Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 254 of 313
Found at i:77904484 original size:36 final size:36
Alignment explanation
Indices: 77904419--77904488 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
77904409 TTAATTAATT
*
77904419 TTTATATTTTTAATAACTTTTAAATTTTAAAAATATA
1 TTTATATTTTT-ATAACTTTTAAAATTTAAAAATATA
*
77904456 TTTATATTTTT-TGAATTTTTAAAATTTAAAAAT
1 TTTATATTTTTAT-AACTTTTAAAATTTAAAAAT
77904489 TAATTAATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 1 0.03
36 18 0.60
37 11 0.37
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (36 bp):
TTTATATTTTTATAACTTTTAAAATTTAAAAATATA
Found at i:77904637 original size:22 final size:21
Alignment explanation
Indices: 77904588--77904641 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
77904578 AAGGTAATTT
*
77904588 AATAAATAAAATAAATTTAAAA
1 AATAAA-AAAATAAAATTAAAA
**
77904610 GCTAAAAAAATAAAATTAATAA
1 AATAAAAAAATAAAATTAA-AA
77904632 AATAAAAAAA
1 AATAAAAAAA
77904642 AACTAAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (21 bp):
AATAAAAAAATAAAATTAAAA
Found at i:77905430 original size:23 final size:22
Alignment explanation
Indices: 77905388--77905430 Score: 52
Period size: 23 Copynumber: 1.9 Consensus size: 22
77905378 AATTTTTATA
*
77905388 TTTTTATTTTAGGAATTTAATT
1 TTTTTATTTTAGGAAATTAATT
77905410 TTTTTACTTTTCA-GAAATTAA
1 TTTTTA-TTTT-AGGAAATTAA
77905431 GTTTAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 6 0.33
23 11 0.61
24 1 0.06
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.58
Consensus pattern (22 bp):
TTTTTATTTTAGGAAATTAATT
Found at i:77907668 original size:9 final size:10
Alignment explanation
Indices: 77907656--77907693 Score: 55
Period size: 9 Copynumber: 4.1 Consensus size: 10
77907646 ATGTTTTAGC
77907656 AATT-TTATT
1 AATTATTATT
77907665 AATTATTATT
1 AATTATTATT
77907675 -ATTATTATT
1 AATTATTATT
77907684 -ATTATTATT
1 AATTATTATT
77907693 A
1 A
77907694 TCATCATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 22 0.81
10 5 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
AATTATTATT
Found at i:77907674 original size:3 final size:3
Alignment explanation
Indices: 77907660--77907694 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
77907650 TTTAGCAATT
77907660 TTA TTAA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA T
77907695 CATCATCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:77908389 original size:110 final size:110
Alignment explanation
Indices: 77908196--77908590 Score: 591
Period size: 110 Copynumber: 3.6 Consensus size: 110
77908186 AATATTTAGC
* * * *
77908196 CGTTTGGAAATTCGAAAAAACATGCCCTAAGGTGCTAGGTATTGATTTTTCTCGTTCAACCAAAT
1 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
77908261 GGCTTAATATCCTTTTAAAAATTTTCAAAATAAGGCAATGTTTTA
66 GGCTTAATATCCTTTTAAAAATTTTCAAAATAAGGCAATGTTTTA
77908306 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
1 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
*
77908371 GGCTTAATATCCTTTTAAAAATTTTCAAAATATGGCAATGTTTTA
66 GGCTTAATATCCTTTTAAAAATTTTCAAAATAAGGCAATGTTTTA
*
77908416 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACTAAAT
1 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
* * * *
77908481 GGCTTAATATCTTTTTTTAAAAAAAATTT-AAAATAAGACAATGTTTTG
66 GGCTTAATATC--CTTTT--AAAAATTTTCAAAATAAGGCAATGTTTTA
* * * * *
77908529 CGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGCTGGGTTTCGA--TTTCTCGTTTAACCAAAT
1 CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
77908591 TGCCAAATAT
Statistics
Matches: 264, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
110 196 0.74
112 28 0.11
113 32 0.12
114 8 0.03
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (110 bp):
CGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
GGCTTAATATCCTTTTAAAAATTTTCAAAATAAGGCAATGTTTTA
Found at i:77910622 original size:10 final size:10
Alignment explanation
Indices: 77910607--77910631 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
77910597 TTTGTCACAT
77910607 ATTTTAGTCC
1 ATTTTAGTCC
77910617 ATTTTAGTCC
1 ATTTTAGTCC
77910627 ATTTT
1 ATTTT
77910632 TGTAACTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.16, G:0.08, T:0.56
Consensus pattern (10 bp):
ATTTTAGTCC
Found at i:77914729 original size:2 final size:2
Alignment explanation
Indices: 77914724--77914772 Score: 71
Period size: 2 Copynumber: 24.5 Consensus size: 2
77914714 TTTTTTCCCT
* * *
77914724 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC CC CC TT TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
77914766 TC TC TC T
1 TC TC TC T
77914773 TCTTTTCTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:77914779 original size:16 final size:16
Alignment explanation
Indices: 77914728--77914781 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
77914718 TTCCCTTCTC
*
77914728 TCTCTCTCTCTCTCTCTC
1 TCTCTCTCTCT-TCT-TT
** *
77914746 TCTCTCTCTCCCCCTT
1 TCTCTCTCTCTTCTTT
77914762 TCTCTCTCTCTTCTTT
1 TCTCTCTCTCTTCTTT
77914778 TCTC
1 TCTC
77914782 CATTCTCTAC
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
16 18 0.62
17 1 0.03
18 10 0.34
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (16 bp):
TCTCTCTCTCTTCTTT
Found at i:77916408 original size:23 final size:23
Alignment explanation
Indices: 77916381--77916479 Score: 105
Period size: 23 Copynumber: 4.3 Consensus size: 23
77916371 CCTTTGTGGA
*
77916381 GTATTCTGTTTGCCTTGTGAGGC
1 GTATTCTGTTTGGCTTGTGAGGC
* * *
77916404 ATATTTTGTTTGGCTTGTGTGGC
1 GTATTCTGTTTGGCTTGTGAGGC
*
77916427 GTATTTTGTTTGGCTTGTGTA-GC
1 GTATTCTGTTTGGCTTGTG-AGGC
77916450 GTATTCTGTTTGGCGTTTGTGA--C
1 GTATTCTGTTTGGC--TTGTGAGGC
77916473 GTATTCT
1 GTATTCT
77916480 ATAAATGTCT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
23 60 0.91
24 1 0.02
25 5 0.08
ACGTcount: A:0.09, C:0.12, G:0.29, T:0.49
Consensus pattern (23 bp):
GTATTCTGTTTGGCTTGTGAGGC
Found at i:77916425 original size:46 final size:46
Alignment explanation
Indices: 77916373--77916479 Score: 121
Period size: 46 Copynumber: 2.3 Consensus size: 46
77916363 CAATATTGCC
*
77916373 TTTGTGGAGTATTCTGTTTGCCTTGTG-AGGCATATTTTGTTTGGC-
1 TTTGTGGAGTATTCTGTTTGCCTTGTGTA-GCATATTCTGTTTGGCG
* * * *
77916418 TTGTGTGGCGTATTTTGTTTGGCTTGTGTAGCGTATTCTGTTTGGCG
1 TT-TGTGGAGTATTCTGTTTGCCTTGTGTAGCATATTCTGTTTGGCG
77916465 TTTGT-GACGTATTCT
1 TTTGTGGA-GTATTCT
77916480 ATAAATGTCT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
45 3 0.06
46 45 0.88
47 3 0.06
ACGTcount: A:0.09, C:0.11, G:0.30, T:0.50
Consensus pattern (46 bp):
TTTGTGGAGTATTCTGTTTGCCTTGTGTAGCATATTCTGTTTGGCG
Found at i:77922471 original size:72 final size:71
Alignment explanation
Indices: 77922370--77922633 Score: 334
Period size: 72 Copynumber: 3.7 Consensus size: 71
77922360 CAATGCTAAA
* * *
77922370 CTAGTTTTATCAATTGTTGATTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATATTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
77922435 GTGTAAT
66 GT-TAAT
* * * *
77922442 CTAGTGTTATCAACAGTTGTTTATATTTGGTTTTTGAATATTGAATTTATGGTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATATTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
77922507 GCTTAAT
66 G-TTAAT
* * * *
77922514 CTAGTTTTATCAGTAATTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTTT
1 CTAGTTTTATCAATAGTTGTTTATATTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
77922579 ACTAAAT
66 -GTTAAT
* * **
77922586 -TAGCTTTATCAATAGTTGTTTATATTT-GATTTTGGATATAAAATTTAT
1 CTAGTTTTATCAATAGTTGTTTATATTTGGTTTTTGGATATTGAATTTAT
77922634 TCACAGGTGA
Statistics
Matches: 166, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
70 18 0.11
71 23 0.14
72 124 0.75
73 1 0.01
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.54
Consensus pattern (71 bp):
CTAGTTTTATCAATAGTTGTTTATATTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTTAAT
Found at i:77925811 original size:18 final size:18
Alignment explanation
Indices: 77925788--77925845 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
77925778 AGCAATACTA
77925788 AACACTTAAATTTTAAAC
1 AACACTTAAATTTTAAAC
**
77925806 AACACTT---TTCCACAA-
1 AACACTTAAATTTTA-AAC
*
77925821 AACACTTAAATTTTGAAC
1 AACACTTAAATTTTAAAC
77925839 AACACTT
1 AACACTT
77925846 TTCCATAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 10
0.67 0.11 0.22
Matches are distributed among these distances:
15 10 0.33
16 2 0.07
17 2 0.07
18 16 0.53
ACGTcount: A:0.45, C:0.22, G:0.02, T:0.31
Consensus pattern (18 bp):
AACACTTAAATTTTAAAC
Found at i:77925863 original size:33 final size:33
Alignment explanation
Indices: 77925787--77925850 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
77925777 CAGCAATACT
77925787 AAACACTTAAATTTTAAACAACACTTTTCCACA
1 AAACACTTAAATTTTAAACAACACTTTTCCACA
*
77925820 AAACACTTAAATTTTGAACAACACTTTTCCA
1 AAACACTTAAATTTTAAACAACACTTTTCCA
77925851 TAGTAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.31
Consensus pattern (33 bp):
AAACACTTAAATTTTAAACAACACTTTTCCACA
Found at i:77927500 original size:14 final size:14
Alignment explanation
Indices: 77927483--77927511 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
77927473 TGTATGTATT
77927483 TCCTCTCGTTGAGC
1 TCCTCTCGTTGAGC
77927497 TCCTCTCGTTGAGC
1 TCCTCTCGTTGAGC
77927511 T
1 T
77927512 TTCTTCTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.34, G:0.21, T:0.38
Consensus pattern (14 bp):
TCCTCTCGTTGAGC
Found at i:77932486 original size:3 final size:3
Alignment explanation
Indices: 77932473--77932521 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
77932463 TTTAGTCCCG
*
77932473 TTA TT- TTA TTA TTA TTA TTA -AA TTAA TTA GTT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA -TTA TTA TTA TTA TTA
77932517 TTA TT
1 TTA TT
77932522 GCTATGTACA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 5 0.13
3 29 0.74
4 5 0.13
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:77932900 original size:18 final size:19
Alignment explanation
Indices: 77932852--77932901 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
77932842 TTTTAAAATA
*
77932852 TGTATACATACATAGATTT
1 TGTATACATTCATAGATTT
**
77932871 T-TCATATTTTCATA-ATTT
1 TGT-ATACATTCATAGATTT
77932889 TGTATACATTCAT
1 TGTATACATTCAT
77932902 GTACATGCGT
Statistics
Matches: 24, Mismatches: 5, Indels: 5
0.71 0.15 0.15
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (19 bp):
TGTATACATTCATAGATTT
Found at i:77933340 original size:106 final size:106
Alignment explanation
Indices: 77933149--77933340 Score: 240
Period size: 106 Copynumber: 1.8 Consensus size: 106
77933139 CTAAATAAGA
* * *
77933149 CAATATTTTGAGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTACTCGTTT
1 CAATATTTTGAGTTTGGAAATTCGAGAAAACGTGCACTAACATGCTGGGTTTCGATTACTCGTTT
* * * *
77933214 GGCCAAATAGTCGAATATCCTTTCGAAATTTCAAAACGAGG
66 GACCAAATAGCCAAACATCCTTTCGAAATTTCAAAACGAGG
* * * * * * * *
77933255 CAATGTTTTGTGTTTGGAAATTTGAGAGAGCGTGCACTAACATGCTGGGTTTTGATTTCTTGTTT
1 CAATATTTTGAGTTTGGAAATTCGAGAAAACGTGCACTAACATGCTGGGTTTCGATTACTCGTTT
*
77933320 GACTAAATAGCCAAACATCCT
66 GACCAAATAGCCAAACATCCT
77933341 CCTAAATCTC
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
106 70 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (106 bp):
CAATATTTTGAGTTTGGAAATTCGAGAAAACGTGCACTAACATGCTGGGTTTCGATTACTCGTTT
GACCAAATAGCCAAACATCCTTTCGAAATTTCAAAACGAGG
Found at i:77934764 original size:19 final size:19
Alignment explanation
Indices: 77934740--77934786 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
77934730 AACGTCTCTT
*
77934740 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
77934759 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
77934778 TATGCATTA
1 TTTGCATTA
77934787 GATTTTCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:77939743 original size:87 final size:87
Alignment explanation
Indices: 77939579--77940430 Score: 1272
Period size: 87 Copynumber: 9.8 Consensus size: 87
77939569 ATCAGTGAAA
* * * * *
77939579 ATCGAAAATAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAATATAGCAGATCTTGTCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* *
77939644 CCCTGCGTTAACAGTGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* * * * * *
77939666 ATCAAAAACAAAACCTTACCTCCATTGGTTGCAGTGGAGCTGATTAAAGATAGCAGATTTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
77939731 TCCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
77939753 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* * * *
77939818 CCCTACATTAACAGTGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* *
77939840 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGATTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* *
77939905 TCCTGCGTTAAGAGTGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* *
77939927 ATCGAAAACAAAGCCTTGCCTCCATCGGTTACAGTGGAGCTGGTTAAAGATATCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* **
77939992 CCCTGTATTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* * *
77940014 ATCAAAAACAAAGCCTTGCCTCGATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
*
77940079 TCCTGTGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* * *
77940101 ATCGAAAACAAAGTCTTGCCTCCATCAGTTGCAGTAGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* * *
77940166 CCCTGCATTAACAGTGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* *
77940188 ATCAAAAACAAAGCCTTGCCTCCATCGGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* *
77940253 TCCTCCATTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* * * *
77940275 ATAGAAAACAAAGCATTGCCTCCATCAGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
77940340 TCCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* * * *
77940362 ATCGAAATCAAAGCATTGCCTCCATTGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
77940427 TCCT
66 TCCT
77940431 AAGTACTAGC
Statistics
Matches: 690, Mismatches: 75, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 690 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
TCCTGCGTTAACAGCGAAGCAG
Found at i:77940644 original size:44 final size:44
Alignment explanation
Indices: 77940596--77940795 Score: 137
Period size: 44 Copynumber: 4.7 Consensus size: 44
77940586 AAATCAATCC
* *
77940596 TATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGTAGATCAAAACCATAGATCT
* * * * *
77940640 TATCTCCCT-AAGTAGTAGTGGAGCAGATCACATCC--AG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGTAGATCAAAACCATAGATCT
* ** * * *
77940680 TATCTCCCT-AGGCAGTAGTGGAGTAGA-CAGAAGA-AATCA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGTAGATCA-AA-ACCAT-AGATCT
* * * *
77940723 TATCTCCCTGAAGTTCCAGTGGAGTGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGTAGATCAAAACCATAGATCT
* * *
77940767 TATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 TATCTCCCTGAAGTTGCAGTGGAGTAGAT
77940796 TCCATCAAGT
Statistics
Matches: 117, Mismatches: 29, Indels: 20
0.70 0.17 0.12
Matches are distributed among these distances:
39 2 0.02
40 28 0.24
41 2 0.02
43 33 0.28
44 51 0.44
45 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGTAGATCAAAACCATAGATCT
Found at i:77940708 original size:127 final size:128
Alignment explanation
Indices: 77940546--77940879 Score: 512
Period size: 127 Copynumber: 2.6 Consensus size: 128
77940536 TTGGAAATTA
*
77940546 CAAGTCTTATCTCCCTAGGCAGTAATGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTT
1 CAAGTCTTATCTCCCTAGGCAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTT
* * *
77940611 GCAGTGGAGTGGATTAAAACCATAGATCTTATCTCCCT-AAGTAGTAGTGGAGCAGA-TCACAT
66 GCAGTGGAGTGGATTAAAACCACAGATCTTATCTCCCTGAAGTAGCAGTAGAGCAGATTC-CAT
* *
77940673 CCAGTCTTATCTCCCTAGGCAGTAGTGGAGTAGACAGAAGAAATCAATCCTATCTCCCTGAAGTT
1 CAAGTCTTATCTCCCTAGGCAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTT
* * *
77940738 CCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTCCAT
66 GCAGTGGAGTGGATTAAAACCACAGATCTTATCTCCCTGAAGTAGCAGTAGAGCAGATTCCAT
* * * *
77940801 CAAGTCTTACCTCCCTAAGCAGTAGTGGAGCAGAC-GAAAGAAATAAATCCTATCTCCCCGAAGT
1 CAAGTCTTATCTCCCTAGGCAGTAGTGGAGCAGACAG-AAGAAATCAATCCTATCTCCCTGAAGT
77940865 TGCAGTGGAGTGGAT
65 TGCAGTGGAGTGGAT
77940880 AAATATCAAT
Statistics
Matches: 188, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
127 98 0.52
128 88 0.47
129 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (128 bp):
CAAGTCTTATCTCCCTAGGCAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTT
GCAGTGGAGTGGATTAAAACCACAGATCTTATCTCCCTGAAGTAGCAGTAGAGCAGATTCCAT
Found at i:77940727 original size:43 final size:43
Alignment explanation
Indices: 77940553--77940731 Score: 111
Period size: 43 Copynumber: 4.2 Consensus size: 43
77940543 TTACAAGTCT
* * *
77940553 TATCTCCCTAGGCAGTAATGGAGCAGACAGAAGAAATCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAATCAATCC
** * * * * *
77940596 TATCTCCCTGAAGTTGCAGTGGAGTGGATTA-AA-ACCAT-AGATCT
1 TATCTCCCT-AAGCAGTAGTGGAGTAGA-CAGAAGA-AATCA-ATCC
* ** * * *
77940640 TATCTCCCTAAGTAGTAGT-G-G-AG-CAGATCACATCCAGTCT
1 TATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAAT-CAATCC
*
77940680 TATCTCCCTAGGCAGTAGTGGAGTAGACAGAAGAAATCAATCC
1 TATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAATCAATCC
77940723 TATCTCCCT
1 TATCTCCCT
77940732 GAAGTTCCAG
Statistics
Matches: 101, Mismatches: 23, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 22 0.22
41 3 0.03
42 2 0.02
43 34 0.34
44 34 0.34
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (43 bp):
TATCTCCCTAAGCAGTAGTGGAGTAGACAGAAGAAATCAATCC
Found at i:77942334 original size:3 final size:3
Alignment explanation
Indices: 77942321--77942369 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
77942311 TTTAGTCCCG
*
77942321 TTA TT- TTA TTA TTA TTA TTA -AA TTAA TTA GTT- TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA -TTA TTA TTA TTA TTA
77942365 TTA TT
1 TTA TT
77942370 GCTATGTACA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 5 0.13
3 29 0.74
4 5 0.13
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:77942696 original size:18 final size:19
Alignment explanation
Indices: 77942648--77942697 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
77942638 TTTTAAAATA
*
77942648 TGTATACATACATAGATTT
1 TGTATACATTCATAGATTT
**
77942667 T-TCATATTTTCATA-ATTT
1 TGT-ATACATTCATAGATTT
77942685 TGTATACATTCAT
1 TGTATACATTCAT
77942698 GTACATGTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 5
0.71 0.15 0.15
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (19 bp):
TGTATACATTCATAGATTT
Found at i:77943132 original size:106 final size:106
Alignment explanation
Indices: 77942941--77943132 Score: 258
Period size: 106 Copynumber: 1.8 Consensus size: 106
77942931 CTAAATAAGA
* *
77942941 CAATATTTTGAGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTACTCGTTT
1 CAATATTTTGAGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGGGTTTCGATTACTCGTTT
* * * *
77943006 GGCCAAATAGTCGAATATCCTTTCGAAATTTCAAAACGAGG
66 GACCAAATAGCCAAACATCCTTTCGAAATTTCAAAACGAGG
* * * * * * *
77943047 CAATGTTTTGTGTTTGGAAATTTGAGAGAGCATGCCCTAACGTGCTGGGTTTCGATTTCTTGTTT
1 CAATATTTTGAGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGGGTTTCGATTACTCGTTT
*
77943112 GACTAAATAGCCAAACATCCT
66 GACCAAATAGCCAAACATCCT
77943133 CCTAAATCTC
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
106 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (106 bp):
CAATATTTTGAGTTTGGAAATTCGAGAAAACATGCCCTAACGTGCTGGGTTTCGATTACTCGTTT
GACCAAATAGCCAAACATCCTTTCGAAATTTCAAAACGAGG
Found at i:77945365 original size:60 final size:60
Alignment explanation
Indices: 77945301--77945428 Score: 240
Period size: 60 Copynumber: 2.1 Consensus size: 60
77945291 TGATTTTTTT
77945301 TTTATAATTTTCTAAATTTCAAGGTTTGGGATTTTTTTCCCAGATTATTTTAAAGATTTA
1 TTTATAATTTTCTAAATTTCAAGGTTTGGGATTTTTTTCCCAGATTATTTTAAAGATTTA
*
77945361 TTTATAATTTTCTAAATTTCAAGGTTTGGGATTTTTTTCCCAGATTCTTTTAAAGATTTA
1 TTTATAATTTTCTAAATTTCAAGGTTTGGGATTTTTTTCCCAGATTATTTTAAAGATTTA
77945421 TTT-TAATT
1 TTTATAATT
77945429 ATATATTTTA
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
59 5 0.07
60 62 0.93
ACGTcount: A:0.27, C:0.09, G:0.11, T:0.53
Consensus pattern (60 bp):
TTTATAATTTTCTAAATTTCAAGGTTTGGGATTTTTTTCCCAGATTATTTTAAAGATTTA
Found at i:77946082 original size:7 final size:7
Alignment explanation
Indices: 77946072--77946102 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
77946062 TAAAATTAAT
77946072 GAAGCGA
1 GAAGCGA
77946079 GAAGCGA
1 GAAGCGA
77946086 GAAGCGA
1 GAAGCGA
77946093 GAAGCGA
1 GAAGCGA
77946100 GAA
1 GAA
77946103 TCTTGAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.45, C:0.13, G:0.42, T:0.00
Consensus pattern (7 bp):
GAAGCGA
Found at i:77949718 original size:29 final size:29
Alignment explanation
Indices: 77949685--77949744 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
77949675 TAAAATTGAG
* * *
77949685 ATCGGACGATAAAAGTGAGCCAGTTGGTA
1 ATCGGAAGATAAAAGAGAGCCACTTGGTA
77949714 ATCGGAAGATAAAAGAGAGCCACTTGGTA
1 ATCGGAAGATAAAAGAGAGCCACTTGGTA
77949743 AT
1 AT
77949745 TTACACGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.13, G:0.28, T:0.20
Consensus pattern (29 bp):
ATCGGAAGATAAAAGAGAGCCACTTGGTA
Found at i:77951797 original size:18 final size:17
Alignment explanation
Indices: 77951767--77951801 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
77951757 GATATTTTTA
77951767 TTAATAATAATAATATT
1 TTAATAATAATAATATT
77951784 TTAATAAGTAATAATATT
1 TTAATAA-TAATAATATT
77951802 CTATTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
TTAATAATAATAATATT
Found at i:77952579 original size:5 final size:5
Alignment explanation
Indices: 77952564--77952606 Score: 77
Period size: 5 Copynumber: 8.4 Consensus size: 5
77952554 CTAAGACTAG
77952564 TTATAT TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTAT-T TTATT TTATT TTATT TTATT TTATT TTATT TTATT TT
77952607 TATGAGTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 33 0.89
6 4 0.11
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:77952882 original size:28 final size:27
Alignment explanation
Indices: 77952820--77952886 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
77952810 TGATTTGAAC
*
77952820 ATGAAATGAAATTGAAATGAGAATGAT
1 ATGAAATGAAATTGAAATGAGAAGGAT
* *
77952847 ATGAAAATGGAATTGAATTGA-AACGGAT
1 ATG-AAATGAAATTGAAATGAGAA-GGAT
77952875 AATGAAATGAAA
1 -ATGAAATGAAA
77952887 CTTGGTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
27 5 0.15
28 25 0.76
29 3 0.09
ACGTcount: A:0.52, C:0.01, G:0.22, T:0.24
Consensus pattern (27 bp):
ATGAAATGAAATTGAAATGAGAAGGAT
Found at i:77973249 original size:12 final size:12
Alignment explanation
Indices: 77973232--77973261 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
77973222 TCTGTTCATC
77973232 TTTTTTCTTCTT
1 TTTTTTCTTCTT
*
77973244 TTTTTTCTTGTT
1 TTTTTTCTTCTT
77973256 TTTTTT
1 TTTTTT
77973262 TACTTTCCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (12 bp):
TTTTTTCTTCTT
Found at i:77980010 original size:25 final size:24
Alignment explanation
Indices: 77979966--77980012 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
77979956 GTGCAAATAC
77979966 ATATAAATATTACATATATAAAAA
1 ATATAAATATTACATATATAAAAA
* *
77979990 ATATATATATGTACATGTATAAA
1 ATATAAATAT-TACATATATAAA
77980013 CTTCGGTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.36
Consensus pattern (24 bp):
ATATAAATATTACATATATAAAAA
Found at i:77981799 original size:44 final size:44
Alignment explanation
Indices: 77981746--77982301 Score: 334
Period size: 44 Copynumber: 12.8 Consensus size: 44
77981736 CCTTTATTTT
* * *
77981746 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGTTTC
* * * * *
77981790 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGA--CCT-GGTAC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGTTTC
* * * * * *
77981831 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATT-CTTGGTTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAGTTTC
* * *
77981875 AATCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGTTTC
** * *
77981919 AATCTGCTCCGTTGTAATCTCAGGGAGATAAGATCTGA-AATTTTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-T-ACTA-GTTTC
* * * * * *
77981965 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGA--CCT-GGTGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGTTTC
* * * * * * * * *
77982006 GATCTACTCTACTATAA-CTTCAGAGAGATAAGATCATTGGTTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTAGTTTC
* * * * *
77982050 AATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGTTTC
* ** * *
77982094 AATCTGCTCCGCTGTAATCTCAGGGAGATAAG--GCCT-GGTAC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGTTTC
* * * * * * * *
77982135 GATCTACTCTATTGTAA-CTTCAGAGAGATAAGA-TCCTTGGTTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC-TAGTTTC
* * * *
77982179 AATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGTTTC
* * * *
77982223 GATCTGCTCCACTGTAATCTCAGGGAGATAAGATCT-TTGGTTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TACTAGTTTC
* * *
77982267 AATCCGCTCCACTGTAATATCAGGGAGATAGGATT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT
77982302 TGTAACACCC
Statistics
Matches: 381, Mismatches: 108, Indels: 47
0.71 0.20 0.09
Matches are distributed among these distances:
40 3 0.01
41 82 0.22
42 7 0.02
43 4 0.01
44 247 0.65
45 6 0.02
46 32 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGTTTC
Found at i:77981846 original size:129 final size:129
Alignment explanation
Indices: 77981663--77981956 Score: 453
Period size: 129 Copynumber: 2.3 Consensus size: 129
77981653 AATCCCTCGG
* * * *
77981663 TCTGTTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAAA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAAA
* * * *
77981728 GATAAAATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCGA
66 GATAAAATCCTTGATTTTAATCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
* *
77981792 TCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCTACTGTAACTTCAGAGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAAA
* * *
77981857 GATAAGATTCTTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
66 GATAAAATCCTTGATTTTAATCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
* *
77981921 TCTGCTCCGTTGTAATCTCAGGGAGATAAGATCTGA
1 TCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGA
77981957 AATTTTTCAG
Statistics
Matches: 149, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 149 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (129 bp):
TCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAAA
GATAAAATCCTTGATTTTAATCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
Found at i:77981986 original size:175 final size:175
Alignment explanation
Indices: 77981792--77982125 Score: 580
Period size: 175 Copynumber: 1.9 Consensus size: 175
77981782 CTAGCTTCGA
* * *
77981792 TCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCTACTGTAACTTCAGAGA
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGGTACGATCTACTCTACTATAACTTCAGAGA
*
77981857 GATAAGATTC-TTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
66 GATAAGA-TCATTGGTTTTAATCCGCTCCACTATAATATCAGGGAGATAAGATTACTAGCTTCAA
*
77981921 TCTGCTCCGTTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCAG
130 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCAG
* *
77981967 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTATAACTTCAGAGA
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGGTACGATCTACTCTACTATAACTTCAGAGA
*
77982032 GATAAGATCATTGGTTTTAATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGCTTCAAT
66 GATAAGATCATTGGTTTTAATCCGCTCCACTATAATATCAGGGAGATAAGATTACTAGCTTCAAT
77982097 CTGCTCCGCTGTAATCTCAGGGAGATAAG
131 CTGCTCCGCTGTAATCTCAGGGAGATAAG
77982126 GCCTGGTACG
Statistics
Matches: 150, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
174 2 0.01
175 148 0.99
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (175 bp):
TCTGCTCCACTGTAATCTCAGGGAAATAAGACCTGGTACGATCTACTCTACTATAACTTCAGAGA
GATAAGATCATTGGTTTTAATCCGCTCCACTATAATATCAGGGAGATAAGATTACTAGCTTCAAT
CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCAG
Found at i:77982138 original size:129 final size:129
Alignment explanation
Indices: 77981962--77982255 Score: 489
Period size: 129 Copynumber: 2.3 Consensus size: 129
77981952 TCTGAAATTT
* * * *
77981962 TTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTACTCTACTATAACTTC
1 TTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCTACTATAACTTC
77982027 AGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGC
66 AGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGC
* * * *
77982091 TTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGGCCTGGTACGATCTACTCTATTGTAACTTC
1 TTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCTACTATAACTTC
* *
77982156 AGAGAGATAAGATCCTTGGTTTTAATCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGC
66 AGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGC
*
77982220 TTCGATCTGCTCCACTGTAATCTCAGGGAGATAAGA
1 TTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGA
77982256 TCTTTGGTTT
Statistics
Matches: 152, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 152 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (129 bp):
TTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGGTACGATCTACTCTACTATAACTTC
AGAGAGATAAGATCATTGGTTTTAATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGC
Found at i:77982166 original size:304 final size:304
Alignment explanation
Indices: 77981617--77982258 Score: 1025
Period size: 304 Copynumber: 2.1 Consensus size: 304
77981607 GTGGTTTTAG
* * * * *
77981617 TCTGCTCCACTGCAA-CGTTAGAGAGATAAAATCTGAAATCCCTCGGTCTGTTCCACTGTAATCT
1 TCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTGAAATCCCTCAGTCTGTTCCACTGTAATCT
* * * * *
77981681 CAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAAAGATAAAATCCTTTATTTT
65 CAGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAAAGATAAAATCATTGATTTT
* * *
77981746 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCGATCTGCTCCGCTGTAATCTC
130 AATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
*
77981811 AGGGAGATAAGACCTGGTACGATCTACTCTACTGTAACTTCAGAGAGATAAGATTCTTGGTTTTA
195 AGGGAGATAAGACCTGGTACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTA
77981876 ATCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
260 ATCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
** ***
77981921 TCTGCTCCGTTGTAATCTCAGGGAGATAAGATCTGAAATTTTTCAGTCTGTTCCACTGTAATCTC
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATCCCTCAGTCTGTTCCACTGTAATCTC
* * * *
77981986 AGGGAAATAAGACCTGGTGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTGGTTTTA
66 AGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAAAGATAAAATCATTGATTTTA
77982051 ATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCA
131 ATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCA
* *
77982116 GGGAGATAAGGCCTGGTACGATCTACTCTATTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAA
196 GGGAGATAAGACCTGGTACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAA
* *
77982181 TCCGCTCCACTGTAATATCAGGGAGATAGGATTACTAGCTTCGA
261 TCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
77982225 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCT
1 TCTGCTCCACTGTAATCTCAGGGAGATAAGATCT
77982259 TTGGTTTTAA
Statistics
Matches: 308, Mismatches: 29, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
304 307 1.00
305 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (304 bp):
TCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAATCCCTCAGTCTGTTCCACTGTAATCTC
AGGGAAATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAAAGATAAAATCATTGATTTTA
ATCCGCTCCACTATAATATCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCA
GGGAGATAAGACCTGGTACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAA
TCCGCTCCACTGTAATATCAGGGAGATAAGATTACTAGCTTCAA
Found at i:77983933 original size:47 final size:47
Alignment explanation
Indices: 77983855--77984414 Score: 818
Period size: 47 Copynumber: 11.7 Consensus size: 47
77983845 CCCTTCGGGA
* * * *
77983855 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
77983902 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* ** *
77983949 CTTATCACATATATACACTTTCATATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
77983996 CTTATCACATATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
77984045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
77984092 CTTATCACATATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
77984141 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
77984188 CTTATCACATATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
77984237 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
77984284 CTTATCACATATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
77984333 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
77984380 CTTATCACATATATATACACTTTCACA-T-ATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
77984415 ATACTATCAT
Statistics
Matches: 465, Mismatches: 38, Indels: 20
0.89 0.07 0.04
Matches are distributed among these distances:
47 273 0.59
48 1 0.00
49 191 0.41
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:77984045 original size:96 final size:96
Alignment explanation
Indices: 77983855--77984416 Score: 995
Period size: 96 Copynumber: 5.9 Consensus size: 96
77983845 CCCTTCGGGA
* * * * * * * *
77983855 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
77983918 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCATATTGGCCATTCGGC
* *
77983949 CTTATCACATATATACACTTTCATATTCATCACATCAGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77984014 ACTTTCACATTCATCATATTGGCCATTCGGC
66 ACTTTCACATTCATCATATTGGCCATTCGGC
77984045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77984110 ACTTTCACATTCATCATATTGGCCATTCGGC
66 ACTTTCACATTCATCATATTGGCCATTCGGC
77984141 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77984206 ACTTTCACATTCATCATATTGGCCATTCGGC
66 ACTTTCACATTCATCATATTGGCCATTCGGC
77984237 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77984302 ACTTTCACATTCATCATATTGGCCATTCGGC
66 ACTTTCACATTCATCATATTGGCCATTCGGC
77984333 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
77984398 ACTTTCACATATCA-CATAT
66 ACTTTCACAT-TCATCATAT
77984417 ACTATCATGT
Statistics
Matches: 452, Mismatches: 13, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
94 45 0.10
96 404 0.89
97 3 0.01
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCATATTGGCCATTCGGC
Found at i:77988004 original size:4 final size:4
Alignment explanation
Indices: 77987995--77988022 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
77987985 TTAAACTAAT
77987995 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
77988023 AATAAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:77989423 original size:23 final size:22
Alignment explanation
Indices: 77989372--77989423 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
77989362 CCTCGTCTTT
*
77989372 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
77989394 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
77989417 TTCTTTT
1 TTCTTTT
77989424 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:77989438 original size:18 final size:18
Alignment explanation
Indices: 77989417--77989455 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
77989407 TTTCTTCAAC
* *
77989417 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
77989435 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
77989453 TTC
1 TTC
77989456 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:77991251 original size:150 final size:150
Alignment explanation
Indices: 77990980--77991280 Score: 593
Period size: 150 Copynumber: 2.0 Consensus size: 150
77990970 ATACCAAATG
*
77990980 ATACGGGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAACCCTA
1 ATACGAGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAACCCTA
77991045 AACAATTAGATCTGAAACGAAACAGAAAATTAAAAGATTAGATTTTTGAATTTTCAGATCTGAAA
66 AACAATTAGATCTGAAACGAAACAGAAAATTAAAAGATTAGATTTTTGAATTTTCAGATCTGAAA
77991110 TAAAATCCCCAAATCAGCAA
131 TAAAATCCCCAAATCAGCAA
77991130 ATACGAGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAACCCTA
1 ATACGAGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAACCCTA
77991195 AACAATTAGATCTGAAACGAAACAGAAAATTAAAAGATTAGATTTTTGAATTTTCAGATCTGAAA
66 AACAATTAGATCTGAAACGAAACAGAAAATTAAAAGATTAGATTTTTGAATTTTCAGATCTGAAA
77991260 TAAAATCCCCAAATCAGCAA
131 TAAAATCCCCAAATCAGCAA
77991280 A
1 A
77991281 GAATCAAATT
Statistics
Matches: 150, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (150 bp):
ATACGAGGTTGCGCGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAACCCTA
AACAATTAGATCTGAAACGAAACAGAAAATTAAAAGATTAGATTTTTGAATTTTCAGATCTGAAA
TAAAATCCCCAAATCAGCAA
Found at i:77992755 original size:23 final size:23
Alignment explanation
Indices: 77992725--77992787 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
77992715 CCTTTTTGAA
77992725 CCATTTCCATTTCGTACCAAATT
1 CCATTTCCATTTCGTACCAAATT
*
77992748 CCATTTCCATTTCGCACCAAATT
1 CCATTTCCATTTCGTACCAAATT
* *
77992771 ACATTACCATTTCGTAC
1 CCATTTCCATTTCGTAC
77992788 AAAACCCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.05, T:0.37
Consensus pattern (23 bp):
CCATTTCCATTTCGTACCAAATT
Found at i:77998750 original size:45 final size:45
Alignment explanation
Indices: 77998701--77998933 Score: 403
Period size: 45 Copynumber: 5.2 Consensus size: 45
77998691 TCGGCCATGG
* * * *
77998701 TGCTTCCTCAATTTGTTCCATAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
77998746 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
77998791 TTCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
77998836 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
77998881 TGCTTCCTCAAATTCTCCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
77998926 TGCTTCCT
1 TGCTTCCT
77998934 TAATTTCATG
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 179 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:78000990 original size:37 final size:37
Alignment explanation
Indices: 78000929--78001007 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
78000919 TTATTACGAA
* * *
78000929 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGAAAAAATCTCCACACGAAGTCATCGG
*
78000966 GTCTTACCCGGAAAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGGAAAAAATCT-CCACACGAAGTCATCGG
78001003 GTCTT
1 GTCTT
78001008 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGAAAAAATCTCCACACGAAGTCATCGG
Found at i:78001205 original size:47 final size:47
Alignment explanation
Indices: 78001126--78001663 Score: 887
Period size: 47 Copynumber: 11.4 Consensus size: 47
78001116 CCCTTCGGGA
* * * * * * *
78001126 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78001173 CCTGTCACATATATACACTTTCACATTGATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78001220 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78001267 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78001314 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78001361 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78001410 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78001457 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78001504 CTTATCAGACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78001551 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78001598 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78001645 CTTATCACATATATACACT
1 CTTATCACATATATACACT
78001664 GTCTTGGCTG
Statistics
Matches: 462, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 416 0.90
49 46 0.10
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78006837 original size:43 final size:43
Alignment explanation
Indices: 78006755--78006838 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
78006745 ACATGAATCA
* ** **
78006755 CATCCATCATGAACTCAGACCTCTTTACGAGCTTGGATGCTTG
1 CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGCTTG
78006798 CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGCT
1 CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGCT
78006839 ACACACCTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (43 bp):
CATCCATAATGAACTCAGACCTCTCAACGAGCTCAGATGCTTG
Found at i:78008924 original size:48 final size:48
Alignment explanation
Indices: 78008855--78009215 Score: 323
Period size: 48 Copynumber: 7.5 Consensus size: 48
78008845 TGGGGTTATG
*
78008855 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * * * * * **
78008903 TGCGAGCTAGTGCAAGACCATGTTTGGAACATAGCATCAACATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * * * * *
78008951 TGTGAGCCAATGTAAGACCGTGTCTGGGACATGGCATCGGCCTCAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * **
78008999 TGTGAGCCATTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * * * *
78009047 TGTGAGCCAGTGTAAAACCATGTCTGGGACATGACATC-AGCCTCAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGA-CCTTAATA
** * * **
78009095 TGTGAGCCAGTGTAAGTTCATGTTTGGAACATGGCATCGGCATTGTTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
* * * * * *
78009143 TTTGAGCCAGCGTAAGACCATGTCTAGG-ACATGACATCAGCACC-GATGTA
1 TGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATC-G-ACCTTA-ATA
*
78009193 TGAGAGCCAGTGTAAGACCATGT
1 TGTGAGCCAGTGTAAGACCATGT
78009216 CCAGGACATG
Statistics
Matches: 241, Mismatches: 66, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
47 1 0.00
48 213 0.88
49 4 0.02
50 23 0.10
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (48 bp):
TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACCTTAATA
Found at i:78009019 original size:96 final size:96
Alignment explanation
Indices: 78008855--78009215 Score: 474
Period size: 96 Copynumber: 3.7 Consensus size: 96
78008845 TGGGGTTATG
* * * * * *
78008855 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GACCTTAATATGCGAGCTAGTGCAAG
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAG-CCTCAATATGTGAGCCAGTGTAAG
* *
78008919 ACCATGTTTGGAACATAGCATCAACATTGTTA
65 ACCATGTTTGGAACATGGCATCGACATTGTTA
* * * * *
78008951 TGTGAGCCAATGTAAGACCGTGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCATTGTAAGA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGA
78009016 CCATGTTTGGAACATGGCATCGACATTGTTA
66 CCATGTTTGGAACATGGCATCGACATTGTTA
* *
78009047 TGTGAGCCAGTGTAAAACCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGT
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGA
* *
78009112 TCATGTTTGGAACATGGCATCGGCATTGTTA
66 CCATGTTTGGAACATGGCATCGACATTGTTA
* * * * *
78009143 TTTGAGCCAGCGTAAGACCATGTCTAGGACATGACATCAGCAC-CGATGTATGAGAGCCAGTGTA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGC-CTC-A-ATATGTGAGCCAGTGTA
78009207 AGACCATGT
63 AGACCATGT
78009216 CCAGGACATG
Statistics
Matches: 234, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
96 209 0.89
97 3 0.01
98 22 0.09
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (96 bp):
TGTGAGCCAGTGTAAGACCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGA
CCATGTTTGGAACATGGCATCGACATTGTTA
Found at i:78009127 original size:144 final size:142
Alignment explanation
Indices: 78008855--78009235 Score: 370
Period size: 144 Copynumber: 2.6 Consensus size: 142
78008845 TGGGGTTATG
* * * * *
78008855 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACCTTAATATGCGAGCTAGTGCAAGA
1 TGTGAGCCAGTGTAAGACCATGTTT-GGACATGGCATCGACATT-GTATGAGAGCCAGTGTAAGA
* * * *** * *
78008920 CCATGTTTGGAACAT-AGCATCAACATTGTTATGTGAGCCAATGTAAGACCGTGTCTGGGACATG
64 CCATGTCTGGGACATGA-CATCAGCATCAATATGTGAGCCAATGTAAGACCATGTCTGGAACATG
*
78008984 GCATCGGCCTCAATA
128 GCATCGGCATCAATA
* * *
78008999 TGTGAGCCATTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATGTGAGCCAGTGTAAAA
1 TGTGAGCCAGTGTAAGACCATGTTTGG-ACATGGCATCGACATTG-TATGAGAGCCAGTGTAAGA
* * ** *
78009064 CCATGTCTGGGACATGACATCAGCCTCAATATGTGAGCCAGTGTAAGTTCATGTTTGGAACATGG
64 CCATGTCTGGGACATGACATCAGCATCAATATGTGAGCCAATGTAAGACCATGTCTGGAACATGG
***
78009129 CATCGGCATTGTTA
129 CATCGGCATCAATA
* * * *
78009143 TTTGAGCCAGCGTAAGACCATGTCTAGGACATGACATCAGCACCGA-TGTATGAGAGCCAGTGTA
1 TGTGAGCCAGTGTAAGACCATGT-TTGGACATGGCATC-G-A-C-ATTGTATGAGAGCCAGTGTA
** *
78009207 AGACCATGTCCAGGACATGGCATCAGCAT
61 AGACCATGTCTGGGACATGACATCAGCAT
78009236 TTTACCCTTT
Statistics
Matches: 194, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
143 2 0.01
144 143 0.74
145 5 0.03
146 40 0.21
147 3 0.02
148 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (142 bp):
TGTGAGCCAGTGTAAGACCATGTTTGGACATGGCATCGACATTGTATGAGAGCCAGTGTAAGACC
ATGTCTGGGACATGACATCAGCATCAATATGTGAGCCAATGTAAGACCATGTCTGGAACATGGCA
TCGGCATCAATA
Found at i:78015489 original size:42 final size:42
Alignment explanation
Indices: 78015430--78015515 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
78015420 AACAGTTAGA
78015430 GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
1 GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
78015472 GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
1 GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
78015514 GG
1 GG
78015516 GAACTTTAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.21, C:0.14, G:0.35, T:0.30
Consensus pattern (42 bp):
GGATGAATCTTTGGGTCCTCGTTTTCGACAAGTAGAGAGTGG
Found at i:78039816 original size:24 final size:24
Alignment explanation
Indices: 78039784--78039832 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
78039774 ATGTGTTCAT
78039784 AATCATGAA-TTCAGACCACAACTC
1 AATCATGAACTT-AGACCACAACTC
*
78039808 AATCATGAACTTAGACCATAACTC
1 AATCATGAACTTAGACCACAACTC
78039832 A
1 A
78039833 TGAGTTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 21 0.91
25 2 0.09
ACGTcount: A:0.43, C:0.27, G:0.08, T:0.22
Consensus pattern (24 bp):
AATCATGAACTTAGACCACAACTC
Found at i:78046362 original size:46 final size:45
Alignment explanation
Indices: 78046309--78046478 Score: 123
Period size: 46 Copynumber: 3.7 Consensus size: 45
78046299 AGCATCCAAA
78046309 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTGAATGTCCGAG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGT-AATGTCCGAG
** * *
78046355 CTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTAA-T--G--TCCGAG
* * * ***
78046402 CTAGTTGAGTTGAGTCCGAGGTT-ACTTATGGATGCAAACACCCGAG
1 CTCGTTGAGTTGAGTCC-AAGTTCACTTATGGATG-TAATGTCCGAG
* * *
78046448 CTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCAAGTTCACTTATGG
78046479 GCGGGTTACA
Statistics
Matches: 94, Mismatches: 19, Indels: 22
0.70 0.14 0.16
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 6 0.06
46 48 0.51
47 21 0.22
48 5 0.05
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTAATGTCCGAG
Found at i:78054727 original size:19 final size:19
Alignment explanation
Indices: 78054703--78054741 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
78054693 TCATATAGCA
78054703 ATGACATCTAACTGAGCTG
1 ATGACATCTAACTGAGCTG
78054722 ATGACATCTAACTGAGCTG
1 ATGACATCTAACTGAGCTG
78054741 A
1 A
78054742 CTTAGATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (19 bp):
ATGACATCTAACTGAGCTG
Found at i:78061708 original size:27 final size:26
Alignment explanation
Indices: 78061677--78061854 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
78061667 TAAATTGTAC
78061677 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
78061704 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
78061730 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
78061758 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
78061786 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
78061813 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
78061840 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78061855 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:78061793 original size:82 final size:81
Alignment explanation
Indices: 78061678--78061833 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78061668 AAATTGTACA
*
78061678 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
78061742 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
78061759 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
78061824 TGCGAGTTGA
65 TGCGAATTGA
78061834 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78061845 original size:82 final size:81
Alignment explanation
Indices: 78061674--78061854 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
78061664 GATTAAATTG
*
78061674 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
78061739 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
78061755 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
78061819 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
78061837 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
78061855 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:78065727 original size:58 final size:58
Alignment explanation
Indices: 78065655--78065769 Score: 185
Period size: 58 Copynumber: 2.0 Consensus size: 58
78065645 GATCTTCAGG
* *
78065655 CCGTATGTGGATCGGTTCGTAGTTGTGTTTATTGATGACATCTTGGTCTATTCAAGAA
1 CCGTATGTGGATCGGTTCGTAGTGGTGTTCATTGATGACATCTTGGTCTATTCAAGAA
* * *
78065713 CCGTATTTGTATCGGTTCGTAGTGGTGTTCATTGATGACATTTTGGTCTATTCAAGA
1 CCGTATGTGGATCGGTTCGTAGTGGTGTTCATTGATGACATCTTGGTCTATTCAAGA
78065770 GACGAGACCG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.20, C:0.14, G:0.25, T:0.41
Consensus pattern (58 bp):
CCGTATGTGGATCGGTTCGTAGTGGTGTTCATTGATGACATCTTGGTCTATTCAAGAA
Found at i:78067310 original size:21 final size:21
Alignment explanation
Indices: 78067268--78067373 Score: 71
Period size: 22 Copynumber: 5.0 Consensus size: 21
78067258 TTTATTTACA
78067268 TATTTA-ATATTATA-ATCAATT
1 TATTTATATATTATATAT--ATT
*
78067289 TATTTATATATTATATCTATTT
1 TATTTATATATTATATATA-TT
*
78067311 TATTATATATATTCTA-ATATT
1 TATT-TATATATTATATATATT
* *
78067332 T-TATATAT-TTTTATATTATT
1 TATTTATATATTATATA-TATT
78067352 T-TTATATATTATTATATATATT
1 TATT-TATA-TATTATATATATT
78067374 ATTAATTCTA
Statistics
Matches: 69, Mismatches: 7, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
18 4 0.06
19 6 0.09
20 7 0.10
21 14 0.20
22 21 0.30
23 17 0.25
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (21 bp):
TATTTATATATTATATATATT
Found at i:78067323 original size:9 final size:9
Alignment explanation
Indices: 78067311--78067405 Score: 60
Period size: 9 Copynumber: 11.2 Consensus size: 9
78067301 ATATCTATTT
78067311 TATTATATA
1 TATTATATA
*
78067320 TATTCTA-A
1 TATTATATA
*
78067328 TATTTTATA
1 TATTATATA
*
78067337 TATT-TTTA
1 TATTATATA
78067345 TATTAT-T-
1 TATTATATA
78067352 T-TTATATA
1 TATTATATA
78067360 TTATTATATA
1 -TATTATATA
78067370 TATTAT-TA
1 TATTATATA
* *
78067378 -ATTCTATT
1 TATTATATA
* *
78067386 TTTTGTATA
1 TATTATATA
*
78067395 CATTATATA
1 TATTATATA
78067404 TA
1 TA
78067406 ATACAAAAAA
Statistics
Matches: 66, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
6 4 0.06
7 6 0.09
8 18 0.27
9 31 0.47
10 7 0.11
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (9 bp):
TATTATATA
Found at i:78067341 original size:31 final size:32
Alignment explanation
Indices: 78067293--78067377 Score: 88
Period size: 31 Copynumber: 2.7 Consensus size: 32
78067283 TCAATTTATT
* *
78067293 TATATATTATATCTATTTTATTATA-TATATTC
1 TATATATTTTATATATTTTATTATATTAT-TTC
*
78067325 TA-ATATTTTATATA-TTT-TTATATTATTTT
1 TATATATTTTATATATTTTATTATATTATTTC
*
78067354 TATATATTATTATATATATTATTA
1 TATATATT-TTATATATTTTATTA
78067378 ATTCTATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
29 9 0.20
30 11 0.25
31 17 0.39
32 4 0.09
33 3 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (32 bp):
TATATATTTTATATATTTTATTATATTATTTC
Found at i:78068619 original size:11 final size:11
Alignment explanation
Indices: 78068591--78068629 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
78068581 GGGATTGTGG
78068591 ATGTTATTTTT
1 ATGTTATTTTT
*
78068602 TTG-TATTTTT
1 ATGTTATTTTT
78068612 ATGTTATTTTT
1 ATGTTATTTTT
78068623 AATGTTA
1 -ATGTTA
78068630 AATTATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 9 0.38
11 9 0.38
12 6 0.25
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (11 bp):
ATGTTATTTTT
Found at i:78077004 original size:45 final size:45
Alignment explanation
Indices: 78076871--78077005 Score: 180
Period size: 45 Copynumber: 3.0 Consensus size: 45
78076861 ATACTCGATG
* * * * **
78076871 GAATCAGCACATAGCAACCACCTTCATAATTAATAGTACCCGGCG
1 GAATCAGCACACAGCAACCACCTTTATAATCAATGGTACCCGGTA
* * * *
78076916 GAATCAGCACACTGCAACCACCTTTACAATCAATGATAACCGGTA
1 GAATCAGCACACAGCAACCACCTTTATAATCAATGGTACCCGGTA
78076961 GAATCAGCACACAGCAACCACCTTTATAATCAATGGTACCCGGTA
1 GAATCAGCACACAGCAACCACCTTTATAATCAATGGTACCCGGTA
78077006 CACTAGTAGT
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 76 1.00
ACGTcount: A:0.36, C:0.29, G:0.15, T:0.20
Consensus pattern (45 bp):
GAATCAGCACACAGCAACCACCTTTATAATCAATGGTACCCGGTA
Found at i:78078977 original size:20 final size:21
Alignment explanation
Indices: 78078946--78078985 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
78078936 ACCTCAACTC
78078946 TCTCACTTTTTCCTTTCTTTT
1 TCTCACTTTTTCCTTTCTTTT
*
78078967 TCTCA-TTTTTCTTTTCTTT
1 TCTCACTTTTTCCTTTCTTT
78078986 CTCTTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.05, C:0.25, G:0.00, T:0.70
Consensus pattern (21 bp):
TCTCACTTTTTCCTTTCTTTT
Found at i:78082310 original size:19 final size:20
Alignment explanation
Indices: 78082282--78082327 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
78082272 ATGTGATGTA
*
78082282 AATTACATAATATATTAAAT
1 AATTAAATAATATATTAAAT
78082302 -ATTAAATAATATATTAAAT
1 AATTAAATAATATATTAAAT
78082321 AATTAAA
1 AATTAAA
78082328 AAATGAGCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTAAATAATATATTAAAT
Found at i:78091942 original size:13 final size:13
Alignment explanation
Indices: 78091924--78091951 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
78091914 TCTCCATACT
78091924 TGGTAATAGAGAA
1 TGGTAATAGAGAA
78091937 TGGTAATAGAGAA
1 TGGTAATAGAGAA
78091950 TG
1 TG
78091952 CATAATAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (13 bp):
TGGTAATAGAGAA
Found at i:78093266 original size:24 final size:23
Alignment explanation
Indices: 78093208--78093266 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
78093198 TTTCTTTCGC
78093208 TTTT-TCTTCTTTTGCAATTTCT
1 TTTTCTCTTCTTTTGCAATTTCT
* *
78093230 TTTTCAATC-TCTTTTTCACTTTCAT
1 TTTTC--TCTTCTTTTGCAATTTC-T
78093255 TTTTCTCTTCTT
1 TTTTCTCTTCTT
78093267 GTCTTTCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
22 4 0.13
23 2 0.07
24 16 0.53
25 8 0.27
ACGTcount: A:0.10, C:0.22, G:0.02, T:0.66
Consensus pattern (23 bp):
TTTTCTCTTCTTTTGCAATTTCT
Found at i:78094344 original size:81 final size:81
Alignment explanation
Indices: 78094251--78094513 Score: 481
Period size: 81 Copynumber: 3.2 Consensus size: 81
78094241 ATCACTTTCC
78094251 TTTTTTTTCAAATTTTTTTAACTACTAAATGCTAAATACAAAAGGAAAATTTGAATCCAAAATAA
1 TTTTTTTTCAAATTTTTTTAACTACTAAATGCTAAATACAAAAGGAAAATTTGAATCCAAAATAA
78094316 ACTAACTTTTCGAATT
66 ACTAACTTTTCGAATT
78094332 TTTTTTTTCAAATTTTTTTAACTACTAAATGCTAAATACAAAAGGAAAATTTGAATCCAAAATAA
1 TTTTTTTTCAAATTTTTTTAACTACTAAATGCTAAATACAAAAGGAAAATTTGAATCCAAAATAA
78094397 ACTAACTTTTCGAATT
66 ACTAACTTTTCGAATT
*
78094413 TTTTTTTTCAAATTTTTTTAACTACTAAATGCTAAATGCAAAAGGAAAATTTGAATCCAAAATAA
1 TTTTTTTTCAAATTTTTTTAACTACTAAATGCTAAATACAAAAGGAAAATTTGAATCCAAAATAA
**
78094478 ACTATTTTTTCGAATT
66 ACTAACTTTTCGAATT
* *
78094494 TTTTTTTTTAATTTTTTTTA
1 TTTTTTTTCAAATTTTTTTA
78094514 CAATTTCGTA
Statistics
Matches: 177, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 177 1.00
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (81 bp):
TTTTTTTTCAAATTTTTTTAACTACTAAATGCTAAATACAAAAGGAAAATTTGAATCCAAAATAA
ACTAACTTTTCGAATT
Found at i:78095990 original size:20 final size:19
Alignment explanation
Indices: 78095952--78095992 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
78095942 ATTAAGCTGG
**
78095952 AAACGAGCTGAATTGAACT
1 AAACGAGCTGAATCAAACT
78095971 AAACGAGCTGGAATCAAACT
1 AAACGAGCT-GAATCAAACT
78095991 AA
1 AA
78095993 TTCAACGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (19 bp):
AAACGAGCTGAATCAAACT
Found at i:78100263 original size:53 final size:53
Alignment explanation
Indices: 78100183--78100287 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 53
78100173 GTTCCACCGT
*
78100183 TTCACAATGGATAAAAAGGCCCATCATTGATGTCAAAACAAAAACATAAAGCA
1 TTCACAATGGATAAAAAGGCCCATCATTGACGTCAAAACAAAAACATAAAGCA
*
78100236 TTCACAATGGATAAAAAGGCCCATCATTGACGTCAAAACAGAAACATAAAGC
1 TTCACAATGGATAAAAAGGCCCATCATTGACGTCAAAACAAAAACATAAAGC
78100288 GTTCGGGAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (53 bp):
TTCACAATGGATAAAAAGGCCCATCATTGACGTCAAAACAAAAACATAAAGCA
Found at i:78103976 original size:13 final size:13
Alignment explanation
Indices: 78103958--78103982 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78103948 ATGTACCTGG
78103958 AACAAATAAATTC
1 AACAAATAAATTC
78103971 AACAAATAAATT
1 AACAAATAAATT
78103983 TTATTTTAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (13 bp):
AACAAATAAATTC
Found at i:78104161 original size:23 final size:23
Alignment explanation
Indices: 78104112--78104164 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
78104102 AAACCTGCAC
78104112 TTAAAATGTTCAGCTTAAGACACA
1 TTAAAATGTTCAGCTT-AGACACA
* *
78104136 TTAAAATGTTGTAGCTT-GACATA
1 TTAAAATGTT-CAGCTTAGACACA
78104159 TTAAAA
1 TTAAAA
78104165 ACATGTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 11 0.42
24 10 0.38
25 5 0.19
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (23 bp):
TTAAAATGTTCAGCTTAGACACA
Found at i:78107427 original size:20 final size:20
Alignment explanation
Indices: 78107404--78107441 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
78107394 GTGCCTTCAT
78107404 TACACCTCGATGCCCTTGTA
1 TACACCTCGATGCCCTTGTA
* *
78107424 TACACTTCGATGTCCTTG
1 TACACCTCGATGCCCTTG
78107442 ATTGCACTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.32, G:0.16, T:0.34
Consensus pattern (20 bp):
TACACCTCGATGCCCTTGTA
Found at i:78107551 original size:40 final size:40
Alignment explanation
Indices: 78107446--78107582 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 40
78107436 TCCTTGATTG
* *
78107446 CACTTTGGTGGTCC-TGTTTGCACAACTATGCCCCTGTAAA
1 CACTTTGGT-GTCCTTGTTTGCACAATTATGCCCTTGTAAA
* * *
78107486 CACTTTGGTGTCCCTGTTTGCACAATTGTGCCCTTGTCAA
1 CACTTTGGTGTCCTTGTTTGCACAATTATGCCCTTGTAAA
* *
78107526 CACTTTGGTGTCCTTGTTTGCACAATTTTTCCCTTGTAAA
1 CACTTTGGTGTCCTTGTTTGCACAATTATGCCCTTGTAAA
* * *
78107566 AACTTCGGTGCCCTTGT
1 CACTTTGGTGTCCTTGT
78107583 AAAAATATAG
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 4 0.05
40 81 0.95
ACGTcount: A:0.17, C:0.26, G:0.19, T:0.38
Consensus pattern (40 bp):
CACTTTGGTGTCCTTGTTTGCACAATTATGCCCTTGTAAA
Found at i:78113620 original size:18 final size:18
Alignment explanation
Indices: 78113599--78113638 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
78113589 GATTGAGAGT
* * *
78113599 GAAAAGGAATGTGAAATA
1 GAAAAGAAAAGTGAAAAA
78113617 GAAAAGAAAAGTGAAAAA
1 GAAAAGAAAAGTGAAAAA
78113635 GAAA
1 GAAA
78113639 TTGAAGAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.10
Consensus pattern (18 bp):
GAAAAGAAAAGTGAAAAA
Found at i:78122677 original size:27 final size:28
Alignment explanation
Indices: 78122641--78122694 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
78122631 TCAAAATTCA
*
78122641 CACTTTAATT-TTAAAATAATTAATTTG
1 CACTTAAATTATTAAAATAATTAATTTG
*
78122668 CACTTAAATTATTAAAATATTTAATTT
1 CACTTAAATTATTAAAATAATTAATTT
78122695 TAGTTATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (28 bp):
CACTTAAATTATTAAAATAATTAATTTG
Found at i:78125769 original size:12 final size:12
Alignment explanation
Indices: 78125749--78125790 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
78125739 GAGGTCCCAG
*
78125749 AGGGTGTACAGT
1 AGGGGGTACAGT
78125761 AGGGGGTACAG-
1 AGGGGGTACAGT
* *
78125772 AGAGGGTATAGT
1 AGGGGGTACAGT
78125784 AGGGGGT
1 AGGGGGT
78125791 CGTGCCACAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.26, C:0.05, G:0.50, T:0.19
Consensus pattern (12 bp):
AGGGGGTACAGT
Found at i:78127765 original size:32 final size:31
Alignment explanation
Indices: 78127721--78127797 Score: 100
Period size: 32 Copynumber: 2.5 Consensus size: 31
78127711 CTTGAAGAGT
** *
78127721 CTTTGGTGTGAACACTTGGACTTGGACAGTC
1 CTTTGGTGTGAACACCAGGAATTGGACAGTC
*
78127752 CTTTGGTTGTGAACACCAGGAATTGGACGGTC
1 CTTTGG-TGTGAACACCAGGAATTGGACAGTC
*
78127784 CATTGGTGTGAACA
1 CTTTGGTGTGAACA
78127798 GCAGTAGCTG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 14 0.35
32 26 0.65
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (31 bp):
CTTTGGTGTGAACACCAGGAATTGGACAGTC
Found at i:78136511 original size:81 final size:81
Alignment explanation
Indices: 78136398--78136704 Score: 371
Period size: 81 Copynumber: 3.8 Consensus size: 81
78136388 GGGTATAACA
* * * *
78136398 GTCATTTTACCTTATAGGGGTATTTTGATCATTTTACCCTATAGGGGTATTTCGGTCATTCTACC
1 GTCATTTTACCCTATAAGGGTATTTTGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACC
* *
78136463 TTATAAAGGTATTTCG
66 TTATGAGGGTATTTCG
** * * * * *
78136479 GTCATTTTACCCTATGGGGGTCTTTTGGTCATTTTACCCTATGAGGGAATTTTGGTCATTTTACC
1 GTCATTTTACCCTATAAGGGTATTTTGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACC
*
78136544 TTATGAGGGTATTTTG
66 TTATGAGGGTATTTCG
* ** * * *
78136560 GTCATTTTACCCAACGAGGGTATTTTGGTCACTTTACCCTATGGGGGTATTTCAGTCATTTTACC
1 GTCATTTTACCCTATAAGGGTATTTTGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACC
* *
78136625 CTATGGGGGTATTTCG
66 TTATGAGGGTATTTCG
* ** **
78136641 ATCATTTTACCCTATAAGGGTATTTTGATCATTTTACAATATGGGGGTATTTTAGTCATTTTAC
1 GTCATTTTACCCTATAAGGGTATTTTGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTAC
78136705 TCTATATGGG
Statistics
Matches: 193, Mismatches: 33, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 193 1.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCCTATAAGGGTATTTTGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACC
TTATGAGGGTATTTCG
Found at i:78136715 original size:27 final size:27
Alignment explanation
Indices: 78136398--78136715 Score: 329
Period size: 27 Copynumber: 11.8 Consensus size: 27
78136388 GGGTATAACA
*
78136398 GTCATTTTACCTTATAGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTTG
* *
78136425 ATCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTTG
* * ** *
78136452 GTCATTCTACCTTATAAAGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTTG
* *
78136479 GTCATTTTACCCTATGGGGGTCTTTTG
1 GTCATTTTACCCTATAGGGGTATTTTG
*
78136506 GTCATTTTACCCTAT-GAGGGAATTTTG
1 GTCATTTTACCCTATAG-GGGTATTTTG
*
78136533 GTCATTTTACCTTAT-GAGGGTATTTTG
1 GTCATTTTACCCTATAG-GGGTATTTTG
78136560 GTCATTTTACCC-A-ACGAGGGTATTTTG
1 GTCATTTTACCCTATA-G-GGGTATTTTG
* * **
78136587 GTCACTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTTG
* *
78136614 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTTG
* *
78136641 ATCATTTTACCCTATAAGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTTG
* ** * *
78136668 ATCATTTTACAATATGGGGGTATTTTA
1 GTCATTTTACCCTATAGGGGTATTTTG
* *
78136695 GTCATTTTACTCTATATGGGT
1 GTCATTTTACCCTATAGGGGT
78136716 CTTGGTGTAG
Statistics
Matches: 246, Mismatches: 40, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 242 0.98
28 2 0.01
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTTG
Found at i:78145885 original size:27 final size:27
Alignment explanation
Indices: 78145849--78146043 Score: 264
Period size: 27 Copynumber: 7.2 Consensus size: 27
78145839 AGAGGTCAAT
*
78145849 AAATGATCGAATTACCCCTACAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
*
78145876 AAATGGTCGAATTACCCCCACAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
*
78145903 AAATGAGCGAATTACCCCCACAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
*
78145930 AAATGATTGAATTACCCCCACAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
* *
78145957 AAATGACCGAATTACCCCCACAAGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
* * * * *
78145984 AAATGAACGAACTACTCCTATAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
* * *
78146011 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
78146038 AAATGA
1 AAATGA
78146044 CTGTTATACC
Statistics
Matches: 149, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.39, C:0.24, G:0.19, T:0.18
Consensus pattern (27 bp):
AAATGATCGAATTACCCCCACAGGGTA
Found at i:78146450 original size:28 final size:28
Alignment explanation
Indices: 78146409--78146488 Score: 142
Period size: 28 Copynumber: 2.9 Consensus size: 28
78146399 ACTGTATCGA
78146409 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
* *
78146437 TACTGTATTAGGCTAAGACCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
78146465 TACTGTATTGGGCTAAGGCCCACA
1 TACTGTATTGGGCTAAGGCCCACA
78146489 CTATACTGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACATTGT
Found at i:78147511 original size:21 final size:21
Alignment explanation
Indices: 78147485--78147552 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
78147475 AAAGTACAAA
*
78147485 CAGGGGCACATATGTGCAATT
1 CAGGGGCACATATGTACAATT
* ** * *
78147506 CAGGGGTACCGAAGTACAA-A
1 CAGGGGCACATATGTACAATT
*
78147526 CAAGGGCACATATGTACAATT
1 CAGGGGCACATATGTACAATT
78147547 CAGGGG
1 CAGGGG
78147553 TACCGAAATA
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 14 0.42
21 19 0.58
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (21 bp):
CAGGGGCACATATGTACAATT
Found at i:78147527 original size:41 final size:41
Alignment explanation
Indices: 78147470--78147585 Score: 187
Period size: 41 Copynumber: 2.8 Consensus size: 41
78147460 ACATCTAGGA
* *
78147470 GTACCAAAGTACAAACAGGGGCACATATGTGCAATTCAGGG
1 GTACCGAAGTACAAACAAGGGCACATATGTGCAATTCAGGG
*
78147511 GTACCGAAGTACAAACAAGGGCACATATGTACAATTCAGGG
1 GTACCGAAGTACAAACAAGGGCACATATGTGCAATTCAGGG
* *
78147552 GTACCGAAATACAAACAAGGGCACGTATGTGCAA
1 GTACCGAAGTACAAACAAGGGCACATATGTGCAA
78147586 ATCATCATTA
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.39, C:0.20, G:0.25, T:0.16
Consensus pattern (41 bp):
GTACCGAAGTACAAACAAGGGCACATATGTGCAATTCAGGG
Found at i:78147544 original size:20 final size:20
Alignment explanation
Indices: 78147478--78147544 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
78147468 GAGTACCAAA
78147478 GTACAAACAGGGGCACATAT
1 GTACAAACAGGGGCACATAT
* * * ** *
78147498 GTGCAATTCAGGGGTACCGAA
1 GTACAA-ACAGGGGCACATAT
*
78147519 GTACAAACAAGGGCACATAT
1 GTACAAACAGGGGCACATAT
78147539 GTACAA
1 GTACAA
78147545 TTCAGGGGTA
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.16
Consensus pattern (20 bp):
GTACAAACAGGGGCACATAT
Found at i:78154584 original size:5 final size:5
Alignment explanation
Indices: 78154553--78154597 Score: 54
Period size: 5 Copynumber: 8.4 Consensus size: 5
78154543 AGTACATATG
*
78154553 TTCTT CTTCTT TTTTT GTTCTTT TTCTT TTCTT TTCTT TTCTT TT
1 TTCTT -TTCTT TTCTT -TTC-TT TTCTT TTCTT TTCTT TTCTT TT
78154598 TCACGAGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
5 23 0.66
6 10 0.29
7 2 0.06
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (5 bp):
TTCTT
Found at i:78154599 original size:11 final size:12
Alignment explanation
Indices: 78154553--78154599 Score: 57
Period size: 11 Copynumber: 4.2 Consensus size: 12
78154543 AGTACATATG
78154553 TTCTTCTTCTTT
1 TTCTTCTTCTTT
*
78154565 TT-TTGTTCTTT
1 TTCTTCTTCTTT
78154576 TTCTT-TTC-TT
1 TTCTTCTTCTTT
78154586 TTCTT-TTCTTT
1 TTCTTCTTCTTT
78154597 TTC
1 TTC
78154600 ACGAGCATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
10 10 0.31
11 18 0.56
12 4 0.12
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (12 bp):
TTCTTCTTCTTT
Found at i:78160963 original size:15 final size:15
Alignment explanation
Indices: 78160943--78161027 Score: 65
Period size: 15 Copynumber: 5.7 Consensus size: 15
78160933 TTTTCACTCA
78160943 CTTTTTCTTTTTCAT
1 CTTTTTCTTTTTCAT
78160958 CTTTTTC-TTTTC-T
1 CTTTTTCTTTTTCAT
78160971 CGTTTTT-TTTTTCAT
1 C-TTTTTCTTTTTCAT
78160986 -TTTCATT-TTTTTCAT
1 CTTT--TTCTTTTTCAT
* *
78161001 TTTCTTTCTTTTT-TT
1 CTT-TTTCTTTTTCAT
78161016 CATTTTTCTTTT
1 C-TTTTTCTTTT
78161028 CTTTTGTATT
Statistics
Matches: 59, Mismatches: 2, Indels: 18
0.75 0.03 0.23
Matches are distributed among these distances:
13 5 0.08
14 15 0.25
15 29 0.49
16 9 0.15
17 1 0.02
ACGTcount: A:0.06, C:0.16, G:0.01, T:0.76
Consensus pattern (15 bp):
CTTTTTCTTTTTCAT
Found at i:78160970 original size:20 final size:19
Alignment explanation
Indices: 78160945--78161032 Score: 90
Period size: 20 Copynumber: 4.5 Consensus size: 19
78160935 TTCACTCACT
*
78160945 TTTTCTTTTTCATCTTTTTC
1 TTTTCTTTTT-TTCTTTTTC
*
78160965 TTTTCTCGTTTTT-TTTTTC
1 TTTTCT-TTTTTTCTTTTTC
*
78160984 ATTTTCATTTTTTTCATTTTC
1 -TTTTC-TTTTTTTCTTTTTC
78161005 -TTTCTTTTTTTCATTTTTC
1 TTTTCTTTTTTTC-TTTTTC
78161024 TTTTCTTTT
1 TTTTCTTTT
78161033 GTATTTTCGC
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
18 8 0.14
19 15 0.26
20 25 0.44
21 9 0.16
ACGTcount: A:0.06, C:0.16, G:0.01, T:0.77
Consensus pattern (19 bp):
TTTTCTTTTTTTCTTTTTC
Found at i:78160988 original size:9 final size:9
Alignment explanation
Indices: 78160985--78161022 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
78160975 TTTTTTTTCA
78160985 TTTTCATTT
1 TTTTCATTT
78160994 TTTTCATTT
1 TTTTCATTT
78161003 TCTTTC-TTT
1 T-TTTCATTT
78161012 TTTTCATTT
1 TTTTCATTT
78161021 TT
1 TT
78161023 CTTTTCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 4 0.15
9 19 0.70
10 4 0.15
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTCATTT
Found at i:78160989 original size:34 final size:32
Alignment explanation
Indices: 78160944--78161032 Score: 103
Period size: 34 Copynumber: 2.8 Consensus size: 32
78160934 TTTCACTCAC
* *
78160944 TTTTTCTTTTTCATCTTTTTCTTTTCTCGTTTTT
1 TTTTTCATTTTCATCTTTTTCTTTTCT--TTCTT
*
78160978 TTTTTCATTTTCATTTTTTTCATTTTCTTTCTT
1 TTTTTCATTTTCATCTTTTTC-TTTTCTTTCTT
78161011 TTTTTCATTTT--TC-TTTTCTTTT
1 TTTTTCATTTTCATCTTTTTCTTTT
78161033 GTATTTTCGC
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
29 4 0.08
30 5 0.10
31 1 0.02
33 15 0.30
34 19 0.38
35 6 0.12
ACGTcount: A:0.06, C:0.16, G:0.01, T:0.78
Consensus pattern (32 bp):
TTTTTCATTTTCATCTTTTTCTTTTCTTTCTT
Found at i:78161022 original size:19 final size:19
Alignment explanation
Indices: 78160945--78161032 Score: 83
Period size: 19 Copynumber: 4.5 Consensus size: 19
78160935 TTCACTCACT
* *
78160945 TTTTCTTTTTCATCTTTTTC
1 TTTTCTTTTT-TTCATTTTC
78160965 TTTTCTCGTTTTTT--TTTTC
1 TTTTCT--TTTTTTCATTTTC
78160984 ATTTTCATTTTTTTCATTTTC
1 -TTTTC-TTTTTTTCATTTTC
78161005 -TTTCTTTTTTTCATTTTTC
1 TTTTCTTTTTTTCA-TTTTC
78161024 TTTTCTTTT
1 TTTTCTTTT
78161033 GTATTTTCGC
Statistics
Matches: 59, Mismatches: 1, Indels: 16
0.78 0.01 0.21
Matches are distributed among these distances:
18 9 0.15
19 20 0.34
20 19 0.32
21 7 0.12
22 4 0.07
ACGTcount: A:0.06, C:0.16, G:0.01, T:0.77
Consensus pattern (19 bp):
TTTTCTTTTTTTCATTTTC
Found at i:78161039 original size:24 final size:26
Alignment explanation
Indices: 78160984--78161040 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 26
78160974 TTTTTTTTTC
78160984 ATTTTCATTTTTTTCATTTTCTTTCTT
1 ATTTTCA-TTTTTTCATTTTCTTTCTT
*
78161011 TTTTTCA-TTTTTC-TTTTCTTT-TGT
1 ATTTTCATTTTTTCATTTTCTTTCT-T
78161035 ATTTTC
1 ATTTTC
78161041 GCTCTTTTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 1 0.04
24 14 0.52
25 6 0.22
27 6 0.22
ACGTcount: A:0.09, C:0.14, G:0.02, T:0.75
Consensus pattern (26 bp):
ATTTTCATTTTTTCATTTTCTTTCTT
Found at i:78163579 original size:23 final size:23
Alignment explanation
Indices: 78163546--78163607 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
78163536 CAGTTTTGGG
* **
78163546 TTTGTTACGAAATGGTAATGTGA
1 TTTGGTACGAAATGGTAATACGA
*
78163569 TTTGGTTCGAAATGGTAATACGA
1 TTTGGTACGAAATGGTAATACGA
78163592 TTTGGTACGAAATGGT
1 TTTGGTACGAAATGGT
78163608 TATGGTTCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.29, C:0.06, G:0.27, T:0.37
Consensus pattern (23 bp):
TTTGGTACGAAATGGTAATACGA
Found at i:78169036 original size:33 final size:33
Alignment explanation
Indices: 78168999--78169094 Score: 102
Period size: 33 Copynumber: 3.2 Consensus size: 33
78168989 TGAGTTAATG
78168999 CATGACTTAATTTAATGATGCAAACTTAACTAA
1 CATGACTTAATTTAATGATGCAAACTTAACTAA
* *
78169032 CATGA---AAGTT-A-CAT---AA-TTAAACTAA
1 CATGACTTAATTTAATGATGCAAACTT-AACTAA
78169057 CATGACTTAATTTAATGATGCAAACTTAACTAA
1 CATGACTTAATTTAATGATGCAAACTTAACTAA
78169090 CATGA
1 CATGA
78169095 AAGTTACATA
Statistics
Matches: 49, Mismatches: 4, Indels: 20
0.67 0.05 0.27
Matches are distributed among these distances:
24 2 0.04
25 13 0.27
28 6 0.12
29 2 0.04
30 6 0.12
33 18 0.37
34 2 0.04
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (33 bp):
CATGACTTAATTTAATGATGCAAACTTAACTAA
Found at i:78169500 original size:28 final size:29
Alignment explanation
Indices: 78169439--78169500 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
78169429 AATAAAAAAA
* *
78169439 ATGTCTGATTTTATTATTAAGTGTTTAAT
1 ATGTCTGATTTTAATATCAAGTGTTTAAT
* * *
78169468 GTGTCTTATTTTAATA-CAAGTTTTTAAT
1 ATGTCTGATTTTAATATCAAGTGTTTAAT
78169496 ATGTC
1 ATGTC
78169501 ATAGCCTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.27, C:0.06, G:0.13, T:0.53
Consensus pattern (29 bp):
ATGTCTGATTTTAATATCAAGTGTTTAAT
Found at i:78169510 original size:28 final size:28
Alignment explanation
Indices: 78169479--78169561 Score: 96
Period size: 28 Copynumber: 3.0 Consensus size: 28
78169469 TGTCTTATTT
*
78169479 TAATACA-AGTTTTTAATATGTCATAGCC
1 TAATACATA-TTTTTAATATGTCCTAGCC
* * *
78169507 TAATACATATTATTAATTTGTCCTAGAC
1 TAATACATATTTTTAATATGTCCTAGCC
* *
78169535 TAAAACATATTTTTATTATGTCCTAGC
1 TAATACATATTTTTAATATGTCCTAGC
78169562 TACTGCCGAT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.42
Consensus pattern (28 bp):
TAATACATATTTTTAATATGTCCTAGCC
Found at i:78175038 original size:20 final size:19
Alignment explanation
Indices: 78175015--78175068 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
78175005 AGCTTGTTTC
*
78175015 AGCTCCAATTAGCTCATTTG
1 AGCT-CAATTAGCTCATTGG
78175035 AGCTCAATTCAGCTCATTGG
1 AGCTCAATT-AGCTCATTGG
78175055 AGCTCAATTTAGCT
1 AGCTCAA-TTAGCT
78175069 TTCTTTGAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 5 0.16
20 24 0.77
21 2 0.06
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (19 bp):
AGCTCAATTAGCTCATTGG
Found at i:78177469 original size:18 final size:18
Alignment explanation
Indices: 78177429--78177470 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
78177419 TATGTGAAAA
*
78177429 AAAAAGAAAAAGAAATTG
1 AAAAAGAAAAAGAAATCG
*
78177447 CAAAAGAAAAAGAAATCG
1 AAAAAGAAAAAGAAATCG
78177465 AAAAAG
1 AAAAAG
78177471 TGAGAGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.71, C:0.05, G:0.17, T:0.07
Consensus pattern (18 bp):
AAAAAGAAAAAGAAATCG
Found at i:78177531 original size:18 final size:18
Alignment explanation
Indices: 78177500--78177534 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
78177490 AGAAAAGAAA
78177500 ATTGAAAAATAAATTGAG
1 ATTGAAAAATAAATTGAG
78177518 ATTGAGAAAA-AAATTGA
1 ATTGA-AAAATAAATTGA
78177535 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.26
Consensus pattern (18 bp):
ATTGAAAAATAAATTGAG
Found at i:78177543 original size:16 final size:17
Alignment explanation
Indices: 78177522--78177560 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
78177512 ATTGAGATTG
78177522 AGAAAAAAAT-TGAAAA
1 AGAAAAAAATATGAAAA
*
78177538 AGAAAAAGATGATGAAAA
1 AGAAAAAAAT-ATGAAAA
78177556 AGAAA
1 AGAAA
78177561 CGAAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
18 11 0.55
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.10
Consensus pattern (17 bp):
AGAAAAAAATATGAAAA
Found at i:78179334 original size:20 final size:20
Alignment explanation
Indices: 78179311--78179374 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
78179301 CAGCCCCTTT
*
78179311 AGCTCGTTTCAGCTCCAA-TC
1 AGCTCATTTCAGCT-CAATTC
*
78179331 AGCTCATTTGAGCTCAATTC
1 AGCTCATTTCAGCTCAATTC
** *
78179351 AGCTCATTGGAGCTCAATTT
1 AGCTCATTTCAGCTCAATTC
78179371 AGCT
1 AGCT
78179375 TTCTTTGAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
19 3 0.08
20 36 0.92
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (20 bp):
AGCTCATTTCAGCTCAATTC
Found at i:78184162 original size:14 final size:14
Alignment explanation
Indices: 78184143--78184169 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
78184133 TAAATTGGGC
78184143 AGATTCATGCATGT
1 AGATTCATGCATGT
78184157 AGATTCATGCATG
1 AGATTCATGCATG
78184170 GAGAGATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:78194821 original size:17 final size:18
Alignment explanation
Indices: 78194799--78194838 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
78194789 ATGAGATTTC
78194799 AAAAAC-AAAAGAGAGTG
1 AAAAACAAAAAGAGAGTG
*
78194816 AAAAACAAAAAGAGATTG
1 AAAAACAAAAAGAGAGTG
78194834 AAAAA
1 AAAAA
78194839 GAAATTGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.70, C:0.05, G:0.17, T:0.07
Consensus pattern (18 bp):
AAAAACAAAAAGAGAGTG
Found at i:78194858 original size:24 final size:21
Alignment explanation
Indices: 78194824--78194866 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 21
78194814 TGAAAAACAA
78194824 AAAGAGATTGAAAAAGAAATTG
1 AAAGAGATTG-AAAAGAAATTG
78194846 AAAGAGAAGTTGAAAAGAAAT
1 AAAGAG-A-TTGAAAAGAAAT
78194867 CGAGTGAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 10 0.53
24 3 0.16
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.16
Consensus pattern (21 bp):
AAAGAGATTGAAAAGAAATTG
Found at i:78197140 original size:14 final size:14
Alignment explanation
Indices: 78197121--78197147 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
78197111 TACATTGGGC
78197121 AGATTCATGCATGT
1 AGATTCATGCATGT
78197135 AGATTCATGCATG
1 AGATTCATGCATG
78197148 GGGAGATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:78198388 original size:27 final size:28
Alignment explanation
Indices: 78198349--78198402 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
78198339 AATGTGTTTT
*
78198349 ATTTTAATGCATGTTATTAATG-TGTCA
1 ATTTTAATACATGTTATTAATGATGTCA
* *
78198376 ATTTTATTACATGTTTTTAATGATGTC
1 ATTTTAATACATGTTATTAATGATGTC
78198403 CAAGTCCAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.28, C:0.07, G:0.13, T:0.52
Consensus pattern (28 bp):
ATTTTAATACATGTTATTAATGATGTCA
Found at i:78199691 original size:39 final size:39
Alignment explanation
Indices: 78199635--78199712 Score: 120
Period size: 39 Copynumber: 2.0 Consensus size: 39
78199625 GACTTATCAA
*
78199635 AAGTGTTTTAAGAATAGGATAGGTGATGGTTCGACTAAG
1 AAGTGTTTTAAGAATAGGATAGGTGATGGCTCGACTAAG
* * *
78199674 AAGTGTTTTAGGGATAGGATAGGTGATGGCTCGGCTAAG
1 AAGTGTTTTAAGAATAGGATAGGTGATGGCTCGACTAAG
78199713 GATAGAAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.29, C:0.06, G:0.35, T:0.29
Consensus pattern (39 bp):
AAGTGTTTTAAGAATAGGATAGGTGATGGCTCGACTAAG
Found at i:78206513 original size:35 final size:35
Alignment explanation
Indices: 78206451--78206536 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
78206441 ATTTTATTTG
*
78206451 TTTA-ATTATATAATTAATGATATTTAAA-TATAA
1 TTTATATTATATAATTAATGATACTTAAATTATAA
*
78206484 TTTATATTATATGAATTTATGATACTTAAATTATAA
1 TTTATATTATAT-AATTAATGATACTTAAATTATAA
* *
78206520 -TGATATTATATTATTAA
1 TTTATATTATATAATTAA
78206537 ATAAATCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
33 4 0.09
34 11 0.24
35 25 0.56
36 5 0.11
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (35 bp):
TTTATATTATATAATTAATGATACTTAAATTATAA
Found at i:78207854 original size:6 final size:6
Alignment explanation
Indices: 78207837--78207885 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
78207827 ATGTGAGGTA
* * * * *
78207837 AGTATT AATATT AGTATT AGTAAT AGTATT ATTATT ATTATT ATTATT
1 AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT
78207885 A
1 A
78207886 AGATGAGTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (6 bp):
AGTATT
Found at i:78207854 original size:12 final size:12
Alignment explanation
Indices: 78207837--78207885 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
78207827 ATGTGAGGTA
*
78207837 AGTATTAATATT
1 AGTATTATTATT
* *
78207849 AGTATTAGTAAT
1 AGTATTATTATT
78207861 AGTATTATTATT
1 AGTATTATTATT
*
78207873 ATTATTATTATT
1 AGTATTATTATT
78207885 A
1 A
78207886 AGATGAGTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (12 bp):
AGTATTATTATT
Found at i:78213913 original size:35 final size:35
Alignment explanation
Indices: 78213851--78213936 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
78213841 ATTTTATTTG
*
78213851 TTTA-ATTATATAATTAATGATATTTAAA-TATAA
1 TTTATATTATATAATTAATGATAATTAAATTATAA
*
78213884 TTTATATTATATGAATTTATGATAATTAAATTATAA
1 TTTATATTATAT-AATTAATGATAATTAAATTATAA
* *
78213920 -TGATATTATATTATTAA
1 TTTATATTATATAATTAA
78213937 ATAAATCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
33 4 0.09
34 11 0.24
35 25 0.56
36 5 0.11
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (35 bp):
TTTATATTATATAATTAATGATAATTAAATTATAA
Found at i:78213922 original size:25 final size:23
Alignment explanation
Indices: 78213878--78213938 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
78213868 TGATATTTAA
*
78213878 ATATAATTTATATTATATGA-ATTT
1 ATATAA-TTAAATTATATGATA-TT
78213902 ATGATAATTAAATTATAATGATATT
1 AT-ATAATTAAATTAT-ATGATATT
*
78213927 ATATTATTAAAT
1 ATATAATTAAAT
78213939 AAATCAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 19 0.59
25 12 0.38
26 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (23 bp):
ATATAATTAAATTATATGATATT
Found at i:78214067 original size:17 final size:18
Alignment explanation
Indices: 78214047--78214084 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
78214037 TATAAGATAT
*
78214047 TTATTATTTACTATT-AG
1 TTATTAGTTACTATTAAG
*
78214064 TTATTAGTTATTATTAAG
1 TTATTAGTTACTATTAAG
78214082 TTA
1 TTA
78214085 AAAGATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (18 bp):
TTATTAGTTACTATTAAG
Found at i:78215461 original size:24 final size:27
Alignment explanation
Indices: 78215424--78215487 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
78215414 AATTGCGGAT
*
78215424 TAATTATTG-ATTGAAAG-GTG-GAAA
1 TAATGATTGAATTGAAAGTGTGAGAAA
78215448 -AATGATTGAATTGAAAGTGTGAGAAA
1 TAATGATTGAATTGAAAGTGTGAGAAA
**
78215474 TTGTGATTGAATTG
1 TAATGATTGAATTG
78215488 GGATTATATG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 7 0.21
24 8 0.24
25 3 0.09
26 4 0.12
27 11 0.33
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.34
Consensus pattern (27 bp):
TAATGATTGAATTGAAAGTGTGAGAAA
Found at i:78226637 original size:17 final size:18
Alignment explanation
Indices: 78226615--78226656 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
78226605 TATCATATCA
*
78226615 CTCATTTC-TTTTGCACT
1 CTCATTTCTTTTTGCAAT
78226632 CTCATTTCTTTTTGCAAT
1 CTCATTTCTTTTTGCAAT
78226650 CTCATTT
1 CTCATTT
78226657 TCAATTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.14, C:0.26, G:0.05, T:0.55
Consensus pattern (18 bp):
CTCATTTCTTTTTGCAAT
Found at i:78227997 original size:40 final size:40
Alignment explanation
Indices: 78227953--78228030 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
78227943 TAAATAAAAG
* *
78227953 AAAGTCTAACAACTCAATTACTAACTAACATGAGTTTAAT
1 AAAGTCCAACAACTCAATTACTAAATAACATGAGTTTAAT
* * * *
78227993 AAAGTCCAGCAACTCATTTATTAAATAAGATGAGTTTA
1 AAAGTCCAACAACTCAATTACTAAATAACATGAGTTTA
78228031 TTTAAATTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (40 bp):
AAAGTCCAACAACTCAATTACTAAATAACATGAGTTTAAT
Done.