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
77385856 AAAATAAAAG
77385866 TTTTAAAATATCTTTTTAGA
1 TTTTAAAATATCTTTTTAGA
* *
77385886 ATTTAAAATATTTTTTTA-A
1 TTTTAAAATATCTTTTTAGA
77385905 TTTT
1 TTTT
77385909 TAGAATTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTAAAATATCTTTTTAGA
Found at i:77385981 original size:60 final size:60
Alignment explanation
Indices: 77385903--77386018 Score: 164
Period size: 60 Copynumber: 1.9 Consensus size: 60
77385893 ATATTTTTTT
* *
77385903 AATTTTTAGAATTAGAACT-AAATTGAAAATTGTTGTAAATATTCAGGGCTAAATTTATTA
1 AATTTTTAGAATTAGAACTAAAATGGAAAATT-TTGTAAACATTCAGGGCTAAATTTATTA
* *
77385963 AATTTTTAGAAGTT-GAACTAAAATGGCAAATTTTGTAAACATTGAGGGCTAAATTT
1 AATTTTTAGAA-TTAGAACTAAAATGGAAAATTTTGTAAACATTCAGGGCTAAATTT
77386019 GTCGATTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
60 38 0.76
61 12 0.24
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (60 bp):
AATTTTTAGAATTAGAACTAAAATGGAAAATTTTGTAAACATTCAGGGCTAAATTTATTA
Found at i:77386508 original size:20 final size:19
Alignment explanation
Indices: 77386476--77386533 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
77386466 TTTGAATGTG
77386476 AAATAATATTTATATTTTCTT
1 AAATAA-ATTTATATTTT-TT
**
77386497 TTATAAATTTATATATTTTT
1 AAATAAATTTATAT-TTTTT
*
77386517 AAATAATTTTATATTTT
1 AAATAAATTTATATTTT
77386534 ATATATTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 3 0.10
20 21 0.68
21 7 0.23
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
AAATAAATTTATATTTTTT
Found at i:77395526 original size:107 final size:107
Alignment explanation
Indices: 77395292--77395803 Score: 825
Period size: 107 Copynumber: 4.8 Consensus size: 107
77395282 AAGCTAAGAA
* * * * * * * *
77395292 GATATTTGGCTATTTGGTCAAAC--GCAATTGAGACCCAGCACGTTAGGGCACATTCTCTCAAAT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
* * **
77395355 TTCCAAACGC-AAATATTGCCTAACTTCGAAAGTTT-AAAAG
66 TTCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAG
* * * * * *
77395395 GATATTTGGCTATTTGGTCAAACGAGAAGTCGAAACCCAACAGGTTAGGGTACGTTTCCTCGATT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
*
77395460 TTCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAT
66 TTCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAG
77395502 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
77395567 TTCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAG
66 TTCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAG
77395609 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
77395674 TTCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAG
66 TTCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAG
77395716 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
1 GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
77395781 TTCCAAACGCGAAATATTGCCTT
66 TTCCAAACGCGAAATATTGCCTT
77395804 GTTTAGAAAA
Statistics
Matches: 381, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
103 23 0.06
105 38 0.10
106 21 0.06
107 299 0.78
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Consensus pattern (107 bp):
GATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTTTCTCGATT
TTCCAAACGCGAAATATTGCCTTATTTTAAAAGTTTAAAAAG
Found at i:77398538 original size:44 final size:45
Alignment explanation
Indices: 77398430--77399011 Score: 518
Period size: 44 Copynumber: 13.3 Consensus size: 45
77398420 NCCAACACAT
* * * * *
77398430 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* *
77398475 GAAGACAAGATCTGC-ATCTTTGATCCACTTC-CTACCAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * * * *
77398518 GAAGATAGGA-CTTGCTATCTTCGATCTACTTCAC-GCCAATACAT
1 GAAGACAAGATC-TGCTATCTTCGATCTACTTCACTACCAATATAG
* *
77398562 GAAGACAAGATCTGC-ATCTTCGATCCAC-TCCCTACCAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * * * * * *
77398605 GAAGATAGGACCTACTATCTTCGATCTACTTCACT-CCAACACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * * *
77398649 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * *
77398694 GAAGACAAGATCTG-TATCTTTGATCCACTTC-CTACCAATATTG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * * * *
77398737 GAAGACAGGACCTGCTATCTTCGATCTACTTCAC-GCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * *
77398781 GAAGACAAGA--TGC-ATCTCCGATCCAC-TCCCTACCAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * * * * *
77398822 GAAGATAGGATCTACTATCTTCGATCTACTTCAC-ACCAACACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * * * * *
77398866 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACTAGTATGG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* *
77398911 GAAGACAAGATCTGC-ATCTTTGATCCACTTC-CTACCAATATAG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
* * * * *
77398954 GAAGACAGGA-CATGCTATCTTCGATCTACTTCAC-GCGAATACAT
1 GAAGACAAGATC-TGCTATCTTCGATCTACTTCACTACCAATATAG
77398998 GAAGACAAGATCTG
1 GAAGACAAGATCTG
77399012 TTTTAATGAC
Statistics
Matches: 422, Mismatches: 95, Indels: 41
0.76 0.17 0.07
Matches are distributed among these distances:
40 3 0.01
41 26 0.06
42 8 0.02
43 94 0.22
44 226 0.54
45 65 0.15
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (45 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAG
Found at i:77398840 original size:85 final size:85
Alignment explanation
Indices: 77398715--77398876 Score: 261
Period size: 85 Copynumber: 1.9 Consensus size: 85
77398705 CTGTATCTTT
* * * * *
77398715 GATCCACTTCCTACCAATATTGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACA
1 GATCCACTCCCTACCAATATAGGAAGACAGGACCTACTATCTTCGATCTACTTCACACCAACACA
77398780 TGAAGACAAGATGCATCTCC
66 TGAAGACAAGATGCATCTCC
* *
77398800 GATCCACTCCCTACCAATATAGGAAGATAGGATCTACTATCTTCGATCTACTTCACACCAACACA
1 GATCCACTCCCTACCAATATAGGAAGACAGGACCTACTATCTTCGATCTACTTCACACCAACACA
77398865 TGAAGACAAGAT
66 TGAAGACAAGAT
77398877 CTGCTTTCTT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 70 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.24
Consensus pattern (85 bp):
GATCCACTCCCTACCAATATAGGAAGACAGGACCTACTATCTTCGATCTACTTCACACCAACACA
TGAAGACAAGATGCATCTCC
Found at i:77398912 original size:217 final size:217
Alignment explanation
Indices: 77398421--77399008 Score: 1059
Period size: 217 Copynumber: 2.7 Consensus size: 217
77398411 NNNNNNNNNN
77398421 CCAACACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
1 CCAACACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
* *
77398486 CTGCATCTTTGATCCACTTCCTACCAATATAGGAAGATAGGACTTGCTATCTTCGATCTACTTCA
66 CTGCATCTTTGATCCACTTCCTACCAATATAGGAAGACAGGACATGCTATCTTCGATCTACTTCA
*
77398551 CGCCAATACATGAAGACAAGATCTGCATCTTCGATCCACTCCCTACCAATATAGGAAGATAGGAC
131 CGCCAATACATGAAGACAAGA--TGCATCTCCGATCCACTCCCTACCAATATAGGAAGATAGGAC
*
77398616 CTACTATCTTCGATCTACTTCACT
194 CTACTATCTTCGATCTACTTCACA
*
77398640 CCAACACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
1 CCAACACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
* * *
77398705 CTGTATCTTTGATCCACTTCCTACCAATATTGGAAGACAGGACCTGCTATCTTCGATCTACTTCA
66 CTGCATCTTTGATCCACTTCCTACCAATATAGGAAGACAGGACATGCTATCTTCGATCTACTTCA
*
77398770 CGCCAATACATGAAGACAAGATGCATCTCCGATCCACTCCCTACCAATATAGGAAGATAGGATCT
131 CGCCAATACATGAAGACAAGATGCATCTCCGATCCACTCCCTACCAATATAGGAAGATAGGACCT
77398835 ACTATCTTCGATCTACTTCACA
196 ACTATCTTCGATCTACTTCACA
*
77398857 CCAACACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACTAGTATGGGAAGACAAGAT
1 CCAACACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
77398922 CTGCATCTTTGATCCACTTCCTACCAATATAGGAAGACAGGACATGCTATCTTCGATCTACTTCA
66 CTGCATCTTTGATCCACTTCCTACCAATATAGGAAGACAGGACATGCTATCTTCGATCTACTTCA
*
77398987 CGCGAATACATGAAGACAAGAT
131 CGCCAATACATGAAGACAAGAT
77399009 CTGTTTTAAT
Statistics
Matches: 355, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
217 209 0.59
219 146 0.41
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (217 bp):
CCAACACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
CTGCATCTTTGATCCACTTCCTACCAATATAGGAAGACAGGACATGCTATCTTCGATCTACTTCA
CGCCAATACATGAAGACAAGATGCATCTCCGATCCACTCCCTACCAATATAGGAAGATAGGACCT
ACTATCTTCGATCTACTTCACA
Done.