Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 253 of 313
Found at i:77674714 original size:34 final size:34
Alignment explanation
Indices: 77674675--77675126 Score: 191
Period size: 34 Copynumber: 13.3 Consensus size: 34
77674665 AAAATTTTAA
*
77674675 TACATAACTTACATAACTTATATAATACATAACT
1 TACATAACTTACATAACTTACATAATACATAACT
* * * * *
77674709 TACATAATTTACTTAA--TACATAAATATATATCA
1 TACATAACTTACATAACTTACAT-AATACATAACT
** *
77674742 TATCATAACTTACATAAC-T-CA-AATTTATCAATCA
1 TA-CATAACTTACATAACTTACATAATACAT-AA-CT
* *
77674776 TATCATAACTTATATATAAACTTACATAACTTAAATAACT
1 TA-CATAAC-T-TACAT-AACTTACATAA--TACATAACT
* *
77674816 TACATAA--TACATAACTTTCATAACTTACATTA--
1 TACATAACTTACATAACTTACATAA--TACATAACT
* *
77674848 TACACAACTTACATAACTTAATCAATATTATACACAACT
1 TACATAACTTACATAACTT-A-C-ATA--ATACATAACT
* *
77674887 TACATAA--TACATTACTTACATAACTTACATTA--
1 TACATAACTTACATAACTTACATAA--TACATAACT
* *
77674919 TACACAACTTACATAACTTA-AT--TACATTA--
1 TACATAACTTACATAACTTACATAATACATAACT
* * *
77674948 TACATGATTTACATAACTTACATAACTTACATAGCT
1 TACATAACTTACATAACTTACATAA--TACATAACT
* *
77674984 TACAT-TC-TACACAACTTACATAACATACATAA--
1 TACATAACTTACATAACTTACAT-A-ATACATAACT
* *
77675016 TACACAACTTACATAGCTTACATAATACATAACT
1 TACATAACTTACATAACTTACATAATACATAACT
* *
77675050 TACATAACTTATATAA--TACATAACTTACATAATT
1 TACATAACTTACATAACTTACATAA--TACATAACT
* * * *
77675084 TACTTAA--TACATAAATATATATCATATCATAACT
1 TACATAACTTACATAACT-TACATAATA-CATAACT
77675118 TACATAACT
1 TACATAACT
77675127 CATTTATACT
Statistics
Matches: 320, Mismatches: 51, Indels: 92
0.69 0.11 0.20
Matches are distributed among these distances:
29 24 0.08
30 2 0.01
32 48 0.15
33 17 0.05
34 159 0.50
35 13 0.04
36 12 0.04
37 20 0.06
38 1 0.00
39 14 0.04
40 5 0.02
41 2 0.01
42 3 0.01
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.35
Consensus pattern (34 bp):
TACATAACTTACATAACTTACATAATACATAACT
Found at i:77674906 original size:25 final size:25
Alignment explanation
Indices: 77674798--77675124 Score: 125
Period size: 25 Copynumber: 13.0 Consensus size: 25
77674788 TATATAAACT
*
77674798 TACATAACTTAAATAACTTACATAA
1 TACATAACTTACATAACTTACATAA
* *
77674823 TACATAACTTTCATAACTTACATTA
1 TACATAACTTACATAACTTACATAA
*
77674848 TACACAACTTACATAACTTAATCAATATTA
1 TACATAACTTACATAACTT-A-C-ATA--A
* *
77674878 TACACAACTTACATAA--TACATTACT
1 TACATAACTTACATAACTTACA-TA-A
* *
77674903 TACATAACTTACATTA--TACACAA
1 TACATAACTTACATAACTTACATAA
*
77674926 CTTACATAAC-T---TAA-TTACATTA
1 --TACATAACTTACATAACTTACATAA
* *
77674948 TACATGATTTACATAACTTACATAA
1 TACATAACTTACATAACTTACATAA
* * *
77674973 CTTACATAGCTTACAT-TC-TACACAA
1 --TACATAACTTACATAACTTACATAA
* *
77674998 CTTACATAACATACATAA--TACACAA
1 --TACATAACTTACATAACTTACATAA
*
77675023 CTTACATAGCTTACATAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
*
77675048 CTTACATAACTTATATAA--TACATAA
1 --TACATAACTTACATAACTTACATAA
* *
77675073 CTTACATAATTTACTTAA--TACATAAA
1 --TACATAACTTACATAACTTACAT-AA
* * *
77675099 TATATATCATATCATAACTTACATAA
1 TACATAACTTA-CATAACTTACATAA
77675125 CTCATTTATA
Statistics
Matches: 242, Mismatches: 39, Indels: 41
0.75 0.12 0.13
Matches are distributed among these distances:
20 6 0.02
21 3 0.01
22 5 0.02
24 12 0.05
25 169 0.70
26 9 0.04
27 18 0.07
28 3 0.01
30 17 0.07
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (25 bp):
TACATAACTTACATAACTTACATAA
Found at i:77674944 original size:29 final size:29
Alignment explanation
Indices: 77674911--77674967 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
77674901 CTTACATAAC
77674911 TTACATTATACACAACTTACATAACTTAA
1 TTACATTATACACAACTTACATAACTTAA
** *
77674940 TTACATTATACATGATTTACATAACTTA
1 TTACATTATACACAACTTACATAACTTA
77674968 CATAACTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.42, C:0.18, G:0.02, T:0.39
Consensus pattern (29 bp):
TTACATTATACACAACTTACATAACTTAA
Found at i:77678409 original size:12 final size:12
Alignment explanation
Indices: 77678389--77678452 Score: 69
Period size: 12 Copynumber: 5.5 Consensus size: 12
77678379 TATTTTAGTG
* *
77678389 TTATGATCATTT
1 TTATTATCATTA
77678401 TTATTATCATTA
1 TTATTATCATTA
*
77678413 TTATTATTATTA
1 TTATTATCATTA
*
77678425 TTATTATTATTA
1 TTATTATCATTA
*
77678437 CTATTA--ATTA
1 TTATTATCATTA
77678447 TTATTA
1 TTATTA
77678453 GTTTCATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
10 9 0.19
12 38 0.81
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (12 bp):
TTATTATCATTA
Found at i:77678415 original size:3 final size:3
Alignment explanation
Indices: 77678401--77678452 Score: 77
Period size: 3 Copynumber: 17.0 Consensus size: 3
77678391 ATGATCATTT
* *
77678401 TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
77678447 TTA TTA
1 TTA TTA
77678453 GTTTCATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:77683729 original size:9 final size:9
Alignment explanation
Indices: 77683698--77683730 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
77683688 GAAGGCAACC
77683698 AAAAAT-AA
1 AAAAATAAA
*
77683706 AAAAACAAA
1 AAAAATAAA
77683715 AAAAATAAA
1 AAAAATAAA
77683724 AAAAATA
1 AAAAATA
77683731 TTGTAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 5 0.23
9 17 0.77
ACGTcount: A:0.88, C:0.03, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAAATAAA
Found at i:77684485 original size:9 final size:9
Alignment explanation
Indices: 77684471--77684521 Score: 68
Period size: 9 Copynumber: 5.8 Consensus size: 9
77684461 AAAATGTTTC
77684471 AAAAAAACA
1 AAAAAAACA
77684480 AAAAAAACA
1 AAAAAAACA
77684489 AAAAAAAC-
1 AAAAAAACA
*
77684497 AAAAAAATA
1 AAAAAAACA
* *
77684506 AGAAAAATA
1 AAAAAAACA
77684515 AAAAAAA
1 AAAAAAA
77684522 GGAAAAAAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
8 7 0.18
9 31 0.82
ACGTcount: A:0.88, C:0.06, G:0.02, T:0.04
Consensus pattern (9 bp):
AAAAAAACA
Found at i:77684492 original size:17 final size:17
Alignment explanation
Indices: 77684471--77684520 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
77684461 AAAATGTTTC
77684471 AAAAAAACAAAAAAAACA
1 AAAAAAAC-AAAAAAACA
*
77684489 AAAAAAACAAAAAAATA
1 AAAAAAACAAAAAAACA
* *
77684506 AGAAAAATAAAAAAA
1 AAAAAAACAAAAAAA
77684521 AGGAAAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 21 0.72
18 8 0.28
ACGTcount: A:0.88, C:0.06, G:0.02, T:0.04
Consensus pattern (17 bp):
AAAAAAACAAAAAAACA
Found at i:77684529 original size:26 final size:26
Alignment explanation
Indices: 77684470--77684521 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
77684460 AAAAATGTTT
77684470 CAAAAAAACAAAAAAAACAAAAAAAA
1 CAAAAAAACAAAAAAAACAAAAAAAA
* * *
77684496 CAAAAAAATAAGAAAAATAAAAAAAA
1 CAAAAAAACAAAAAAAACAAAAAAAA
77684522 GGAAAAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.87, C:0.08, G:0.02, T:0.04
Consensus pattern (26 bp):
CAAAAAAACAAAAAAAACAAAAAAAA
Found at i:77684543 original size:3 final size:3
Alignment explanation
Indices: 77684535--77684569 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
77684525 AAAAAGAGAG
77684535 AGA AGA AGA AGA AGA AGA AGA AGA AG- AGA A-A AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
77684570 AAGGAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:77684750 original size:44 final size:45
Alignment explanation
Indices: 77684657--77684768 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 45
77684647 AAAGGGCGGC
* *
77684657 TCAAATTTTGGAACAAAATGGGGCA-CGAAGTGATCAGAGCTACT
1 TCAAATTTTGGATCAAATTGGGGCATCGAAGTGATCAGAGCTACT
* ** * *
77684701 T-AAATTTTGGATCAAATTGGGGCATGGTGGTGATTAGAGC-AGT
1 TCAAATTTTGGATCAAATTGGGGCATCGAAGTGATCAGAGCTACT
* *
77684744 TCAAATTTT-GATCAGATCGGGGCAT
1 TCAAATTTTGGATCAAATTGGGGCAT
77684769 ATGATGATCT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
43 38 0.67
44 19 0.33
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (45 bp):
TCAAATTTTGGATCAAATTGGGGCATCGAAGTGATCAGAGCTACT
Found at i:77686184 original size:100 final size:99
Alignment explanation
Indices: 77686011--77687511 Score: 1552
Period size: 100 Copynumber: 15.1 Consensus size: 99
77686001 AAACCATAGT
* * *
77686011 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACCTT-TCAGG-TAGTGCAGCAGAACA
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCTCAGGCGA-TGCAGCGGAACA
* * *
77686074 GATTGAAGCTACAATGGTGAATCCTGCTTCCCCGACA
63 GATTGAAGCTACAACGGCGAATCCTACTTCCCCGACA
* * ** * *
77686111 TTGCAATATAAAATATTGAAGTCACAACGATGAATCTTACTTCTCAGGTGATGCAGCAGAACAGA
1 TTGCAAT-TAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGA
* * * *
77686176 TTGAAGCTACGACGGCGTAT-TTCACTTCCCTGACA
65 TTGAAGCTACAACGGCGAATCCT-ACTTCCCCGACA
* * *
77686211 TTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACCTT-TCAGGC-AGTACAGCAGAACA
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCTCAGGCGA-TGCAGCGGAACA
* * *
77686274 AATTGAAGCTACAACGACGAATCCTGCTTCCCCGACA
63 GATTGAAGCTACAACGGCGAATCCTACTTCCCCGACA
* * * * *
77686311 TTGTAATATAAAAGATTGAAGCCACAATGGTGAATCTTACTTCCCAGGCGATGCAGCGGAATAGA
1 TTGCAAT-TAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGA
* *
77686376 TTGAAGCTACGACGGCGAAT-CTAACTTCCCTGACA
65 TTGAAGCTACAACGGCGAATCCT-ACTTCCCCGACA
* * *
77686411 TTGCAATTTAAAAGGTTGAGGCCATAACGGCGAATCTTACCTTC-CTAGGCGATGCAGCGGAACA
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCTC-AGGCGATGCAGCGGAACA
* ** **
77686475 GATTGAAGCTACGACGATGAATTTTACTTCCCCGACA
63 GATTGAAGCTACAACGGCGAATCCTACTTCCCCGACA
* * ** * *
77686512 CTGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACTTCTTTGGCGATGCAGTGGAACAAA
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGA
* * ** *
77686577 TTGAAGCTACAATGGTGAATCCTGTTTCCTCGACA
65 TTGAAGCTACAACGGCGAATCCTACTTCCCCGACA
* *
77686612 TTGCAATTAAAAGATTGAAGCCACAACGACGAATCTTAC-T-TCAGACGATGCAGCGGAACAGAT
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGAT
* * *
77686675 TGAAGCTACGACGGCAAAT-CTCACTTCCCTGACA
66 TGAAGCTACAACGGCGAATCCT-ACTTCCCCGACA
* * * * *
77686709 TTACAATTAAAAAGATTGAAGCTACAACGGTGAATCTTACCTT-TTAGGC-AGTGCAACGGAACA
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCTCAGGCGA-TGCAGCGGAACA
* *
77686772 GATTGAAGCTACAACGGCGAATCCTGCTTCCTCGACA
63 GATTGAAGCTACAACGGCGAATCCTACTTCCCCGACA
* * * * *
77686809 TTGCAATATAAAAGATTGAAGTCACAACGGCGAATCTTACTTCCCAGGAGATGCAACAGAACAGA
1 TTGCAAT-TAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGA
*
77686874 TTGAAGCTACGACGGCGAAT-CTAACTTCCCCGACA
65 TTGAAGCTACAACGGCGAATCCT-ACTTCCCCGACA
* * *
77686909 TTGTAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACCTTC-CTAGGCGATGCAGCAGAACA
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGAATCTTA-CTTCTC-AGGCGATGCAGCGGAACA
* ** *
77686973 GATTGAAGCTACGACGATGAATCTTACTTCCCCGACA
63 GATTGAAGCTACAACGGCGAATCCTACTTCCCCGACA
* * * * *
77687010 TTGCAATTTAAAAGATTGAGGCCACAACGGTGAATCTTACTTCTCTGGCGATGTAGTGGAACAGA
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGA
* * *
77687075 TTGAAGCTACAATGGCGAATCCTGCTTCCTCGACA
65 TTGAAGCTACAACGGCGAATCCTACTTCCCCGACA
** **
77687110 TTGCAATTAAAAGATTGAAGCCACAACGATGAATCTTAC-T-TCAAACGATGCAGCGGAACAGAT
1 TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGAT
* * * *
77687173 TGAAGCCACAATGACGAATCTTACTTCCCCGACA
66 TGAAGCTACAACGGCGAATCCTACTTCCCCGACA
* * * *
77687207 TTGCAATTCAAAAGATTGAAGCTACAATGGCGAATCTTACTTC-CAAGCGATGCAGCTGAACAGA
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGA
* * * *
77687271 TTGAAG-TCACAACGGCGAATCTTGCTTCCTCGTCA
65 TTGAAGCT-ACAACGGCGAATCCTACTTCCCCGACA
* * * *
77687306 TTGCAATTGAAAATATTGAAGCCACAACGGCGAATTTTACTTC-CAAGCGATGTAGCGGAACAGA
1 TTGCAATT-AAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGA
**
77687370 TTGAAG-TCACAACGGCGAAT-CTCACTTCCCCGTTA
65 TTGAAGCT-ACAACGGCGAATCCT-ACTTCCCCGACA
* * * * * * * *
77687405 TTACAATTTAAAGGATTGAAGCCACTACGGCGAATCTTACTTCCCAAGCGGA-GCTGTGGAACAT
1 TTGCAA-TTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGC-GATGCAGCGGAACAG
* *
77687469 ATTGAAGCTACAACGGCGAATCCTGCTTCCCCGAAA
64 ATTGAAGCTACAACGGCGAATCCTACTTCCCCGACA
77687505 TTGCAAT
1 TTGCAAT
77687512 CTCATTTCCC
Statistics
Matches: 1185, Mismatches: 174, Indels: 85
0.82 0.12 0.06
Matches are distributed among these distances:
96 2 0.00
97 103 0.09
98 57 0.05
99 250 0.21
100 574 0.48
101 197 0.17
102 2 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (99 bp):
TTGCAATTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCTCAGGCGATGCAGCGGAACAGAT
TGAAGCTACAACGGCGAATCCTACTTCCCCGACA
Found at i:77686952 original size:498 final size:498
Alignment explanation
Indices: 77686012--77687511 Score: 2068
Period size: 498 Copynumber: 3.0 Consensus size: 498
77686002 AACCATAGTT
* * * * **
77686012 TGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTAC--CTTTCAGG-TAGTGCAGCAGAACA
1 TGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACTTCTTT--GGCGA-TGCAGTGGAACA
* * *
77686074 GATTGAAGCTACAATGGTGAATCCTGCTTCCCCGACATTGCAATATAAAATATTGAAGTCACAAC
63 GATTGAAGCTACAATGGTGAATCCTGCTTCCTCGACATTGCAAT-TAAAAGATTGAAGCCACAAC
** * * *
77686139 GATGAATCTTACTTCTCAGGTGATGCAGCAGAACAGATTGAAGCTACGACGGCGTATTTCACTTC
127 GATGAATCTTAC-T-TCAGACGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTCACTTC
*
77686204 CCTGACATTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACCTTTCAGGCAGTACAGCA
190 CCTGACATTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACCTTTCAGGCAGTGCAGCA
* * * *
77686269 GAACAAATTGAAGCTACAACGACGAATCCTGCTTCCCCGACATTGTAATATAAAAGATTGAAGCC
255 GAACAGATTGAAGCTACAACGGCGAATCCTGCTTCCTCGACATTGCAATATAAAAGATTGAAGCC
* * *
77686334 ACAATGGTGAATCTTACTTCCCAGGCGATGCAGCGGAATAGATTGAAGCTACGACGGCGAATCTA
320 ACAACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTA
* * *
77686399 ACTTCCCTGACATTGCAATTTAAAAGGTTGAGGCCATAACGGCGAATCTTACCTTCCTAGGCGAT
385 ACTTCCCCGACATTGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACCTTCCTAGGCGAT
*
77686464 GCAGCGGAACAGATTGAAGCTACGACGATGAATTTTACTTCCCCGACAC
450 GCAGCGGAACAGATTGAAGCTACGACGATGAATCTTACTTCCCCGACAC
*
77686513 TGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACTTCTTTGGCGATGCAGTGGAACAAAT
1 TGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACTTCTTTGGCGATGCAGTGGAACAGAT
* *
77686578 TGAAGCTACAATGGTGAATCCTGTTTCCTCGACATTGCAATTAAAAGATTGAAGCCACAACGACG
66 TGAAGCTACAATGGTGAATCCTGCTTCCTCGACATTGCAATTAAAAGATTGAAGCCACAACGATG
*
77686643 AATCTTACTTCAGACGATGCAGCGGAACAGATTGAAGCTACGACGGCAAATCTCACTTCCCTGAC
131 AATCTTACTTCAGACGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTCACTTCCCTGAC
* * * * *
77686708 ATTACAATTAAAAAGATTGAAGCTACAACGGTGAATCTTACCTTTTAGGCAGTGCAACGGAACAG
196 ATTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACCTTTCAGGCAGTGCAGCAGAACAG
*
77686773 ATTGAAGCTACAACGGCGAATCCTGCTTCCTCGACATTGCAATATAAAAGATTGAAGTCACAACG
261 ATTGAAGCTACAACGGCGAATCCTGCTTCCTCGACATTGCAATATAAAAGATTGAAGCCACAACG
* * *
77686838 GCGAATCTTACTTCCCAGGAGATGCAACAGAACAGATTGAAGCTACGACGGCGAATCTAACTTCC
326 GCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTAACTTCC
* *
77686903 CCGACATTGTAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACCTTCCTAGGCGATGCAGCA
391 CCGACATTGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACCTTCCTAGGCGATGCAGCG
*
77686968 GAACAGATTGAAGCTACGACGATGAATCTTACTTCCCCGACAT
456 GAACAGATTGAAGCTACGACGATGAATCTTACTTCCCCGACAC
* * *
77687011 TGCAATTTAAAAGATTGAGGCCACAACGGTGAATCTTACTTCTCTGGCGATGTAGTGGAACAGAT
1 TGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACTTCTTTGGCGATGCAGTGGAACAGAT
*
77687076 TGAAGCTACAATGGCGAATCCTGCTTCCTCGACATTGCAATTAAAAGATTGAAGCCACAACGATG
66 TGAAGCTACAATGGTGAATCCTGCTTCCTCGACATTGCAATTAAAAGATTGAAGCCACAACGATG
* * * * * * *
77687141 AATCTTACTTCAAACGATGCAGCGGAACAGATTGAAGCCACAATGACGAATCTTACTTCCCCGAC
131 AATCTTACTTCAGACGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTCACTTCCCTGAC
* * * * *
77687206 ATTGCAATTCAAAAGATTGAAGCTACAATGGCGAATCTTA-CTTCCAAGC-GATGCAGCTGAACA
196 ATTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACCTTTCAGGCAG-TGCAGCAGAACA
* * *
77687269 GATTGAAG-TCACAACGGCGAATCTTGCTTCCTCGTCATTGCAAT-TGAAAATATTGAAGCCACA
260 GATTGAAGCT-ACAACGGCGAATCCTGCTTCCTCGACATTGCAATAT-AAAAGATTGAAGCCACA
* * * * *
77687332 ACGGCGAATTTTACTT-CCAAGCGATGTAGCGGAACAGATTGAAG-TCACAACGGCGAATCTCAC
323 ACGGCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCT-ACGACGGCGAATCTAAC
** * * * * * *
77687395 TTCCCCGTTATTACAATTTAAAGGATTGAAGCCACTACGGCGAATCTTA-CTTCCCAAGCGGA-G
387 TTCCCCGACATTGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACCTTCCTAGGC-GATG
* * * * ** * * * *
77687458 CTGTGGAACATATTGAAGCTACAACGGCGAATCCTGCTTCCCCGAAAT
451 CAGCGGAACAGATTGAAGCTACGACGATGAATCTTACTTCCCCGACAC
77687506 TGCAAT
1 TGCAAT
77687512 CTCATTTCCC
Statistics
Matches: 894, Mismatches: 97, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
495 54 0.06
496 85 0.10
497 86 0.10
498 545 0.61
499 1 0.00
500 29 0.03
501 89 0.10
502 1 0.00
503 4 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (498 bp):
TGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACTTCTTTGGCGATGCAGTGGAACAGAT
TGAAGCTACAATGGTGAATCCTGCTTCCTCGACATTGCAATTAAAAGATTGAAGCCACAACGATG
AATCTTACTTCAGACGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTCACTTCCCTGAC
ATTGCAATTAAAAAGATTGAAGCTACAACGGCGAATCTTACCTTTCAGGCAGTGCAGCAGAACAG
ATTGAAGCTACAACGGCGAATCCTGCTTCCTCGACATTGCAATATAAAAGATTGAAGCCACAACG
GCGAATCTTACTTCCCAGGCGATGCAGCGGAACAGATTGAAGCTACGACGGCGAATCTAACTTCC
CCGACATTGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACCTTCCTAGGCGATGCAGCG
GAACAGATTGAAGCTACGACGATGAATCTTACTTCCCCGACAC
Found at i:77687272 original size:147 final size:147
Alignment explanation
Indices: 77686821--77687349 Score: 413
Period size: 147 Copynumber: 3.5 Consensus size: 147
77686811 GCAATATAAA
* * * * *
77686821 AGATTGAAGTCACAACGGCGAATCTTACTTCCCAGGA-GATGCAACAGAACAGATTGAAGCTACG
1 AGATTGAAGCCACAACGACGAATCTTACTT--CA-AACGATGCAACAGAACAGATTGAAGCCACA
* * * * *
77686885 ACGGCGAATCTAACTTCCCCGACATTGTAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACC
63 ACGGCGAATCTTACTTCCCCGACATTGTAATTCAAAAGATTGAAGCTACAATGGCGAATCTTA-C
* *
77686950 TTCCTAGGCGATGCAGCAGAAC
127 TTCC-AAGCGATGCAGCTGAAC
* * * ** *** * *
77686972 AGATTGAAGCTACGACGATGAATCTTACTTC-CCCGACATTGCAATTTAAAAGATTGAGGCCACA
1 AGATTGAAGCCACAACGACGAATCTTACTTCAAACG--A-TGCAACAGAACAGATTGAAGCCACA
* * * * * ** * * *
77687036 ACGGTGAATCTTACTTCTCTGGCGA-TGTAGTGGAACAGATTGAAGCTACAATGGCGAATCCTGC
63 ACGGCGAATCTTACTTCCCCGAC-ATTGTAATTCAAAAGATTGAAGCTACAATGGCGAATCTTAC
** * * *
77687100 TTCCTCGAC-ATTGCA-ATTAAA
127 TTCCAAG-CGA-TGCAGCTGAAC
* * * *
77687121 AGATTGAAGCCACAACGATGAATCTTACTTCAAACGATGCAGCGGAACAGATTGAAGCCACAATG
1 AGATTGAAGCCACAACGACGAATCTTACTTCAAACGATGCAACAGAACAGATTGAAGCCACAACG
* *
77687186 ACGAATCTTACTTCCCCGACATTGCAATTCAAAAGATTGAAGCTACAATGGCGAATCTTACTTCC
66 GCGAATCTTACTTCCCCGACATTGTAATTCAAAAGATTGAAGCTACAATGGCGAATCTTACTTCC
77687251 AAGCGATGCAGCTGAAC
131 AAGCGATGCAGCTGAAC
* * * ** ** * *
77687268 AGATTGAAGTCACAACGGCGAATCTTGCTTC-CTCGTCATTGCAATTGAAAATATTGAAGCCACA
1 AGATTGAAGCCACAACGACGAATCTTACTTCAAACG--A-TGCAACAGAACAGATTGAAGCCACA
*
77687332 ACGGCGAATTTTACTTCC
63 ACGGCGAATCTTACTTCC
77687350 AAGCGATGTA
Statistics
Matches: 288, Mismatches: 76, Indels: 30
0.73 0.19 0.08
Matches are distributed among these distances:
146 8 0.03
147 104 0.36
148 3 0.01
149 69 0.24
150 13 0.05
151 90 0.31
152 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (147 bp):
AGATTGAAGCCACAACGACGAATCTTACTTCAAACGATGCAACAGAACAGATTGAAGCCACAACG
GCGAATCTTACTTCCCCGACATTGTAATTCAAAAGATTGAAGCTACAATGGCGAATCTTACTTCC
AAGCGATGCAGCTGAAC
Found at i:77687397 original size:49 final size:49
Alignment explanation
Indices: 77686125--77687490 Score: 437
Period size: 50 Copynumber: 27.4 Consensus size: 49
77686115 AATATAAAAT
* ** * * *
77686125 ATTGAAGTCACAACGATGAATCTTACTTCTCAGGTGATGCAGCAGAACAG
1 ATTGAAGCCACAACGGCGAATCTTACTTC-CAAGCGATGCAGCTGAACAG
* * * ** ** * *
77686175 ATTGAAGCTACGACGGCGTAT-TTCACTTCCCTGAC-ATTGCAATTAAAAAG
1 ATTGAAGCCACAACGGCGAATCTT-ACTTCCAAG-CGA-TGCAGCTGAACAG
* * * * * *
77686225 ATTGAAGCTACAACGGCGAATCTTACCTTTCAGGC-AGTACAGCAGAACAA
1 ATTGAAGCCACAACGGCGAATCTTA-CTTCCAAGCGA-TGCAGCTGAACAG
* * * * ** * * * *
77686275 ATTGAAGCTACAACGACGAATCCTGCTTCCCCGAC-ATTGTA-ATATAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCT-GAACAG
* * * * *
77686325 ATTGAAGCCACAATGGTGAATCTTACTTCCCAGGCGATGCAGCGGAATAG
1 ATTGAAGCCACAACGGCGAATCTTACTT-CCAAGCGATGCAGCTGAACAG
* * * ** ** * *
77686375 ATTGAAGCTACGACGGCGAATCTAACTTCCCTGAC-ATTGCAATTTAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
* * * * *
77686425 GTTGAGGCCATAACGGCGAATCTTACCTTCCTAGGCGATGCAGCGGAACAG
1 ATTGAAGCCACAACGGCGAATCTTA-CTTCC-AAGCGATGCAGCTGAACAG
* * ** * ** ** * *
77686476 ATTGAAGCTACGACGATGAATTTTACTTCCCCGAC-ACTGCAATTTAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
* *** *
77686526 ATTGAGGCCACAACGGCGAATCTTACTTCTTTGGCGATGCAG-TGGAACAA
1 ATTGAAGCCACAACGGCGAATCTTACTTC-CAAGCGATGCAGCT-GAACAG
* * * * ** ** * * *
77686576 ATTGAAGCTACAATGGTGAATCCTGTTTCCTCGAC-ATTGCA-ATTAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
* *
77686625 ATTGAAGCCACAACGACGAATCTTACTT-C-AGACGATGCAGCGGAACAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGATGCAGCTGAACAG
* * * * ** * ** * *
77686673 ATTGAAGCTACGACGGCAAATCTCACTTCCCTGAC-ATTACAATTAAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
* * ** * * *
77686723 ATTGAAGCTACAACGGTGAATCTTACCTTTTAGGC-AGTGCAACGGAACAG
1 ATTGAAGCCACAACGGCGAATCTTA-CTTCCAAGCGA-TGCAGCTGAACAG
* * * ** * * *
77686773 ATTGAAGCTACAACGGCGAATCCTGCTTCCTCGAC-ATTGCA-ATATAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCT-GAACAG
* * * * *
77686823 ATTGAAGTCACAACGGCGAATCTTACTTCCCAGGAGATGCAACAGAACAG
1 ATTGAAGCCACAACGGCGAATCTTACTT-CCAAGCGATGCAGCTGAACAG
* * * ** * ** * *
77686873 ATTGAAGCTACGACGGCGAATCTAACTTCCCCGAC-ATTGTAATTTAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
* * *
77686923 ATTGAGGCCACAACGGCGAATCTTACCTTCCTAGGCGATGCAGCAGAACAG
1 ATTGAAGCCACAACGGCGAATCTTA-CTTCC-AAGCGATGCAGCTGAACAG
* * ** ** ** * *
77686974 ATTGAAGCTACGACGATGAATCTTACTTCCCCGAC-ATTGCAATTTAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
* * ** *
77687024 ATTGAGGCCACAACGGTGAATCTTACTTCTCTGGCGATGTAG-TGGAACAG
1 ATTGAAGCCACAACGGCGAATCTTACTTC-CAAGCGATGCAGCT-GAACAG
* * * * ** * * *
77687074 ATTGAAGCTACAATGGCGAATCCTGCTTCCTCGAC-ATTGCA-ATTAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
** * *
77687123 ATTGAAGCCACAACGATGAATCTTACTT-CAAACGATGCAGCGGAACAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAGCGATGCAGCTGAACAG
* * ** ** * *
77687171 ATTGAAGCCACAATGACGAATCTTACTTCCCCGAC-ATTGCAATTCAAAAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
* *
77687221 ATTGAAGCTACAATGGCGAATCTTACTTCCAAGCGATGCAGCTGAACAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAGCGATGCAGCTGAACAG
* * ** ** * *
77687270 ATTGAAGTCACAACGGCGAATCTTGCTTCCTCGTC-ATTGCAATTGAAAAT
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAG-CGA-TGCAGCTGAACAG
* * *
77687320 ATTGAAGCCACAACGGCGAATTTTACTTCCAAGCGATGTAGCGGAACAG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAGCGATGCAGCTGAACAG
* * ** ** * ** *
77687369 ATTGAAGTCACAACGGCGAATCTCACTTCCCCGTTATTACAATTTAA-AGG
1 ATTGAAGCCACAACGGCGAATCTTACTTCCAAGCGA-TGCAGCTGAACA-G
* * *
77687419 ATTGAAGCCACTACGGCGAATCTTACTTCCCAAGCGGA-GCTG-TGGAACAT
1 ATTGAAGCCACAACGGCGAATCTTACTT-CCAAGC-GATGCAGCT-GAACAG
*
77687469 ATTGAAGCTACAACGGCGAATC
1 ATTGAAGCCACAACGGCGAATC
77687491 CTGCTTCCCC
Statistics
Matches: 939, Mismatches: 315, Indels: 124
0.68 0.23 0.09
Matches are distributed among these distances:
47 12 0.01
48 61 0.06
49 166 0.18
50 603 0.64
51 92 0.10
52 5 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (49 bp):
ATTGAAGCCACAACGGCGAATCTTACTTCCAAGCGATGCAGCTGAACAG
Found at i:77689431 original size:12 final size:12
Alignment explanation
Indices: 77689411--77689474 Score: 69
Period size: 12 Copynumber: 5.5 Consensus size: 12
77689401 TATTTTAGTG
* *
77689411 TTATGATCATTT
1 TTATTATCATTA
77689423 TTATTATCATTA
1 TTATTATCATTA
*
77689435 TTATTATTATTA
1 TTATTATCATTA
*
77689447 TTATTATTATTA
1 TTATTATCATTA
*
77689459 CTATTA--ATTA
1 TTATTATCATTA
77689469 TTATTA
1 TTATTA
77689475 GTTTCATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
10 9 0.19
12 38 0.81
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.61
Consensus pattern (12 bp):
TTATTATCATTA
Found at i:77689437 original size:3 final size:3
Alignment explanation
Indices: 77689423--77689474 Score: 77
Period size: 3 Copynumber: 17.0 Consensus size: 3
77689413 ATGATCATTT
* *
77689423 TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA
77689469 TTA TTA
1 TTA TTA
77689475 GTTTCATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:77690390 original size:108 final size:106
Alignment explanation
Indices: 77690257--77690457 Score: 314
Period size: 108 Copynumber: 1.9 Consensus size: 106
77690247 AATAATAAAG
*
77690257 GCAATGTTTTGCGTTTGGAGATTCGAGAAAATATGTCCTAATGTGCTGAATTTCGATTTTTCTCG
1 GCAATGTTTTGCGTTTGGAAATTCGAGAAAATATGTCCTAATGTGCTGAATTTCGA--TTTCTCG
*
77690322 TTCT-AACAAATAGCCAAATATCCTTTTAAAATTTCAAAGTAAT
64 TT-TGAACAAATAGCCAAATATCCTCTTAAAATTTCAAAGTAAT
* **
77690365 GCAATGTTTTGCGTTTGGAAATTCGAGAAAATGTGTCCTAATGTGCTGCGTTTCGATTTCTCGTT
1 GCAATGTTTTGCGTTTGGAAATTCGAGAAAATATGTCCTAATGTGCTGAATTTCGATTTCTCGTT
*
77690430 TGACCAAATAGCCAAATATCCTCTTAAA
66 TGAACAAATAGCCAAATATCCTCTTAAA
77690458 TCTTAATCCA
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
105 1 0.01
106 33 0.38
108 52 0.60
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (106 bp):
GCAATGTTTTGCGTTTGGAAATTCGAGAAAATATGTCCTAATGTGCTGAATTTCGATTTCTCGTT
TGAACAAATAGCCAAATATCCTCTTAAAATTTCAAAGTAAT
Found at i:77693510 original size:21 final size:21
Alignment explanation
Indices: 77693486--77693546 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
77693476 TATGTTGATT
77693486 ATATTTCCCATTTCGATTACG
1 ATATTTCCCATTTCGATTACG
**
77693507 ATA-TTAACA--TC-ATT--G
1 ATATTTCCCATTTCGATTACG
77693522 -TATTTCCCATTTCGATTACG
1 ATATTTCCCATTTCGATTACG
77693542 ATATT
1 ATATT
77693547 AACATCATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 14
0.62 0.09 0.30
Matches are distributed among these distances:
14 2 0.07
15 5 0.17
17 5 0.17
18 5 0.17
20 5 0.17
21 7 0.24
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.44
Consensus pattern (21 bp):
ATATTTCCCATTTCGATTACG
Found at i:77693533 original size:35 final size:35
Alignment explanation
Indices: 77693487--77693555 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
77693477 ATGTTGATTA
77693487 TATTTCCCATTTCGATTACGATATTAACATCATTG
1 TATTTCCCATTTCGATTACGATATTAACATCATTG
77693522 TATTTCCCATTTCGATTACGATATTAACATCATT
1 TATTTCCCATTTCGATTACGATATTAACATCATT
77693556 CATTCACTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.43
Consensus pattern (35 bp):
TATTTCCCATTTCGATTACGATATTAACATCATTG
Found at i:77694148 original size:28 final size:23
Alignment explanation
Indices: 77694117--77694171 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 23
77694107 TCTTGAGTTC
*
77694117 TTTTTCTTTTTCATTTACTTACTTTTA
1 TTTTTATTTTT-ATTT--TTAC-TTTA
77694144 TTTTTATTTTTATTTTTACTTTA
1 TTTTTATTTTTATTTTTACTTTA
77694167 TTTTT
1 TTTTT
77694172 TGAGTTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 9 0.33
24 4 0.15
26 4 0.15
27 10 0.37
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTTATTTTTATTTTTACTTTA
Found at i:77694150 original size:6 final size:6
Alignment explanation
Indices: 77694139--77694171 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
77694129 ATTTACTTAC
*
77694139 TTTTAT TTTTAT TTTTAT TTTTA- CTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
77694172 TGAGTTTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:77694172 original size:12 final size:12
Alignment explanation
Indices: 77694135--77694171 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
77694125 TTTCATTTAC
77694135 TTACTTTTATTT
1 TTACTTTTATTT
*
77694147 TTATTTTTATTT
1 TTACTTTTATTT
77694159 TTAC-TTTATTT
1 TTACTTTTATTT
77694170 TT
1 TT
77694172 TGAGTTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (12 bp):
TTACTTTTATTT
Found at i:77694913 original size:23 final size:22
Alignment explanation
Indices: 77694883--77694925 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
77694873 AATAATAATA
77694883 TTATTATTACTATTGATATTAT
1 TTATTATTACTATTGATATTAT
* *
77694905 TTATATATTTCTATTTATATT
1 TTAT-TATTACTATTGATATT
77694926 TATGTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (22 bp):
TTATTATTACTATTGATATTAT
Found at i:77695715 original size:20 final size:20
Alignment explanation
Indices: 77695687--77695735 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
77695677 CTCAAGTTTT
*
77695687 TAAACGATCACGGGAATTAA
1 TAAAAGATCACGGGAATTAA
*
77695707 TAAAAGATCTCGGGAATTAA
1 TAAAAGATCACGGGAATTAA
77695727 TAAAAGATC
1 TAAAAGATC
77695736 GTGTCTTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.22
Consensus pattern (20 bp):
TAAAAGATCACGGGAATTAA
Found at i:77696153 original size:77 final size:77
Alignment explanation
Indices: 77696008--77696160 Score: 272
Period size: 78 Copynumber: 2.0 Consensus size: 77
77695998 TATCCTTTTT
*
77696008 AAAAAATTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
1 AAAAAATTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTG
77696073 GGTTTCGATTTA
66 GGTTTCGATTTA
*
77696085 AAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACATGCCCTAATGTGCT
1 AAAAAA-TTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCT
77696149 GGGTTTCGATTT
65 GGGTTTCGATTT
77696161 CTCGTTTAAC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
77 35 0.48
78 38 0.52
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (77 bp):
AAAAAATTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTG
GGTTTCGATTTA
Found at i:77698535 original size:41 final size:40
Alignment explanation
Indices: 77698416--77698535 Score: 132
Period size: 41 Copynumber: 2.9 Consensus size: 40
77698406 TTCTTACCTT
*
77698416 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGTCGCCAATGA
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCG-CGCTAATGA
* * ** * * *
77698457 TCAGGGCTCTAATGGCATTTTTGAAAATGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCG-CGCTAATGA
*
77698498 TCGGGGTTTTAGCGGCGTTTTTGAAAAAGCGCAGCTAA
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGC-GCTAA
77698536 AAACATTTTT
Statistics
Matches: 62, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
40 1 0.02
41 61 0.98
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.28
Consensus pattern (40 bp):
TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCGCTAATGA
Found at i:77705796 original size:11 final size:11
Alignment explanation
Indices: 77705770--77705847 Score: 58
Period size: 11 Copynumber: 7.4 Consensus size: 11
77705760 AATTAATCCT
77705770 CTCTCAAATTTA
1 CTCTC-AATTTA
*
77705782 CTCTCAATTTC
1 CTCTCAATTTA
*
77705793 CTCTCAATTTG
1 CTCTCAATTTA
77705804 CTCTCAA---A
1 CTCTCAATTTA
77705812 -TC-CATATTTA
1 CTCTCA-ATTTA
* *
77705822 ATCTCAATTTG
1 CTCTCAATTTA
*
77705833 CTCTCAATTTT
1 CTCTCAATTTA
77705844 CTCT
1 CTCT
77705848 TAAATTTCTC
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
6 2 0.04
7 3 0.06
10 1 0.02
11 41 0.76
12 7 0.13
ACGTcount: A:0.24, C:0.28, G:0.03, T:0.45
Consensus pattern (11 bp):
CTCTCAATTTA
Found at i:77705821 original size:40 final size:40
Alignment explanation
Indices: 77705777--77705852 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
77705767 CCTCTCTCAA
*
77705777 ATTTACTCTCAATTTCCTCTCAATTTGCTCTCAAATCCAT
1 ATTTAATCTCAATTTCCTCTCAATTTGCTCTCAAATCCAT
* * *
77705817 ATTTAATCTCAATTTGCTCTCAATTTTCTCTTAAAT
1 ATTTAATCTCAATTTCCTCTCAATTTGCTCTCAAAT
77705853 TTCTCTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.26, C:0.25, G:0.03, T:0.46
Consensus pattern (40 bp):
ATTTAATCTCAATTTCCTCTCAATTTGCTCTCAAATCCAT
Found at i:77705838 original size:51 final size:52
Alignment explanation
Indices: 77705771--77705871 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 52
77705761 ATTAATCCTC
*
77705771 TCTCAAATTTACTCTCAATTTCCTC-TCAATTTGCTCTCAAATCCATATTTAA
1 TCTCAAATTTACTCTCAATTTCCTCTTAAATTT-CTCTCAAATCCATATTTAA
* * * *
77705823 TCTC-AATTTGCTCTCAATTTTCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAAATTTACTCTCAATTTCCTCTTAAATTTCTCTCAAATCCATATTT
77705872 TTAAATAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 33 0.77
52 10 0.23
ACGTcount: A:0.26, C:0.26, G:0.02, T:0.47
Consensus pattern (52 bp):
TCTCAAATTTACTCTCAATTTCCTCTTAAATTTCTCTCAAATCCATATTTAA
Found at i:77707891 original size:13 final size:13
Alignment explanation
Indices: 77707850--77707892 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
77707840 TAGATTTTTC
77707850 CTAAATATTATCA
1 CTAAATATTATCA
*
77707863 CCAAATA--ATC-
1 CTAAATATTATCA
77707873 CTAAATATTATCA
1 CTAAATATTATCA
77707886 CTAAATA
1 CTAAATA
77707893 ATTTAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.49, C:0.19, G:0.00, T:0.33
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:77707901 original size:23 final size:23
Alignment explanation
Indices: 77707848--77707894 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
77707838 GTTAGATTTT
77707848 TCCTAAATATTATCACCAAATAA
1 TCCTAAATATTATCACCAAATAA
*
77707871 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACCAAATAA
77707894 T
1 T
77707895 TTAAAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (23 bp):
TCCTAAATATTATCACCAAATAA
Found at i:77708629 original size:19 final size:19
Alignment explanation
Indices: 77708607--77708656 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
77708597 AAAAATAATC
*
77708607 CAAAATAATTT-TTAAAATT
1 CAAAAT-ATTTATAAAAATT
77708626 CAAAATATTTATAAAAATT
1 CAAAATATTTATAAAAATT
*
77708645 CTAAA-ATTTATA
1 CAAAATATTTATA
77708657 TTTTTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 11 0.39
19 17 0.61
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (19 bp):
CAAAATATTTATAAAAATT
Found at i:77710038 original size:60 final size:60
Alignment explanation
Indices: 77709945--77710065 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
77709935 TTGCTTGAAG
77709945 TACTTTGTGGTAGAAAAGTATTAAAGTTTGACGCAGGGGACCATAATCATCGTCATATAA
1 TACTTTGTGGTAGAAAAGTATTAAAGTTTGACGCAGGGGACCATAATCATCGTCATATAA
77710005 TACTTTGTGGTAGAAAAGTATTAAAGTTTGACGCAGGGGACCATAATCATCGTCATATAA
1 TACTTTGTGGTAGAAAAGTATTAAAGTTTGACGCAGGGGACCATAATCATCGTCATATAA
77710065 T
1 T
77710066 TTCTTGGGTC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (60 bp):
TACTTTGTGGTAGAAAAGTATTAAAGTTTGACGCAGGGGACCATAATCATCGTCATATAA
Found at i:77730549 original size:13 final size:13
Alignment explanation
Indices: 77730531--77730556 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77730521 ATAAGAGTTA
77730531 AAATATCAAATTT
1 AAATATCAAATTT
77730544 AAATATCAAATTT
1 AAATATCAAATTT
77730557 GAGTGAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
AAATATCAAATTT
Found at i:77733087 original size:9 final size:10
Alignment explanation
Indices: 77733069--77733098 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
77733059 AAAAGGTTAA
77733069 AAATATTTTT
1 AAATATTTTT
77733079 AAATATTTTT
1 AAATATTTTT
77733089 AAA-ATTTTT
1 AAATATTTTT
77733098 A
1 A
77733099 GAGTTAAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.35
10 13 0.65
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
AAATATTTTT
Found at i:77734074 original size:15 final size:15
Alignment explanation
Indices: 77734048--77734086 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
77734038 GTGGTATCAA
77734048 AACATA-TC-AATTC
1 AACATATTCAAATTC
*
77734061 AACTTATTCAAATTC
1 AACATATTCAAATTC
77734076 AACATATTCAA
1 AACATATTCAA
77734087 TCATTCACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 5 0.23
14 2 0.09
15 15 0.68
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (15 bp):
AACATATTCAAATTC
Found at i:77751103 original size:21 final size:20
Alignment explanation
Indices: 77751062--77751107 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
77751052 TAAGTAGCTC
**
77751062 AAAAAATATTAAAAGGGTAT
1 AAAAAATATTAAAAGAATAT
*
77751082 AAAAAATAGTTAAAATAATAT
1 AAAAAATA-TTAAAAGAATAT
77751103 AAAAA
1 AAAAA
77751108 TAACCATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (20 bp):
AAAAAATATTAAAAGAATAT
Found at i:77751407 original size:24 final size:24
Alignment explanation
Indices: 77751354--77751454 Score: 79
Period size: 24 Copynumber: 4.3 Consensus size: 24
77751344 CTAAATAATG
* *
77751354 ATATGATAAGTTTAAAATTATAGT
1 ATATGATAAATTTTAAATTATAGT
*
77751378 ACATGATAAATTTTAAATTAT-GAT
1 ATATGATAAATTTTAAATTATAG-T
* *
77751402 ATATGATAGA-TTTAAA-TAGTACT
1 ATATGATAAATTTTAAATTA-TAGT
*
77751425 -TATGAT-AA-TTTAAGATAATAGT
1 ATATGATAAATTTTAA-ATTATAGT
77751447 ATATGATA
1 ATATGATA
77751455 TTAAAATAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 14
0.73 0.11 0.17
Matches are distributed among these distances:
21 6 0.10
22 12 0.20
23 16 0.26
24 27 0.44
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.41
Consensus pattern (24 bp):
ATATGATAAATTTTAAATTATAGT
Found at i:77755473 original size:354 final size:354
Alignment explanation
Indices: 77754824--77755536 Score: 1095
Period size: 354 Copynumber: 2.0 Consensus size: 354
77754814 ATATGACAAT
* * ** *
77754824 TGATGCTACATGAGCATGCGCTCGCTCGTGTGGAAATTCAAACGCATAAAATGTGAGCGTTAGAC
1 TGATGCTACACGAGCATGCGCTCGCTCGTGTAGAAATTCAAACGCATAAAACATGAGCGTCAGAC
* *
77754889 TATTGAGGCCACCGTGAGCGAATCGTGGTCTTCGGCCGTTTTACGCCATGTTGGGCCAAAATGGA
66 TATTGAGGCCACCATGAGCGAATCATGGTCTTCGGCCGTTTTACGCCATGTTGGGCCAAAATGGA
* ** ** *
77754954 CTGTGTGGGCCCAATAGGCTTGTGGGCCTCACATGGGTAAATGAAATGAACGTGACAAGATTATT
131 CCGTGTGGGCCCAATAGGCTTGTGGGAATCACATGGGTAAACCAAACGAACGTGACAAGATTATT
77755019 AGGCCAAACTATGTGGTTTTCATGACAAAGACCAATTTTGGGCTATGTGGGCCACACGGGCGTGT
196 AGGCCAAACTATGTGGTTTTCATGACAAAGACCAATTTTGGGCTATGTGGGCCACACGGGCGTGT
* *
77755084 GGACCCGCATGAGCTCGCATTATAGGCATTTGGCCCAATTTCACTGTTTGACTATTAAGGTTGCA
261 GGACCCGCATGAGCTCGCATTATAGGCATTTGGCCCAATTTCACTATTTGACTACTAAGGTTGCA
** *
77755149 CAGGTTGCCCGAGAGGACTGTGGACCTAC
326 CAAATAGCCCGAGAGGACTGTGGACCTAC
* * * *
77755178 TGATGCTACACGAGCGTGTGCTTGCTCGTGTAGAAATTCATACGCATAAAACAT-AGGCGTCAGA
1 TGATGCTACACGAGCATGCGCTCGCTCGTGTAGAAATTCAAACGCATAAAACATGA-GCGTCAGA
* ** *
77755242 CTATTGAGGGCACCATGAGCGAATCATGGTCTTCGGCCGTTTTGGGCCATGTTGGGCCGAAATGG
65 CTATTGAGGCCACCATGAGCGAATCATGGTCTTCGGCCGTTTTACGCCATGTTGGGCCAAAATGG
* * * * *
77755307 GCCGTGTGGGCCCAATGGGCTTGTGGGAATCACATGGGTAAACCACACGAATGTGACGAGATTAT
130 ACCGTGTGGGCCCAATAGGCTTGTGGGAATCACATGGGTAAACCAAACGAACGTGACAAGATTAT
* * *
77755372 TAGGCCAAACTATGTGGTTTTCATGACCAAGACCAATTTTTGGCTATGTGGGCCATACGGGCGTG
195 TAGGCCAAACTATGTGGTTTTCATGACAAAGACCAATTTTGGGCTATGTGGGCCACACGGGCGTG
*
77755437 TGGACCCGCATGAGCTCGCATTATAGGCATTTGGCCCAATTTTACTATTTGACTACTAAGGTTGC
260 TGGACCCGCATGAGCTCGCATTATAGGCATTTGGCCCAATTTCACTATTTGACTACTAAGGTTGC
77755502 ACAAATAGCCCGAGAGGACTGTGGACCTAC
325 ACAAATAGCCCGAGAGGACTGTGGACCTAC
77755532 TGATG
1 TGATG
77755537 GGTCGATAAG
Statistics
Matches: 323, Mismatches: 35, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
353 1 0.00
354 322 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (354 bp):
TGATGCTACACGAGCATGCGCTCGCTCGTGTAGAAATTCAAACGCATAAAACATGAGCGTCAGAC
TATTGAGGCCACCATGAGCGAATCATGGTCTTCGGCCGTTTTACGCCATGTTGGGCCAAAATGGA
CCGTGTGGGCCCAATAGGCTTGTGGGAATCACATGGGTAAACCAAACGAACGTGACAAGATTATT
AGGCCAAACTATGTGGTTTTCATGACAAAGACCAATTTTGGGCTATGTGGGCCACACGGGCGTGT
GGACCCGCATGAGCTCGCATTATAGGCATTTGGCCCAATTTCACTATTTGACTACTAAGGTTGCA
CAAATAGCCCGAGAGGACTGTGGACCTAC
Found at i:77755627 original size:27 final size:27
Alignment explanation
Indices: 77755569--77755634 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
77755559 CCCAAACTGA
* *
77755569 TATAAAGTGACTGTTATGCCCCCACGT
1 TATAAAATGACTGTTATGCCCCCACAT
* ** *
77755596 GATAAAATGACTGTTATGCCCTTATAT
1 TATAAAATGACTGTTATGCCCCCACAT
77755623 TATAAAATGACT
1 TATAAAATGACT
77755635 ATATGCTTTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (27 bp):
TATAAAATGACTGTTATGCCCCCACAT
Found at i:77755971 original size:32 final size:32
Alignment explanation
Indices: 77755923--77755983 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
77755913 TTACTGTCAC
77755923 TGTAATGGGCTAAGG-CCACACTGATACTGATAT
1 TGTAATGGGCTAAGGCCCA-ACTGA-ACTGATAT
77755956 TGTAAT-GGCTAAGGCCCAACTGAACTGA
1 TGTAATGGGCTAAGGCCCAACTGAACTGA
77755984 ACTATTATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
31 5 0.19
32 13 0.48
33 9 0.33
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (32 bp):
TGTAATGGGCTAAGGCCCAACTGAACTGATAT
Found at i:77761377 original size:46 final size:44
Alignment explanation
Indices: 77761318--77761432 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
77761308 ACAGGACAGA
* *
77761318 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
77761364 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
77761408 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
77761433 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:77761413 original size:44 final size:45
Alignment explanation
Indices: 77761318--77761451 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
77761308 ACAGGACAGA
* *
77761318 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
77761364 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
77761408 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
77761452 CAGGGTATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:77763306 original size:30 final size:31
Alignment explanation
Indices: 77763270--77763337 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 31
77763260 TTTTATAAAT
*
77763270 TATTTAAATAA-TG-AAAAATAATTTTATTTA
1 TATTTAAATAATTGAAAAAAT-ACTTTATTTA
77763300 TATTTAAATAATTTGAAAAAATACTTTATTTA
1 TATTTAAATAA-TTGAAAAAATACTTTATTTA
*
77763332 AATTTA
1 TATTTA
77763338 TCACCTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 11 0.33
32 16 0.48
33 6 0.18
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (31 bp):
TATTTAAATAATTGAAAAAATACTTTATTTA
Found at i:77763748 original size:16 final size:16
Alignment explanation
Indices: 77763727--77763784 Score: 89
Period size: 16 Copynumber: 3.6 Consensus size: 16
77763717 TTCGCTGTAT
*
77763727 TGGAATAAAGGCGTAA
1 TGGAATAGAGGCGTAA
77763743 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
* *
77763759 TGAAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
77763775 TGGAATAGAG
1 TGGAATAGAG
77763785 TTGTAATAGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.41, C:0.03, G:0.34, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:77763789 original size:16 final size:16
Alignment explanation
Indices: 77763722--77763791 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
77763712 TTTGGTTCGC
* *
77763722 TGTATTGGAATAAAGG
1 TGTAATGGAATAGAGG
*
77763738 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
* *
77763754 CGTAATGAAATAGAGG
1 TGTAATGGAATAGAGG
*
77763770 TGTAATGGAATAGAGT
1 TGTAATGGAATAGAGG
77763786 TGTAAT
1 TGTAAT
77763792 AGCAAATCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.39, C:0.03, G:0.31, T:0.27
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:77764231 original size:47 final size:46
Alignment explanation
Indices: 77764162--77764329 Score: 143
Period size: 47 Copynumber: 3.7 Consensus size: 46
77764152 TTAATTAAAA
*
77764162 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTTTCT
* *
77764209 TATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA--TT-T
1 TATATGAATTTATATAATTTAAAATAATTA-TAATA-ATA-AATTTTCT
* * * * *
77764255 AATATTAA--TATATAATTTCATAA-AATTCTTGATAATAAATTTTCT
1 TATATGAATTTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
*
77764300 TATATGAATTTATACAATTTAAAATAATTA
1 TATATGAATTTATATAATTTAAAATAATTA
77764330 ATATTAAATA
Statistics
Matches: 94, Mismatches: 15, Indels: 25
0.70 0.11 0.19
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 18 0.19
45 10 0.11
46 10 0.11
47 40 0.43
48 9 0.10
49 2 0.02
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTTTCT
Found at i:77764291 original size:91 final size:91
Alignment explanation
Indices: 77764196--77764403 Score: 335
Period size: 91 Copynumber: 2.3 Consensus size: 91
77764186 TAATTATAAC
* * * * *
77764196 TAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATATT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
77764261 AATATATAATTTCATAAAATTCTTGA
66 AATATATAATTTCATAAAATTCTTAA
77764287 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
77764352 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
77764378 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
77764404 CTAAAATCAA
Statistics
Matches: 108, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 88 0.81
92 20 0.19
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:77764363 original size:44 final size:43
Alignment explanation
Indices: 77764221--77764363 Score: 110
Period size: 44 Copynumber: 3.2 Consensus size: 43
77764211 TATGAATTTG
* * *
77764221 TATAATTTAAAATAATTATTATTACATATAATTTAATATTAATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
** * * * *
77764265 TATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATTTA
1 TATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATATA
*
77764312 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATA
77764356 TATAATTT
1 TATAATTT
77764364 CATAAAATTC
Statistics
Matches: 73, Mismatches: 17, Indels: 18
0.68 0.16 0.17
Matches are distributed among these distances:
43 3 0.04
44 32 0.44
45 7 0.10
46 7 0.10
47 22 0.30
48 2 0.03
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (43 bp):
TATAATTTAAAATAATTAATATTAAATATAATTTAATAATATA
Found at i:77764378 original size:47 final size:47
Alignment explanation
Indices: 77764246--77764384 Score: 128
Period size: 47 Copynumber: 3.0 Consensus size: 47
77764236 TTATTATTAC
* * *
77764246 ATATAATTTAATATTAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
77764293 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
77764337 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
77764384 A
1 A
77764385 ATGTTCTTAT
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
44 19 0.28
45 13 0.19
46 13 0.19
47 23 0.34
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:77766602 original size:12 final size:12
Alignment explanation
Indices: 77766585--77766611 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
77766575 AGCGACGAAA
77766585 CAATTGCTCAAC
1 CAATTGCTCAAC
77766597 CAATTGCTCAAC
1 CAATTGCTCAAC
77766609 CAA
1 CAA
77766612 AATTAGCAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.33, G:0.07, T:0.22
Consensus pattern (12 bp):
CAATTGCTCAAC
Found at i:77772859 original size:16 final size:16
Alignment explanation
Indices: 77772824--77772860 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
77772814 TGTTATTTCA
77772824 AAAATTGATTATCTTT
1 AAAATTGATTATCTTT
77772840 -AAATTGATTTAT-TTT
1 AAAATTGA-TTATCTTT
77772855 AAAATT
1 AAAATT
77772861 CCTCTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (16 bp):
AAAATTGATTATCTTT
Found at i:77772891 original size:21 final size:20
Alignment explanation
Indices: 77772867--77772905 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
77772857 AATTCCTCTT
77772867 TTATATATTATATTTAACTCA
1 TTATATATTAT-TTTAACTCA
*
77772888 TTATATGTTATTTTAACT
1 TTATATATTATTTTAACT
77772906 TGCTTTGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (20 bp):
TTATATATTATTTTAACTCA
Found at i:77772959 original size:27 final size:28
Alignment explanation
Indices: 77772920--77772978 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
77772910 TTGTAAAGGA
*
77772920 TTTATTTTAAGTTATTTTATATATT-AT
1 TTTATTTTAAGTTACTTTATATATTAAT
* *
77772947 TTTATTTTTAGTTGCTTTATATATTAAT
1 TTTATTTTAAGTTACTTTATATATTAAT
77772975 TTTA
1 TTTA
77772979 AAATTATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 22 0.79
28 6 0.21
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (28 bp):
TTTATTTTAAGTTACTTTATATATTAAT
Found at i:77773354 original size:18 final size:17
Alignment explanation
Indices: 77773327--77773370 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
77773317 GATTATTGCT
*
77773327 CTTATGTGTATTGTAATG
1 CTTATTTGTATTG-AATG
*
77773345 CTTATTTGTATTGATTG
1 CTTATTTGTATTGAATG
*
77773362 ATTATTTGT
1 CTTATTTGT
77773371 GTTCATTAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.20, C:0.05, G:0.18, T:0.57
Consensus pattern (17 bp):
CTTATTTGTATTGAATG
Found at i:77774849 original size:15 final size:15
Alignment explanation
Indices: 77774829--77774861 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
77774819 TGTGTTTTGT
77774829 TTTGATTGCATGGCA
1 TTTGATTGCATGGCA
*
77774844 TTTGATTGCATTGCA
1 TTTGATTGCATGGCA
77774859 TTT
1 TTT
77774862 TCATCATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTGATTGCATGGCA
Found at i:77783489 original size:52 final size:52
Alignment explanation
Indices: 77783427--77783530 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
77783417 GAAATGCAAG
*
77783427 ATCAGTTACAGATACAAATGAAGGAACAATTGGAAAAAATTCGGCAGGACAT
1 ATCAGTTACAGATACAAATGAAGGAACAATTGGAAAAAATTCAGCAGGACAT
77783479 ATCAGTTACAGATACAAATGAAGGAACAATTGGAAAAAATTCAGCAGGACAT
1 ATCAGTTACAGATACAAATGAAGGAACAATTGGAAAAAATTCAGCAGGACAT
77783531 GACAGAAAAG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.19
Consensus pattern (52 bp):
ATCAGTTACAGATACAAATGAAGGAACAATTGGAAAAAATTCAGCAGGACAT
Found at i:77791950 original size:44 final size:44
Alignment explanation
Indices: 77791898--77792253 Score: 164
Period size: 44 Copynumber: 7.6 Consensus size: 44
77791888 GAAATTACAG
77791898 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
* * ** ** ** *
77791942 ATCCTATCTCCCTAAGATTACAATGGAGTGGATT-AAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT--AGTA
* * * *
77791986 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGAATCAGATTGAAGCCAGAA
1 ATCTTATCTCCCTGAGA-TTAC---AGCG--GA--G---CAGATTGAAGCTAGTA
77792040 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
* ** * ** *
77792084 ATCCTATCTCCCTGAGATTACAGTAGAGCGGATT-AAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT--AGTA
* * * * *
77792128 ATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAA
1 ATCTTATCTCCCTGAGATTAC---AGCG--GA--G---CAGATTGAAGCTAGTA
* * *
77792182 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAACCAGTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
* * * *
77792226 ACCCTATCTCACTGAGATTACAGTGGAG
1 ATCTTATCTCCCTGAGATTACAGCGGAG
77792254 TGGATTAAAA
Statistics
Matches: 230, Mismatches: 52, Indels: 60
0.67 0.15 0.18
Matches are distributed among these distances:
43 7 0.03
44 143 0.62
45 4 0.02
47 6 0.03
49 8 0.03
51 7 0.03
53 4 0.02
54 46 0.20
55 5 0.02
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
Found at i:77792246 original size:98 final size:98
Alignment explanation
Indices: 77792068--77792254 Score: 232
Period size: 98 Copynumber: 1.9 Consensus size: 98
77792058 TACAGCGGAG
* * * * * * *
77792068 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAGGATCTT
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTAAAATAAAGAACCCT
*
77792133 ATCTCTCTGAAATTACAGTAGAGTAGATCGCAT
66 ATCTCACTGAAATTACAGTAGAGTAGATCGCAT
* * **
77792166 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAA-CCAGTAACCC
1 CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTAAAATAAAG-AACCC
* *
77792230 TATCTCACTGAGATTACAGTGGAGT
65 TATCTCACTGAAATTACAGTAGAGT
77792255 GGATTAAAAT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
97 2 0.03
98 72 0.97
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (98 bp):
CAGATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCAGAGCAGATTAAAATAAAGAACCCT
ATCTCACTGAAATTACAGTAGAGTAGATCGCAT
Found at i:77792304 original size:142 final size:142
Alignment explanation
Indices: 77791898--77792310 Score: 684
Period size: 142 Copynumber: 2.9 Consensus size: 142
77791888 GAAATTACAG
*
77791898 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
77791963 AATGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGAATCAGA
66 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
77792028 TTGAAGCCAGAA
131 TTGAAGCCAGAA
77792040 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* * *
77792105 AGTAGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAATTACAGTAGAGTAGATCGCATCAGA
66 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
77792170 TTGAAGCCAGAA
131 TTGAAGCCAGAA
* * * * *
77792182 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAACCAGTAACCCTATCTCACTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* * *
77792247 AGTGGAGTGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACCGTAGA-AAGGATCGCATCAG
66 AGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTA-GATCGCATCAG
77792311 GTCTTATCTC
Statistics
Matches: 253, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
141 1 0.00
142 252 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (142 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
TTGAAGCCAGAA
Found at i:77800509 original size:39 final size:39
Alignment explanation
Indices: 77800466--77800542 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
77800456 CAAAAGAAAT
77800466 TTAAACAAAAATTAACGTTAGCATTTTAATCGGTTAAAA
1 TTAAACAAAAATTAACGTTAGCATTTTAATCGGTTAAAA
77800505 TTAAACAAAAATTAACGTTAGCATTTTAATCGGTTAAA
1 TTAAACAAAAATTAACGTTAGCATTTTAATCGGTTAAA
77800543 GTATCTAGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.34
Consensus pattern (39 bp):
TTAAACAAAAATTAACGTTAGCATTTTAATCGGTTAAAA
Found at i:77806683 original size:47 final size:48
Alignment explanation
Indices: 77806585--77806683 Score: 155
Period size: 47 Copynumber: 2.1 Consensus size: 48
77806575 TCACATGAAG
* **
77806585 AAAAAAAGAACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTTCTTA
1 AAAAAAAGAACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAA
*
77806633 AAAAAAAG-ACCAATGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAA
1 AAAAAAAGAACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAA
77806680 AAAA
1 AAAA
77806684 TAAAAATAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
47 39 0.83
48 8 0.17
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.14
Consensus pattern (48 bp):
AAAAAAAGAACCAAGGTGAAAACCCGCAAAGGGCACTTTGAGTCCAAA
Found at i:77808357 original size:45 final size:44
Alignment explanation
Indices: 77808295--77808524 Score: 166
Period size: 45 Copynumber: 5.2 Consensus size: 44
77808285 CCTAAATTTA
*
77808295 CAGCGGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTG
1 CAGCGAAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * * *
77808339 CCAGCGAAGCT-GATTGAAGACA-CA-AGTCTTGCCTCCCTG-AGTTTG
1 -CAGCGAAG-TAGACTGAAGATAGCAGA-TCTTGTCTTCCTGTA--TTG
* * * *
77808384 CAGCGGAGTAGACTAAAGATAGCAGATCTTATCTTTCTGTATTG
1 CAGCGAAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTG
* * ** * *
77808428 CCAGCGAAGTAGATTGAAGACATAAG-TCTTGCCTCCCTG-AGTTTG
1 -CAGCGAAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTA--TTG
* * * *
77808473 CAGCGGAGCAGACTGAAGATAACAGATCTTGTTTTCCTGTATTGG
1 CAGCGAAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATT-G
77808518 CAGCGAA
1 CAGCGAA
77808525 ACAGATCGAA
Statistics
Matches: 138, Mismatches: 33, Indels: 28
0.69 0.17 0.14
Matches are distributed among these distances:
43 4 0.03
44 61 0.44
45 69 0.50
46 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (44 bp):
CAGCGAAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTG
Found at i:77808571 original size:89 final size:89
Alignment explanation
Indices: 77808033--77808580 Score: 586
Period size: 89 Copynumber: 6.2 Consensus size: 89
77808023 AAGCTACAAT
** * * * * *
77808033 GGAGCAGACTGAAGATAGTAGATCTTGTCTTCCTATAATGGCAGCAAAGCAGATTGAAGACACCA
1 GGAGCAGACTGAAGATAACAGATCTTGTTTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCA
77808098 GTCTTGCCTCCCTGAGTTTGCAGC
66 GTCTTGCCTCCCTGAGTTTGCAGC
* * * * *
77808122 GGAGTAGATTGAAGATAACATATCTTGGTTTT-CTGTATTGGCAGTGAAGTAGATCGAAGACACC
1 GGAGCAGACTGAAGATAACAGATCTT-GTTTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACC
* **
77808186 AG-CTTTGCCTCCCTGAGTTTGTAAT
65 AGTC-TTGCCTCCCTGAGTTTGCAGC
* * * * ** * *
77808211 AGAACAGACT-AAAAAAACAGATCTTGTTTTCCTGTATTGGCAGCGAATTAGATCGAAGATACTA
1 GGAGCAGACTGAAGATAACAGATCTTGTTTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCA
* * * *
77808275 G-CTTTGCCACCCTAAATTTACAGC
66 GTC-TTGCCTCCCTGAGTTTGCAGC
* * * * * * *
77808299 GGAGTAGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGCCAGCGAAGCTGATTGAAGACACAA
1 GGAGCAGACTGAAGATAACAGATCTTGTTTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCA
77808364 GTCTTGCCTCCCTGAGTTTGCAGC
66 GTCTTGCCTCCCTGAGTTTGCAGC
* * * * * * * **
77808388 GGAGTAGACTAAAGATAGCAGATCTTATCTTT-CTGTATTGCCAGCGAAGTAGATTGAAGACATA
1 GGAGCAGACTGAAGATAACAGATCTTGT-TTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACC
77808452 AGTCTTGCCTCCCTGAGTTTGCAGC
65 AGTCTTGCCTCCCTGAGTTTGCAGC
*
77808477 GGAGCAGACTGAAGATAACAGATCTTGTTTTCCTGTATTGGCAGCGAAACAGATCGAAGACACCA
1 GGAGCAGACTGAAGATAACAGATCTTGTTTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCA
*
77808542 G-CTTTGCCTCCCTGAGTTTGCAAC
66 GTC-TTGCCTCCCTGAGTTTGCAGC
* *
77808566 AGAGCAGACTAAAGA
1 GGAGCAGACTGAAGA
77808581 GAGCAAATGT
Statistics
Matches: 381, Mismatches: 70, Indels: 16
0.82 0.15 0.03
Matches are distributed among these distances:
87 5 0.01
88 70 0.18
89 299 0.78
90 7 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (89 bp):
GGAGCAGACTGAAGATAACAGATCTTGTTTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCA
GTCTTGCCTCCCTGAGTTTGCAGC
Found at i:77810263 original size:20 final size:21
Alignment explanation
Indices: 77810226--77810264 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
77810216 AATTCCTCTT
77810226 TTATATATTATGTTTAACTCA
1 TTATATATTATGTTTAACTCA
*
77810247 TTATATGTTAT-TTTAACT
1 TTATATATTATGTTTAACT
77810265 TGCTTTGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (21 bp):
TTATATATTATGTTTAACTCA
Found at i:77810318 original size:27 final size:28
Alignment explanation
Indices: 77810279--77810337 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
77810269 TTGTAAAGGA
*
77810279 TTTATTTTAAGTTATTTTATATATT-AT
1 TTTATTTTAAGTTACTTTATATATTAAT
* *
77810306 TTTATTTTTAGTTGCTTTATATATTAAT
1 TTTATTTTAAGTTACTTTATATATTAAT
77810334 TTTA
1 TTTA
77810338 AAATTATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 22 0.79
28 6 0.21
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (28 bp):
TTTATTTTAAGTTACTTTATATATTAAT
Found at i:77810711 original size:18 final size:17
Alignment explanation
Indices: 77810684--77810727 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
77810674 GATTATTGCT
*
77810684 CTTATGTGTATTGTAATG
1 CTTATTTGTATTG-AATG
*
77810702 CTTATTTGTATTGATTG
1 CTTATTTGTATTGAATG
*
77810719 ATTATTTGT
1 CTTATTTGT
77810728 GTTCATTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.20, C:0.05, G:0.18, T:0.57
Consensus pattern (17 bp):
CTTATTTGTATTGAATG
Found at i:77815236 original size:31 final size:33
Alignment explanation
Indices: 77815186--77815273 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 33
77815176 ATTTAATGTA
* * * *
77815186 TATTATTATAATTTTAAAATAAAATC-A-TATT
1 TATTATTTTAATATAAAAATAAAATCAACTATC
*
77815217 TATTATTTTAATATAAAAATAGAATCAACTATC
1 TATTATTTTAATATAAAAATAAAATCAACTATC
* * *
77815250 TGTAATTTTGATATAAAAATAAAA
1 TATTATTTTAATATAAAAATAAAA
77815274 GAGGGTTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
31 22 0.48
32 1 0.02
33 23 0.50
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (33 bp):
TATTATTTTAATATAAAAATAAAATCAACTATC
Found at i:77815659 original size:26 final size:24
Alignment explanation
Indices: 77815617--77815667 Score: 57
Period size: 26 Copynumber: 2.0 Consensus size: 24
77815607 TTAATAAAAA
* *
77815617 TTTAAATATTTATATTTAATACATT
1 TTTAAATATCTAAATTTAAT-CATT
*
77815642 TTTAATATATCTAAATTTCATCATT
1 TTTAA-ATATCTAAATTTAATCATT
77815667 T
1 T
77815668 ATTTTAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (24 bp):
TTTAAATATCTAAATTTAATCATT
Found at i:77818061 original size:21 final size:21
Alignment explanation
Indices: 77818035--77818076 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
77818025 CCTTATGTTA
77818035 AAGTTATGAAAGATTAAGTTG
1 AAGTTATGAAAGATTAAGTTG
77818056 AAGTTATGAAAGATTAAGTTG
1 AAGTTATGAAAGATTAAGTTG
77818077 GAATAAGTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.33
Consensus pattern (21 bp):
AAGTTATGAAAGATTAAGTTG
Found at i:77820103 original size:20 final size:19
Alignment explanation
Indices: 77820046--77820087 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
77820036 ACTTCAGTGT
*
77820046 CCCTGTTGGCCTACGGTGC
1 CCCTGTTCGCCTACGGTGC
77820065 CCCTGTTCGCCTACGGTGC
1 CCCTGTTCGCCTACGGTGC
77820084 CCCT
1 CCCT
77820088 TTCTGCACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.05, C:0.43, G:0.26, T:0.26
Consensus pattern (19 bp):
CCCTGTTCGCCTACGGTGC
Found at i:77823444 original size:27 final size:27
Alignment explanation
Indices: 77823375--77823447 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 27
77823365 AACACTTCAG
* *
77823375 GAAAGAAAAGCCTTTATAGAAAAACAT
1 GAAAGAAAAGCCTTTGTGGAAAAACAT
* *
77823402 GAAAGAAAAGCCTTTGTGGTAAAATAT
1 GAAAGAAAAGCCTTTGTGGAAAAACAT
*
77823429 GAAAGAAAATCCTTTGTGG
1 GAAAGAAAAGCCTTTGTGG
77823448 CGAATAATGA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.47, C:0.10, G:0.21, T:0.23
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTGTGGAAAAACAT
Found at i:77825546 original size:18 final size:17
Alignment explanation
Indices: 77825513--77825551 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
77825503 TTGTATAAAT
77825513 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
77825531 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
77825548 TGTG
1 TGTG
77825552 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:77825804 original size:23 final size:23
Alignment explanation
Indices: 77825777--77825874 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
77825767 AGTGTTATTG
77825777 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
77825800 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
77825823 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
77825845 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
77825868 ATCAGTG
1 ATCAGTG
77825875 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:77825843 original size:45 final size:45
Alignment explanation
Indices: 77825779--77825867 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
77825769 TGTTATTGAT
* *
77825779 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
77825824 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
77825868 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:77832915 original size:18 final size:17
Alignment explanation
Indices: 77832882--77832920 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
77832872 TTGTATAAAT
77832882 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
77832900 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
77832917 TGTG
1 TGTG
77832921 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:77833173 original size:23 final size:23
Alignment explanation
Indices: 77833147--77833220 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
77833137 GTGTTATTGA
77833147 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
77833170 TCAGTGGTAGCTTTGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
* *
77833192 CCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
77833215 TCAGTG
1 TCAGTG
77833221 TGGCACTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
22 20 0.44
23 25 0.56
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:77833199 original size:22 final size:22
Alignment explanation
Indices: 77833148--77833213 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
77833138 TGTTATTGAT
*
77833148 CAGTGGTAGCTTCGGCTACATTT
1 CAGTGGTAGCTTCGGCTACA-TC
*
77833171 CAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATC
77833193 CAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACAT
77833214 ATCAGTGTGG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 21 0.52
23 19 0.47
ACGTcount: A:0.18, C:0.23, G:0.27, T:0.32
Consensus pattern (22 bp):
CAGTGGTAGCTTCGGCTACATC
Found at i:77839779 original size:115 final size:115
Alignment explanation
Indices: 77839577--77839922 Score: 656
Period size: 115 Copynumber: 3.0 Consensus size: 115
77839567 GAAAATACCC
*
77839577 ATACAAAAGTGATGAATGATTATGTTTTAACTAACCCTAACTCAAATTTGTTTAATGGTGTTTCT
1 ATACAAAAGTGAGGAATGATTATGTTTTAACTAACCCTAACTCAAATTTGTTTAATGGTGTTTCT
77839642 TTGTTACAAGATTTAAATATCAATTGACAAACCCTCAATTATATTACTTT
66 TTGTTACAAGATTTAAATATCAATTGACAAACCCTCAATTATATTACTTT
77839692 ATACAAAAGTGAGGAATGATTATGTTTTAACTAACCCTAACTCAAATTTGTTTAATGGTGTTTCT
1 ATACAAAAGTGAGGAATGATTATGTTTTAACTAACCCTAACTCAAATTTGTTTAATGGTGTTTCT
77839757 TTGTTACAAGATTTAAATATCAATTGACAAACCCTCAATTATATTACTTT
66 TTGTTACAAGATTTAAATATCAATTGACAAACCCTCAATTATATTACTTT
77839807 ATACAAAAGTGAGGAATGATTATGTTTTAACTAACCCTAACTCAAATTTGTTTAATGGTGTTTCT
1 ATACAAAAGTGAGGAATGATTATGTTTTAACTAACCCTAACTCAAATTTGTTTAATGGTGTTTCT
* * *
77839872 TTGTTACAAGATTTAAAGATCAATTGACGAACCTTCAATTATATTACTTT
66 TTGTTACAAGATTTAAATATCAATTGACAAACCCTCAATTATATTACTTT
77839922 A
1 A
77839923 CCATCAATAG
Statistics
Matches: 227, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
115 227 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (115 bp):
ATACAAAAGTGAGGAATGATTATGTTTTAACTAACCCTAACTCAAATTTGTTTAATGGTGTTTCT
TTGTTACAAGATTTAAATATCAATTGACAAACCCTCAATTATATTACTTT
Found at i:77842530 original size:14 final size:15
Alignment explanation
Indices: 77842511--77842544 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
77842501 GACCATTCTT
77842511 AATTTC-ACTAACCC
1 AATTTCTACTAACCC
*
77842525 AATTTCTTCTAACCC
1 AATTTCTACTAACCC
77842540 AATTT
1 AATTT
77842545 TTGGGATGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.38
Consensus pattern (15 bp):
AATTTCTACTAACCC
Found at i:77845995 original size:45 final size:45
Alignment explanation
Indices: 77845946--77846099 Score: 139
Period size: 45 Copynumber: 3.4 Consensus size: 45
77845936 CTCCATGGCT
77845946 TCTTTCAGCCATGGTCTTACTCATTTTAGTCATGATGCCATAACA
1 TCTTTCAGCCATGGTCTTACTCATTTTAGTCATGATGCCATAACA
* * ** * * * * * *
77845991 TCTTTTAGCTATGGAATTAGTCCTATCTACT-ATGATGCCATGACG
1 TCTTTCAGCCATGGTCTTACTCAT-TTTAGTCATGATGCCATAACA
* * * * *
77846036 TATTTCAACCATAGTCTTTACTCATTTTAGTCATGATGTCATATCA
1 TCTTTCAGCCATGGTC-TTACTCATTTTAGTCATGATGCCATAACA
*
77846082 TCTTTCAGCTATGGTCTT
1 TCTTTCAGCCATGGTCTT
77846100 TCAGCTATGG
Statistics
Matches: 77, Mismatches: 29, Indels: 6
0.69 0.26 0.05
Matches are distributed among these distances:
45 45 0.58
46 32 0.42
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (45 bp):
TCTTTCAGCCATGGTCTTACTCATTTTAGTCATGATGCCATAACA
Found at i:77846011 original size:90 final size:91
Alignment explanation
Indices: 77845889--77846095 Score: 256
Period size: 90 Copynumber: 2.3 Consensus size: 91
77845879 GGACTACTAG
* * * ** * * * *
77845889 GATGCCATAGCGTCTTTCAACTATGGTTTTAGTCCTGTCTACCATGACT-CCATGGCTTCTTTCA
1 GATGCCATAACATCTTTCAGCTATGGAATTAGTCCTATCTACCATGA-TGCCATGACGTATTTCA
* *
77845953 GCCATGGTC-TTACTCATTTTAGTCAT
65 ACCATAGTCTTTACTCATTTTAGTCAT
* *
77845979 GATGCCATAACATCTTTTAGCTATGGAATTAGTCCTATCTACTATGATGCCATGACGTATTTCAA
1 GATGCCATAACATCTTTCAGCTATGGAATTAGTCCTATCTACCATGATGCCATGACGTATTTCAA
77846044 CCATAGTCTTTACTCATTTTAGTCAT
66 CCATAGTCTTTACTCATTTTAGTCAT
* *
77846070 GATGTCATATCATCTTTCAGCTATGG
1 GATGCCATAACATCTTTCAGCTATGG
77846096 TCTTTCAGCT
Statistics
Matches: 99, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
89 1 0.01
90 58 0.59
91 40 0.40
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (91 bp):
GATGCCATAACATCTTTCAGCTATGGAATTAGTCCTATCTACCATGATGCCATGACGTATTTCAA
CCATAGTCTTTACTCATTTTAGTCAT
Found at i:77846101 original size:14 final size:14
Alignment explanation
Indices: 77846082--77846113 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
77846072 TGTCATATCA
77846082 TCTTTCAGCTATGG
1 TCTTTCAGCTATGG
77846096 TCTTTCAGCTATGG
1 TCTTTCAGCTATGG
77846110 TCTT
1 TCTT
77846114 ACTCATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.12, C:0.22, G:0.19, T:0.47
Consensus pattern (14 bp):
TCTTTCAGCTATGG
Found at i:77850399 original size:48 final size:48
Alignment explanation
Indices: 77850346--77850742 Score: 785
Period size: 48 Copynumber: 8.3 Consensus size: 48
77850336 TAAAAATTAC
*
77850346 ATCAATAATTAAAATAACGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
77850394 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
77850442 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
77850490 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
77850538 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
77850586 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
77850634 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
77850682 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
1 ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
77850730 ATCAATAATTAAA
1 ATCAATAATTAAA
77850743 TTTAAAATGT
Statistics
Matches: 348, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 348 1.00
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.35
Consensus pattern (48 bp):
ATCAATAATTAAAATAAGGACTTTAATATTTTATTAAAATAAGGACTA
Found at i:77861066 original size:44 final size:44
Alignment explanation
Indices: 77861018--77861199 Score: 113
Period size: 44 Copynumber: 4.2 Consensus size: 44
77861008 ACTACTGCTT
* *
77861018 AGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTGTCCACC
1 AGGGAGACAAGATCTGAAATCTTCAATCTACTCCACTGTCCACC
* * *** *
77861062 AGGGAGA-TAGA-CTTACGGCTTCAATGTACTCCACTGTAACCA-C
1 AGGGAGACAAGATCTGAAATCTTCAATCTACTCCACTGT--CCACC
** * ** * * * * *
77861105 AGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTAATGC-CT
1 AGGGAGACAAGATCTGAAATCTTCAATCTACTCCACT-GTCCACC
* *
77861149 AGGGAGACAAGATCTGAAATCTTTAATCTATTCCACTG-CCAACC
1 AGGGAGACAAGATCTGAAATCTTCAATCTACTCCACTGTCC-ACC
77861193 AGGGAGA
1 AGGGAGA
77861200 TAGCATTACA
Statistics
Matches: 97, Mismatches: 33, Indels: 16
0.66 0.23 0.11
Matches are distributed among these distances:
42 20 0.21
43 10 0.10
44 49 0.51
45 17 0.18
46 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.25
Consensus pattern (44 bp):
AGGGAGACAAGATCTGAAATCTTCAATCTACTCCACTGTCCACC
Found at i:77861987 original size:132 final size:131
Alignment explanation
Indices: 77860578--77861967 Score: 2046
Period size: 131 Copynumber: 10.6 Consensus size: 131
77860568 NNNNNNNNNN
* * * ** *
77860578 CACAGGGAGGTAAAA-TCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGACAAGATCTGA
1 CACAGGGAGGTAAAATTC-ACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGA
* *
77860642 AATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGCATTACGACTTCAATGTACTCCACTGTA
65 AATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGTA
77860707 AC
130 AC
77860709 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
1 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
* *
77860774 ATCTTCAATCTATTCCACTGCCCACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGTAA
66 ATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGTAA
*
77860839 G
131 C
* * * * ** *
77860840 CACAGGGAGGTAAAA-TCTGCCATCTTCGATTTGCTCCACTAATGCCTAGGGAGACAAGATCTGA
1 CACAGGGAGGTAAAATTC-ACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGA
* ** *
77860904 AATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGCATTACAACCTCAATGTACTCCACTGTA
65 AATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGTA
77860969 AC
130 AC
*
77860971 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
1 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
*
77861036 ATCTTTAATCTATTCCACTGTCC-ACCAGGGAGATAGACTTACGGCTTCAATGTACTCCACTGTA
66 ATCTTTAATCTATTCCACTG-CCAACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGTA
77861100 AC
130 AC
* * * ** *
77861102 CACAGGGAGGTAAAA-TCTGCCATCTTCGATCTGCTCCACTAATGCCTAGGGAGACAAGATCTGA
1 CACAGGGAGGTAAAATTC-ACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGA
* **
77861166 AATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGCATTACAACTTCAATGTACTCCACTGTA
65 AATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGTA
77861231 AC
130 AC
*
77861233 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACTGCTTAGGGAGACAAGATCTGAA
1 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
* **
77861298 ATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGCATTACAACTTCAATGTACTCCACTGTAA
66 ATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGTAA
77861363 C
131 C
77861364 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
1 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
** *
77861429 ATCTTTAATCTATTCCACTG-CTGCCTA-GGAAAGTAGAATTACTGGCTTCAATGTACTCCACTG
66 ATCTTTAATCTATTCCACTGCCAACC-AGGGAGA-TAGAATTAC-GGCTTCAATGTACTCCACTG
77861492 TAAC
128 TAAC
*
77861496 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCTCTACCGCTTAGGGAGACAAGATCTGAA
1 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
** *
77861561 ATCTTTAATCTATTCCACTG-CTGCCTA-GGAAAGTAGAATTACTGGCTTCAATGTACTCCACTG
66 ATCTTTAATCTATTCCACTGCCAACC-AGGGAGA-TAGAATTAC-GGCTTCAATGTACTCCACTG
77861624 TAAC
128 TAAC
*
77861628 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCTCTACCGCTTAGGGAGACAAGATCTGAA
1 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
** *
77861693 ATCTTTAATCTATTCCACTG-CTGCCTA-GGAAAGTAGAATTACTGGCTTCAATGTACTCCACTG
66 ATCTTTAATCTATTCCACTGCCAACC-AGGGAGA-TAGAATTAC-GGCTTCAATGTACTCCACTG
77861756 TAAC
128 TAAC
*
77861760 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCTCTACCGCTTAGGGAGACAAGATCTGAA
1 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
*** *
77861825 ATCTTTAATCTATTCCACTGCTGCCCAGGGA-AGTAGAATTACTGGCTTCAATGTACTCCACTAT
66 ATCTTTAATCTATTCCACTGCCAACCAGGGAGA-TAGAATTAC-GGCTTCAATGTACTCCACTGT
77861889 AAC
129 AAC
* * * *
77861892 CATAGGGAGGTAAAATCCGCCATCTTTGATCTGCTCCACTACCGCTTAGGGAGACAAGATCTGAA
1 CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
*
77861957 ATCTTCAATCT
66 ATCTTTAATCT
77861968 GCTCTATTGC
Statistics
Matches: 1179, Mismatches: 68, Indels: 23
0.93 0.05 0.02
Matches are distributed among these distances:
130 13 0.01
131 677 0.57
132 484 0.41
133 5 0.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (131 bp):
CACAGGGAGGTAAAATTCACCATCTTTGATCTGCCCCACTACCGCTTAGGGAGACAAGATCTGAA
ATCTTTAATCTATTCCACTGCCAACCAGGGAGATAGAATTACGGCTTCAATGTACTCCACTGTAA
C
Found at i:77863270 original size:13 final size:14
Alignment explanation
Indices: 77863242--77863274 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
77863232 TTAGCCTCTC
*
77863242 CATTTTTACTTCTT
1 CATTTTCACTTCTT
77863256 CATTTTCACTT-TT
1 CATTTTCACTTCTT
77863269 CATTTT
1 CATTTT
77863275 TTCCGTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (14 bp):
CATTTTCACTTCTT
Found at i:77866891 original size:18 final size:18
Alignment explanation
Indices: 77866868--77866914 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
77866858 TTACTATTAA
77866868 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAAAT
*
77866886 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAAAT
77866904 AT-TAATATTAA
1 ATATAAT-TTAA
77866915 ATATTCTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATATAATTTAATAAAAAT
Found at i:77870838 original size:77 final size:78
Alignment explanation
Indices: 77870703--77870858 Score: 305
Period size: 77 Copynumber: 2.0 Consensus size: 78
77870693 CCACCGATCC
77870703 TTTATTAAGGTGTGATCGGCTAACCAAAAAAAAACAATTCTGGTCTGCAAAATTTGAGAAAACAG
1 TTTATTAAGGTGTGATCGGCTAACCAAAAAAAAACAATTCTGGTCTGCAAAATTTGAGAAAACAG
77870768 GTTCGGGAGTCAT
66 GTTCGGGAGTCAT
77870781 TTTATTAAGGTGTGATCGGCTAACC-AAAAAAAACAATTCTGGTCTGCAAAATTTGAGAAAACAG
1 TTTATTAAGGTGTGATCGGCTAACCAAAAAAAAACAATTCTGGTCTGCAAAATTTGAGAAAACAG
77870845 GTTCGGGAGTCAT
66 GTTCGGGAGTCAT
77870858 T
1 T
77870859 ACGCACGAGG
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
77 53 0.68
78 25 0.32
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (78 bp):
TTTATTAAGGTGTGATCGGCTAACCAAAAAAAAACAATTCTGGTCTGCAAAATTTGAGAAAACAG
GTTCGGGAGTCAT
Found at i:77872781 original size:14 final size:15
Alignment explanation
Indices: 77872762--77872794 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
77872752 CTTTATTCTT
*
77872762 AAAATTCAAAAA-TA
1 AAAATTAAAAAACTA
77872776 AAAATTAAAAAACTA
1 AAAATTAAAAAACTA
77872791 AAAA
1 AAAA
77872795 ATTTAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATTAAAAAACTA
Found at i:77873956 original size:58 final size:58
Alignment explanation
Indices: 77873833--77873971 Score: 181
Period size: 59 Copynumber: 2.4 Consensus size: 58
77873823 AAAGTTGCTA
* *
77873833 TGTTTTGGCACTAAAAGCAACCGCAAGCCACAACTACCAGCATGTCAAGAATTAAATT
1 TGTTTTGGCACTAAAAGAAACCACAAGCCACAACTACCAGCATGTCAAGAATTAAATT
* * *
77873891 TGTTTTGGCACTAAAAGTAAACCACAAGTCACAA-TAACCAGCATGTCAAGGATTGAATT
1 TGTTTTGGCACTAAAAG-AAACCACAAGCCACAACT-ACCAGCATGTCAAGAATTAAATT
* * *
77873950 TGTTTGGGTACTAAAAGCAACC
1 TGTTTTGGCACTAAAAGAAACC
77873972 GCAACCGTAA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
58 22 0.31
59 49 0.69
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (58 bp):
TGTTTTGGCACTAAAAGAAACCACAAGCCACAACTACCAGCATGTCAAGAATTAAATT
Found at i:77878432 original size:8 final size:10
Alignment explanation
Indices: 77878406--77878431 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
77878396 GTTCCACAAA
77878406 AAATATATTT
1 AAATATATTT
77878416 AAATATATTT
1 AAATATATTT
77878426 AAATAT
1 AAATAT
77878432 TGGTTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AAATATATTT
Found at i:77880842 original size:8 final size:10
Alignment explanation
Indices: 77880816--77880841 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
77880806 GTTCCACAAA
77880816 AAATATATTT
1 AAATATATTT
77880826 AAATATATTT
1 AAATATATTT
77880836 AAATAT
1 AAATAT
77880842 TGGTTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AAATATATTT
Found at i:77884928 original size:14 final size:14
Alignment explanation
Indices: 77884909--77884935 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
77884899 TGTCTGGGGC
77884909 CCAAAACCCAAACA
1 CCAAAACCCAAACA
77884923 CCAAAACCCAAAC
1 CCAAAACCCAAAC
77884936 CAACCCAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (14 bp):
CCAAAACCCAAACA
Found at i:77887409 original size:32 final size:32
Alignment explanation
Indices: 77887373--77887435 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
77887363 GTTTTCAGAC
77887373 AGCTCATTTTTGAGGAGGTGAAAAATCATGCA
1 AGCTCATTTTTGAGGAGGTGAAAAATCATGCA
77887405 AGCTCATTTTTGAGGAGGTGAAAAATCATGC
1 AGCTCATTTTTGAGGAGGTGAAAAATCATGC
77887436 CTAACTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (32 bp):
AGCTCATTTTTGAGGAGGTGAAAAATCATGCA
Found at i:77889537 original size:24 final size:24
Alignment explanation
Indices: 77889510--77889560 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
77889500 ATATTTTACA
*
77889510 TTTTAAATCATTTTATATT-TTTAT
1 TTTTAAATCACTTTAT-TTATTTAT
* *
77889534 TTTTACATTACTTTATTTATTTAT
1 TTTTAAATCACTTTATTTATTTAT
77889558 TTT
1 TTT
77889561 AAACTTTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTAAATCACTTTATTTATTTAT
Found at i:77889949 original size:114 final size:113
Alignment explanation
Indices: 77889749--77889980 Score: 338
Period size: 114 Copynumber: 2.0 Consensus size: 113
77889739 TAGAAAACGC
* * *
77889749 CGTTTTCAATAAAGCGCCGCTAATGCTGAGGAATTTAGCGGCATTTTTGTGAAAGCACCACAGAA
1 CGTTTCCAATAAAGCGCCGCTAATGCTGAGGAATTTAGCGGCATTTTTATGAAAGCACCACAAAA
* *
77889814 GAACTAAGCACAACGACGCCGTTTACTGAGCTTTCGGGAGGTTTAGCGG
66 AAACTAAACACAACGACGCCGTTTACTGAGCTTTCGGG-GGTTTAGCGG
* * ** * *
77889863 CGTTTCCAATAATGCGCCGCTAATGGTGAGGGCTTTAGCGGCATTTTTATGAAAGCGCCGCAAAA
1 CGTTTCCAATAAAGCGCCGCTAATGCTGAGGAATTTAGCGGCATTTTTATGAAAGCACCACAAAA
* *
77889928 AAATTAAACCCAACGACGCCGTTTACTGAGCTTTCGGGGGTTTAGCGG
66 AAACTAAACACAACGACGCCGTTTACTGAGCTTTCGGGGGTTTAGCGG
77889976 CGTTT
1 CGTTT
77889981 TTGATCAAAC
Statistics
Matches: 105, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
113 15 0.14
114 90 0.86
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (113 bp):
CGTTTCCAATAAAGCGCCGCTAATGCTGAGGAATTTAGCGGCATTTTTATGAAAGCACCACAAAA
AAACTAAACACAACGACGCCGTTTACTGAGCTTTCGGGGGTTTAGCGG
Found at i:77890296 original size:115 final size:113
Alignment explanation
Indices: 77889963--77890411 Score: 518
Period size: 114 Copynumber: 4.0 Consensus size: 113
77889953 CTGAGCTTTC
* * *
77889963 GGGGGTTTAGCGGCGTTTTTGATCAAA-CGCCGCAAAAAAAATTAAGCCCAACGACG-C--TTTC
1 GGGGCTTTAGCGGCGTTTTT-ATGAAAGCGCCGCAAAAAAAATTAAACCCAACGACGCCGTTTTC
***** * * * * *
77890024 -G-GGGGGGGGGGGTTCAGCAGCATTTTCAATAATGCACCGCTAATGTT
65 TGAGCTTTCGGGGGTTTAGCAGCGTTTTCAATAAAGCGCCGCTAATGCT
* *
77890071 GGGGCTTTAGCGGCGTTTTTATGAAAGCGCCGCAAAAAAAAATTAAACCCAACGATGCCATTTTC
1 GGGGCTTTAGCGGCGTTTTTATGAAAGCGCCGC-AAAAAAAATTAAACCCAACGACGCCGTTTTC
* * *
77890136 TTAGCTTTCGGGGGTTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCT
65 TGAGCTTTCGGGGGTTTAGCAGCGTTTTCAATAAAGCGCCGCTAATGCT
* * * * * * *
77890185 GAGGCTTTAACGGCATTTTTGAT-CAAGCGCCACAAAAAAAACTAAGCCCAACGACGCCGTTTTC
1 GGGGCTTTAGCGGCGTTTTT-ATGAAAGCGCCGCAAAAAAAATTAAACCCAACGACGCCGTTTTC
* *
77890249 TGAGCTTTCGGGGGGGTTTAGCGGCGTTTTCAATAATGCGCCGCTAATGCT
65 TGAGCTTTC--GGGGGTTTAGCAGCGTTTTCAATAAAGCGCCGCTAATGCT
77890300 GGGGCTTTAGCGGCGTTTTTATGAAAGCGCCGC-AAAAAAATTAAACCCAACGACGCCGTTTTCT
1 GGGGCTTTAGCGGCGTTTTTATGAAAGCGCCGCAAAAAAAATTAAACCCAACGACGCCGTTTTCT
* * * *
77890364 GAGCTTTCGGGGGTTTTGCAGTGTTTTTAATAAAGGGCCGCTAATGCT
66 GAGCTTTCGGGGGTTTAGCAGCGTTTTCAATAAAGCGCCGCTAATGCT
77890412 TAGGGATTTA
Statistics
Matches: 288, Mismatches: 42, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
107 5 0.02
108 25 0.09
109 21 0.07
110 1 0.00
112 38 0.13
113 35 0.12
114 98 0.34
115 65 0.23
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (113 bp):
GGGGCTTTAGCGGCGTTTTTATGAAAGCGCCGCAAAAAAAATTAAACCCAACGACGCCGTTTTCT
GAGCTTTCGGGGGTTTAGCAGCGTTTTCAATAAAGCGCCGCTAATGCT
Found at i:77890907 original size:26 final size:26
Alignment explanation
Indices: 77890876--77890963 Score: 108
Period size: 26 Copynumber: 3.3 Consensus size: 26
77890866 ATATTATATG
77890876 TTATTTTAACTTGCTTTGTAAATTAT
1 TTATTTTAACTTGCTTTGTAAATTAT
*
77890902 TTATTTTAACTTGCTTTGTATATTATT
1 TTATTTTAACTTGCTTTGTAAATTA-T
* *
77890929 TTATTTTAAGTT--TTTGTATATATTAA
1 TTATTTTAACTTGCTTTGTA-A-ATTAT
77890955 TTATTTTAA
1 TTATTTTAA
77890964 AATTATCCTA
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
25 6 0.11
26 33 0.60
27 16 0.29
ACGTcount: A:0.27, C:0.05, G:0.07, T:0.61
Consensus pattern (26 bp):
TTATTTTAACTTGCTTTGTAAATTAT
Found at i:77894374 original size:114 final size:114
Alignment explanation
Indices: 77894057--77894463 Score: 489
Period size: 114 Copynumber: 3.6 Consensus size: 114
77894047 GAAAATGCCA
* ** * * *
77894057 CAAAAAAACCTAAGACCAACGACGCCATTTTTTGAGTTTTTGGGGATTTAGCGGCGTTTTTAAGA
1 CAAAAAAACCTAAGCCCAACGACGCCATTTACTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGT
* * * **
77894122 AAGCGCCGCTAATGCTCAGGGCTTTAGCGGCG-TTTTCGGTAAAGTGCAA
66 AAGCGCCGCTAATGCTCAGGGCTTTAGTGGCGATTTT-GGGAAAGCGCCG
* * * *
77894171 CAAAAGAACCTAAGCCAAACGACGCCGTTTACTGAGC-TTCGGGGCTTTAGCGGCGTTTTTAAGT
1 CAAAAAAACCTAAGCCCAACGACGCCATTTACTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGT
* * *
77894235 AAGCGCCGTTAATGCTCCGGGCTTTAGTGGCGATTCTGGGAAAGCGCCG
66 AAGCGCCGCTAATGCTCAGGGCTTTAGTGGCGATTTTGGGAAAGCGCCG
* * * * *
77894284 CAAAAAAACCTAAGCCCAACGACACCGTTTACTGAGCTTTCGGGGCTTTAGTGGCATTTTTAAGT
1 CAAAAAAACCTAAGCCCAACGACGCCATTTACTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGT
*
77894349 AAGCGCCGCTAATGCTTAGGGCTTTAGTGGC-ATTTTTGGGAAAGCGCCG
66 AAGCGCCGCTAATGCTCAGGGCTTTAGTGGCGA-TTTTGGGAAAGCGCCG
*** * * * *
77894398 CAAAGGGACCTAAGCCCAACGACGCCATTTTCTTAGCTTTTGGGGATTTAGTGGCGTTTTT-AGT
1 CAAAAAAACCTAAGCCCAACGACGCCATTTACTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGT
77894462 AA
66 AA
77894464 ANTATCACTG
Statistics
Matches: 253, Mismatches: 37, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
113 101 0.40
114 152 0.60
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (114 bp):
CAAAAAAACCTAAGCCCAACGACGCCATTTACTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGT
AAGCGCCGCTAATGCTCAGGGCTTTAGTGGCGATTTTGGGAAAGCGCCG
Found at i:77894792 original size:15 final size:14
Alignment explanation
Indices: 77894772--77894815 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
77894762 AAGTTTTATA
77894772 GATTATGGAATTAAG
1 GATTATGG-ATTAAG
*
77894787 GATTATGGATTAGG
1 GATTATGGATTAAG
* *
77894801 GATTTTGGTTTAAG
1 GATTATGGATTAAG
77894815 G
1 G
77894816 GTTAATGTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.30, C:0.00, G:0.32, T:0.39
Consensus pattern (14 bp):
GATTATGGATTAAG
Found at i:77895535 original size:84 final size:84
Alignment explanation
Indices: 77895441--77895606 Score: 242
Period size: 84 Copynumber: 2.0 Consensus size: 84
77895431 TTTTCCAAAG
* * * * *
77895441 CGGCGTCGTTTCTTTACTGGAATAAAATCTTTTAGAGGCGTTTTGTAGGAAAACGCCGCAAAAGT
1 CGGCGCCGTTTCTCTACTCGAATAAAATCTTATAGAGGCGTTTTGTAAGAAAACGCCGCAAAAGT
77895506 GAATTAATGTTGGCCAACA
66 GAATTAATGTTGGCCAACA
* * * *
77895525 CGGCGCCGTTTCTCTACTCGAATGAAATCTTATAGTGGCGTTTTTTAAGAAAACGCCGCAAGAGT
1 CGGCGCCGTTTCTCTACTCGAATAAAATCTTATAGAGGCGTTTTGTAAGAAAACGCCGCAAAAGT
*
77895590 GAATTAATGTTTGCCAA
66 GAATTAATGTTGGCCAA
77895607 TGTGACACCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
84 72 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (84 bp):
CGGCGCCGTTTCTCTACTCGAATAAAATCTTATAGAGGCGTTTTGTAAGAAAACGCCGCAAAAGT
GAATTAATGTTGGCCAACA
Found at i:77896029 original size:84 final size:84
Alignment explanation
Indices: 77895949--77896151 Score: 225
Period size: 84 Copynumber: 2.4 Consensus size: 84
77895939 CATTTTTCAT
* * *
77895949 AAAAACGCTGCAAGGA-TGTATTAAAATTTGCCAA-AGCGATGCCGTTTCTCTACTAGAATAAAA
1 AAAAACGCCGCAAGGAGTGAATTAAAATTTGCCAATA-CGACGCCGTTTCTCTACTAGAATAAAA
77896012 TCTTATAGCGGCGTTTTTTA
65 TCTTATAGCGGCGTTTTTTA
* ** * * *
77896032 GGAAAACGCCGCAA-GAGTGAATTAATGTTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAA
1 -AAAAACGCCGCAAGGAGTGAATTAAAATTTGCCAATACGACGCCGTTTCTCTACTAGAATAAAA
**
77896096 TCTTATATTGGCGTTTTTTA
65 TCTTATAGCGGCGTTTTTTA
* **
77896116 AGAAAACGCCGCAA-GTGTGAATTAATGTTTGCCAAT
1 A-AAAACGCCGCAAGGAGTGAATTAAAATTTGCCAAT
77896152 GCGCACCGTT
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
83 2 0.02
84 100 0.97
85 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (84 bp):
AAAAACGCCGCAAGGAGTGAATTAAAATTTGCCAATACGACGCCGTTTCTCTACTAGAATAAAAT
CTTATAGCGGCGTTTTTTA
Found at i:77896177 original size:84 final size:84
Alignment explanation
Indices: 77895990--77896195 Score: 251
Period size: 84 Copynumber: 2.5 Consensus size: 84
77895980 CAAAGCGATG
* * *
77895990 CCGTTTCTCTACT-AGAATAAAATCTTATAGC-GGCGTTTTTTAGGAAAACGCCGCAAGAGTGAA
1 CCGTTTCGCTACTGA-AATGAAATCTTATA-CTGGCGTTTTTTAAGAAAACGCCGCAAGAGTGAA
*
77896053 TTAATGTTTGCCAATACGGCG
64 TTAATGTTTGCCAATACGGCA
* * * *
77896074 CCGTTTCTCTACTGGAATGAAATCTTATATTGGCGTTTTTTAAGAAAACGCCGCAAGTGTGAATT
1 CCGTTTCGCTACTGAAATGAAATCTTATACTGGCGTTTTTTAAGAAAACGCCGCAAGAGTGAATT
*
77896139 AATGTTTGCCAATGC-GCA
66 AATGTTTGCCAATACGGCA
* *
77896157 CCGTTTCGCTTCATGAAATG-AAT-TTATACTGGCATTTTT
1 CCGTTTCGCTAC-TGAAATGAAATCTTATACTGGCGTTTTT
77896196 GCTAGAAATG
Statistics
Matches: 107, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
82 14 0.13
83 15 0.14
84 78 0.73
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (84 bp):
CCGTTTCGCTACTGAAATGAAATCTTATACTGGCGTTTTTTAAGAAAACGCCGCAAGAGTGAATT
AATGTTTGCCAATACGGCA
Found at i:77896547 original size:84 final size:83
Alignment explanation
Indices: 77896425--77896821 Score: 417
Period size: 84 Copynumber: 4.7 Consensus size: 83
77896415 TTCTTATGTT
** * * *** * * * *
77896425 TTAAAATTTATCAAAACGGCGCCGTTTATCTTGAGGAATGAAATATTTTTGTGGCGATTTTGATA
1 TTAAAATTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGC-ATTTT-TTA
* *
77896490 -AAAATGCCGCAATGA-TGTA
64 GAAAACGCCGCAA-GAGTGAA
*
77896509 TTAAAATTTGCCAA-AGCGGCGCCGTTTCTCTACTGGAATAAAATCTTATAGTGGCATTTTTTAG
1 TTAAAATTTGCCAATA-CGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTA-
77896573 GAAAACGCCGCAAGAGTGAA
64 GAAAACGCCGCAAGAGTGAA
** *
77896593 TTAATGTTTGCCAATACGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAGG
1 TTAAAATTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTA-G
77896658 AAAACGCCGCAAGAGTGAA
65 AAAACGCCGCAAGAGTGAA
** *
77896677 TTAATGTTTGCCAATACGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAAG
1 TTAAAATTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTT-AG
*
77896742 AAAACGCCGCAAGTGTGAA
65 AAAACGCCGCAAGAGTGAA
** * * * * * * *
77896761 TTAATGTTTGTCAATGCGGCACCGTTTCGCTTCATGAAATG-AAT-TTATACTGGCATTTTTT
1 TTAAAATTTGCCAATACGGCGCCGTTTCTCTAC-TGGAATGAAATCTTATAGTGGCATTTTTT
77896822 CTAGAAACGC
Statistics
Matches: 280, Mismatches: 26, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
82 2 0.01
83 24 0.09
84 246 0.88
85 8 0.03
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (83 bp):
TTAAAATTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAGA
AAACGCCGCAAGAGTGAA
Found at i:77896582 original size:540 final size:542
Alignment explanation
Indices: 77895381--77896691 Score: 2137
Period size: 540 Copynumber: 2.4 Consensus size: 542
77895371 TAAAATTGTA
* ** * *
77895381 AAATATTTTTGTGGCGTTTTTAATAAAAACATCGTAAGGAT-TCATTAAAATTTTCCAAAGCGGC
1 AAATATTTTTGTGGCGATTTTAATAAAAACGCCGCAAGGATGT-ATTAAAATTTGCCAAAGCGGC
* * * * *
77895445 GTCGTTTCTTTACTGGAATAAAATCTTTTAGAGGCGTTTTGTAGGAAAACGCCGCAAAAGTGAAT
65 GCCGTTTCTCTACTGGAATAAAATCTTATAGAGGCGTTTTTTAGGAAAACGCCGCAAGAGTGAAT
* * *
77895510 TAATGTTGGCCAACACGGCGCCGTTTCTCTACTCGAATGAAATCTTATAGTGGCGTTTTTTAAGA
130 TAATGTTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGCGTTTTTTAAGA
*
77895575 AAACGCCGCAAGAGTGAATTAATGTTTGCCAATGTGACACCATTTCGCTTCATGAAATGAATTAT
195 AAACGCCGCAAGAGTGAATTAATGTTTGCCAATGCGACACCATTTCGCTTCATGAAATGAATTAT
* *
77895640 ACTGGCGTTTTTGCTAGAAACACCAGAAATATGCATTAAAGTTTAGTAAAATGGCACCGTCTTTT
260 ACTGGCATTTTTGCTAGAAACACCAGAAATATGCATTAAAGTTTAGTAAAACGGCACCGTCTTTT
*
77895705 GTTCAGTACTTTATTTTGGTGGCGTTTTTTTATTAAAACGCTGCAAATATCGGAAGCAATAGCGG
325 GTTCAGTACTTTATTTTGGTGGCGTTTTTTTATTAAAACGCTGAAAATATCGGAAGCAATAGCGG
*
77895770 CGTTTTGGCCTAAAACGCCGCAAATATATATTCAAATTCTTTTATACGTCGTCGTTTCAGTTGAG
390 CGTTTTGGCCTAAAACGCCGCAAATATATATTCAAA-T-TTTTATACGCCGTCGTTTCAGTTGAG
77895835 GAATTTAATTTTTTTAGTGGCATTTTTCGAGAAAACGCCGTTCTTATGTTTTAAAATTTATCAAA
453 GAATTTAATTTTTTTAGTGGCATTTTTCGAGAAAACGCCGTTCTTATGTTTTAAAATTTATCAAA
* *
77895900 ACGGTGCTGTTTATCTTGAGGAATG
518 ACGGCGCCGTTTATCTTGAGGAATG
* * **
77895925 AAATATTTTTGTGGC-ATTTTTCATAAAAACGCTGCAAGGATGTATTAAAATTTGCCAAAGCGAT
1 AAATATTTTTGTGGCGA-TTTTAATAAAAACGCCGCAAGGATGTATTAAAATTTGCCAAAGCGGC
* *
77895989 GCCGTTTCTCTACTAGAATAAAATCTTATAGCGGCGTTTTTTAGGAAAACGCCGCAAGAGTGAAT
65 GCCGTTTCTCTACTGGAATAAAATCTTATAGAGGCGTTTTTTAGGAAAACGCCGCAAGAGTGAAT
*
77896054 TAATGTTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATATTGGCGTTTTTTAAGA
130 TAATGTTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGCGTTTTTTAAGA
* *
77896119 AAACGCCGCAAGTGTGAATTAATGTTTGCCAATGCG-CACCGTTTCGCTTCATGAAATGAATTTA
195 AAACGCCGCAAGAGTGAATTAATGTTTGCCAATGCGACACCATTTCGCTTCATGAAATGAA-TTA
** **
77896183 TACTGGCATTTTTGCTAGAAATGCTGGAAATATGCATTAAAGTTTAGTAAAACGGCACCGTCTTT
259 TACTGGCATTTTTGCTAGAAACACCAGAAATATGCATTAAAGTTTAGTAAAACGGCACCGTCTTT
*
77896248 TGTTCAGTACTTTATTTTGGTGGCG-TTTTTTATTAAAACGTTGAAAATATCGGAAGCAATAGCG
324 TGTTCAGTACTTTATTTTGGTGGCGTTTTTTTATTAAAACGCTGAAAATATCGGAAGCAATAGCG
* *
77896312 GCGTTTTGGCCTAAAATGCTGCAAATATATATTCAAA-TTTTATACGCCGTCGTTTCAGTTGAGG
389 GCGTTTTGGCCTAAAACGCCGCAAATATATATTCAAATTTTTATACGCCGTCGTTTCAGTTGAGG
*
77896376 AATTTAATTTTTTTAGTGGCATTTTTCGGGAAAACGCCGTTCTTATGTTTTAAAATTTATCAAAA
454 AATTTAATTTTTTTAGTGGCATTTTTCGAGAAAACGCCGTTCTTATGTTTTAAAATTTATCAAAA
77896441 CGGCGCCGTTTATCTTGAGGAATG
519 CGGCGCCGTTTATCTTGAGGAATG
* * *
77896465 AAATATTTTTGTGGCGATTTTGATAAAAATGCCGCAATGATGTATTAAAATTTGCCAAAGCGGCG
1 AAATATTTTTGTGGCGATTTTAATAAAAACGCCGCAAGGATGTATTAAAATTTGCCAAAGCGGCG
* *
77896530 CCGTTTCTCTACTGGAATAAAATCTTATAGTGGCATTTTTTAGGAAAACGCCGCAAGAGTGAATT
66 CCGTTTCTCTACTGGAATAAAATCTTATAGAGGCGTTTTTTAGGAAAACGCCGCAAGAGTGAATT
* * *
77896595 AATGTTTGCCAATACGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAGGAA
131 AATGTTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGCGTTTTTTAAGAA
77896660 AACGCCGCAAGAGTGAATTAATGTTTGCCAAT
196 AACGCCGCAAGAGTGAATTAATGTTTGCCAAT
77896692 ACGGCGTCGT
Statistics
Matches: 712, Mismatches: 51, Indels: 12
0.92 0.07 0.02
Matches are distributed among these distances:
540 323 0.45
541 1 0.00
543 95 0.13
544 292 0.41
545 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (542 bp):
AAATATTTTTGTGGCGATTTTAATAAAAACGCCGCAAGGATGTATTAAAATTTGCCAAAGCGGCG
CCGTTTCTCTACTGGAATAAAATCTTATAGAGGCGTTTTTTAGGAAAACGCCGCAAGAGTGAATT
AATGTTTGCCAATACGGCGCCGTTTCTCTACTGGAATGAAATCTTATAGTGGCGTTTTTTAAGAA
AACGCCGCAAGAGTGAATTAATGTTTGCCAATGCGACACCATTTCGCTTCATGAAATGAATTATA
CTGGCATTTTTGCTAGAAACACCAGAAATATGCATTAAAGTTTAGTAAAACGGCACCGTCTTTTG
TTCAGTACTTTATTTTGGTGGCGTTTTTTTATTAAAACGCTGAAAATATCGGAAGCAATAGCGGC
GTTTTGGCCTAAAACGCCGCAAATATATATTCAAATTTTTATACGCCGTCGTTTCAGTTGAGGAA
TTTAATTTTTTTAGTGGCATTTTTCGAGAAAACGCCGTTCTTATGTTTTAAAATTTATCAAAACG
GCGCCGTTTATCTTGAGGAATG
Found at i:77896828 original size:84 final size:84
Alignment explanation
Indices: 77896515--77896821 Score: 467
Period size: 84 Copynumber: 3.7 Consensus size: 84
77896505 TGTATTAAAA
* *
77896515 TTTGCCAA-AGCGGCGCCGTTTCTCTACTGGAATAAAATCTTATAGTGGCATTTTTTAGGAAAAC
1 TTTGCCAATA-CGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAGGAAAAC
77896579 GCCGCAAGAGTGAATTAATG
65 GCCGCAAGAGTGAATTAATG
77896599 TTTGCCAATACGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAGGAAAACG
1 TTTGCCAATACGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAGGAAAACG
77896664 CCGCAAGAGTGAATTAATG
66 CCGCAAGAGTGAATTAATG
*
77896683 TTTGCCAATACGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAAGAAAACG
1 TTTGCCAATACGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAGGAAAACG
*
77896748 CCGCAAGTGTGAATTAATG
66 CCGCAAGAGTGAATTAATG
* * ** * * * *
77896767 TTTGTCAATGCGGCACCGTTTCGCTTCATGAAATG-AAT-TTATACTGGCATTTTTT
1 TTTGCCAATACGGCGTCGTTTCTCTAC-TGGAATGAAATCTTATAGTGGCATTTTTT
77896822 CTAGAAACGC
Statistics
Matches: 209, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
83 16 0.08
84 186 0.89
85 7 0.03
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (84 bp):
TTTGCCAATACGGCGTCGTTTCTCTACTGGAATGAAATCTTATAGTGGCATTTTTTAGGAAAACG
CCGCAAGAGTGAATTAATG
Found at i:77898421 original size:47 final size:45
Alignment explanation
Indices: 77898344--77898457 Score: 171
Period size: 47 Copynumber: 2.5 Consensus size: 45
77898334 TTGTTTCATA
77898344 TACTTACATTACTT--AAATATATATTCTTAAGTATATATTACAT
1 TACTTACATTACTTACAAATATATATTCTTAAGTATATATTACAT
*
77898387 TACTTACATTACTTACCGAAATATATATTTTTAAGTATATATTACAT
1 TACTTACATTACTTA-C-AAATATATATTCTTAAGTATATATTACAT
77898434 TACTTACATTACTTACTAAA-ATAT
1 TACTTACATTACTTAC-AAATATAT
77898458 GTTACATTAC
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
43 14 0.22
45 4 0.06
46 4 0.06
47 43 0.66
ACGTcount: A:0.39, C:0.13, G:0.03, T:0.45
Consensus pattern (45 bp):
TACTTACATTACTTACAAATATATATTCTTAAGTATATATTACAT
Found at i:77898467 original size:18 final size:18
Alignment explanation
Indices: 77898441--77898531 Score: 96
Period size: 18 Copynumber: 4.9 Consensus size: 18
77898431 CATTACTTAC
77898441 ATTAC-TTACTAAAATAT
1 ATTACATTACTAAAATAT
* *
77898458 GTTACATTACTTAAATAT
1 ATTACATTACTAAAATAT
77898476 ATTAC-TTACTAAAATTTAT
1 ATTACATTACTAAAA--TAT
*
77898495 AATTTACATTACTTAAATAT
1 -A-TTACATTACTAAAATAT
77898515 ATTACATTACTTAAAAT
1 ATTACATTAC-TAAAAT
77898532 TTTTATATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
17 12 0.20
18 24 0.39
19 9 0.15
20 4 0.07
21 4 0.07
22 8 0.13
ACGTcount: A:0.44, C:0.11, G:0.01, T:0.44
Consensus pattern (18 bp):
ATTACATTACTAAAATAT
Found at i:77898481 original size:31 final size:31
Alignment explanation
Indices: 77898423--77898512 Score: 90
Period size: 35 Copynumber: 2.6 Consensus size: 31
77898413 ATTTTTAAGT
*
77898423 ATATATTACATTACTTACATTACTTACTAAA
1 ATATATTACATTACTTAAATTACTTACTAAA
*
77898454 ATATGTTACATTACTTAAATATATTACTTACTAAA
1 ATATATTACATTACTT--A-A-ATTACTTACTAAA
77898489 ATTTATAATTTACATTACTTAAAT
1 A--TAT-A-TTACATTACTTAAAT
77898513 ATATTACATT
Statistics
Matches: 48, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
31 15 0.31
33 1 0.02
35 16 0.33
36 1 0.02
37 4 0.08
39 11 0.23
ACGTcount: A:0.42, C:0.12, G:0.01, T:0.44
Consensus pattern (31 bp):
ATATATTACATTACTTAAATTACTTACTAAA
Found at i:77898484 original size:22 final size:22
Alignment explanation
Indices: 77898432--77898524 Score: 65
Period size: 22 Copynumber: 4.4 Consensus size: 22
77898422 TATATATTAC
*
77898432 ATTACTTACATTACTTACTAAAAT
1 ATTACTTACATTACTTA--AATAT
*
77898456 A-T-GTTACATTACTTAAATAT
1 ATTACTTACATTACTTAAATAT
*
77898476 ATTACTTAC--TA---AAATTT
1 ATTACTTACATTACTTAAATAT
* *
77898493 ATAATTTACATTACTTAAATAT
1 ATTACTTACATTACTTAAATAT
77898515 ATTACATTAC
1 ATTAC-TTAC
77898525 TTAAAATTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 17
0.67 0.12 0.22
Matches are distributed among these distances:
17 12 0.23
19 2 0.04
20 7 0.13
21 1 0.02
22 24 0.46
23 5 0.10
24 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.01, T:0.44
Consensus pattern (22 bp):
ATTACTTACATTACTTAAATAT
Found at i:77898673 original size:30 final size:30
Alignment explanation
Indices: 77898634--77898691 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
77898624 TTATAAATAA
77898634 TATACATAAAAGTG-ATATACTTACATAACT
1 TATACATAAAAGTGCATA-ACTTACATAACT
* **
77898664 TATATATAAACTTGCATAACTTACATAA
1 TATACATAAAAGTGCATAACTTACATAA
77898692 TAACATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 21 0.88
31 3 0.12
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (30 bp):
TATACATAAAAGTGCATAACTTACATAACT
Found at i:77898684 original size:9 final size:9
Alignment explanation
Indices: 77898652--77898814 Score: 65
Period size: 9 Copynumber: 18.1 Consensus size: 9
77898642 AAAGTGATAT
77898652 ACTTACATA
1 ACTTACATA
*
77898661 ACTTATATATAA
1 AC-T-TACAT-A
*
77898673 ACTTGCATA
1 ACTTACATA
77898682 ACTTACATA
1 ACTTACATA
*
77898691 A-TAACATAATA
1 ACTTAC---ATA
77898702 ACTTACATA
1 ACTTACATA
*
77898711 A--TACACA
1 ACTTACATA
77898718 ACTTACATA
1 ACTTACATA
* *
77898727 ATTTAAATA
1 ACTTACATA
77898736 ACTTACAT-
1 ACTTACATA
*
77898744 A-GTACATA
1 ACTTACATA
**
77898752 ACTTTGATA
1 ACTTACATA
* *
77898761 ACTAACATT
1 ACTTACATA
77898770 A--TACA-A
1 ACTTACATA
77898776 TACTTACATA
1 -ACTTACATA
*
77898786 ACATACACTTA
1 ACTTACA--TA
*
77898797 A-ATACATA
1 ACTTACATA
77898805 ACTTACATA
1 ACTTACATA
77898814 A
1 A
77898815 TACACAACTT
Statistics
Matches: 112, Mismatches: 24, Indels: 36
0.65 0.14 0.21
Matches are distributed among these distances:
7 15 0.13
8 8 0.07
9 61 0.54
10 10 0.09
11 12 0.11
12 6 0.05
ACGTcount: A:0.48, C:0.18, G:0.02, T:0.33
Consensus pattern (9 bp):
ACTTACATA
Found at i:77898754 original size:16 final size:16
Alignment explanation
Indices: 77898678--77898953 Score: 103
Period size: 16 Copynumber: 16.8 Consensus size: 16
77898668 TATAAACTTG
77898678 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
77898695 CATAATAACTTACATAATA
1 C---ATAACTTACATAATA
*
77898714 CACAACTTACATAATTTA
1 CATAACTTACATAA--TA
* *
77898732 AATAACTTACATAGTA
1 CATAACTTACATAATA
**
77898748 CATAACTTTGATAACTAA
1 CATAACTTACATAA-T-A
* *
77898766 CATTA--TACAATACTTA
1 CATAACTTAC-ATA-ATA
*
77898782 CATAACATACACTTAAATA
1 CATAACTTACA--T-AATA
77898801 CATAACTTACATAATA
1 CATAACTTACATAATA
*
77898817 CACAACTTA-AT--TA
1 CATAACTTACATAATA
*
77898830 -AT-ATTATACAT-A-A
1 CATAACT-TACATAATA
*
77898843 CATAAATAATACATAATA
1 CATAACT--TACATAATA
*
77898861 CACAACTTA-AT--TA
1 CATAACTTACATAATA
*
77898874 -AT-ATTATACATAATACA
1 CATAACT-TACATAAT--A
*
77898891 CATAACTTACATAGTA
1 CATAACTTACATAATA
*
77898907 CATAACTAACATAATA
1 CATAACTTACATAATA
* *
77898923 CACAACTTACGTAACTTA
1 CATAACTTACATAA--TA
*
77898941 AATAACTTACATA
1 CATAACTTACATA
77898954 GNATAATTTA
Statistics
Matches: 194, Mismatches: 33, Indels: 63
0.67 0.11 0.22
Matches are distributed among these distances:
11 4 0.02
12 6 0.03
13 9 0.05
14 2 0.01
15 7 0.04
16 76 0.39
17 10 0.05
18 48 0.25
19 17 0.09
20 15 0.08
ACGTcount: A:0.50, C:0.18, G:0.01, T:0.31
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:77898825 original size:44 final size:46
Alignment explanation
Indices: 77898798--77898913 Score: 173
Period size: 44 Copynumber: 2.6 Consensus size: 46
77898788 ATACACTTAA
77898798 ATACATAACTTACATAATACACAACTTAATTAATATTATACATAAC
1 ATACATAACTTACATAATACACAACTTAATTAATATTATACATAAC
* *
77898844 ATAAATAA--TACATAATACACAACTTAATTAATATTATACATAAT
1 ATACATAACTTACATAATACACAACTTAATTAATATTATACATAAC
* * *
77898888 ACACATAACTTACATAGTACATAACT
1 ATACATAACTTACATAATACACAACT
77898914 AACATAATAC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 41 0.66
46 21 0.34
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.32
Consensus pattern (46 bp):
ATACATAACTTACATAATACACAACTTAATTAATATTATACATAAC
Found at i:77898852 original size:21 final size:21
Alignment explanation
Indices: 77898814--77898883 Score: 86
Period size: 21 Copynumber: 3.2 Consensus size: 21
77898804 AACTTACATA
77898814 ATACACAACTTAATTAATATT
1 ATACACAACTTAATTAATATT
* * * *
77898835 ATACATAACATAAATAATACATA
1 ATACACAACTTAATTAAT--ATT
77898858 ATACACAACTTAATTAATATT
1 ATACACAACTTAATTAATATT
77898879 ATACA
1 ATACA
77898884 TAATACACAT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
21 22 0.56
23 17 0.44
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (21 bp):
ATACACAACTTAATTAATATT
Found at i:77898902 original size:9 final size:9
Alignment explanation
Indices: 77898890--77898953 Score: 55
Period size: 9 Copynumber: 7.6 Consensus size: 9
77898880 TACATAATAC
77898890 ACATAACTT
1 ACATAACTT
*
77898899 ACAT-A-GT
1 ACATAACTT
*
77898906 ACATAACTA
1 ACATAACTT
77898915 ACATAA--T
1 ACATAACTT
*
77898922 ACACAACTT
1 ACATAACTT
*
77898931 ACGTAACTT
1 ACATAACTT
*
77898940 AAATAACTT
1 ACATAACTT
77898949 ACATA
1 ACATA
77898954 GNATAATTTA
Statistics
Matches: 41, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
7 10 0.24
8 2 0.05
9 29 0.71
ACGTcount: A:0.48, C:0.20, G:0.03, T:0.28
Consensus pattern (9 bp):
ACATAACTT
Found at i:77901065 original size:43 final size:43
Alignment explanation
Indices: 77901013--77901307 Score: 349
Period size: 43 Copynumber: 6.9 Consensus size: 43
77901003 ATTTGTGAGG
* *
77901013 GAAGCGCCGCTAAAGAACATGACCTGTAGCGGTGTTTGTTATA
1 GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTTATA
* *
77901056 GAAGTGCCGCTAAAGAACATGACCTTTAGCGGCATTTGTTATA
1 GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTTATA
* * *
77901099 GAAGCTCCGCTAAAGAACACGACCTTTAGCGGCGTATGTTATA
1 GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTTATA
* *
77901142 GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGACA
1 GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTTATA
* * ***
77901185 GAGGCGCCGCTAAAGAACATGACCATTAGCGGCGTTTGTGGGA
1 GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTTATA
* * ** * **
77901228 AAAGCACCGCTAAAGAACATGTTCTTTAGCGGCATTT-TTGGGA
1 GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTT-ATA
* * **
77901271 AAAGCGCCGCTAAATAACATGGTCTTTAGCGGCGTTT
1 GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTT
77901308 ATAAAAATAA
Statistics
Matches: 221, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
42 1 0.00
43 220 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (43 bp):
GAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTTATA
Found at i:77903694 original size:14 final size:14
Alignment explanation
Indices: 77903670--77903702 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
77903660 AAAATCTAAA
77903670 AAAAT-AAAAAACT
1 AAAATAAAAAAACT
*
77903683 TAAATAAAAAAACT
1 AAAATAAAAAAACT
77903697 AAAATA
1 AAAATA
77903703 TTTTTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (14 bp):
AAAATAAAAAAACT
Done.