Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 258 of 313
Found at i:79140700 original size:86 final size:86
Alignment explanation
Indices: 79140523--79140715 Score: 252
Period size: 86 Copynumber: 2.3 Consensus size: 86
79140513 TTAATAGCTT
* * * *
79140523 TTTTTTTGAAAAAG-TTTGAGAGTCATTTTGGTGTATTTTGAAAGTTCAAGTACCCAATTGAGTG
1 TTTTTTTAAAAAAGATTTGAGGGTCATTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTG
* *
79140587 GAAAAAAAAGTAGGGGCTTAA
66 GAAAAAAAAGCAGGAGCTTAA
79140608 TTTTTTTAAAAAAGATTTGAGGGT-ATTTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGT
1 TTTTTTTAAAAAAGATTTGAGGGTCA-TTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGT
79140672 -GAAAAAAAA-CAGGAGCTTAA
65 GGAAAAAAAAGCAGGAGCTTAA
**
79140692 TTGCTTTTTTGAAAA-ATTTGAGGG
1 TT--TTTTTAAAAAAGATTTGAGGG
79140716 CTTTTTACAC
Statistics
Matches: 96, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
84 11 0.11
85 32 0.33
86 53 0.55
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (86 bp):
TTTTTTTAAAAAAGATTTGAGGGTCATTTTGATGCATTTTGAAAGTTCAAGTACCCAATTGAGTG
GAAAAAAAAGCAGGAGCTTAA
Found at i:79145412 original size:11 final size:11
Alignment explanation
Indices: 79145391--79145426 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
79145381 AACCAACTAC
79145391 AATTAAAATTTA
1 AATT-AAATTTA
79145403 AATTAAATTTA
1 AATTAAATTTA
*
79145414 AAATAAATTTA
1 AATTAAATTTA
79145425 AA
1 AA
79145427 CAAGAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AATTAAATTTA
Found at i:79147412 original size:31 final size:31
Alignment explanation
Indices: 79147377--79147437 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
79147367 CTAAGTCACT
79147377 CTTTCGGTCTCTACCTAAGCATACAGATACC
1 CTTTCGGTCTCTACCTAAGCATACAGATACC
*
79147408 CTTTCGGTCTCTACCTAAGCATACATATAC
1 CTTTCGGTCTCTACCTAAGCATACAGATAC
79147438 TTTTGGATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.31
Consensus pattern (31 bp):
CTTTCGGTCTCTACCTAAGCATACAGATACC
Found at i:79166959 original size:8 final size:7
Alignment explanation
Indices: 79166940--79166983 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
79166930 TGAGTCGAAA
79166940 AAAATATG
1 AAAA-ATG
*
79166948 AAAATTG
1 AAAAATG
79166955 AAAAATG
1 AAAAATG
79166962 AAAAATG
1 AAAAATG
*
79166969 AAAAAGTA
1 AAAAA-TG
79166977 AAAAATG
1 AAAAATG
79166984 GAGAGGCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
7 21 0.68
8 10 0.32
ACGTcount: A:0.68, C:0.00, G:0.14, T:0.18
Consensus pattern (7 bp):
AAAAATG
Found at i:79168270 original size:44 final size:44
Alignment explanation
Indices: 79168206--79168666 Score: 548
Period size: 44 Copynumber: 10.5 Consensus size: 44
79168196 AAACTATAAG
* *
79168206 TCCTAGCTCCCTGAATAGCAGTGGAATAGGCGGAAGATTAAAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
* * * *
79168250 TCCTAGCTCCTTGACCAGCAGTGGAATAGGTGGAAGACTGAAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
* *
79168294 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGAAAGATTAAAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
* * * *
79168338 TCCTAGCTCCCTGACCAGCAGTGGAATAGGTGGAAGACTGAAAG
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
* *
79168382 TCCTAACTCCCTGAACAGCAGTTGAATAGGCGGAAGATT-ATAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGA-AAA
* * * ** *
79168426 TCCTAGCTCCCTGACCAGTAGTGGAATAGGTGGAAGACGGAAAG
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
*
79168470 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGTAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
* * * * * * *
79168514 TCCTAGTTCCCTGACCAGCAATGGAATAGGTGGAAGACTGTAAG
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
* * *
79168558 TCCCAGCTCCCTGAACAGTAGTGGAATAGACGGAAGATT-ATAAA
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGA-AAA
* * * ** * *
79168602 TCCTAGCTCCCTGACCAGCAGTGGAATATGTGGAAGGCTGTAAG
1 TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
79168646 TCCTAGCTCCCTGAACAGCAG
1 TCCTAGCTCCCTGAACAGCAG
79168667 CGAAGCAGGT
Statistics
Matches: 347, Mismatches: 66, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
43 1 0.00
44 345 0.99
45 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.20
Consensus pattern (44 bp):
TCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGAAAA
Found at i:79168683 original size:88 final size:88
Alignment explanation
Indices: 79168203--79168666 Score: 748
Period size: 88 Copynumber: 5.3 Consensus size: 88
79168193 GTGAAACTAT
* * *
79168203 AAGTCCTAGCTCCCTGAATAGCAGTGGAATAGGCGGAAGATTAAAAATCCTAGCTCCTTGACCAG
1 AAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTATAAATCCTAGCTCCCTGACCAG
79168268 CAGTGGAATAGGTGGAAGACTGA
66 CAGTGGAATAGGTGGAAGACTGA
* * *
79168291 AAATCCTAGCTCCCTGAACAGCAGTGGAATAGGCGAAAGATTAAAAATCCTAGCTCCCTGACCAG
1 AAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTATAAATCCTAGCTCCCTGACCAG
79168356 CAGTGGAATAGGTGGAAGACTGA
66 CAGTGGAATAGGTGGAAGACTGA
* *
79168379 AAGTCCTAACTCCCTGAACAGCAGTTGAATAGGCGGAAGATTATAAATCCTAGCTCCCTGACCAG
1 AAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTATAAATCCTAGCTCCCTGACCAG
* *
79168444 TAGTGGAATAGGTGGAAGACGGA
66 CAGTGGAATAGGTGGAAGACTGA
* *
79168467 AAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTGTAAATCCTAGTTCCCTGACCAG
1 AAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTATAAATCCTAGCTCCCTGACCAG
* *
79168532 CAATGGAATAGGTGGAAGACTGT
66 CAGTGGAATAGGTGGAAGACTGA
* * *
79168555 AAGTCCCAGCTCCCTGAACAGTAGTGGAATAGACGGAAGATTATAAATCCTAGCTCCCTGACCAG
1 AAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTATAAATCCTAGCTCCCTGACCAG
* * *
79168620 CAGTGGAATATGTGGAAGGCTGT
66 CAGTGGAATAGGTGGAAGACTGA
79168643 AAGTCCTAGCTCCCTGAACAGCAG
1 AAGTCCTAGCTCCCTGAACAGCAG
79168667 CGAAGCAGGT
Statistics
Matches: 347, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 347 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.20
Consensus pattern (88 bp):
AAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGCGGAAGATTATAAATCCTAGCTCCCTGACCAG
CAGTGGAATAGGTGGAAGACTGA
Found at i:79169619 original size:85 final size:84
Alignment explanation
Indices: 79169463--79169628 Score: 242
Period size: 85 Copynumber: 2.0 Consensus size: 84
79169453 GTTAAAAAAG
* * *
79169463 ATTAAAGCTACAACAACGAATCTTATTTCCAGGCGGTGTAGTGGAACAGATTAAAGCCACAACGG
1 ATTAAAGCTACAACAACGAATCTTATTTCCAGGCAGTGCAGTGGAACAAATTAAAGCCACAACGG
79169528 CAAATCTTACTTCCCCAAC
66 CAAATCTTACTTCCCCAAC
* **
79169547 ATTAAAGCTACAACAGCGAATCTTATTTCTTTGGCAGTGCAGTGGAACAAATTAAAGCCACAACG
1 ATTAAAGCTACAACAACGAATCTTATTTC-CAGGCAGTGCAGTGGAACAAATTAAAGCCACAACG
** *
79169612 GTGAATCTTGCTTCCCC
65 GCAAATCTTACTTCCCC
79169629 GGCATTGCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 28 0.39
85 44 0.61
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (84 bp):
ATTAAAGCTACAACAACGAATCTTATTTCCAGGCAGTGCAGTGGAACAAATTAAAGCCACAACGG
CAAATCTTACTTCCCCAAC
Found at i:79169669 original size:50 final size:51
Alignment explanation
Indices: 79169615--79169739 Score: 135
Period size: 51 Copynumber: 2.5 Consensus size: 51
79169605 CACAACGGTG
* * *
79169615 AATCTTGCTTCCCCGGCATTGCAGTTAAAAAGACT-AAAGCTACAACAGCA
1 AATCTTGCTTCCCCGGCAGTGCAATGAAAAAGACTAAAAGCTACAACAGCA
* ** * * *
79169665 AATCTTACTTCCCTTGCAGTGCAATGAAACAGATTAAAAGCTACAACGGCA
1 AATCTTGCTTCCCCGGCAGTGCAATGAAAAAGACTAAAAGCTACAACAGCA
* * *
79169716 AATCTTGTTTCCCCGACACTGCAA
1 AATCTTGCTTCCCCGGCAGTGCAA
79169740 CTAGACAGAA
Statistics
Matches: 59, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
50 27 0.46
51 32 0.54
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (51 bp):
AATCTTGCTTCCCCGGCAGTGCAATGAAAAAGACTAAAAGCTACAACAGCA
Found at i:79169728 original size:51 final size:50
Alignment explanation
Indices: 79169547--79169721 Score: 163
Period size: 50 Copynumber: 3.5 Consensus size: 50
79169537 CTTCCCCAAC
* * * * *
79169547 ATTAAAGCTACAACAGCGAATCTTA-TTTCTTTGGCAGTGCAGTGGAACAA
1 ATTAAAGCTACAACAGCAAATCTTACTTCCCTT-GCAGTGCAGTGAAACAG
* * ** * ** * * *
79169597 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGGCATTGCAGTTAAAAAG
1 ATTAAAGCTACAACAGCAAATCTTACTTCCCTTGCAGTGCAGTGAAACAG
* *
79169647 ACTAAAGCTACAACAGCAAATCTTACTTCCCTTGCAGTGCAATGAAACAG
1 ATTAAAGCTACAACAGCAAATCTTACTTCCCTTGCAGTGCAGTGAAACAG
*
79169697 ATTAAAAGCTACAACGGCAAATCTT
1 ATT-AAAGCTACAACAGCAAATCTT
79169722 GTTTCCCCGA
Statistics
Matches: 96, Mismatches: 27, Indels: 3
0.76 0.21 0.02
Matches are distributed among these distances:
50 73 0.76
51 23 0.24
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (50 bp):
ATTAAAGCTACAACAGCAAATCTTACTTCCCTTGCAGTGCAGTGAAACAG
Found at i:79169739 original size:51 final size:49
Alignment explanation
Indices: 79169592--79169739 Score: 134
Period size: 50 Copynumber: 2.9 Consensus size: 49
79169582 AGTGCAGTGG
* * ** * * *
79169592 AACAAATTAAAGCCACAACGGTGAATCTTGCTTCCCCGGCATTGCAGTTA
1 AACAGATTAAAGCTACAACGGCAAATCTTGCTTCCCC-GCACTGCAATGA
* * * * * *
79169642 AAAAGACTAAAGCTACAACAGCAAATCTTACTTCCCTTGCAGTGCAATGA
1 AACAGATTAAAGCTACAACGGCAAATCTTGCTTCCC-CGCACTGCAATGA
*
79169692 AACAGATTAAAAGCTACAACGGCAAATCTTGTTTCCCCGACACTGCAA
1 AACAGATT-AAAGCTACAACGGCAAATCTTGCTTCCCCG-CACTGCAA
79169740 CTAGACAGAA
Statistics
Matches: 76, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
50 44 0.58
51 32 0.42
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (49 bp):
AACAGATTAAAGCTACAACGGCAAATCTTGCTTCCCCGCACTGCAATGA
Found at i:79170383 original size:21 final size:22
Alignment explanation
Indices: 79170351--79170392 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
79170341 GTTGTCCCCA
79170351 GCCACGCGCA-CCTCCATACGT
1 GCCACGCGCACCCTCCATACGT
*
79170372 GCCACGTC-CACCCTCCGTACG
1 GCCACG-CGCACCCTCCATACG
79170393 CCACACCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.17, C:0.50, G:0.19, T:0.14
Consensus pattern (22 bp):
GCCACGCGCACCCTCCATACGT
Found at i:79184975 original size:30 final size:30
Alignment explanation
Indices: 79184940--79185024 Score: 161
Period size: 30 Copynumber: 2.8 Consensus size: 30
79184930 CTTTTAATTT
79184940 TTAAAAATTAAGTATAGTCTTTAATCTAAA
1 TTAAAAATTAAGTATAGTCTTTAATCTAAA
*
79184970 TTAAAAATTAAGTATAGCCTTTAATCTAAA
1 TTAAAAATTAAGTATAGTCTTTAATCTAAA
79185000 TTAAAAATTAAGTATAGTCTTTAAT
1 TTAAAAATTAAGTATAGTCTTTAAT
79185025 ATTATATTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (30 bp):
TTAAAAATTAAGTATAGTCTTTAATCTAAA
Found at i:79192807 original size:9 final size:9
Alignment explanation
Indices: 79192793--79192829 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
79192783 TATAGTTTGA
79192793 TATTCGAAT
1 TATTCGAAT
79192802 TATTCGAAT
1 TATTCGAAT
*
79192811 TATTCGAGT
1 TATTCGAAT
79192820 TATTCGAAT
1 TATTCGAAT
79192829 T
1 T
79192830 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:79194418 original size:56 final size:56
Alignment explanation
Indices: 79194333--79194452 Score: 161
Period size: 56 Copynumber: 2.2 Consensus size: 56
79194323 TTGCTAAAAG
* *
79194333 ATAAT-ATATCATATAATATCCCATTAGGAATCAAATTGCTAAGAGATAATATCAC
1 ATAATAATATCATATAACATCCCATTAGGAATCAAATTGCTAAAAGATAATATCAC
* ** * * *
79194388 ATAATAATATTATATAACATCTTATTAGGAATCAAATTGTTAAAAGATAGTATCCC
1 ATAATAATATCATATAACATCCCATTAGGAATCAAATTGCTAAAAGATAATATCAC
79194444 ATAATAATA
1 ATAATAATA
79194453 CCCTAACACC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
55 5 0.09
56 51 0.91
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (56 bp):
ATAATAATATCATATAACATCCCATTAGGAATCAAATTGCTAAAAGATAATATCAC
Found at i:79194741 original size:20 final size:20
Alignment explanation
Indices: 79194716--79194753 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
79194706 TAAGGACTAA
79194716 TTTGAAATAAAA-TAGAAAAT
1 TTTGAAA-AAAATTAGAAAAT
79194736 TTTGAAAAAAATTAGAAA
1 TTTGAAAAAAATTAGAAA
79194754 CAGGGTCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (20 bp):
TTTGAAAAAAATTAGAAAAT
Found at i:79195929 original size:45 final size:45
Alignment explanation
Indices: 79195872--79196037 Score: 147
Period size: 45 Copynumber: 3.7 Consensus size: 45
79195862 CCCGAAATAG
* * **
79195872 TGCCATAGTATCTTTCAACTATGGTTTTGATTGTTACCGA-TGTAA
1 TGCCATAATATCTTTCAACTATGGTCTT-ATTCATACCGACTGTAA
* ** *
79195917 TGCCCTAATATCTTTCAACTATGGTCTTATTCATATTGACTTTAA
1 TGCCATAATATCTTTCAACTATGGTCTTATTCATACCGACTGTAA
* ** *** * * *
79195962 TGCCATAGTATCTTTCAACTATGGTCTTACACATTTTTG-GTTTAG
1 TGCCATAATATCTTTCAACTATGGTCTTATTCA-TACCGACTGTAA
79196007 TGCCATAATATCTTTCAACTATGGTCTTATT
1 TGCCATAATATCTTTCAACTATGGTCTTATT
79196038 ATTTCGGTTT
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 7 0.07
45 90 0.89
46 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.44
Consensus pattern (45 bp):
TGCCATAATATCTTTCAACTATGGTCTTATTCATACCGACTGTAA
Found at i:79198474 original size:39 final size:39
Alignment explanation
Indices: 79198420--79198498 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
79198410 CTAGCCATTT
*
79198420 AGAATAATGAAAGAAAAAATTGTGTAAAAAACTTTACTC
1 AGAATAATGAAAGAAAAAATTGTGTAAAAAACCTTACTC
79198459 AGAATAATGAAAGAAAAAATTGTGTAAAAAACCTTACTC
1 AGAATAATGAAAGAAAAAATTGTGTAAAAAACCTTACTC
79198498 A
1 A
79198499 TATGCCATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.54, C:0.09, G:0.13, T:0.24
Consensus pattern (39 bp):
AGAATAATGAAAGAAAAAATTGTGTAAAAAACCTTACTC
Found at i:79198622 original size:13 final size:13
Alignment explanation
Indices: 79198604--79198633 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
79198594 ATTACTAAAA
*
79198604 AATAATATCCTAT
1 AATAATATCATAT
79198617 AATAATATCATAT
1 AATAATATCATAT
79198630 AATA
1 AATA
79198634 TTGATTAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (13 bp):
AATAATATCATAT
Found at i:79205360 original size:25 final size:26
Alignment explanation
Indices: 79205314--79205375 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
79205304 TAAACATATG
79205314 AATTATAAAACATGAAAATATA-AAT
1 AATTATAAAACATGAAAATATATAAT
* **
79205339 AATTATAAAATATGAATGTATATAAT
1 AATTATAAAACATGAAAATATATAAT
79205365 ATATATATAAA
1 A-AT-TATAAA
79205376 CTATATACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.61
26 4 0.13
27 2 0.06
28 6 0.19
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (26 bp):
AATTATAAAACATGAAAATATATAAT
Found at i:79206860 original size:25 final size:24
Alignment explanation
Indices: 79206811--79206859 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
79206801 TAAAGAAAAA
*
79206811 TCTAGTAAACAAAAACTATCTTTT
1 TCTAGTAAACAAAAAATATCTTTT
79206835 TCTAGTAAACAAAAAATATCTTTT
1 TCTAGTAAACAAAAAATATCTTTT
79206859 T
1 T
79206860 TGAACTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.04, T:0.39
Consensus pattern (24 bp):
TCTAGTAAACAAAAAATATCTTTT
Found at i:79208630 original size:13 final size:13
Alignment explanation
Indices: 79208612--79208652 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
79208602 AAAGTGCTGG
79208612 AAATAATAAAATA
1 AAATAATAAAATA
79208625 AAATAATAAAATA
1 AAATAATAAAATA
*
79208638 ACA-AATAAAAATA
1 AAATAAT-AAAATA
79208651 AA
1 AA
79208653 GAATAGGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 3 0.12
13 22 0.88
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAATAAAATA
Found at i:79210268 original size:13 final size:12
Alignment explanation
Indices: 79210246--79210299 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
79210236 AGATTAAATC
79210246 TAAATA-TAAAA
1 TAAATACTAAAA
79210257 TAAATAACTAAAA
1 TAAAT-ACTAAAA
79210270 TTCAAATA--AAAA
1 -T-AAATACTAAAA
79210282 TAAATACTAGAAA
1 TAAATACTA-AAA
79210295 TAAAT
1 TAAAT
79210300 TGAGCGCAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
10 5 0.14
11 6 0.17
12 6 0.17
13 13 0.36
14 2 0.06
15 4 0.11
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.26
Consensus pattern (12 bp):
TAAATACTAAAA
Found at i:79210290 original size:24 final size:27
Alignment explanation
Indices: 79210247--79210295 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
79210237 GATTAAATCT
79210247 AAATATAAAATAAATAACTA-AAATTC
1 AAATATAAAATAAATAACTAGAAATTC
79210273 AAATA-AAAATAAAT-ACTAGAAAT
1 AAATATAAAATAAATAACTAGAAAT
79210296 AAATTGAGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.18
25 13 0.59
26 5 0.23
ACGTcount: A:0.67, C:0.06, G:0.02, T:0.24
Consensus pattern (27 bp):
AAATATAAAATAAATAACTAGAAATTC
Found at i:79211621 original size:17 final size:17
Alignment explanation
Indices: 79211599--79211633 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
79211589 ATTACAAAAT
*
79211599 CAAATCTTATAATATTA
1 CAAATCTTATAAGATTA
*
79211616 CAAATCTTTTAAGATTA
1 CAAATCTTATAAGATTA
79211633 C
1 C
79211634 TTTCCATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (17 bp):
CAAATCTTATAAGATTA
Found at i:79213150 original size:11 final size:11
Alignment explanation
Indices: 79213134--79213168 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
79213124 GATAAGTATT
79213134 ATATTAAATTA
1 ATATTAAATTA
79213145 ATATTAAATT-
1 ATATTAAATTA
*
79213155 TTATTAAATTA
1 ATATTAAATTA
79213166 ATA
1 ATA
79213169 GAATATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATATTAAATTA
Found at i:79213176 original size:21 final size:22
Alignment explanation
Indices: 79213130--79213176 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
79213120 TCAAGATAAG
* *
79213130 TATTATATTAAATTAATATTAA
1 TATTTTATTAAATTAATATGAA
79213152 -ATTTTATTAAATTAATA-GAA
1 TATTTTATTAAATTAATATGAA
79213172 TATTT
1 TATTT
79213177 ATCTACAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TATTTTATTAAATTAATATGAA
Found at i:79213262 original size:12 final size:12
Alignment explanation
Indices: 79213245--79213276 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
79213235 TTAATATAAT
79213245 ACTATTAAGATA
1 ACTATTAAGATA
79213257 ACTATTAAGATA
1 ACTATTAAGATA
*
79213269 AGTATTAA
1 ACTATTAA
79213277 ATTAAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.34
Consensus pattern (12 bp):
ACTATTAAGATA
Found at i:79218967 original size:14 final size:14
Alignment explanation
Indices: 79218948--79218978 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
79218938 TTTGATTGGT
*
79218948 GGAAAATATTTTCC
1 GGAAAATATTTTAC
79218962 GGAAAATATTTTAC
1 GGAAAATATTTTAC
79218976 GGA
1 GGA
79218979 TTTTCCAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (14 bp):
GGAAAATATTTTAC
Found at i:79219476 original size:27 final size:27
Alignment explanation
Indices: 79219389--79219487 Score: 96
Period size: 27 Copynumber: 3.6 Consensus size: 27
79219379 AAAGGTATAT
79219389 TTTCTTGTCCATAGTTTTGTGAATCGG
1 TTTCTTGTCCATAGTTTTGTGAATCGG
* * * *
79219416 TTTCTGGGT---TAGTTCCTTTATGTTATTGG
1 TTTCT-TGTCCATAG-T--TTTGTG-AATCGG
79219445 TTTCTTGTCCATAGTTTTGTGAATCGG
1 TTTCTTGTCCATAGTTTTGTGAATCGG
79219472 TTTCTTGTCCATAGTT
1 TTTCTTGTCCATAGTT
79219488 AGAAAGATTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 25 0.45
28 14 0.25
29 9 0.16
30 1 0.02
31 3 0.05
ACGTcount: A:0.13, C:0.14, G:0.21, T:0.52
Consensus pattern (27 bp):
TTTCTTGTCCATAGTTTTGTGAATCGG
Found at i:79221588 original size:26 final size:26
Alignment explanation
Indices: 79221559--79221616 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
79221549 CATCCTCAAA
79221559 CTATAATCTAGATATTAAATTGGTCT
1 CTATAATCTAGATATTAAATTGGTCT
*
79221585 CTATAATCTAGATTTTAAATTGGTCT
1 CTATAATCTAGATATTAAATTGGTCT
79221611 CTATAA
1 CTATAA
79221617 ATTTTGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.43
Consensus pattern (26 bp):
CTATAATCTAGATATTAAATTGGTCT
Found at i:79221910 original size:32 final size:33
Alignment explanation
Indices: 79221874--79221962 Score: 99
Period size: 33 Copynumber: 2.7 Consensus size: 33
79221864 ACAACTTTTC
**
79221874 CAGAAAATATTTT-CAGAAAATCTGTCAAACAA
1 CAGAAAATATTTTACAGAAAATCAATCAAACAA
* * * *
79221906 CAGAAAATATTTTACACAGATTCAATCAAACAC
1 CAGAAAATATTTTACAGAAAATCAATCAAACAA
* *
79221939 CAGAAAATATTTTCCAGTAAATCA
1 CAGAAAATATTTTACAGAAAATCA
79221963 TTTTACAGAA
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
32 13 0.29
33 32 0.71
ACGTcount: A:0.48, C:0.18, G:0.08, T:0.26
Consensus pattern (33 bp):
CAGAAAATATTTTACAGAAAATCAATCAAACAA
Found at i:79221979 original size:20 final size:20
Alignment explanation
Indices: 79221954--79221993 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
79221944 AATATTTTCC
*
79221954 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
79221974 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
79221994 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:79222008 original size:34 final size:35
Alignment explanation
Indices: 79221942--79222008 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
79221932 CAAACACCAG
*
79221942 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
79221977 AAAACATTTTCCAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
79222009 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:79232586 original size:19 final size:21
Alignment explanation
Indices: 79232564--79232613 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 21
79232554 TTATATATAT
79232564 TATTATATTATTT-A-TAAAA
1 TATTATATTATTTAAGTAAAA
79232583 TA-T-TATTATTTAAGTAAAA
1 TATTATATTATTTAAGTAAAA
*
79232602 TATTAAATTATT
1 TATTATATTATT
79232614 ATTTAACAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 8 0.31
18 2 0.08
19 9 0.35
20 1 0.04
21 6 0.23
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
TATTATATTATTTAAGTAAAA
Found at i:79234304 original size:68 final size:68
Alignment explanation
Indices: 79234190--79234317 Score: 238
Period size: 68 Copynumber: 1.9 Consensus size: 68
79234180 TAATTAGCAT
*
79234190 ATCATATAAATTATCAATTGAATAAAATATCTGTTCATATGAAATAACAATTCATACAATTTAGC
1 ATCACATAAATTATCAATTGAATAAAATATCTGTTCATATGAAATAACAATTCATACAATTTAGC
79234255 CAG
66 CAG
*
79234258 ATCACATAAATTATCAATTGAATAAAATATCTGTTCATATGAAATAACAGTTCATACAAT
1 ATCACATAAATTATCAATTGAATAAAATATCTGTTCATATGAAATAACAATTCATACAAT
79234318 ATAATAATTC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 58 1.00
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (68 bp):
ATCACATAAATTATCAATTGAATAAAATATCTGTTCATATGAAATAACAATTCATACAATTTAGC
CAG
Found at i:79235393 original size:28 final size:29
Alignment explanation
Indices: 79235358--79235475 Score: 100
Period size: 28 Copynumber: 4.2 Consensus size: 29
79235348 CCATAATTAC
*
79235358 ATAT-ATACTCAA-CCATGCATATATATT
1 ATATAATACTAAAGCCATGCATATATATT
* * ** *
79235385 ATATAATACCAAAATCCATTAATATATACT
1 ATATAATA-CTAAAGCCATGCATATATATT
* *
79235415 ATGTAA-AATAAAGCCATGCATATATATT
1 ATATAATACTAAAGCCATGCATATATATT
* * *
79235443 ATATAAGA-TAAAGTCATGCATATATATA
1 ATATAATACTAAAGCCATGCATATATATT
79235471 ATATA
1 ATATA
79235476 TGTATCACCA
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
27 4 0.06
28 46 0.64
29 5 0.07
30 17 0.24
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (29 bp):
ATATAATACTAAAGCCATGCATATATATT
Found at i:79242155 original size:9 final size:9
Alignment explanation
Indices: 79242141--79242175 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
79242131 TGATACTATA
79242141 AAAATAAGG
1 AAAATAAGG
79242150 AAAATAAGG
1 AAAATAAGG
*
79242159 AAAATAAAG
1 AAAATAAGG
*
79242168 AAAGTAAG
1 AAAATAAG
79242176 CATAAAGCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11
Consensus pattern (9 bp):
AAAATAAGG
Found at i:79242301 original size:12 final size:12
Alignment explanation
Indices: 79242276--79242314 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
79242266 ACTCGCTTCT
* *
79242276 TTACTTTCTCAC
1 TTACTTGCTTAC
*
79242288 TTACTTGTTTAC
1 TTACTTGCTTAC
79242300 TTACTTGCTTAC
1 TTACTTGCTTAC
79242312 TTA
1 TTA
79242315 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.18, C:0.23, G:0.05, T:0.54
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:79244720 original size:61 final size:58
Alignment explanation
Indices: 79244616--79244732 Score: 171
Period size: 61 Copynumber: 2.0 Consensus size: 58
79244606 ATCACTTTAA
* * *
79244616 TATTAAATTAATATAATAGTTATCAAGATAAATATTAGATTAAATTTAATATTAAATT
1 TATTAAATTAATAGAATAGTTATCAAGATAAATATGAAATTAAATTTAATATTAAATT
*
79244674 TATTAAATTAATAGAATATTTATCTACAAGATAAATATGAAATTAAATTTAATATTAAA
1 TATTAAATTAATAGAATAGTTA--T-CAAGATAAATATGAAATTAAATTTAATATTAAA
79244733 ATAATCACTT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 20 0.38
60 1 0.02
61 31 0.60
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (58 bp):
TATTAAATTAATAGAATAGTTATCAAGATAAATATGAAATTAAATTTAATATTAAATT
Found at i:79244797 original size:17 final size:16
Alignment explanation
Indices: 79244744--79244801 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
79244734 TAATCACTTT
79244744 AATATTAAATT-AATAA
1 AATATTAAATTAAAT-A
79244760 AATATT--ATTAATATA
1 AATATTAAATTAA-ATA
*
79244775 AGTATTAAATTAAACTA
1 AATATTAAATTAAA-TA
79244792 AATATTAAAT
1 AATATTAAAT
79244802 CTATTAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
14 3 0.09
15 7 0.20
16 9 0.26
17 16 0.46
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (16 bp):
AATATTAAATTAAATA
Found at i:79245297 original size:31 final size:31
Alignment explanation
Indices: 79245262--79245373 Score: 206
Period size: 31 Copynumber: 3.6 Consensus size: 31
79245252 ATTTCAAAAT
*
79245262 TATACATGACCTTTGATTTAATGTGCAATTG
1 TATACATGAACTTTGATTTAATGTGCAATTG
79245293 TATACATGAACTTTGATTTAATGTGCAATTG
1 TATACATGAACTTTGATTTAATGTGCAATTG
79245324 TATACATGAACTTTGATTTAATGTGCAATTG
1 TATACATGAACTTTGATTTAATGTGCAATTG
*
79245355 TATACATGAACTTTAATTT
1 TATACATGAACTTTGATTT
79245374 GGTGCAATTA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 79 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (31 bp):
TATACATGAACTTTGATTTAATGTGCAATTG
Found at i:79254518 original size:16 final size:17
Alignment explanation
Indices: 79254480--79254520 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
79254470 GAGAGCTGGG
* *
79254480 TTAAAATTTGTCTTTTC
1 TTAAAATTTGACTTTAC
79254497 TT-AAATTTGAC-TTAC
1 TTAAAATTTGACTTTAC
79254512 TTAAAATTT
1 TTAAAATTT
79254521 TTGTTTGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 5 0.24
16 14 0.67
17 2 0.10
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.54
Consensus pattern (17 bp):
TTAAAATTTGACTTTAC
Found at i:79258982 original size:26 final size:26
Alignment explanation
Indices: 79258941--79259012 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
79258931 TCTCATCCCT
* * *
79258941 ATTTTACCCTTAGTAAAGTTTTGATG
1 ATTTTACCCTTGGTAAAATTTTGACG
79258967 ATTTTATCCC-TGGTAAAATTTTGACG
1 ATTTTA-CCCTTGGTAAAATTTTGACG
79258993 ATTTTACCCTTGGTAAAATT
1 ATTTTACCCTTGGTAAAATT
79259013 CGGAGAAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 3 0.07
26 35 0.85
27 3 0.07
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (26 bp):
ATTTTACCCTTGGTAAAATTTTGACG
Found at i:79264026 original size:6 final size:6
Alignment explanation
Indices: 79264017--79264056 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
79264007 CACCGATCTT
* *
79264017 CCCTTT CCCTTT CCCTTC CCCTTC CCCTTC CCCTTC CCCT
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCT
79264057 ATCCTTGACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (6 bp):
CCCTTC
Found at i:79269968 original size:16 final size:16
Alignment explanation
Indices: 79269947--79269977 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79269937 ATTACATTTC
*
79269947 AAAAGATAAAAAAAGA
1 AAAAGAAAAAAAAAGA
79269963 AAAAGAAAAAAAAAG
1 AAAAGAAAAAAAAAG
79269978 CAATATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAAGAAAAAAAAAGA
Found at i:79276946 original size:38 final size:36
Alignment explanation
Indices: 79276864--79276946 Score: 89
Period size: 38 Copynumber: 2.2 Consensus size: 36
79276854 GTTATTCTCT
79276864 TTGAGAGG-GTTGAATATTAAGATTTGGGTAGAAACC
1 TTGAG-GGAGTTGAATATTAAGATTTGGGTAGAAACC
* * *
79276900 TT-ATGGGAGTTGCAATCTTAAGATTTTGGGTGGAAATC
1 TTGA-GGGAGTTG-AATATTAAGA-TTTGGGTAGAAACC
79276938 TTGAGGGAG
1 TTGAGGGAG
79276947 ATTGTAAGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
35 3 0.08
36 7 0.18
37 9 0.23
38 19 0.49
39 1 0.03
ACGTcount: A:0.29, C:0.06, G:0.33, T:0.33
Consensus pattern (36 bp):
TTGAGGGAGTTGAATATTAAGATTTGGGTAGAAACC
Found at i:79278483 original size:20 final size:20
Alignment explanation
Indices: 79278442--79278483 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
79278432 TCCAAACATT
* *
79278442 TTAGAAAATGTTTTGAATAG
1 TTAGAAAATGTTTGGAAAAG
79278462 TTAGAAAAT-TTTGGAGAAAG
1 TTAGAAAATGTTTGGA-AAAG
79278482 TT
1 TT
79278484 CAAAAACAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.38
Consensus pattern (20 bp):
TTAGAAAATGTTTGGAAAAG
Found at i:79283655 original size:30 final size:31
Alignment explanation
Indices: 79283601--79283660 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
79283591 AAACCTTTTA
* *
79283601 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTGTACTCCCTTCCCAC
* *
79283631 TTTTCCCCTAAAACTTGTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTGTACTCCCTTCCCA
79283661 TCCCACCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.40, G:0.02, T:0.38
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTGTACTCCCTTCCCAC
Found at i:79283940 original size:17 final size:17
Alignment explanation
Indices: 79283920--79283966 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
79283910 CACATTTTAT
79283920 ATTATTTATATTATTGA
1 ATTATTTATATTATTGA
79283937 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTGA
79283955 A-TATTTATATTA
1 ATTATTTATATTA
79283967 AAATTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 3 0.11
17 14 0.52
18 8 0.30
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTATTTATATTATTGA
Found at i:79284576 original size:5 final size:5
Alignment explanation
Indices: 79284561--79284625 Score: 57
Period size: 5 Copynumber: 13.2 Consensus size: 5
79284551 ATTTGGCACT
79284561 TTGACA TTGAA TTGAA TTAGAA GTTG-A TTGAA -TGAA TTGAA TTG-A
1 TTGA-A TTGAA TTGAA TT-GAA -TTGAA TTGAA TTGAA TTGAA TTGAA
* *
79284606 TT-AT TTGAA TTGAA ATGAA T
1 TTGAA TTGAA TTGAA TTGAA T
79284626 ATAAATGTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
4 12 0.24
5 27 0.55
6 8 0.16
7 2 0.04
ACGTcount: A:0.38, C:0.02, G:0.20, T:0.40
Consensus pattern (5 bp):
TTGAA
Found at i:79285022 original size:6 final size:6
Alignment explanation
Indices: 79285002--79285040 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
79284992 ATGAAATGGT
79285002 ATGG-A ATGAGAA ATGGAA ATGGAA ATGGAA ATGGAA ATG
1 ATGGAA ATG-GAA ATGGAA ATGGAA ATGGAA ATGGAA ATG
79285041 AAAAATGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 3 0.09
6 25 0.78
7 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.33, T:0.18
Consensus pattern (6 bp):
ATGGAA
Found at i:79285053 original size:18 final size:18
Alignment explanation
Indices: 79285006--79285044 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
79284996 AATGGTATGG
*
79285006 AATGAGAAATGGAAATGGA
1 AATG-GAAATGGAAATGAA
79285025 AATGGAAATGGAAATGAA
1 AATGGAAATGGAAATGAA
79285043 AA
1 AA
79285045 ATGATATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.15
Consensus pattern (18 bp):
AATGGAAATGGAAATGAA
Found at i:79290464 original size:19 final size:20
Alignment explanation
Indices: 79290442--79290484 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
79290432 TTTTTGCTTC
*
79290442 TTCTTCTC-GTATGTTTCTT
1 TTCTTCTCTGTACGTTTCTT
*
79290461 TTCTTCTCTTTACGTTTCTT
1 TTCTTCTCTGTACGTTTCTT
79290481 TTCT
1 TTCT
79290485 CCATTTTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.05, C:0.23, G:0.07, T:0.65
Consensus pattern (20 bp):
TTCTTCTCTGTACGTTTCTT
Found at i:79294089 original size:16 final size:15
Alignment explanation
Indices: 79294068--79294106 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 15
79294058 TTAAATTACT
79294068 ATTACAGCTCTATTCC
1 ATTACAGCTCTATT-C
*
79294084 ATTACACCTCTATTC
1 ATTACAGCTCTATTC
79294099 ATTACAGC
1 ATTACAGC
79294107 GAACCAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.28, C:0.31, G:0.05, T:0.36
Consensus pattern (15 bp):
ATTACAGCTCTATTC
Found at i:79295260 original size:19 final size:20
Alignment explanation
Indices: 79295210--79295257 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
79295200 GTGCCAAAAG
*
79295210 AAAAGAAAATAAAAAATAAA
1 AAAATAAAATAAAAAATAAA
* * *
79295230 AAGATAAAATAAACATTAAA
1 AAAATAAAATAAAAAATAAA
79295250 AAAATAAA
1 AAAATAAA
79295258 TAATAATTTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (20 bp):
AAAATAAAATAAAAAATAAA
Found at i:79296292 original size:15 final size:15
Alignment explanation
Indices: 79296272--79296303 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
79296262 CATTTCACTG
*
79296272 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
79296287 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
79296302 TT
1 TT
79296304 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:79316687 original size:12 final size:12
Alignment explanation
Indices: 79316670--79316694 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79316660 GGTGTGCATT
79316670 CGGTTAACCGAC
1 CGGTTAACCGAC
79316682 CGGTTAACCGAC
1 CGGTTAACCGAC
79316694 C
1 C
79316695 CGAATTAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:79316871 original size:9 final size:9
Alignment explanation
Indices: 79316857--79316949 Score: 132
Period size: 9 Copynumber: 10.3 Consensus size: 9
79316847 TGGTTAAAAA
79316857 TTAACCGAT
1 TTAACCGAT
*
79316866 TTAACCGAC
1 TTAACCGAT
79316875 TTAACCGAT
1 TTAACCGAT
*
79316884 TTAACTGAT
1 TTAACCGAT
*
79316893 TTAACCGAC
1 TTAACCGAT
*
79316902 TTAACCAAT
1 TTAACCGAT
79316911 TTAACCGAT
1 TTAACCGAT
*
79316920 TTAACCGAC
1 TTAACCGAT
*
79316929 TTAACCGAC
1 TTAACCGAT
79316938 TTAACCGAT
1 TTAACCGAT
79316947 TTA
1 TTA
79316950 GTTCAACTGA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 74 1.00
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (9 bp):
TTAACCGAT
Found at i:79316887 original size:27 final size:27
Alignment explanation
Indices: 79316857--79316949 Score: 159
Period size: 27 Copynumber: 3.4 Consensus size: 27
79316847 TGGTTAAAAA
79316857 TTAACCGATTTAACCGACTTAACCGAT
1 TTAACCGATTTAACCGACTTAACCGAT
* *
79316884 TTAACTGATTTAACCGACTTAACCAAT
1 TTAACCGATTTAACCGACTTAACCGAT
*
79316911 TTAACCGATTTAACCGACTTAACCGAC
1 TTAACCGATTTAACCGACTTAACCGAT
79316938 TTAACCGATTTA
1 TTAACCGATTTA
79316950 GTTCAACTGA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (27 bp):
TTAACCGATTTAACCGACTTAACCGAT
Found at i:79318112 original size:15 final size:14
Alignment explanation
Indices: 79318083--79318116 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
79318073 AGAAAGAAAA
79318083 AAGAAAAACTAAAG
1 AAGAAAAACTAAAG
*
79318097 AAGAAAGAACTGAAG
1 AAGAAA-AACTAAAG
79318112 AAGAA
1 AAGAA
79318117 CTGAAGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.68, C:0.06, G:0.21, T:0.06
Consensus pattern (14 bp):
AAGAAAAACTAAAG
Found at i:79321837 original size:44 final size:45
Alignment explanation
Indices: 79321774--79321858 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
79321764 TTTTATGAAT
*
79321774 TAGAATGTTATGAACACTTTAAAAATCA-TATAAATAAAATATTA
1 TAGAATGTTATGAACACTTTAAAAATCATTAAAAATAAAATATTA
79321818 TAGAATGTTAT-AAGCACTTTAAAAATCATTAAAAATAAAAT
1 TAGAATGTTATGAA-CACTTTAAAAATCATTAAAAATAAAAT
79321859 TTAATGTTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
43 2 0.05
44 25 0.66
45 11 0.29
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (45 bp):
TAGAATGTTATGAACACTTTAAAAATCATTAAAAATAAAATATTA
Found at i:79330541 original size:36 final size:36
Alignment explanation
Indices: 79330500--79330570 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
79330490 CATGAATTAC
*
79330500 TGGTAGTGCTTACATAGCAGTTATCCTTACTCTATG
1 TGGTAGTGCTTACAGAGCAGTTATCCTTACTCTATG
79330536 TGGTAGTGCTTACAGAGCAGTTATCCTTACTCTAT
1 TGGTAGTGCTTACAGAGCAGTTATCCTTACTCTAT
79330571 TTCAAACTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (36 bp):
TGGTAGTGCTTACAGAGCAGTTATCCTTACTCTATG
Found at i:79334315 original size:36 final size:36
Alignment explanation
Indices: 79334274--79334344 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
79334264 CATGAATTAC
*
79334274 TGGTAGTGCTTACATAGCAGTTATCCTTACTCTATG
1 TGGTAGTGCTTACAGAGCAGTTATCCTTACTCTATG
79334310 TGGTAGTGCTTACAGAGCAGTTATCCTTACTCTAT
1 TGGTAGTGCTTACAGAGCAGTTATCCTTACTCTAT
79334345 TTCAAACTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (36 bp):
TGGTAGTGCTTACAGAGCAGTTATCCTTACTCTATG
Found at i:79343959 original size:23 final size:23
Alignment explanation
Indices: 79343897--79343961 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
79343887 GGGTTTATAG
* *
79343897 TTTTTAGGTTAGGTTTTCTTTCT
1 TTTTTAGTTTAGGTTTTCTTTCA
** * *
79343920 TTTTTCCTTTCA-ATTTTTTTTCA
1 TTTTTAGTTT-AGGTTTTCTTTCA
79343943 TTTTTAGTTTAGGTTTTCT
1 TTTTTAGTTTAGGTTTTCT
79343962 CTTTTCTTTT
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
22 1 0.03
23 28 0.93
24 1 0.03
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.68
Consensus pattern (23 bp):
TTTTTAGTTTAGGTTTTCTTTCA
Found at i:79351874 original size:23 final size:25
Alignment explanation
Indices: 79351847--79351905 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
79351837 TTAATTTAGC
*
79351847 CATTTTTATTTT-ATT-TATTTTTA
1 CATTTTTATTTTAATTAAATTTTTA
* *
79351870 TATTTTTGTTTTAATTAAATTTTTA
1 CATTTTTATTTTAATTAAATTTTTA
*
79351895 CATTTTAATTT
1 CATTTTTATTT
79351906 GTCTTTTGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
23 10 0.36
24 3 0.11
25 15 0.54
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.69
Consensus pattern (25 bp):
CATTTTTATTTTAATTAAATTTTTA
Found at i:79355094 original size:11 final size:11
Alignment explanation
Indices: 79355080--79355132 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
79355070 ATTCAATGGT
79355080 TATTTTAATTC
1 TATTTTAATTC
* *
79355091 TATTTTGAGTC
1 TATTTTAATTC
79355102 TATTTTGAATTC
1 TATTTT-AATTC
79355114 ATATATTTAATT-
1 -TAT-TTTAATTC
79355126 TATTTTA
1 TATTTTA
79355133 GAGCTTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 4 0.11
11 18 0.51
12 3 0.09
13 7 0.20
14 3 0.09
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (11 bp):
TATTTTAATTC
Found at i:79358800 original size:3 final size:3
Alignment explanation
Indices: 79358779--79358847 Score: 54
Period size: 3 Copynumber: 22.7 Consensus size: 3
79358769 TTCTTTTTAT
* * *
79358779 TTA TTA TTC TTA TTC TTA TTA TT- TTCA TTA TTA TTTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA -TTA TTA TTA TTA
79358825 -TA TTTA TTA TTA -TA TTTA TTA TT
1 TTA -TTA TTA TTA TTA -TTA TTA TT
79358848 CCTATATTTC
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
2 6 0.11
3 38 0.72
4 9 0.17
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:79358844 original size:34 final size:34
Alignment explanation
Indices: 79358775--79358847 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 34
79358765 TTGTTTCTTT
* *
79358775 TTATTTATTATTCTTATTCTTATTATTTTCATTA
1 TTATTTATTATTATTATTCTTATTATTATCATTA
*
79358809 TTATTTATTGTTATTATAT-TTATTATTAT-ATTTA
1 TTATTTATTATTATTAT-TCTTATTATTATCA-TTA
79358843 TTATT
1 TTATT
79358848 CCTATATTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 1 0.03
34 32 0.94
35 1 0.03
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.68
Consensus pattern (34 bp):
TTATTTATTATTATTATTCTTATTATTATCATTA
Found at i:79358856 original size:15 final size:12
Alignment explanation
Indices: 79358776--79358847 Score: 67
Period size: 12 Copynumber: 5.9 Consensus size: 12
79358766 TGTTTCTTTT
*
79358776 TATTTATTATTC
1 TATTTATTATTA
*
79358788 T-TATTCTTATTA
1 TAT-TTATTATTA
79358800 T-TTTCATTATTA
1 TATTT-ATTATTA
* *
79358812 TTTATTGTTATTA
1 TAT-TTATTATTA
79358825 TATTTATTATTA
1 TATTTATTATTA
79358837 TATTTATTATT
1 TATTTATTATT
79358848 CCTATATTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
11 3 0.06
12 36 0.72
13 9 0.18
14 2 0.04
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.68
Consensus pattern (12 bp):
TATTTATTATTA
Found at i:79358866 original size:24 final size:24
Alignment explanation
Indices: 79358834--79358895 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 24
79358824 ATATTTATTA
79358834 TTATATTTATTATTC-CTAT-ATTT
1 TTAT-TTTATTATTCACTATCATTT
79358857 CTTAGTTTTATTA-TCACTATCATTT
1 -TTA-TTTTATTATTCACTATCATTT
79358882 TTATTGTTATTATT
1 TTATT-TTATTATT
79358896 TTTAGTTCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
23 4 0.12
24 23 0.70
25 6 0.18
ACGTcount: A:0.24, C:0.10, G:0.03, T:0.63
Consensus pattern (24 bp):
TTATTTTATTATTCACTATCATTT
Found at i:79358959 original size:3 final size:3
Alignment explanation
Indices: 79358953--79359025 Score: 53
Period size: 3 Copynumber: 24.3 Consensus size: 3
79358943 ATTTTTTTAG
*
79358953 TTA TTA TTA TTA TTA TT- TTCA TTTA TTA TT- TTC TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A -TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
79358997 TTA CTTA GTC TTA TTA TTT TTA TGA TTA T
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA T
79359026 GAGTCTTATT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
2 6 0.11
3 43 0.78
4 4 0.07
5 2 0.04
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:79358980 original size:13 final size:12
Alignment explanation
Indices: 79358962--79358995 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
79358952 GTTATTATTA
79358962 TTATTATTTTCAT
1 TTATTATTTTC-T
79358975 TTATTATTTTCT
1 TTATTATTTTCT
79358987 TATATTATT
1 T-TATTATT
79358996 ATTACTTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 2 0.10
13 18 0.90
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (12 bp):
TTATTATTTTCT
Found at i:79358980 original size:16 final size:17
Alignment explanation
Indices: 79358957--79358999 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
79358947 TTTTAGTTAT
79358957 TATTATTATTATT-TTCA
1 TATTATTATTATTCTT-A
79358974 T-TTATTATT-TTCTTA
1 TATTATTATTATTCTTA
79358989 TATTATTATTA
1 TATTATTATTA
79359000 CTTAGTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 4 0.17
16 18 0.78
17 1 0.04
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTATTATTATTCTTA
Found at i:79360529 original size:21 final size:20
Alignment explanation
Indices: 79360482--79360529 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
79360472 ATCACTGATC
79360482 TATTTTCTTTATTTTCTTTT
1 TATTTTCTTTATTTTCTTTT
* * *
79360502 CAGTTTTCTTTTTTTTTTGTTT
1 TA-TTTTCTTTATTTTCT-TTT
79360524 TATTTT
1 TATTTT
79360530 TATTTCTTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.05
21 17 0.77
22 4 0.18
ACGTcount: A:0.08, C:0.08, G:0.04, T:0.79
Consensus pattern (20 bp):
TATTTTCTTTATTTTCTTTT
Found at i:79364010 original size:12 final size:12
Alignment explanation
Indices: 79363980--79364004 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79363970 TCTCATTGAG
79363980 TATAGAAATGAC
1 TATAGAAATGAC
79363992 TATAGAAATGAC
1 TATAGAAATGAC
79364004 T
1 T
79364005 TGAGAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (12 bp):
TATAGAAATGAC
Found at i:79364376 original size:22 final size:22
Alignment explanation
Indices: 79364335--79364383 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
79364325 AAAGTCGTGG
**
79364335 TGTCATCTCTTCTATGTCGTAA
1 TGTCATCTCTTCTACATCGTAA
*
79364357 TGTCATCTCTTCTACATCGTGA
1 TGTCATCTCTTCTACATCGTAA
79364379 TGTCA
1 TGTCA
79364384 CCAAACAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.43
Consensus pattern (22 bp):
TGTCATCTCTTCTACATCGTAA
Found at i:79367188 original size:16 final size:16
Alignment explanation
Indices: 79367157--79367190 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
79367147 ATGTGAATAA
79367157 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
79367173 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
79367189 TA
1 TA
79367191 ATAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:79367246 original size:34 final size:34
Alignment explanation
Indices: 79367164--79367246 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
79367154 TAATATTATT
79367164 TAAAATTATTATTT-TT-AAAATTTATTAATAAAA
1 TAAAATTA-TATTTATTAAAAATTTATTAATAAAA
** *
79367197 TAAAATTA-AAATATTAAATAATTTATTAATATAA
1 TAAAATTATATTTATTAAA-AATTTATTAATAAAA
79367231 T-AAATTATATTTATTA
1 TAAAATTATATTTATTA
79367247 TATTTATAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
31 2 0.05
32 2 0.05
33 16 0.39
34 21 0.51
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (34 bp):
TAAAATTATATTTATTAAAAATTTATTAATAAAA
Found at i:79367248 original size:9 final size:9
Alignment explanation
Indices: 79367234--79367265 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
79367224 AATATAATAA
79367234 ATTATATTT
1 ATTATATTT
79367243 ATTATATTT
1 ATTATATTT
79367252 A-TA-ATTT
1 ATTATATTT
79367259 ATTATAT
1 ATTATAT
79367266 GACTAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 5 0.24
8 4 0.19
9 12 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
ATTATATTT
Found at i:79367260 original size:16 final size:15
Alignment explanation
Indices: 79367235--79367265 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
79367225 ATATAATAAA
79367235 TTATATTTATTATAT
1 TTATATTTATTATAT
79367250 TTATAATTTATTATAT
1 TTAT-ATTTATTATAT
79367266 GACTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATATTTATTATAT
Found at i:79367260 original size:22 final size:22
Alignment explanation
Indices: 79367201--79367246 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
79367191 ATAAAATAAA
* *
79367201 ATTAAAATATTAAA-TA-ATTT
1 ATTAATATAATAAATTATATTT
79367221 ATTAATATAATAAATTATATTT
1 ATTAATATAATAAATTATATTT
79367243 ATTA
1 ATTA
79367247 TATTTATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAATATAATAAATTATATTT
Found at i:79367586 original size:15 final size:16
Alignment explanation
Indices: 79367566--79367598 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
79367556 GCAGAAAGCA
79367566 TTTTCCGTAAAA-CTT
1 TTTTCCGTAAAACCTT
79367581 TTTTCCGTAAAACCTT
1 TTTTCCGTAAAACCTT
79367597 TT
1 TT
79367599 ACATGTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.24, C:0.21, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTTCCGTAAAACCTT
Found at i:79375617 original size:31 final size:31
Alignment explanation
Indices: 79375580--79375652 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
79375570 TTTTAAGGAG
*
79375580 ATTGTCTTGCATGTATACTATAATGGTTCAC
1 ATTGTCTTGCATGTAAACTATAATGGTTCAC
*
79375611 ATTGTCTTGTATGTAAACTATAATGGTTCAC
1 ATTGTCTTGCATGTAAACTATAATGGTTCAC
79375642 ATTG-CTTGCAT
1 ATTGTCTTGCAT
79375653 TTGAGGATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 6 0.15
31 33 0.85
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.42
Consensus pattern (31 bp):
ATTGTCTTGCATGTAAACTATAATGGTTCAC
Found at i:79376163 original size:15 final size:15
Alignment explanation
Indices: 79376143--79376174 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
79376133 GTTAGAAGTA
79376143 TAAAACCCTTGAAAG
1 TAAAACCCTTGAAAG
79376158 TAAAACCCTTGAAAG
1 TAAAACCCTTGAAAG
79376173 TA
1 TA
79376175 CATCTCTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (15 bp):
TAAAACCCTTGAAAG
Found at i:79377391 original size:8 final size:8
Alignment explanation
Indices: 79377368--79377408 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
79377358 TATTAAGTTT
*
79377368 TATTTTTA
1 TATTATTA
79377376 TA-TATTA
1 TATTATTA
79377383 TATTATTA
1 TATTATTA
79377391 TATTATTA
1 TATTATTA
79377399 TATT-TTA
1 TATTATTA
79377406 TAT
1 TAT
79377409 AAAGTAAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
7 12 0.39
8 19 0.61
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TATTATTA
Found at i:79379474 original size:17 final size:16
Alignment explanation
Indices: 79379448--79379484 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
79379438 CGTCACCTGC
*
79379448 AAAGAAGAAACAAAGG
1 AAAGAAGAAACAAAGA
79379464 AAAGAAAGAAACAAAGA
1 AAAG-AAGAAACAAAGA
79379481 AAAG
1 AAAG
79379485 GCAGTAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.73, C:0.05, G:0.22, T:0.00
Consensus pattern (16 bp):
AAAGAAGAAACAAAGA
Found at i:79380419 original size:3 final size:3
Alignment explanation
Indices: 79380411--79380453 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
79380401 CTTGGCAATT
79380411 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
79380454 CTACTTATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:79380732 original size:278 final size:278
Alignment explanation
Indices: 79380433--79380993 Score: 1104
Period size: 278 Copynumber: 2.0 Consensus size: 278
79380423 TTATTATTAT
79380433 TATTATTATTATTATTATTATCTACTTATCTATACTTATCTTTTTATCAAATTTCGATATATACA
1 TATTATTATTATTATTATTATCTACTTATCTATACTTATCTTTTTATCAAATTTCGATATATACA
79380498 TATATATGTGCATATATTTTATGATATACATATATTTTTTTATGACTTATATATACGCTTACATA
66 TATATATGTGCATATATTTTATGATATACATATATTTTTTTATGACTTATATATACGCTTACATA
*
79380563 TTTTTCTTTATATATATTTTACAACTTATATTCATATCCATATATCTATAAACATATTTTCGTTT
131 TTTTTCTTTATATATATTTTACAACTTATATTCATATCCATATATCTATAAACATATTTTCATTT
79380628 TTATAAATATATATACATACTTACATACAATCTTTAATTTAAAATATACCTTTTTATATACTTTT
196 TTATAAATATATATACATACTTACATACAATCTTTAATTTAAAATATACCTTTTTATATACTTTT
79380693 TAAATTCATATACATATA
261 TAAATTCATATACATATA
79380711 TATTATTATTATTATTATTATCTACTTATCTATACTTATCTTTTTATCAAATTTCGATATATACA
1 TATTATTATTATTATTATTATCTACTTATCTATACTTATCTTTTTATCAAATTTCGATATATACA
79380776 TATATATGTGCATATATTTTATGATATACATATATTTTTTTATGACTTATATATACGCTTACATA
66 TATATATGTGCATATATTTTATGATATACATATATTTTTTTATGACTTATATATACGCTTACATA
*
79380841 TTTTTCTTTATATATATTTTACAACTTATATTCATATCCATATATCTATATACATATTTTCATTT
131 TTTTTCTTTATATATATTTTACAACTTATATTCATATCCATATATCTATAAACATATTTTCATTT
79380906 TTATAAATATATATACATACTTACATACAATCTTTAATTTAAAATATACCTTTTTATATACTTTT
196 TTATAAATATATATACATACTTACATACAATCTTTAATTTAAAATATACCTTTTTATATACTTTT
79380971 TAAATTCATATACATATA
261 TAAATTCATATACATATA
79380989 TATTA
1 TATTA
79380994 CTTTATATAT
Statistics
Matches: 281, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
278 281 1.00
ACGTcount: A:0.35, C:0.12, G:0.02, T:0.51
Consensus pattern (278 bp):
TATTATTATTATTATTATTATCTACTTATCTATACTTATCTTTTTATCAAATTTCGATATATACA
TATATATGTGCATATATTTTATGATATACATATATTTTTTTATGACTTATATATACGCTTACATA
TTTTTCTTTATATATATTTTACAACTTATATTCATATCCATATATCTATAAACATATTTTCATTT
TTATAAATATATATACATACTTACATACAATCTTTAATTTAAAATATACCTTTTTATATACTTTT
TAAATTCATATACATATA
Found at i:79388473 original size:22 final size:22
Alignment explanation
Indices: 79388433--79388477 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
79388423 CGTCAAAAAG
*
79388433 TGATTGTTATTAATAAACGATT
1 TGATTGTTATTAAAAAACGATT
79388455 TGATT-TTATTAAAACAACGATT
1 TGATTGTTATTAAAA-AACGATT
79388477 T
1 T
79388478 TGGTCCACGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (22 bp):
TGATTGTTATTAAAAAACGATT
Found at i:79388916 original size:71 final size:71
Alignment explanation
Indices: 79388794--79388931 Score: 233
Period size: 71 Copynumber: 1.9 Consensus size: 71
79388784 CGGATTTAAA
*
79388794 AAAGGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTGATTCCCGAGATTGTTTAAAACTT
1 AAAGGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATTGTTTAAAACTT
79388859 GAGAAG
66 GAGAAG
* *
79388865 AAAGGGATCATGCCCAGTAGGTTAGGACACGATCTCTTT-TTAATTCTCGAGATTGTTTAAAACT
1 AAAGGGATCATGCCCAGTAAGTTAGGACACGATCT-TTTCTTAATTCCCGAGATTGTTTAAAACT
79388929 TGA
65 TGA
79388932 ATTTGAAAAG
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
71 60 0.95
72 3 0.05
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (71 bp):
AAAGGGATCATGCCCAGTAAGTTAGGACACGATCTTTTCTTAATTCCCGAGATTGTTTAAAACTT
GAGAAG
Found at i:79392710 original size:21 final size:22
Alignment explanation
Indices: 79392671--79392712 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
79392661 CTTATAATTT
*
79392671 TTATAAGAAAAACTTATAAAAC
1 TTATAAGAAAAACTCATAAAAC
79392693 TTATAAGAAAAA-TCATAAAA
1 TTATAAGAAAAACTCATAAAA
79392713 TATTATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.26
Consensus pattern (22 bp):
TTATAAGAAAAACTCATAAAAC
Found at i:79392718 original size:22 final size:22
Alignment explanation
Indices: 79392671--79392720 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
79392661 CTTATAATTT
* *
79392671 TTATAAGAAAAACTTATAAAAC
1 TTATAAGAAAAACTCATAAAAA
79392693 TTATAAGAAAAA-TCATAAAATA
1 TTATAAGAAAAACTCATAAAA-A
79392715 TTATAA
1 TTATAA
79392721 ATATTATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (22 bp):
TTATAAGAAAAACTCATAAAAA
Found at i:79392737 original size:10 final size:9
Alignment explanation
Indices: 79392700--79392818 Score: 82
Period size: 9 Copynumber: 12.8 Consensus size: 9
79392690 AACTTATAAG
*
79392700 AAAAATCAT
1 AAAAATTAT
79392709 AAAATATTAT
1 AAAA-ATTAT
*
79392719 AAATATTAT
1 AAAAATTAT
79392728 AAAAACTTAT
1 AAAAA-TTAT
*
79392738 ATAAAATTAAA
1 A-AAAATT-AT
79392749 AAAAATTA-
1 AAAAATTAT
*
79392757 ATAAATTAT
1 AAAAATTAT
79392766 AAAAA-TAT
1 AAAAATTAT
* *
79392774 AAGAATAAT
1 AAAAATTAT
*
79392783 AAAAAATAT
1 AAAAATTAT
79392792 AAAACA-TATT
1 AAAA-ATTA-T
*
79392802 AAAAATATTT
1 AAAAAT-TAT
79392812 AAAAATT
1 AAAAATT
79392819 TATACAAACT
Statistics
Matches: 88, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
8 14 0.16
9 34 0.39
10 33 0.38
11 7 0.08
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:79392746 original size:20 final size:20
Alignment explanation
Indices: 79392701--79392770 Score: 74
Period size: 19 Copynumber: 3.6 Consensus size: 20
79392691 ACTTATAAGA
* *
79392701 AAAATCATAAAATATTATA-
1 AAAATTATAAAAAATTATAT
* *
79392720 AATATTATAAAAACTTATAT
1 AAAATTATAAAAAATTATAT
*
79392740 AAAATTAAAAAAAATTA-AT
1 AAAATTATAAAAAATTATAT
79392759 -AAATTATAAAAA
1 AAAATTATAAAAA
79392771 TATAAGAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
18 11 0.26
19 17 0.40
20 14 0.33
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATTATAAAAAATTATAT
Found at i:79403576 original size:21 final size:19
Alignment explanation
Indices: 79403540--79403578 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 19
79403530 ATTATCATTA
79403540 TTATTATTGCTT-TTATTT
1 TTATTATTGCTTATTATTT
79403558 TTATTATTTGCCTTATTATTT
1 TTATTA-TTG-CTTATTATTT
79403579 ACCCATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 3 0.17
20 3 0.17
21 6 0.33
ACGTcount: A:0.18, C:0.08, G:0.05, T:0.69
Consensus pattern (19 bp):
TTATTATTGCTTATTATTT
Found at i:79403699 original size:16 final size:16
Alignment explanation
Indices: 79403678--79403708 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79403668 TTTCCAAGTT
*
79403678 TACTTATATATATATC
1 TACTTAGATATATATC
79403694 TACTTAGATATATAT
1 TACTTAGATATATAT
79403709 TATTTATACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.03, T:0.48
Consensus pattern (16 bp):
TACTTAGATATATATC
Found at i:79409460 original size:24 final size:23
Alignment explanation
Indices: 79409405--79409465 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 23
79409395 TTTATGTCCC
*
79409405 AAAATTACAGTGGACTGGACCTT
1 AAAATTACAGTGGACTGAACCTT
* * *
79409428 AAAGTTTACAGTGGATTGAACTTT
1 AAA-ATTACAGTGGACTGAACCTT
79409452 GAAAATTACAGTGG
1 -AAAATTACAGTGG
79409466 GGGCAATTCG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 3 0.10
24 25 0.81
25 3 0.10
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAATTACAGTGGACTGAACCTT
Found at i:79409906 original size:50 final size:50
Alignment explanation
Indices: 79409762--79410327 Score: 229
Period size: 50 Copynumber: 11.4 Consensus size: 50
79409752 ATGAAGTTAC
* *
79409762 CTTCCCTAGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTG
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* ** * * ** * * * * *
79409812 CTTACCTGATATTGCAATTTA-AAAATTGAAGCCACGACGGCGAATCTTA
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* *
79409861 CTTCCCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGACGAATCTTG
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
** * * ** ** * ** * * *
79409911 CTTCCCTGATATTGCAATTTAAAAGATTGAAGCCGCAACGGTGAATCTTA
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* * * *
79409961 CTTTCCTGGC-GATGCAGTGGAGTAGATTGAAGCTACGACGGTGAATCTTG
1 CTTCCCTGGCAG-TGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* * * * ** ** * * * *
79410011 CTTCCCTGACATTGTAATTAAAAAGATTGAAGCCACAACGGCGAATCTTA
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* * ** * * * **
79410061 CTTTCCAGGTGGTGTAGTGGAACAGATTGAAGCTACGACGATGAATCTTG
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* * * * ** ** * * * *
79410111 CTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTA
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* * * * * * * * *
79410161 CTTCTCTGGCGGTGTAGTGGAACAGATTGAAGCTACAACAGTGAATCTTA
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* * * * ** * * * *
79410211 TTTCCCTGACATTGCAGT-TAAAAGATTGAAGCCACGACGGTGAATCTTA
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* * * * * * * *
79410260 CTTCTCTGGCGGTGTAATGGAACAAATTGAAGCTACGAAGGCGAATCTTG
1 CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
* * *
79410310 TTTCCCTGACATTGCAGT
1 CTTCCCTGGCAGTGCAGT
79410328 TAAATAGACG
Statistics
Matches: 366, Mismatches: 146, Indels: 8
0.70 0.28 0.02
Matches are distributed among these distances:
49 72 0.20
50 294 0.80
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (50 bp):
CTTCCCTGGCAGTGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTG
Found at i:79409999 original size:100 final size:100
Alignment explanation
Indices: 79409773--79410325 Score: 684
Period size: 100 Copynumber: 5.5 Consensus size: 100
79409763 TTCCCTAGCA
* * * * *
79409773 GTGCAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTACCTGATATTGCAATTTAAAA-A
1 GTGCAGTGGAACAGATTGAAGCTACGACGATGAATCTTGCTTCCCTGACATTGCAATTTAAAAGA
* * *
79409837 TTGAAGCCACGACGGCGAATCTTACTTCCCTGGCA
66 TTGAAGCCACAACGGCGAATCTTACTTTCCTGGCG
* * * * *
79409872 GTACAGTGGAGCAGATTAAAGCTACGACGACGAATCTTGCTTCCCTGATATTGCAATTTAAAAGA
1 GTGCAGTGGAACAGATTGAAGCTACGACGATGAATCTTGCTTCCCTGACATTGCAATTTAAAAGA
* *
79409937 TTGAAGCCGCAACGGTGAATCTTACTTTCCTGGCG
66 TTGAAGCCACAACGGCGAATCTTACTTTCCTGGCG
* ** * * *
79409972 ATGCAGTGGAGTAGATTGAAGCTACGACGGTGAATCTTGCTTCCCTGACATTGTAATTAAAAAGA
1 GTGCAGTGGAACAGATTGAAGCTACGACGATGAATCTTGCTTCCCTGACATTGCAATTTAAAAGA
* *
79410037 TTGAAGCCACAACGGCGAATCTTACTTTCCAGGTG
66 TTGAAGCCACAACGGCGAATCTTACTTTCCTGGCG
* * *
79410072 GTGTAGTGGAACAGATTGAAGCTACGACGATGAATCTTGCTTCCCCGACATTGCAATTAAAAAGA
1 GTGCAGTGGAACAGATTGAAGCTACGACGATGAATCTTGCTTCCCTGACATTGCAATTTAAAAGA
79410137 TTGAAGCCACAACGGCGAATCTTAC-TTCTCTGGCG
66 TTGAAGCCACAACGGCGAATCTTACTTTC-CTGGCG
* * ** *
79410172 GTGTAGTGGAACAGATTGAAGCTACAAC-AGTGAATCTTATTTCCCTGACATTGC-AGTTAAAAG
1 GTGCAGTGGAACAGATTGAAGCTACGACGA-TGAATCTTGCTTCCCTGACATTGCAATTTAAAAG
* *
79410235 ATTGAAGCCACGACGGTGAATCTTAC-TTCTCTGGCG
65 ATTGAAGCCACAACGGCGAATCTTACTTTC-CTGGCG
* * * * ** *
79410271 GTGTAATGGAACAAATTGAAGCTACGAAGGCGAATCTTGTTTCCCTGACATTGCA
1 GTGCAGTGGAACAGATTGAAGCTACGACGATGAATCTTGCTTCCCTGACATTGCA
79410326 GTTAAATAGA
Statistics
Matches: 403, Mismatches: 46, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
99 150 0.37
100 253 0.63
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (100 bp):
GTGCAGTGGAACAGATTGAAGCTACGACGATGAATCTTGCTTCCCTGACATTGCAATTTAAAAGA
TTGAAGCCACAACGGCGAATCTTACTTTCCTGGCG
Found at i:79410578 original size:130 final size:130
Alignment explanation
Indices: 79410339--79411114 Score: 1207
Period size: 130 Copynumber: 6.0 Consensus size: 130
79410329 AAATAGACGA
* *
79410339 AAGAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATCAC-AGATCTTATCTCT
1 AAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATCTTATCTCT
* * * *
79410403 CTTAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACAG
66 CTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAG
*
79410468 AAGAAACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAAGATCTTATCTCT
1 AAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATCTTATCTCT
* *
79410533 CTGAAGTTGCAGTAGAGCAGATCACATCCAGTCATATCTCTCTGAAGTTGCAGTGGAGCAGACAG
66 CTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAG
* *
79410598 AAGAAACCAATCCTATCTCCCTGAATTTGCAGTGGAGTGGATTAAAACCACAAGATCTTATCTCT
1 AAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATCTTATCTCT
* * *
79410663 CTGAAGTTGGAGTAGAGCAGATCACATCCAGTCTTATCTCACTGAAGTTGTAGTGGAGCAGACAG
66 CTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAG
* *
79410728 AAGAAACCAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTGAAACCACAAGATCTTATCTCT
1 AAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATCTTATCTCT
* *
79410793 CTGAAGTTGCAGTAGAACAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAA
66 CTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAG
79410858 AAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATCTTATCTCT
1 AAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATCTTATCTCT
* * * *
79410923 CTAAAGTTGCAGTAGAGCAGATCACATCTAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAA
66 CTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAG
** * * * * * * *
79410988 AAGCTACTAATCCTATCTCCCTAAAGTTACAGTGGAGCAGATTAAAA-CA-ATGAATCATATATC
1 AAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAG-ATCTTATCTC
* * * *
79411051 TATGAAGTTGCGGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGAC
65 TCTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
79411115 TAAAACCAAA
Statistics
Matches: 598, Mismatches: 47, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
128 2 0.00
129 115 0.19
130 481 0.80
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (130 bp):
AAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAAGATCTTATCTCT
CTGAAGTTGCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAG
Found at i:79412497 original size:14 final size:14
Alignment explanation
Indices: 79412475--79412504 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
79412465 GACTATGTTA
*
79412475 TATATATACATACT
1 TATACATACATACT
79412489 TATACATACATACT
1 TATACATACATACT
79412503 TA
1 TA
79412505 CATTTTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (14 bp):
TATACATACATACT
Found at i:79423802 original size:47 final size:47
Alignment explanation
Indices: 79423724--79424136 Score: 727
Period size: 47 Copynumber: 8.7 Consensus size: 47
79423714 CCCTTCGGGA
* * * * * *
79423724 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79423771 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79423818 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79423865 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79423912 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79423959 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79424006 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79424053 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79424102 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
79424137 AGAATCCTAA
Statistics
Matches: 352, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 306 0.87
49 46 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79433011 original size:44 final size:44
Alignment explanation
Indices: 79432914--79433026 Score: 104
Period size: 44 Copynumber: 2.6 Consensus size: 44
79432904 AAGAATTTCA
* * * **
79432914 GATCTTATCTCCTTGAGATTACAGTGGAGCAGATTGAAGCCAGT
1 GATCTTATCTCCCTGAGATTACAGTGGACCAGATTAAAGAAAGT
* * * *
79432958 AATCCTATCTCCCTGAGATTACAGTGGACCGGATTAAAATAAAG-
1 GATCTTATCTCCCTGAGATTACAGTGGACCAGATT-AAAGAAAGT
*
79433002 GATCTTATCTCTCTGA-AGTTACAGT
1 GATCTTATCTCCCTGAGA-TTACAGT
79433027 AGAGTAGATC
Statistics
Matches: 55, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
43 1 0.02
44 50 0.91
45 4 0.07
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (44 bp):
GATCTTATCTCCCTGAGATTACAGTGGACCAGATTAAAGAAAGT
Found at i:79433065 original size:41 final size:43
Alignment explanation
Indices: 79433004--79433157 Score: 152
Period size: 46 Copynumber: 3.5 Consensus size: 43
79432994 AAATAAAGGA
* * *
79433004 TCTTATCTCTCTGA-AGTTACAGTAGAGTAGATC-GCA-TCAGG
1 TCTTATCTCCCTGAGA-TTACAGTAGAATAGACCAGCATTCAGG
*
79433045 TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGCATTTCAGG
1 TCTTATCTCCCTGAGATTACAGTAGAATAGACC--AGCA-TTCAGG
* * **
79433091 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAGGAATTTCAAA
1 TCTTATCTCCCTGAGATTACAGTAGAATAGACC-A-GCA-TTCAGG
79433137 TCTTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACA
79433158 ACGGAGCAGA
Statistics
Matches: 98, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
41 27 0.28
42 1 0.01
44 3 0.03
45 1 0.01
46 66 0.67
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (43 bp):
TCTTATCTCCCTGAGATTACAGTAGAATAGACCAGCATTCAGG
Found at i:79433107 original size:46 final size:46
Alignment explanation
Indices: 79433040--79433157 Score: 191
Period size: 46 Copynumber: 2.6 Consensus size: 46
79433030 GTAGATCGCA
*
79433040 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGCATT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATT
* *
79433086 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAGGAATT
1 TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATT
**
79433132 TCAAATCTTATCTCCCTGAGATTACA
1 TCAGGTCTTATCTCCCTGAGATTACA
79433158 ACGGAGCAGA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (46 bp):
TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATT
Found at i:79433445 original size:50 final size:50
Alignment explanation
Indices: 79433327--79433477 Score: 146
Period size: 50 Copynumber: 3.0 Consensus size: 50
79433317 ACTCCCCTAG
*
79433327 CGGTGCAGTGGAACAGATTAAAGCCACAACGCTGAATCTTGCTTCCCTGA
1 CGGTGCAGTGGAACAGATTAAAGCCACAACGCTGAATCTTGCTTCCCAGA
** * * * ** *
79433377 CATTGCAGT-TAAGAAGATTAAAGCTACTGCAGC-GAATTTTGCTTCCCAGA
1 CGGTGCAGTGGAA-CAGATTAAAGCCACAAC-GCTGAATCTTGCTTCCCAGA
* * *
79433427 CGGTGCAGTGGAACAGATTGAAGCCGCAATGGC-GAATCTTGCTTCCCAGA
1 CGGTGCAGTGGAACAGATTAAAGCCACAA-CGCTGAATCTTGCTTCCCAGA
79433477 C
1 C
79433478 ATCACAGTTA
Statistics
Matches: 77, Mismatches: 20, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
49 2 0.03
50 71 0.92
51 4 0.05
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.23
Consensus pattern (50 bp):
CGGTGCAGTGGAACAGATTAAAGCCACAACGCTGAATCTTGCTTCCCAGA
Found at i:79441410 original size:21 final size:19
Alignment explanation
Indices: 79441386--79441437 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 19
79441376 CTATCCGACA
79441386 TTAATCTTTCAATTCAATTAC
1 TTAATCTTTCAATTC--TTAC
79441407 TTAATCCTTTTCAATTCTTAC
1 TTAAT-C-TTTCAATTCTTAC
*
79441428 CTAATCTTTC
1 TTAATCTTTC
79441438 GACAATCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 4 0.14
20 1 0.04
21 13 0.46
22 1 0.04
23 9 0.32
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAATCTTTCAATTCTTAC
Found at i:79443758 original size:40 final size:39
Alignment explanation
Indices: 79443714--79443818 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
79443704 AGTGACCATA
*
79443714 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
79443754 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
79443792 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
79443819 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:79443775 original size:39 final size:40
Alignment explanation
Indices: 79443674--79443837 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
79443664 TTGAATGATG
* *
79443674 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
79443714 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
79443753 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
79443793 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
79443833 TCCGG
1 TCCGG
79443838 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:79443837 original size:79 final size:80
Alignment explanation
Indices: 79443674--79443824 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
79443664 TTGAATGATG
*
79443674 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
79443739 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
79443754 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
79443816 TTGAACGAG
64 TTGAACGAG
79443825 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:79448902 original size:27 final size:26
Alignment explanation
Indices: 79448875--79449054 Score: 184
Period size: 27 Copynumber: 6.7 Consensus size: 26
79448865 ATGATCGAAT
79448875 TACCCTCGAAA-GGTAAAATTACCAAA
1 TACCCTC-AAAGGGTAAAATTACCAAA
* *
79448901 TTACCCTTAAAGAGTAAAATTACCGAAA
1 -TACCCTCAAAGGGTAAAATTACC-AAA
*
79448929 TACCTTCAAAGGGTAAAATTACCGAAA
1 TACCCTCAAAGGGTAAAATTACC-AAA
*
79448956 TACCCTCAAAGGGTAAAATTATCGAAA
1 TACCCTCAAAGGGTAAAATTA-CCAAA
* *
79448983 T-CCTTCAAAGGGTAAAATTACTAAAA
1 TACCCTCAAAGGGTAAAATTAC-CAAA
* * *
79449009 TGCCCTTAAAGGGTAAAATTACTAAAA
1 TACCCTCAAAGGGTAAAATTAC-CAAA
* *
79449036 TACCCCCAAAAGGTAAAAT
1 TACCCTCAAAGGGTAAAAT
79449055 GACTGTTATA
Statistics
Matches: 133, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
25 1 0.01
26 25 0.19
27 103 0.77
28 4 0.03
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.23
Consensus pattern (26 bp):
TACCCTCAAAGGGTAAAATTACCAAA
Found at i:79448944 original size:54 final size:53
Alignment explanation
Indices: 79448858--79449054 Score: 218
Period size: 54 Copynumber: 3.7 Consensus size: 53
79448848 TGTGAATCAT
* * *
79448858 GGGTAAAATGATCGAATTACCCTCGAAA-GGTAAAATTACCAAATTACCCTTAAA
1 GGGTAAAATTACCGAAATACCCTC-AAAGGGTAAAATTACCAAA-TACCCTTAAA
* * *
79448912 GAGTAAAATTACCGAAATACCTTCAAAGGGTAAAATTACCGAAATACCCTCAAA
1 GGGTAAAATTACCGAAATACCCTCAAAGGGTAAAATTACC-AAATACCCTTAAA
* * * *
79448966 GGGTAAAATTATCGAAAT-CCTTCAAAGGGTAAAATTACTAAAATGCCCTTAAA
1 GGGTAAAATTACCGAAATACCCTCAAAGGGTAAAATTAC-CAAATACCCTTAAA
** * *
79449019 GGGTAAAATTACTAAAATACCCCCAAAAGGTAAAAT
1 GGGTAAAATTACCGAAATACCCTCAAAGGGTAAAAT
79449055 GACTGTTATA
Statistics
Matches: 122, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
53 49 0.40
54 70 0.57
55 3 0.02
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (53 bp):
GGGTAAAATTACCGAAATACCCTCAAAGGGTAAAATTACCAAATACCCTTAAA
Found at i:79449020 original size:53 final size:54
Alignment explanation
Indices: 79448858--79449029 Score: 231
Period size: 54 Copynumber: 3.2 Consensus size: 54
79448848 TGTGAATCAT
* * * *
79448858 GGGTAAAATGATCGAATTACCCTCGAAA-GGTAAAATTACCAAATTACCCTTAAA
1 GGGTAAAATTATCGAAATACCTTC-AAAGGGTAAAATTACCAAAATACCCTTAAA
* * * *
79448912 GAGTAAAATTACCGAAATACCTTCAAAGGGTAAAATTACCGAAATACCCTCAAA
1 GGGTAAAATTATCGAAATACCTTCAAAGGGTAAAATTACCAAAATACCCTTAAA
* *
79448966 GGGTAAAATTATCGAAAT-CCTTCAAAGGGTAAAATTACTAAAATGCCCTTAAA
1 GGGTAAAATTATCGAAATACCTTCAAAGGGTAAAATTACCAAAATACCCTTAAA
79449019 GGGTAAAATTA
1 GGGTAAAATTA
79449030 CTAAAATACC
Statistics
Matches: 103, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
53 45 0.44
54 58 0.56
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (54 bp):
GGGTAAAATTATCGAAATACCTTCAAAGGGTAAAATTACCAAAATACCCTTAAA
Found at i:79449026 original size:80 final size:79
Alignment explanation
Indices: 79448858--79449054 Score: 211
Period size: 80 Copynumber: 2.4 Consensus size: 79
79448848 TGTGAATCAT
* * *
79448858 GGGTAAAATGATCGAATTACCCTCGAAAGGTAAAATTACCAAATTACCCTTAAAGAGTAAAATTA
1 GGGTAAAATTACCGAAATACCCTC-AAAGGTAAAATTACCAAATTA-CCTTAAAGAGTAAAATTA
*
79448923 CCGAAATACCTTCAAA
64 CCAAAATACCTTCAAA
* *
79448939 GGGTAAAATTACCGAAATACCCTCAAAGGGTAAAATTATCGAAA-T-CCTTCAAAGGGTAAAATT
1 GGGTAAAATTACCGAAATACCCTCAAA-GGTAAAATTA-CCAAATTACCTT-AAAGAGTAAAATT
* *
79449002 ACTAAAATGCCCTT-AAA
63 ACCAAAAT-ACCTTCAAA
** *
79449019 GGGTAAAATTACTAAAATACCCCCAAAAGGTAAAAT
1 GGGTAAAATTACCGAAATACCCTC-AAAGGTAAAAT
79449055 GACTGTTATA
Statistics
Matches: 100, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
79 4 0.04
80 53 0.53
81 39 0.39
82 4 0.04
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (79 bp):
GGGTAAAATTACCGAAATACCCTCAAAGGTAAAATTACCAAATTACCTTAAAGAGTAAAATTACC
AAAATACCTTCAAA
Found at i:79449066 original size:107 final size:108
Alignment explanation
Indices: 79448858--79449057 Score: 260
Period size: 107 Copynumber: 1.9 Consensus size: 108
79448848 TGTGAATCAT
* *
79448858 GGGTAAAATGATCGAATTACCCTCGAAAGGTAAAATTACCAAATTACCCTTAAAGAGTAAAATTA
1 GGGTAAAATGATCGAAATACCCTCGAAAGGTAAAATTACCAAAATACCCTTAAAGAGTAAAATTA
* ** * *
79448923 CCGAAATACCTTCAAAGGGTAAAATTACCGAAATACCCTCAAA
66 CCAAAATACCCCCAAAAGGTAAAATGACCGAAATACCCTCAAA
* * * * *
79448966 GGGTAAAATTATCGAAAT-CCTTC-AAAGGGTAAAATTACTAAAATGCCCTTAAAGGGTAAAATT
1 GGGTAAAATGATCGAAATACCCTCGAAA-GGTAAAATTACCAAAATACCCTTAAAGAGTAAAATT
*
79449029 ACTAAAATACCCCCAAAAGGTAAAATGAC
65 ACCAAAATACCCCCAAAAGGTAAAATGAC
79449058 TGTTATACCT
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
106 3 0.04
107 59 0.76
108 16 0.21
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (108 bp):
GGGTAAAATGATCGAAATACCCTCGAAAGGTAAAATTACCAAAATACCCTTAAAGAGTAAAATTA
CCAAAATACCCCCAAAAGGTAAAATGACCGAAATACCCTCAAA
Found at i:79449469 original size:30 final size:31
Alignment explanation
Indices: 79449414--79449472 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
79449404 ACTGCATCGT
*
79449414 ACTGATTACTGTATTGGGCTAAGGCCCACTC
1 ACTGATTACTGTACTGGGCTAAGGCCCACTC
* *
79449445 ACTG-TTATTGTACTGGGCTTAGGCCCAC
1 ACTGATTACTGTACTGGGCTAAGGCCCAC
79449473 ACCGTACTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (31 bp):
ACTGATTACTGTACTGGGCTAAGGCCCACTC
Found at i:79450099 original size:20 final size:20
Alignment explanation
Indices: 79450076--79450114 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
79450066 TTAAATTAAC
*
79450076 GAAACGAGTTTTATCAACAT
1 GAAACGAATTTTATCAACAT
*
79450096 GAAATGAATTTTATCAACA
1 GAAACGAATTTTATCAACA
79450115 AGTCTAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (20 bp):
GAAACGAATTTTATCAACAT
Found at i:79453629 original size:614 final size:614
Alignment explanation
Indices: 79452462--79453692 Score: 2435
Period size: 614 Copynumber: 2.0 Consensus size: 614
79452452 GGATCGAAGA
79452462 TTTATTCAACCTAGCGTGTCTCCATGGAGAACACCAGTGCTATTCGTTAAGAAGAATGATGGGAC
1 TTTATTCAACCTAGCGTGTCTCCATGGAGAACACCAGTGCTATTCGTTAAGAAGAATGATGGGAC
79452527 TATGCACATGTGCATCGATTATCAGCAACTGTATAAGCTGACTATCAAGAATAAGTATCTCTTAC
66 TATGCACATGTGCATCGATTATCAGCAACTGTATAAGCTGACTATCAAGAATAAGTATCTCTTAC
79452592 CGAGGATAGATGATTTATTTGATCAGTTGCAAGGAGCATCAGTTTTCTCCAAAATAGATCTTCAT
131 CGAGGATAGATGATTTATTTGATCAGTTGCAAGGAGCATCAGTTTTCTCCAAAATAGATCTTCAT
79452657 TCTGGGTACCATCAATTGAGAGTTGAAGAGGTTGATGTGTATAAGACTTCATTTAGGACTCGTTA
196 TCTGGGTACCATCAATTGAGAGTTGAAGAGGTTGATGTGTATAAGACTTCATTTAGGACTCGTTA
79452722 TGGTCATTACGAGTTCCTAGTAATGTCGTTTGGGCTAATGAATGCACCAGCTCCTTCATGGACCT
261 TGGTCATTACGAGTTCCTAGTAATGTCGTTTGGGCTAATGAATGCACCAGCTCCTTCATGGACCT
* *
79452787 AATGAACCGAGTATTCCAACCCTCCTTGGATTGATTAGTGGTGGTATTCATAGACGATATCTTGG
326 AATGAACCGAGTATTCCAACCCTACTTAGATTGATTAGTGGTGGTATTCATAGACGATATCTTGG
79452852 TGTATTTGAGAACTGAGGATGAGCGTGATGCACATCTCCAAATTGTTCTGTAGATTTTAAGGGAG
391 TGTATTTGAGAACTGAGGATGAGCGTGATGCACATCTCCAAATTGTTCTGTAGATTTTAAGGGAG
79452917 AAACAACTATATGCTAAGTTCAACAAGTGTGAGTTCTGGCTGCGAGAAGTGACAATTCTGGGTCA
456 AAACAACTATATGCTAAGTTCAACAAGTGTGAGTTCTGGCTGCGAGAAGTGACAATTCTGGGTCA
79452982 CGTGGTATATGCCGAAAAGATTAGGGTTGATCCTCAGAAAATTGAAACTATACTGGATTAGAAAC
521 CGTGGTATATGCCGAAAAGATTAGGGTTGATCCTCAGAAAATTGAAACTATACTGGATTAGAAAC
79453047 CACCTAAGACCGTATCTGAGATTTAAAGT
586 CACCTAAGACCGTATCTGAGATTTAAAGT
79453076 TTTATTCAACCTAGCGTGTCTCCATGGAGAACACCAGTGCTATTCGTTAAGAAGAATGATGGGAC
1 TTTATTCAACCTAGCGTGTCTCCATGGAGAACACCAGTGCTATTCGTTAAGAAGAATGATGGGAC
79453141 TATGCACATGTGCATCGATTATCAGCAACTGTATAAGCTGACTATCAAGAATAAGTATCTCTTAC
66 TATGCACATGTGCATCGATTATCAGCAACTGTATAAGCTGACTATCAAGAATAAGTATCTCTTAC
79453206 CGAGGATAGATGATTTATTTGATCAGTTGCAAGGAGCATCAGTTTTCTCCAAAATAGATCTTCAT
131 CGAGGATAGATGATTTATTTGATCAGTTGCAAGGAGCATCAGTTTTCTCCAAAATAGATCTTCAT
79453271 TCTGGGTACCATCAATTGAGAGTTGAAGAGGTTGATGTGTATAAGACTTCATTTAGGACTCGTTA
196 TCTGGGTACCATCAATTGAGAGTTGAAGAGGTTGATGTGTATAAGACTTCATTTAGGACTCGTTA
*
79453336 TGGTCATTACGAGTTCCTAGTAATGTCGTTTGGGGTAATGAATGCACCAGCTCCTTCATGGACCT
261 TGGTCATTACGAGTTCCTAGTAATGTCGTTTGGGCTAATGAATGCACCAGCTCCTTCATGGACCT
79453401 AATGAACCGAGTATTCCAACCCTACTTAGATTGATTAGTGGTGGTATTCATAGACGATATCTTGG
326 AATGAACCGAGTATTCCAACCCTACTTAGATTGATTAGTGGTGGTATTCATAGACGATATCTTGG
79453466 TGTATTTGAGAACTGAGGATGAGCGTGATGCACATCTCCAAATTGTTCTGTAGATTTTAAGGGAG
391 TGTATTTGAGAACTGAGGATGAGCGTGATGCACATCTCCAAATTGTTCTGTAGATTTTAAGGGAG
79453531 AAACAACTATATGCTAAGTTCAACAAGTGTGAGTTCTGGCTGCGAGAAGTGACAATTCTGGGTCA
456 AAACAACTATATGCTAAGTTCAACAAGTGTGAGTTCTGGCTGCGAGAAGTGACAATTCTGGGTCA
79453596 CGTGGTATATGCCGAAAAGATTAGGGTTGATCCTCAGAAAATTGAAACTATACTGGATTAGAAAC
521 CGTGGTATATGCCGAAAAGATTAGGGTTGATCCTCAGAAAATTGAAACTATACTGGATTAGAAAC
79453661 CACCTAAGACCGTATCTGAGATTTAAAGT
586 CACCTAAGACCGTATCTGAGATTTAAAGT
79453690 TTT
1 TTT
79453693 CTAAGTCTGC
Statistics
Matches: 614, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
614 614 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31
Consensus pattern (614 bp):
TTTATTCAACCTAGCGTGTCTCCATGGAGAACACCAGTGCTATTCGTTAAGAAGAATGATGGGAC
TATGCACATGTGCATCGATTATCAGCAACTGTATAAGCTGACTATCAAGAATAAGTATCTCTTAC
CGAGGATAGATGATTTATTTGATCAGTTGCAAGGAGCATCAGTTTTCTCCAAAATAGATCTTCAT
TCTGGGTACCATCAATTGAGAGTTGAAGAGGTTGATGTGTATAAGACTTCATTTAGGACTCGTTA
TGGTCATTACGAGTTCCTAGTAATGTCGTTTGGGCTAATGAATGCACCAGCTCCTTCATGGACCT
AATGAACCGAGTATTCCAACCCTACTTAGATTGATTAGTGGTGGTATTCATAGACGATATCTTGG
TGTATTTGAGAACTGAGGATGAGCGTGATGCACATCTCCAAATTGTTCTGTAGATTTTAAGGGAG
AAACAACTATATGCTAAGTTCAACAAGTGTGAGTTCTGGCTGCGAGAAGTGACAATTCTGGGTCA
CGTGGTATATGCCGAAAAGATTAGGGTTGATCCTCAGAAAATTGAAACTATACTGGATTAGAAAC
CACCTAAGACCGTATCTGAGATTTAAAGT
Found at i:79456478 original size:18 final size:19
Alignment explanation
Indices: 79456457--79456493 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
79456447 CATCTTTTCT
*
79456457 TTTCTTCTT-TCTTTTTGG
1 TTTCTTCTTCTCTTGTTGG
79456475 TTTCTTCTTCTCTTGTTGG
1 TTTCTTCTTCTCTTGTTGG
79456494 CGATTTTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.00, C:0.19, G:0.14, T:0.68
Consensus pattern (19 bp):
TTTCTTCTTCTCTTGTTGG
Found at i:79457454 original size:27 final size:27
Alignment explanation
Indices: 79457391--79457455 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
79457381 TACGAATCGT
* *
79457391 GGGTAAAATGATCGACTTACCCCCGAA
1 GGGTAAAATTATCGAATTACCCCCGAA
*
79457418 GGGTAAAATTATTGAATTACCCCCGAA
1 GGGTAAAATTATCGAATTACCCCCGAA
79457445 GGGTAAAATTA
1 GGGTAAAATTA
79457456 CTAAAATATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (27 bp):
GGGTAAAATTATCGAATTACCCCCGAA
Done.