Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 26 of 313
Found at i:8860398 original size:43 final size:43
Alignment explanation
Indices: 8860350--8860648 Score: 490
Period size: 43 Copynumber: 7.0 Consensus size: 43
8860340 GCTGGTATTA
* * *
8860350 TATTCGGGCTTTCGTGCCTAGCAGGCTTTGTTCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
8860393 TATTCGGGCCTTCGTCCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
8860436 TATTCGGGCCTCCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
8860479 TATTCGGGCCTCCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
8860522 TATTCAGGCCTTCATGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
8860565 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
8860608 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
8860649 CTTCGTGTCG
Statistics
Matches: 238, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 238 1.00
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:8860666 original size:59 final size:59
Alignment explanation
Indices: 8860589--8861474 Score: 1745
Period size: 59 Copynumber: 15.0 Consensus size: 59
8860579 TGCCTAGCAG
*
8860589 GCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8860648 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8860707 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8860766 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8860825 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8860884 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8860943 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8861002 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8861061 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8861120 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8861179 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8861238 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8861297 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
*
8861356 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAG
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
*
8861415 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
8861474 G
1 G
8861475 TGTATTCGGG
Statistics
Matches: 823, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 823 1.00
ACGTcount: A:0.10, C:0.24, G:0.34, T:0.32
Consensus pattern (59 bp):
GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
Found at i:8860739 original size:102 final size:102
Alignment explanation
Indices: 8860503--8860766 Score: 283
Period size: 102 Copynumber: 2.6 Consensus size: 102
8860493 TGCCTAGCAG
* * * *
8860503 GCTTCGTGCCAGTGATGTGTATTCAGGCCTTCATGCCTAGCAGGCTTCGTGTCGGTGATGTGTAT
1 GCTTCGTGTCGGTGATGTGTATTCAGGCCTTCGTACCTAGCAGGCTTCGTGTCGGTGATGTGTAT
*
8860568 TCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGAT
66 TCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
* * * *
8860605 G--T-GTATTCGG-GCCTTCGTGCCTA-GCAGG-CTTCGTACCGGT-G-ATGCTTCGTGTCGGTG
1 GCTTCGT-GTCGGTG--AT-GTG--TATTCAGGCCTTCGTACC--TAGCAGGCTTCGTGTCGGTG
8860662 ATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
58 ATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
* * **
8860707 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATG
1 GCTTCGTGTCGGTGATGTGTATTCAGGCCTTCGTACCTAGCAGGCTTCGTGTCGGTGATG
8860767 CTTCGTGTCG
Statistics
Matches: 129, Mismatches: 17, Indels: 32
0.72 0.10 0.18
Matches are distributed among these distances:
99 3 0.02
100 6 0.05
101 5 0.04
102 98 0.76
103 6 0.05
104 8 0.06
105 3 0.02
ACGTcount: A:0.11, C:0.24, G:0.33, T:0.31
Consensus pattern (102 bp):
GCTTCGTGTCGGTGATGTGTATTCAGGCCTTCGTACCTAGCAGGCTTCGTGTCGGTGATGTGTAT
TCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
Found at i:8861413 original size:102 final size:102
Alignment explanation
Indices: 8861297--8861545 Score: 276
Period size: 102 Copynumber: 2.4 Consensus size: 102
8861287 TACCGGTGAT
** *
8861297 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGT-G-ATGCTT
1 GCTTCGTACCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACC--TAGCAGGCTT
*
8861360 CGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
64 CGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
* * ** ** * * *
8861399 GCTTCGTACCGGTGA-G-G-CTTCGTGTCGGT-GATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
1 GCTTCGTACCGGTGATGTGTATTCG-GGCCTTCG-TGCCTA-GCAGG-CTTCGTACCTAGCAGGC
8861460 TTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
62 TTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
*
8861501 GCTTCGTACCGGTGATGTGTATTCGGGCCTTCGTGCCTAGTAGGC
1 GCTTCGTACCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
8861546 GTAATGCCAG
Statistics
Matches: 115, Mismatches: 22, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
99 5 0.04
100 9 0.08
101 5 0.04
102 80 0.70
103 3 0.03
104 8 0.07
105 5 0.04
ACGTcount: A:0.10, C:0.24, G:0.35, T:0.31
Consensus pattern (102 bp):
GCTTCGTACCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCTAGCAGGCTTCG
TGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
Found at i:8861447 original size:43 final size:43
Alignment explanation
Indices: 8861413--8861545 Score: 239
Period size: 43 Copynumber: 3.1 Consensus size: 43
8861403 CGTACCGGTG
*
8861413 AGGCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
8861456 AGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
* *
8861499 AGGCTTCGTACCGGTGATGTGTATTCGGGCCTTCGTGCCTAGT
1 AGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
8861542 AGGC
1 AGGC
8861546 GTAATGCCAG
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.11, C:0.24, G:0.35, T:0.31
Consensus pattern (43 bp):
AGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
Found at i:8861742 original size:38 final size:38
Alignment explanation
Indices: 8861686--8861779 Score: 134
Period size: 38 Copynumber: 2.5 Consensus size: 38
8861676 TGGTAAATAG
** *
8861686 TTCGTGCTGGTAAAATATCCAGGTTAAATCCCGCAGGC
1 TTCGTGCTGGTATTATATCCAGGATAAATCCCGCAGGC
*
8861724 TTCGTGCTGGTATTATATCCGGGATAAATCCCGCAGGC
1 TTCGTGCTGGTATTATATCCAGGATAAATCCCGCAGGC
* *
8861762 CTAGTGCTGGTATTATAT
1 TTCGTGCTGGTATTATAT
8861780 TCGGGCCTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.31
Consensus pattern (38 bp):
TTCGTGCTGGTATTATATCCAGGATAAATCCCGCAGGC
Found at i:8861831 original size:43 final size:43
Alignment explanation
Indices: 8861756--8861944 Score: 249
Period size: 43 Copynumber: 4.4 Consensus size: 43
8861746 GATAAATCCC
* * * *
8861756 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCTTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
8861797 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTCCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
8861840 GCAGGCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
8861883 GCAGGCTTCA-TGCCGGTGATGTGTATTTGGGCCTTCGTACCTA
1 GCAGGCTT-AGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
8861926 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
8861945 AATGATATGT
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
41 15 0.11
42 3 0.02
43 113 0.86
ACGTcount: A:0.13, C:0.23, G:0.33, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:8864002 original size:41 final size:41
Alignment explanation
Indices: 8863949--8864136 Score: 288
Period size: 41 Copynumber: 4.6 Consensus size: 41
8863939 CGCTGACTCA
* *
8863949 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
8863990 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
8864030 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
8864071 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
8864112 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
8864137 TTTTAAACCC
Statistics
Matches: 130, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 32 0.25
41 98 0.75
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:8864037 original size:81 final size:82
Alignment explanation
Indices: 8863949--8864136 Score: 288
Period size: 81 Copynumber: 2.3 Consensus size: 82
8863939 CGCTGACTCA
* * * * * *
8863949 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAAGGCCCTTCGAAACTAGGTTC-
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCA
*
8864013 GGTTATGACACTGGCTC
66 GATTATGACACTGGCTC
* *
8864030 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCA
8864095 GATTATGACACTGGCTC
66 GATTATGACACTGGCTC
8864112 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
8864137 TTTTAAACCC
Statistics
Matches: 97, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
81 56 0.58
82 41 0.42
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (82 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAAAAGCCCTTCGAAACCAAGCTCA
GATTATGACACTGGCTC
Found at i:8871827 original size:29 final size:28
Alignment explanation
Indices: 8871792--8871850 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
8871782 TTATATTCAC
*
8871792 ATGGCCC-ATTAGGTCCAAATCACATTTAT
1 ATGGCCCTA-TAGGCCCAAATCAC-TTTAT
8871821 ATGGCCCTATAGGCCCAAATCACTTTAT
1 ATGGCCCTATAGGCCCAAATCACTTTAT
8871849 AT
1 AT
8871851 TCATGCTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 7 0.25
29 20 0.71
30 1 0.04
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (28 bp):
ATGGCCCTATAGGCCCAAATCACTTTAT
Found at i:8877185 original size:47 final size:47
Alignment explanation
Indices: 8877002--8877224 Score: 165
Period size: 47 Copynumber: 4.7 Consensus size: 47
8876992 TATACTATGA
* * *
8877002 GAGCCAGTGCAAGACCATGTCTGGGACATGGTATC-AGC-ATCAAGATGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGA-CTAT-GAGAT-AT
* * * * * * * *
8877050 GTGCTAGCGTAAGA-CTTGTTTGGGACATGCATCGCCCT-CGAGATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCG-ACTATGAGATAT
* *
8877096 AAGCCAGTGTAAGA-CATGTCTAGGACATGCATCGACTATGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGACTATGAGAT-AT
* * * *
8877143 -AGTCAGTGTAAGACCATGTTTGGGACATGGCATTGAGT-TGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGACTATGAGATAT
8877189 GAGCCAGTGTAAGACCATGTCTGGGACATAGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCG
8877225 GCACCTTACT
Statistics
Matches: 136, Mismatches: 30, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
45 2 0.01
46 54 0.40
47 63 0.46
48 17 0.12
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGACTATGAGATAT
Found at i:8888457 original size:40 final size:40
Alignment explanation
Indices: 8888413--8888491 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
8888403 ATGGATTTAA
8888413 AGCTCTAATTTTGTTATGTGATGATTTTATCAAGTGATTG
1 AGCTCTAATTTTGTTATGTGATGATTTTATCAAGTGATTG
*
8888453 AGCTCTAATTTTGTTATGTGATGATTTTATGAAGTGATT
1 AGCTCTAATTTTGTTATGTGATGATTTTATCAAGTGATT
8888492 TCAATAGAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.25, C:0.06, G:0.20, T:0.48
Consensus pattern (40 bp):
AGCTCTAATTTTGTTATGTGATGATTTTATCAAGTGATTG
Found at i:8905883 original size:103 final size:103
Alignment explanation
Indices: 8905759--8905963 Score: 376
Period size: 103 Copynumber: 2.0 Consensus size: 103
8905749 GGTCGCACCC
8905759 TTAATGGAAATAATTTATAGAAAATATATAGTGGGTTCGCACACATAGTGCTTAATAATCAACCG
1 TTAATGGAAATAATTTATAGAAAATATATAGTGGGTTCGCACACATAGTGCTTAATAATCAACCG
*
8905824 CGCACACTTAGTGCCATGTACTTT-AAACTCGCACACTT
66 CGCACACTTAGTGCCATGCA-TTTCAAACTCGCACACTT
8905862 TTAATGGAAATAATTTATAGAAAATATATAGTGGGTTCGCACACATAGTGCTTAATAATCAACCG
1 TTAATGGAAATAATTTATAGAAAATATATAGTGGGTTCGCACACATAGTGCTTAATAATCAACCG
*
8905927 CGCACACTTAGTGCCATGCATTTCAAGCTCGCACACT
66 CGCACACTTAGTGCCATGCATTTCAAACTCGCACACT
8905964 CAGTGCCATG
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
102 3 0.03
103 96 0.97
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (103 bp):
TTAATGGAAATAATTTATAGAAAATATATAGTGGGTTCGCACACATAGTGCTTAATAATCAACCG
CGCACACTTAGTGCCATGCATTTCAAACTCGCACACTT
Found at i:8905961 original size:29 final size:29
Alignment explanation
Indices: 8905927--8905999 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
8905917 TAATCAACCG
8905927 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
8905956 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
8905985 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
8906000 GAAAACCAGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.23, C:0.34, G:0.18, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:8907610 original size:26 final size:26
Alignment explanation
Indices: 8907542--8907600 Score: 111
Period size: 26 Copynumber: 2.3 Consensus size: 26
8907532 TTTCTACTAC
8907542 TCACTTTTACATCTTTTGCAACTTGG
1 TCACTTTTACATCTTTTGCAACTTGG
8907568 TCACTTTTACATCTTTTGCAACTTGG
1 TCACTTTTACATCTTTTGCAACTTGG
8907594 TC-CTTTT
1 TCACTTTT
8907601 TAGGTGTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 5 0.15
26 28 0.85
ACGTcount: A:0.17, C:0.24, G:0.10, T:0.49
Consensus pattern (26 bp):
TCACTTTTACATCTTTTGCAACTTGG
Found at i:8912569 original size:24 final size:24
Alignment explanation
Indices: 8912524--8912569 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
8912514 CCTTATTAAC
* *
8912524 ATTTCTTATTTCTCTTTTCTTTTA
1 ATTTCTTATTTCTCCTTCCTTTTA
8912548 ATTTCTT-TTTCTCGCTTCCTTT
1 ATTTCTTATTTCTC-CTTCCTTT
8912570 CATTACAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.09, C:0.22, G:0.02, T:0.67
Consensus pattern (24 bp):
ATTTCTTATTTCTCCTTCCTTTTA
Found at i:8922637 original size:46 final size:48
Alignment explanation
Indices: 8922437--8922709 Score: 296
Period size: 46 Copynumber: 5.8 Consensus size: 48
8922427 AGGGTATAAT
* * **
8922437 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTAT-CAAAATCGAG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTAC-ATCTCGAG
* * * *
8922486 GCCGACGCCATGTCCCAGACATGATCTTACACTAGCTCTCACATATCCAT
1 GCCGATGCCATGTCCCAGACATG-TCTTACACTAGCTCT-ACATCTCGAG
*
8922536 GCCGATGCCATGTCCTAGACATGGTCTTACACTA---C-ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTACATCTCG-AG
*
8922581 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCT-TACATCTTGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAG
* * *
8922627 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAG
*
8922673 GCCGATGCCATGTCCCGGACATGTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTC
8922710 CCAAATAACC
Statistics
Matches: 194, Mismatches: 18, Indels: 26
0.82 0.08 0.11
Matches are distributed among these distances:
43 11 0.06
44 13 0.07
45 14 0.07
46 54 0.28
47 30 0.15
48 1 0.01
49 34 0.18
50 35 0.18
51 2 0.01
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCGAG
Found at i:8922685 original size:93 final size:95
Alignment explanation
Indices: 8922437--8922709 Score: 308
Period size: 93 Copynumber: 2.9 Consensus size: 95
8922427 AGGGTATAAT
* ** * *
8922437 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAGGCCGACGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-ACTCTC-ATCTC-ATGCCGATGCCATGTCCC
*
8922502 AGACATGATCTTACACTAGCTCTCACATATCCAT
63 AGACATG-TCTTACACTAGCTCTCACATATCCAG
* * *
8922536 GCCGATGCCATGTCCTAGACATGGTCTTACACTA--CACATCTCGTAGCCGATG-CATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTACTCTCATCTCAT-GCCGATGCCATGTCCCAG
* **
8922598 ACATGTCTTACACTAGCT-T-ACATCTTGAG
65 ACATGTCTTACACTAGCTCTCACATATCCAG
* *
8922627 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA-CTCTCATCTC-ATGCCGATGCCATGTCCCA
8922690 GACATGTCTTACACTAGCTC
64 GACATGTCTTACACTAGCTC
8922710 CCAAATAACC
Statistics
Matches: 150, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
89 11 0.07
90 13 0.09
91 12 0.08
92 15 0.10
93 41 0.27
94 15 0.10
95 9 0.06
96 1 0.01
98 1 0.01
99 32 0.21
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.26
Consensus pattern (95 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTACTCTCATCTCATGCCGATGCCATGTCCCAGA
CATGTCTTACACTAGCTCTCACATATCCAG
Found at i:8927073 original size:24 final size:22
Alignment explanation
Indices: 8927041--8927086 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
8927031 ATTTTCCCAT
*
8927041 GAAACAGGGTCACACGCCTGTGTG
1 GAAACAGGG--ACACACCTGTGTG
*
8927065 GAAATAGGGACACACCTGTGTG
1 GAAACAGGGACACACCTGTGTG
8927087 CCTTTGGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
24 8 0.40
ACGTcount: A:0.28, C:0.22, G:0.33, T:0.17
Consensus pattern (22 bp):
GAAACAGGGACACACCTGTGTG
Found at i:8928674 original size:28 final size:28
Alignment explanation
Indices: 8928634--8928689 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
8928624 ATCGATTCAA
8928634 GATAAGCTCTTATTCAGAGGAGGAATAG
1 GATAAGCTCTTATTCAGAGGAGGAATAG
8928662 GATAAGCTCTTATTCAGAGGAGGAATAG
1 GATAAGCTCTTATTCAGAGGAGGAATAG
8928690 ACCCTGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.29, T:0.25
Consensus pattern (28 bp):
GATAAGCTCTTATTCAGAGGAGGAATAG
Found at i:8930595 original size:46 final size:48
Alignment explanation
Indices: 8930340--8930652 Score: 206
Period size: 46 Copynumber: 6.6 Consensus size: 48
8930330 GGGTATAATA
** * *
8930340 CCGATGCCATGTCCCAGACATGGTCTTACACAGGC-T-CATCCATC-AAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTGCTTACAT--TTCGAGG
* * * **
8930387 TCAATGCCCATGTCCCAGATATGGTCTTACAC-TGAC-TATCGAAATCGAGG
1 CCGATG-CCATGTCCCAGACATGGTCTTACACTTG-CTTA-C-ATTTCGAGG
* * * * * *
8930437 CGGATGCCATGTCCCAGACCTGGTTTTACACTAGCTCTCACATATCCG-TG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTGCT-T-ACAT-TTCGAGG
*
8930487 CCGATGCCATGTCCCAGACATGGTCTTACAC-TGAC--ACATCTCGTA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTG-CTTACATTTCG-AGG
8930533 CCGATG-CATGTCCCAGACAT-GTCTTACACTTGCTTACATTTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTGCTTACATTTCGAGG
* * * * *
8930579 CTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTGCT-TACATTTCGAGG
* *
8930625 CCGATGCCATGTCCCATATATGGTCTTA
1 CCGATGCCATGTCCCAGACATGGTCTTA
8930653 TACTGGCTCC
Statistics
Matches: 213, Mismatches: 32, Indels: 41
0.74 0.11 0.14
Matches are distributed among these distances:
44 10 0.05
45 19 0.09
46 63 0.30
47 18 0.08
48 32 0.15
49 27 0.13
50 38 0.18
51 5 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTTGCTTACATTTCGAGG
Found at i:8934816 original size:50 final size:51
Alignment explanation
Indices: 8934716--8934817 Score: 134
Period size: 50 Copynumber: 2.0 Consensus size: 51
8934706 AATAACAAAG
* ** *
8934716 TCAGCAAGAAAGAAAAAATTTGTCTACTCGTACCAATATGTCCTCAATTTT
1 TCAGCAAGAAAGAAAAAATTTGTCTACACGTACCAATACATCATCAATTTT
* * *
8934767 TCAGCAGGAAA-AATAAATTTGTCTACACGTACCAATACATCATCGATTTT
1 TCAGCAAGAAAGAAAAAATTTGTCTACACGTACCAATACATCATCAATTTT
8934817 T
1 T
8934818 TCTTCTGGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
50 34 0.77
51 10 0.23
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (51 bp):
TCAGCAAGAAAGAAAAAATTTGTCTACACGTACCAATACATCATCAATTTT
Found at i:8944296 original size:15 final size:15
Alignment explanation
Indices: 8944276--8944305 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8944266 CATTATTATT
8944276 CATACATTCAGATCA
1 CATACATTCAGATCA
8944291 CATACATTCAGATCA
1 CATACATTCAGATCA
8944306 TACATTTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (15 bp):
CATACATTCAGATCA
Found at i:8944309 original size:13 final size:13
Alignment explanation
Indices: 8944275--8944311 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 13
8944265 GCATTATTAT
8944275 TCATACATTCAGA
1 TCATACATTCAGA
8944288 TCACATACATTCAGA
1 T--CATACATTCAGA
8944303 TCATACATT
1 TCATACATT
8944312 TAGCGGTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.41
15 13 0.59
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.32
Consensus pattern (13 bp):
TCATACATTCAGA
Found at i:8946711 original size:46 final size:48
Alignment explanation
Indices: 8946616--8946750 Score: 152
Period size: 46 Copynumber: 2.9 Consensus size: 48
8946606 TGTAACCCGC
* * *
8946616 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG--GCTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCTAGCAT
*
8946662 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCTAGCAT
*** * *
8946708 CCATCTCTCGAACTCGGACTCAACTCAAGGAGTTCGGATGCTC
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGCTC
8946751 AACCATCCTA
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
46 41 0.54
47 32 0.42
48 3 0.04
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCTAGCAT
Found at i:8955746 original size:15 final size:16
Alignment explanation
Indices: 8955713--8955746 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8955703 ATCAGGATAT
*
8955713 TACATGTATGTCATCA
1 TACATGTATCTCATCA
8955729 TACATGTATCTC-TCA
1 TACATGTATCTCATCA
8955744 TAC
1 TAC
8955747 TCATTTTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (16 bp):
TACATGTATCTCATCA
Found at i:8960111 original size:28 final size:28
Alignment explanation
Indices: 8960067--8960123 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
8960057 ACCTCGAGAG
*
8960067 TAAGCTCTTTTTTCCCTTTGGTACATTA
1 TAAGCTCTTTTTGCCCTTTGGTACATTA
8960095 TAAGCTCTTTTTGCCCTTTGGTACATTA
1 TAAGCTCTTTTTGCCCTTTGGTACATTA
8960123 T
1 T
8960124 TGTCATACAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.21, G:0.12, T:0.49
Consensus pattern (28 bp):
TAAGCTCTTTTTGCCCTTTGGTACATTA
Found at i:8964357 original size:40 final size:40
Alignment explanation
Indices: 8964261--8964404 Score: 157
Period size: 40 Copynumber: 3.5 Consensus size: 40
8964251 TATTCGGATG
* *
8964261 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TT-TATG-CTAGTTGCT
* * *
8964304 ATACCCAGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTG-CT
* * *
8964344 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGCT
*
8964384 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
8964405 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
39 15 0.17
40 42 0.49
41 4 0.05
42 2 0.02
43 23 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTGCT
Found at i:8972997 original size:16 final size:16
Alignment explanation
Indices: 8972976--8973028 Score: 70
Period size: 16 Copynumber: 3.1 Consensus size: 16
8972966 CACACACGCC
8972976 CGTGTGGCTTGGGACA
1 CGTGTGGCTTGGGACA
8972992 CGTGTGGCTTGGGACA
1 CGTGTGGCTTGGGACA
8973008 CGCCCGTGTGGCTTGGGACA
1 ----CGTGTGGCTTGGGACA
8973028 C
1 C
8973029 TCCCGTGTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
16 17 0.52
20 16 0.48
ACGTcount: A:0.11, C:0.25, G:0.42, T:0.23
Consensus pattern (16 bp):
CGTGTGGCTTGGGACA
Found at i:8973017 original size:20 final size:20
Alignment explanation
Indices: 8972969--8973036 Score: 99
Period size: 20 Copynumber: 3.6 Consensus size: 20
8972959 GTGTGGTCAC
8972969 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
8972989 ACA----CGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
8973005 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
*
8973025 ACACTCCCGTGT
1 ACACGCCCGTGT
8973037 CCTCAGCCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
16 16 0.37
20 27 0.63
ACGTcount: A:0.12, C:0.29, G:0.37, T:0.22
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:8975400 original size:40 final size:40
Alignment explanation
Indices: 8975370--8975539 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
8975360 GGACTAAGAT
* *
8975370 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
8975410 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
8975450 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
8975490 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
8975529 CCGAAGGCATT
1 CCGAAGGCATT
8975540 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 33 0.28
40 83 0.72
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:8975466 original size:80 final size:79
Alignment explanation
Indices: 8975317--8975539 Score: 241
Period size: 80 Copynumber: 2.8 Consensus size: 79
8975307 TTGAATGCTG
* * * * * * * * *
8975317 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
8975381 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* * *
8975397 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
8975462 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
8975477 TCCGGGTTACGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
8975540 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 82 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:8975559 original size:79 final size:80
Alignment explanation
Indices: 8975392--8975574 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
8975382 GTGCGAGATA
* * *
8975392 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
8975457 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
8975472 TTAAATCCGGGTTACGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
8975536 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
8975551 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
8975575 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:8983350 original size:40 final size:40
Alignment explanation
Indices: 8983230--8983452 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
8983220 TTGAATGCTG
* * * * * *
8983230 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
8983270 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
8983310 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
8983350 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
8983390 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
8983429 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
8983453 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 117 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:8983472 original size:79 final size:80
Alignment explanation
Indices: 8983305--8983487 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
8983295 GTGCGAGATA
** *
8983305 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
8983370 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * * *
8983385 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
* *
8983449 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
8983464 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
8983488 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:8985525 original size:27 final size:27
Alignment explanation
Indices: 8985495--8985672 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
8985485 ATATTGAGTC
* * * *
8985495 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
8985522 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
8985549 CACACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
8985577 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
8985604 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
8985631 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
8985658 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
8985673 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:8985637 original size:82 final size:81
Alignment explanation
Indices: 8985516--8985671 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
8985506 TGCTATATAA
* *
8985516 TCAACTCGCACACTTAGTGCTACGTAATCAAATCACACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCACACACTTAGTGCAACATAGTCAAA-TCGCA
8985581 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
8985598 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCACACACTTAGTGCAACATAGTCAAATCGCA
8985662 CACTTAGTGC
65 CACTTAGTGC
8985672 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCACACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:8989740 original size:47 final size:47
Alignment explanation
Indices: 8989622--8990451 Score: 1569
Period size: 47 Copynumber: 17.7 Consensus size: 47
8989612 GGATGGTTGA
* * * *
8989622 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG
8989670 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8989715 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8989762 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8989809 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8989856 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8989903 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8989950 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8989997 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990044 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990091 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990138 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990185 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990232 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990279 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990326 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990373 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
8990420 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
8990452 ACTTATGGAT
Statistics
Matches: 774, Mismatches: 4, Indels: 9
0.98 0.01 0.01
Matches are distributed among these distances:
43 6 0.01
45 4 0.01
46 29 0.04
47 734 0.95
48 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:8994475 original size:46 final size:46
Alignment explanation
Indices: 8994374--8994462 Score: 142
Period size: 46 Copynumber: 1.9 Consensus size: 46
8994364 TGTAACCCGC
* * *
8994374 CCATAAGTGAAATCGGACTCAACTCAATGAGCTCGGGCGTTCGTAT
1 CCATGAGTGAAATCGGACTCAACTCAACGAGCTCGAGCGTTCGTAT
*
8994420 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCG
1 CCATGAGTGAAATCGGACTCAACTCAACGAGCTCGAGCGTTCG
8994463 ACCATCCTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (46 bp):
CCATGAGTGAAATCGGACTCAACTCAACGAGCTCGAGCGTTCGTAT
Found at i:8998636 original size:15 final size:15
Alignment explanation
Indices: 8998620--8998675 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
8998610 GTATCTTGGG
*
8998620 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
8998635 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
8998650 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
8998665 TTTCTTTATTC
1 TTTCTTTATTC
8998676 GGTTTCCTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
14 2 0.06
15 32 0.89
16 2 0.06
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:9000661 original size:46 final size:46
Alignment explanation
Indices: 9000611--9000783 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
9000601 TTGGGCATCC
9000611 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG-TCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-GCTCT
*** * * * *
9000657 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAAGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCAAAGC-TCT
* * * * *
9000704 AAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGCCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-CAAAGCTCT
* * *
9000751 -AGCTCATTGAGTTGAGTTCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9000784 GCGGGTTACA
Statistics
Matches: 99, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 1 0.01
46 63 0.64
47 32 0.32
48 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGCTCT
Found at i:9000764 original size:93 final size:93
Alignment explanation
Indices: 9000605--9000775 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
9000595 GATGTTTTGG
* * * *
9000605 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
9000670 TGAGTCCGAGTTCGAGAGATGTAACTAA
66 TGAGTCCGAGTTCGAGAGATGTAACTAA
* ** *
9000698 GCATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGCCCT-AGCTCATTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG-CCTGAACTCATTGAG
*
9000762 TTGAGTTCGAGTTC
65 TTGAGTCCGAGTTC
9000776 ACTTATGGGC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
93 66 0.97
94 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAA
Found at i:9003177 original size:33 final size:33
Alignment explanation
Indices: 9003094--9003166 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
9003084 TACTACTGTG
*
9003094 TAGGGCTAAGGCCCAGACTGCACTGATACTATA
1 TAGGGCTAAGGCCCAGACTGCACTAATACTATA
*
9003127 TAGGGCTAAGGCCCAGACTGTACTAATACTGA-A
1 TAGGGCTAAGGCCCAGACTGCACTAATACT-ATA
9003160 TAGGGCT
1 TAGGGCT
9003167 CTAGCCCAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 36 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (33 bp):
TAGGGCTAAGGCCCAGACTGCACTAATACTATA
Found at i:9007172 original size:40 final size:40
Alignment explanation
Indices: 9007117--9007217 Score: 166
Period size: 40 Copynumber: 2.5 Consensus size: 40
9007107 TATGTGCATA
* *
9007117 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGCAG
1 GCATTCGTGCGGGTTATTATAACCAGGTTAAGTCCCGAAG
9007157 GCATTCGTGCGGGTTATTATAACCAGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCAGGTTAAGTCCCGAAG
* *
9007197 GCATTCGTGCTGGTTGTTATA
1 GCATTCGTGCGGGTTATTATA
9007218 TCCGAGCCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCAGGTTAAGTCCCGAAG
Found at i:9011627 original size:47 final size:47
Alignment explanation
Indices: 9011571--9011849 Score: 256
Period size: 47 Copynumber: 6.0 Consensus size: 47
9011561 TGGGTAAGCT
*
9011571 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA
* * *
9011618 GTCGATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-AA
* * * *
9011666 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTAT-GTCTCGAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-AA
* *
9011712 GCCGATGCATGTCCCAGACA-AGTCTTACACTAGCTC-TCGTCTCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA
* * * * * *
9011757 TGTCGATACCATGTCCCAGACATGGTCTTACACTGGTCCTCATAATGT--G
1 -GCCGAT-GCATGTCCCAGACATGGTCTTACACTAG--CTCATCATCTCAA
*
9011806 GCTGATGCATGTCCCAGACAT-GTCTTACACTAGCTCA-CA-CTCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA
9011850 ATGACCCGAA
Statistics
Matches: 191, Mismatches: 28, Indels: 29
0.77 0.11 0.12
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 4 0.02
45 2 0.01
46 73 0.38
47 82 0.43
48 22 0.12
50 3 0.02
51 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA
Found at i:9011831 original size:140 final size:141
Alignment explanation
Indices: 9011571--9011836 Score: 371
Period size: 140 Copynumber: 1.9 Consensus size: 141
9011561 TGGGTAAGCT
* * *
9011571 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGTCGATACCATGTCCCAG
*
9011636 ACATGGTCTTACACTAACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
66 ACATGGTCTTACACTAACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
9011701 TATGTCTCGAG
131 TATGTCTCGAG
*
9011712 GCCGATG-CATGTCCCAGACA-AGTCTTACACTAGCTC-TCGTCTCAATGTCGATACCATGTCCC
1 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCAT-ATCTCAA-GTCGATACCATGTCCC
** * * *
9011774 AGACATGGTCTTACACT-GGTCCTCATAAT-GTGGCTGATGCATGTCCCAGACATGTCTTACACT
64 AGACATGGTCTTACACTAACT-ATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACACT
9011837 AGCTCACACT
Statistics
Matches: 111, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 21 0.19
140 81 0.73
141 8 0.07
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGTCGATACCATGTCCCAG
ACATGGTCTTACACTAACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
TATGTCTCGAG
Found at i:9018837 original size:24 final size:24
Alignment explanation
Indices: 9018779--9018990 Score: 263
Period size: 24 Copynumber: 9.0 Consensus size: 24
9018769 GCTTTATCAT
*
9018779 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
9018804 ATAACT-GGGCAAAAACCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
9018827 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* * *
9018850 ATAACTGGGACGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
9018874 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
9018898 ATAATTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
9018921 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
9018945 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
9018968 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
9018991 TCACTTCCTG
Statistics
Matches: 164, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
23 76 0.46
24 82 0.50
25 6 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:9018886 original size:47 final size:47
Alignment explanation
Indices: 9018779--9018990 Score: 259
Period size: 47 Copynumber: 4.5 Consensus size: 47
9018769 GCTTTATCAT
* * * *
9018779 ATAACTGGAGGCCT-AGCCTCTTTTAATAACT-GGGCAAAAACCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTA
* * * *
9018827 ATAACTAGGGCATAAGCCC-TTTAATAACTGGGACGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTA
* * *
9018874 ATAATTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
*
9018921 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
9018968 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
9018991 TCACTTCCTG
Statistics
Matches: 145, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
46 10 0.07
47 105 0.72
48 30 0.21
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:9019065 original size:20 final size:20
Alignment explanation
Indices: 9019040--9019106 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
9019030 TTATGAATAC
9019040 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
9019060 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
9019080 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
9019100 ACCATGT
1 ATCATGT
9019107 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:9019071 original size:11 final size:11
Alignment explanation
Indices: 9019040--9019095 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
9019030 TTATGAATAC
9019040 ATCATGTGCAT
1 ATCATGTGCAT
*
9019051 ATCA--TACAT
1 ATCATGTGCAT
9019060 ATCATGTGCAT
1 ATCATGTGCAT
*
9019071 ATCA--TACAT
1 ATCATGTGCAT
*
9019080 GTCATGTGCAT
1 ATCATGTGCAT
9019091 ATCAT
1 ATCAT
9019096 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:9019175 original size:25 final size:25
Alignment explanation
Indices: 9019143--9019190 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
9019133 ATACATAAAC
* * *
9019143 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
9019168 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
9019191 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:9027906 original size:27 final size:28
Alignment explanation
Indices: 9027822--9027919 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
9027812 CATGAGATTG
* * * *
9027822 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
9027851 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
9027879 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
9027906 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
9027920 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:9027930 original size:27 final size:27
Alignment explanation
Indices: 9027850--9027932 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
9027840 TAAATTGTAC
* *
9027850 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
9027878 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
9027905 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
9027932 A
1 A
9027933 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:9027933 original size:29 final size:27
Alignment explanation
Indices: 9027822--9027933 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
9027812 CATGAGATTG
** * *
9027822 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
9027851 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
9027879 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
9027906 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
9027934 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:9029943 original size:20 final size:22
Alignment explanation
Indices: 9029915--9029954 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
9029905 CCCAAATCAC
9029915 TCCAACAC-ATCCCC-CAACCG
1 TCCAACACAATCCCCTCAACCG
*
9029935 TCCACCACAATCCCCTCAAC
1 TCCAACACAATCCCCTCAAC
9029955 AACTAAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 6 0.35
22 4 0.24
ACGTcount: A:0.30, C:0.55, G:0.03, T:0.12
Consensus pattern (22 bp):
TCCAACACAATCCCCTCAACCG
Found at i:9043437 original size:8 final size:8
Alignment explanation
Indices: 9043423--9043453 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
9043413 ATTTAAGTAA
9043423 ATATTATT
1 ATATTATT
*
9043431 TTATTATT
1 ATATTATT
9043439 ATATTATT
1 ATATTATT
9043447 ATATTAT
1 ATATTAT
9043454 ATTAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
ATATTATT
Found at i:9046387 original size:6 final size:6
Alignment explanation
Indices: 9046357--9046487 Score: 90
Period size: 6 Copynumber: 21.3 Consensus size: 6
9046347 AAGAAACATT
* *
9046357 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * * *
9046404 GTGACAGA ATCAAA ATCAAA ACCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
*
9046455 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
9046488 GTGAAAGCAA
Statistics
Matches: 98, Mismatches: 16, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
5 5 0.05
6 81 0.83
7 9 0.09
8 3 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:9046413 original size:19 final size:19
Alignment explanation
Indices: 9046389--9046459 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
9046379 GAATCAGAAT
9046389 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
* **
9046408 CAGAATCAAAATCA--AAA
1 CAGAATCAGAATCAGGTGA
*
9046425 CCAGAATCAGAATTAGGTGA
1 -CAGAATCAGAATCAGGTGA
9046445 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
9046460 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 1 0.02
18 12 0.29
19 27 0.66
20 1 0.02
ACGTcount: A:0.48, C:0.17, G:0.20, T:0.15
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:9046421 original size:31 final size:31
Alignment explanation
Indices: 9046378--9046487 Score: 109
Period size: 31 Copynumber: 3.5 Consensus size: 31
9046368 AATCAAAATG
*
9046378 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * * *
9046409 AGAATCAAAATCAAAACCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
* *
9046439 AG-GTGACAGAATCAGAATCAGTATCAGGTAAC
1 AGAAT--CAGAATCAGAATCAGAATCAGGTAAC
9046471 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
9046488 GTGAAAGCAA
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 50 0.82
32 3 0.05
33 3 0.05
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.17
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:9046430 original size:37 final size:37
Alignment explanation
Indices: 9046380--9046458 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
9046370 TCAAAATGAG
* *
9046380 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAAAACCAGAATCAGAATCAGGTGACAGAATCAA
* *
9046417 AATCAAAACCAGAATCAGAATTAGGTGACAGAATCAG
1 AATCAAAACCAGAATCAGAATCAGGTGACAGAATCAA
9046454 AATCA
1 AATCA
9046459 GTATCAGGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.16
Consensus pattern (37 bp):
AATCAAAACCAGAATCAGAATCAGGTGACAGAATCAA
Found at i:9046456 original size:25 final size:25
Alignment explanation
Indices: 9046426--9046487 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
9046416 AAATCAAAAC
* *
9046426 CAGAATCAGAATTAGGTGACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
*
9046451 CAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAGAAT
9046476 CAGAATCAGAAT
1 CAGAATCAGAAT
9046488 GTGAAAGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAGAAT
Found at i:9046667 original size:27 final size:26
Alignment explanation
Indices: 9046619--9046678 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
9046609 GCGAGGCTGC
*
9046619 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
9046646 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
9046672 CAGATAT
1 CAGATAT
9046679 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:9047033 original size:26 final size:27
Alignment explanation
Indices: 9047004--9047061 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
9046994 AACACCCTAG
* *
9047004 GGGTAAAATGGT-ATTTTACCCTACAA
1 GGGTAAAATGGTAATTCTAACCTACAA
***
9047030 GGGTATCTTGGTAATTCTAACCTACAA
1 GGGTAAAATGGTAATTCTAACCTACAA
9047057 GGGTA
1 GGGTA
9047062 TTTCAGTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 9 0.35
27 17 0.65
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (27 bp):
GGGTAAAATGGTAATTCTAACCTACAA
Found at i:9047053 original size:27 final size:27
Alignment explanation
Indices: 9047020--9047207 Score: 252
Period size: 27 Copynumber: 7.0 Consensus size: 27
9047010 AATGGTATTT
9047020 TACCCTACAAGGGTATCTT-GGTAATTC
1 TACCCTACAAGGGTAT-TTCGGTAATTC
* *
9047047 TAACCTACAAGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* * *
9047074 TACCCTACAGGGGTATTTCAGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
9047101 TACCCTACAAGGGTATTTCGATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* * * *
9047128 TACCCTAGAGGGGTATTTCGCTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
9047155 TACCCTACAAGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
9047182 TACCCTACAAAGGTATTTCGGTAATT
1 TACCCTACAAGGGTATTTCGGTAATT
9047208 TTACAAATCG
Statistics
Matches: 140, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
26 2 0.01
27 138 0.99
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATTC
Found at i:9047088 original size:54 final size:54
Alignment explanation
Indices: 9047020--9047234 Score: 256
Period size: 54 Copynumber: 4.0 Consensus size: 54
9047010 AATGGTATTT
9047020 TACCCTACAAGGGTATCTT-GGTAATTCTAACCTACAAGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTAT-TTCGGTAATTCTAACCTACAAGGGTATTTCAGTAATTC
* * * *
9047074 TACCCTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTC-GATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTCTAACCTACAAGGGTATTTCAG-TAATTC
* * * * *
9047128 TACCCTAGAGGGGTATTTCGCTATTTCTACCCTACAAGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTCTAACCTACAAGGGTATTTCAGTAATTC
* * ** *
9047182 TACCCTACAAAGGTATTTCGGTAATT-TTACAAATCGAGGGTATTTCAGTAATT
1 TACCCTACAAGGGTATTTCGGTAATTCTAACCTA-CAAGGGTATTTCAGTAATT
9047235 TCACAATCGA
Statistics
Matches: 140, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
53 6 0.04
54 133 0.95
55 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (54 bp):
TACCCTACAAGGGTATTTCGGTAATTCTAACCTACAAGGGTATTTCAGTAATTC
Found at i:9047126 original size:81 final size:81
Alignment explanation
Indices: 9047014--9047234 Score: 279
Period size: 81 Copynumber: 2.7 Consensus size: 81
9047004 GGGTAAAATG
9047014 GTATTT-TACCCTACAAGGGTATCTT-GGTAATTCTAACCTACAAGGGTATTTCAGTAATTCTAC
1 GTATTTCTACCCTACAAGGGTAT-TTCGGTAATTCTAACCTACAAGGGTATTTCAGTAATTCTAC
*
9047077 CCTACAGGGGTATTTCA
65 CCTACAAGGGTATTTCA
* * * * *
9047094 GTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTAGAGGGGTATTTC-GCTATTTCTAC
1 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAACCTACAAGGGTATTTCAG-TAATTCTAC
9047158 CCTACAAGGGTATTTCA
65 CCTACAAGGGTATTTCA
* * * ** *
9047175 GTAATTCTACCCTACAAAGGTATTTCGGTAATT-TTACAAATCGAGGGTATTTCAGTAATT
1 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAACCTA-CAAGGGTATTTCAGTAATT
9047235 TCACAATCGA
Statistics
Matches: 119, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
80 12 0.10
81 106 0.89
82 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (81 bp):
GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTAACCTACAAGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCA
Found at i:9047223 original size:27 final size:27
Alignment explanation
Indices: 9047193--9047293 Score: 109
Period size: 27 Copynumber: 3.8 Consensus size: 27
9047183 ACCCTACAAA
9047193 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
9047220 GGTATTTCAGTAATTTCAC-AATCGAT
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
9047246 GGTATTTTGGTAATTTTATAAA-CCAGG
1 GGTATTTCGGTAATTTTACAAATCGA-G
9047273 GGTACTTT-GGTAATTTTACAA
1 GGTA-TTTCGGTAATTTTACAA
9047294 CTGGGGGTAT
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
26 23 0.38
27 35 0.57
28 3 0.05
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:9047249 original size:26 final size:27
Alignment explanation
Indices: 9047193--9047261 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
9047183 ACCCTACAAA
*
9047193 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTCACAAATCGAG
* *
9047220 GGTATTTCAGTAATTTCAC-AATCGAT
1 GGTATTTCGGTAATTTCACAAATCGAG
*
9047246 GGTATTTTGGTAATTT
1 GGTATTTCGGTAATTT
9047262 TATAAACCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 20 0.54
27 17 0.46
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (27 bp):
GGTATTTCGGTAATTTCACAAATCGAG
Found at i:9047276 original size:53 final size:53
Alignment explanation
Indices: 9047193--9047293 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
9047183 ACCCTACAAA
*
9047193 GGTATTTCGGTAATTTTACAAATCGAGGGTA-TTTCAGTAATTTCACAATCGAT
1 GGTATTTCGGTAATTTTACAAACCGAGGGTACTTT-AGTAATTTCACAATCGAT
* * * *
9047246 GGTATTTTGGTAATTTTATAAACC-AGGGGTACTTTGGTAATTTTACAA
1 GGTATTTCGGTAATTTTACAAACCGA-GGGTACTTTAGTAATTTCACAA
9047294 CTGGGGGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
52 1 0.02
53 37 0.90
54 3 0.07
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAACCGAGGGTACTTTAGTAATTTCACAATCGAT
Found at i:9047311 original size:26 final size:27
Alignment explanation
Indices: 9047193--9047314 Score: 108
Period size: 27 Copynumber: 4.6 Consensus size: 27
9047183 ACCCTACAAA
* *
9047193 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTTGGTAATTTTACAACTCGAG
** * *
9047220 GGTATTTCAGTAATTTCACAA-TCGAT
1 GGTATTTTGGTAATTTTACAACTCGAG
*
9047246 GGTATTTTGGTAATTTTATAAAC-C-AGG
1 GGTATTTTGGTAATTTTA-CAACTCGA-G
* *
9047273 GGTACTTTGGTAATTTTACAACT-GGG
1 GGTATTTTGGTAATTTTACAACTCGAG
*
9047299 GGTATTTTAGTAATTT
1 GGTATTTTGGTAATTT
9047315 GGTAAACTAA
Statistics
Matches: 77, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
26 38 0.49
27 39 0.51
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAACTCGAG
Found at i:9049942 original size:46 final size:48
Alignment explanation
Indices: 9049870--9049972 Score: 138
Period size: 46 Copynumber: 2.2 Consensus size: 48
9049860 GACAGGACAG
* * * *
9049870 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTAGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTAGA
* *
9049916 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTAGA
9049964 GACAGGAAT
1 GACAGGAAT
9049973 AATTCATGTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
46 27 0.55
47 1 0.02
48 21 0.43
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTAGA
Found at i:9053540 original size:19 final size:19
Alignment explanation
Indices: 9053516--9053561 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
9053506 TGTTCTGGCA
*
9053516 GCCTCGCTGCAATCTAGTG
1 GCCTCGCCGCAATCTAGTG
9053535 GCCTCGCCGCAATCTAGTG
1 GCCTCGCCGCAATCTAGTG
9053554 GCCTCGCC
1 GCCTCGCC
9053562 ACATATATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.39, G:0.26, T:0.22
Consensus pattern (19 bp):
GCCTCGCCGCAATCTAGTG
Found at i:9055283 original size:17 final size:18
Alignment explanation
Indices: 9055261--9055294 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
9055251 TTAAGCATAC
9055261 AGAAAGAT-AGAATCGTG
1 AGAAAGATCAGAATCGTG
9055278 AGAAAGATCAGAATCGT
1 AGAAAGATCAGAATCGT
9055295 TTTAGGAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.47, C:0.09, G:0.26, T:0.18
Consensus pattern (18 bp):
AGAAAGATCAGAATCGTG
Found at i:9060933 original size:295 final size:295
Alignment explanation
Indices: 9060403--9060992 Score: 1180
Period size: 295 Copynumber: 2.0 Consensus size: 295
9060393 TGGCTAATCA
9060403 TTACCAAACATTTCCACACCACTTAATAACTATATCATAAGACCATATATACAAAATGATCATAA
1 TTACCAAACATTTCCACACCACTTAATAACTATATCATAAGACCATATATACAAAATGATCATAA
9060468 TGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAATATACATTACCAAAAGATAC
66 TGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAATATACATTACCAAAAGATAC
9060533 TTAATTAACAACAAGGGTCAGCCTTATACATGCCATTATCAAGTTCAACTGAAGAGTACCAAAAA
131 TTAATTAACAACAAGGGTCAGCCTTATACATGCCATTATCAAGTTCAACTGAAGAGTACCAAAAA
9060598 GTGGCTTAGATAGTGTGGATGACTTCGACTTTGACACCTCCGAGTCCGATAGCTGACGAACAAAA
196 GTGGCTTAGATAGTGTGGATGACTTCGACTTTGACACCTCCGAGTCCGATAGCTGACGAACAAAA
9060663 TCTATAATACAGAGAATTTAAGCAACAGAGTAAGC
261 TCTATAATACAGAGAATTTAAGCAACAGAGTAAGC
9060698 TTACCAAACATTTCCACACCACTTAATAACTATATCATAAGACCATATATACAAAATGATCATAA
1 TTACCAAACATTTCCACACCACTTAATAACTATATCATAAGACCATATATACAAAATGATCATAA
9060763 TGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAATATACATTACCAAAAGATAC
66 TGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAATATACATTACCAAAAGATAC
9060828 TTAATTAACAACAAGGGTCAGCCTTATACATGCCATTATCAAGTTCAACTGAAGAGTACCAAAAA
131 TTAATTAACAACAAGGGTCAGCCTTATACATGCCATTATCAAGTTCAACTGAAGAGTACCAAAAA
9060893 GTGGCTTAGATAGTGTGGATGACTTCGACTTTGACACCTCCGAGTCCGATAGCTGACGAACAAAA
196 GTGGCTTAGATAGTGTGGATGACTTCGACTTTGACACCTCCGAGTCCGATAGCTGACGAACAAAA
9060958 TCTATAATACAGAGAATTTAAGCAACAGAGTAAGC
261 TCTATAATACAGAGAATTTAAGCAACAGAGTAAGC
9060993 GTTTCGATGC
Statistics
Matches: 295, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
295 295 1.00
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (295 bp):
TTACCAAACATTTCCACACCACTTAATAACTATATCATAAGACCATATATACAAAATGATCATAA
TGTTATACTCAAAATATACAAGCCATTTTCGCATGGCTATACGAATATACATTACCAAAAGATAC
TTAATTAACAACAAGGGTCAGCCTTATACATGCCATTATCAAGTTCAACTGAAGAGTACCAAAAA
GTGGCTTAGATAGTGTGGATGACTTCGACTTTGACACCTCCGAGTCCGATAGCTGACGAACAAAA
TCTATAATACAGAGAATTTAAGCAACAGAGTAAGC
Found at i:9061454 original size:40 final size:40
Alignment explanation
Indices: 9061400--9061837 Score: 723
Period size: 40 Copynumber: 10.9 Consensus size: 40
9061390 CGGATGTAAC
* *
9061400 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
9061440 AACCTGCACGAATGCCTTCGAGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
9061480 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
9061520 AACCTGCACGAATGCCTTCGAGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
9061560 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
9061600 AACCTGCACGAATGCCTTCGAGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
9061640 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
9061680 AACCTGCACGAATGCCTTCGAGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
9061720 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
9061760 AACCTGCACGAATGCCTTCGAGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
9061800 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
9061838 TATTTTTTTT
Statistics
Matches: 368, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 368 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:9061507 original size:80 final size:80
Alignment explanation
Indices: 9061400--9061837 Score: 858
Period size: 80 Copynumber: 5.5 Consensus size: 80
9061390 CGGATGTAAC
* *
9061400 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
9061465 TAACCCGGTTATAGT
66 TAACCCGGTTATAGT
9061480 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
9061545 TAACCCGGTTATAGT
66 TAACCCGGTTATAGT
9061560 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
9061625 TAACCCGGTTATAGT
66 TAACCCGGTTATAGT
9061640 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
9061705 TAACCCGGTTATAGT
66 TAACCCGGTTATAGT
9061720 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
9061785 TAACCCGGTTATAGT
66 TAACCCGGTTATAGT
9061800 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
9061838 TATTTTTTTT
Statistics
Matches: 356, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 356 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCTGCACGAATGCCTTCGAGACT
TAACCCGGTTATAGT
Found at i:9069914 original size:40 final size:40
Alignment explanation
Indices: 9069859--9070115 Score: 469
Period size: 40 Copynumber: 6.4 Consensus size: 40
9069849 ATGACTTCAA
9069859 GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGG
1 GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGG
*
9069899 GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTTGG
1 GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGG
*
9069939 GACTTAACCTGGTTATAATAACCCGCACGAATGCCTTCGG
1 GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGG
*
9069979 GACTTAACTCGGTTATAATAACCCGCACGAATGCCTTCGG
1 GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGG
*
9070019 GACTTAACTCGGTTATAATAACCCGCACGAATGCCTTCGG
1 GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGG
*
9070059 GACTTAACTCGGTTATAATAACCCGCACGAATGCCTTCGG
1 GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGG
9070099 GACTTAACCCGGTTATA
1 GACTTAACCCGGTTATA
9070116 TTTTTTTTTC
Statistics
Matches: 211, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 211 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
GACTTAACCCGGTTATAATAACCCGCACGAATGCCTTCGG
Found at i:9073758 original size:42 final size:42
Alignment explanation
Indices: 9073699--9073782 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
9073689 TATTAATGTC
* *
9073699 AGTGCAATAACTAGATAGAAATGAGATAAATTGTGAGGATAG
1 AGTGCAATAACTAGATAGAAATGAGACAAATTCTGAGGATAG
9073741 AGTGCAATAACTAGATAGAAATGAGACAAATTCTGAGGATAG
1 AGTGCAATAACTAGATAGAAATGAGACAAATTCTGAGGATAG
9073783 TTGTCGAAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.45, C:0.07, G:0.25, T:0.23
Consensus pattern (42 bp):
AGTGCAATAACTAGATAGAAATGAGACAAATTCTGAGGATAG
Found at i:9075804 original size:39 final size:39
Alignment explanation
Indices: 9075747--9075965 Score: 312
Period size: 39 Copynumber: 5.6 Consensus size: 39
9075737 AACACAAATG
*
9075747 CCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACTAGCACGAATA
*
9075786 CCTTCGGGACTTATCCCGGATATAACACTAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACTAGCACGAATA
*
9075825 TCTTCGGGACTTAGCCCGGATATAACACTAGCACGAATA
1 CCTTCGGGACTTAGCCCGGATATAACACTAGCACGAATA
* * * * *
9075864 CCTTCGGGACTTGGCCCGAACATAACACCAGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAACACTAGCACGAATA
* * *
9075903 CCTTCGGGACTTAACCCGGACATAACACTAGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAACACTAGCACGAATA
* **
9075942 CCTTTGAAACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATA
9075966 GATCTCACAC
Statistics
Matches: 161, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 161 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAACACTAGCACGAATA
Found at i:9083681 original size:39 final size:39
Alignment explanation
Indices: 9083618--9084494 Score: 1655
Period size: 39 Copynumber: 22.5 Consensus size: 39
9083608 TTCCAACATA
* * * *
9083618 AATGCCTTCGGAACTTAGCCCGGATATAACTCCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
* * * * * *
9083657 AATACCTTCGGGACTTAGCTCGGATACAACACTAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9083696 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9083735 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9083774 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9083813 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9083852 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9083891 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9083930 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9083969 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084008 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084047 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084086 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084125 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084164 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084203 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084242 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084281 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084320 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084359 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084398 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
*
9084437 AATGCCTTCGGGACTTAGCCCGGACATAACACCAGCACG
1 AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
9084476 AATGCCTTCGGGACTTAGC
1 AATGCCTTCGGGACTTAGC
9084495 TCGGATATAA
Statistics
Matches: 825, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 825 1.00
ACGTcount: A:0.30, C:0.33, G:0.21, T:0.16
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCAGACATAACACCAGCACG
Found at i:9087571 original size:68 final size:65
Alignment explanation
Indices: 9087499--9087684 Score: 175
Period size: 68 Copynumber: 2.8 Consensus size: 65
9087489 ATACTATGTA
*
9087499 GTAGCTAGGTCACATGTGTGATACGGGATGTATC-CCATGTAGACAAGAGAGCTACGGGAGAGAT
1 GTAGCTAGGTCACATGTGTGATACGAGATGTATCACCATGTAGACAAGAGAGCTAC----GAGAT
9087563 AAAT
62 AAAT
* * * * *
9087567 GTAGCTAGGTCGCATGTGTGATCCCA-AGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 GTAGCTAGGTCACATGTGTGATACGAGA-TGTA--TCACCATGTAGACAAGAGAGCTACGAGATA
9087631 AAT
63 AAT
* * * *
9087634 -TGGCTAGGTCACATGGGTGGTACTAGATGT-TCACCATGT-GCACAAGAGAGC
1 GTAGCTAGGTCACATGTGTGATACGAGATGTATCACCATGTAG-ACAAGAGAGC
9087685 CGAATTATAT
Statistics
Matches: 98, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
66 21 0.21
67 11 0.11
68 25 0.26
70 1 0.01
71 21 0.21
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (65 bp):
GTAGCTAGGTCACATGTGTGATACGAGATGTATCACCATGTAGACAAGAGAGCTACGAGATAAAT
Found at i:9090058 original size:11 final size:11
Alignment explanation
Indices: 9090044--9090073 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
9090034 AATGTAATGA
9090044 CAATGAAATTG
1 CAATGAAATTG
9090055 CAATGAAATTG
1 CAATGAAATTG
9090066 CAATGAAA
1 CAATGAAA
9090074 ATGTGTACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (11 bp):
CAATGAAATTG
Found at i:9097755 original size:30 final size:30
Alignment explanation
Indices: 9097719--9097779 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
9097709 AGTGTTTATT
*
9097719 AATTGATGTTTTGTATATTATTAATTTTTC
1 AATTGATGTTTTGTATATTATGAATTTTTC
9097749 AATTGATGTTTTGTATATTATGAATTTTTC
1 AATTGATGTTTTGTATATTATGAATTTTTC
9097779 A
1 A
9097780 GTATTGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.57
Consensus pattern (30 bp):
AATTGATGTTTTGTATATTATGAATTTTTC
Found at i:9104627 original size:17 final size:18
Alignment explanation
Indices: 9104594--9104628 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
9104584 CATTCTGACC
9104594 ATATCTCACAAAATTTACT
1 ATATCTCAC-AAATTTACT
9104613 ATATCTCAC-AATTTAC
1 ATATCTCACAAATTTAC
9104629 AATTTCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
19 9 0.56
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATCTCACAAATTTACT
Found at i:9105597 original size:29 final size:30
Alignment explanation
Indices: 9105540--9105607 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
9105530 CACCCTTAAA
* * * *
9105540 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTC
*
9105570 ATATTTACACT-TTAATCCCTCAAATTTTG
1 ATATTTACACTATTAATCCCTCAAATTTTC
9105599 AGTATTTAC
1 A-TATTTAC
9105608 TCTTGGCCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.46
Consensus pattern (30 bp):
ATATTTACACTATTAATCCCTCAAATTTTC
Found at i:9115751 original size:29 final size:29
Alignment explanation
Indices: 9115688--9115755 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
9115678 TAATCAACCG
*
9115688 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
9115717 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
9115746 CGCACACTTA
1 CGCACACTTA
9115756 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:9115867 original size:174 final size:174
Alignment explanation
Indices: 9115577--9115904 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
9115567 AACTCAAGGT
* *
9115577 ACTTACCCTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCCTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
9115642 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
9115707 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
9115751 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCCTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
9115816 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
**
9115881 ACTTTAAACTCGTACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
9115905 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCCTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:9115899 original size:29 final size:30
Alignment explanation
Indices: 9115857--9115935 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
9115847 CTTAATAATC
9115857 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
* *
9115887 AACTCGTACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
9115916 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
9115936 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 31 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:9123683 original size:68 final size:65
Alignment explanation
Indices: 9123470--9123676 Score: 192
Period size: 67 Copynumber: 3.1 Consensus size: 65
9123460 TATAGTTCGA
* * * *
9123470 CTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTA-TCTCGT
1 CTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATTCTCGT
9123531 AG
64 AG
* * * * * *
9123533 CTCTATTGTCTACATGGTGTCCTTCACCA-AGAACCACACATGCGACCTAGATACATATA-TCCC
1 CTCTCTTGTCTACATGGTG---TACA-CATAGTACCACCCATGCGACCTAGCTACATATATTCTC
9123596 GTAG
62 GTAG
*
9123600 CTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTCG
1 CTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT-AT-AT-TCTCG
9123665 TAG
63 TAG
9123668 CTCTCTTGT
1 CTCTCTTGT
9123677 ACACATGATG
Statistics
Matches: 115, Mismatches: 17, Indels: 19
0.76 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 26 0.23
65 2 0.02
66 21 0.18
67 29 0.25
68 18 0.16
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (65 bp):
CTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATTCTCGTAG
Found at i:9136842 original size:21 final size:22
Alignment explanation
Indices: 9136818--9136858 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9136808 TATAGTGAAT
*
9136818 TTCTTTTA-ATAAACTTAAAGA
1 TTCTTGTAGATAAACTTAAAGA
*
9136839 TTCTTGTAGCTAAACTTAAA
1 TTCTTGTAGATAAACTTAAA
9136859 AAGAATTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.41
Consensus pattern (22 bp):
TTCTTGTAGATAAACTTAAAGA
Found at i:9139654 original size:30 final size:30
Alignment explanation
Indices: 9139618--9139690 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
9139608 TGGTTGTCCC
*
9139618 AACCCTTTTCATAGCTCGATAGATGAAGCT
1 AACCCTTTTCATAGCTCGATAGACGAAGCT
* * * *
9139648 AACCCTTTTTCACAGTTTGATAGCCGAAGCT
1 AACCC-TTTTCATAGCTCGATAGACGAAGCT
*
9139679 ATCCCTTTTCAT
1 AACCCTTTTCAT
9139691 TATTTGATAG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
30 11 0.31
31 24 0.69
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (30 bp):
AACCCTTTTCATAGCTCGATAGACGAAGCT
Found at i:9139697 original size:30 final size:29
Alignment explanation
Indices: 9139620--9139840 Score: 158
Period size: 30 Copynumber: 7.3 Consensus size: 29
9139610 GTTGTCCCAA
** * * *
9139620 CCCTTTTCATAGCTCGATAGATGAAGCTAA
1 CCCTTTTCATAATTTGATAG-TCAAGCTAT
* * *
9139650 CCCTTTTTCACAGTTTGATAGCCGAAGCTAT
1 CCC-TTTTCATAATTTGATAGTC-AAGCTAT
* *
9139681 CCCTTTTCATTATTTGATAGTCATCA-CCAT
1 CCCTTTTCATAATTTGATAGTCA--AGCTAT
9139711 CCCTTTTCATAATTTGATAGTCAAAGCTAT
1 CCCTTTTCATAATTTGATAGTC-AAGCTAT
* * *
9139741 CCCATTTCACAATTTGATAGCCAAAGCTAT
1 CCCTTTTCATAATTTGATAGTC-AAGCTAT
* ** * *
9139771 CCGTTTTCATTGTTCGATGGTCATCA-CTAT
1 CCCTTTTCATAATTTGATAGTCA--AGCTAT
* *
9139801 CCCTTTTCATAATTTAATAGTCGAGGCTAT
1 CCCTTTTCATAATTTGATAGTC-AAGCTAT
9139831 CCCTTTTCAT
1 CCCTTTTCAT
9139841 TAGCCGATGA
Statistics
Matches: 150, Mismatches: 31, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
29 3 0.02
30 120 0.80
31 27 0.18
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.38
Consensus pattern (29 bp):
CCCTTTTCATAATTTGATAGTCAAGCTAT
Found at i:9139778 original size:90 final size:90
Alignment explanation
Indices: 9139655--9139839 Score: 271
Period size: 90 Copynumber: 2.1 Consensus size: 90
9139645 GCTAACCCTT
* * *
9139655 TTTCACAGTTTGATAGCCGAAGCTATCCCTTTTCATTATTTGATAGTCATCACCATCCCTTTTCA
1 TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
*
9139720 TAATTTGATAGTCAAAGCTATCCCA
66 TAATTTAATAGTCAAAGCTATCCCA
* * * *
9139745 TTTCACAATTTGATAGCCAAAGCTATCCGTTTTCATTGTTCGATGGTCATCACTATCCCTTTTCA
1 TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
* * *
9139810 TAATTTAATAGTCGAGGCTATCCCT
66 TAATTTAATAGTCAAAGCTATCCCA
9139835 TTTCA
1 TTTCA
9139840 TTAGCCGATG
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 84 1.00
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (90 bp):
TTTCACAATTTGATAGCCAAAGCTATCCCTTTTCATTATTCGATAGTCATCACCATCCCTTTTCA
TAATTTAATAGTCAAAGCTATCCCA
Found at i:9142111 original size:43 final size:43
Alignment explanation
Indices: 9141971--9142114 Score: 150
Period size: 43 Copynumber: 3.3 Consensus size: 43
9141961 ATAAAGATGA
* * * * *
9141971 GATTATATGTAAGACCATGTCTGGGATATTGGCATTG-TAGTGA
1 GATTACATGTAAGACCATGTCTGGGACACTGGCATCGATA-TGT
*
9142014 GATTACGTGTAAGACCATGTCTGGGACACTGGCATC-ATTAAT-T
1 GATTACATGTAAGACCATGTCTGGGACACTGGCATCGA-T-ATGT
* * *
9142057 GATTACGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGT
1 GATTACATGTAAGACCATGTCTGGGACACTGGCATCGATATGT
*
9142100 GATAACATGTAAGAC
1 GATTACATGTAAGAC
9142115 TATATCTAGG
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
42 2 0.02
43 80 0.93
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACACTGGCATCGATATGT
Found at i:9146124 original size:30 final size:30
Alignment explanation
Indices: 9146073--9146129 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
9146063 GGTCTGTAAC
* *
9146073 ACGGACGTGTCTGGTAGCCGTGTGAGGTAT
1 ACGGACGTGTCCGGTAACCGTGTGAGGTAT
*
9146103 ACGGGCGTGTCCGGTAACCGTGTGAGG
1 ACGGACGTGTCCGGTAACCGTGTGAGG
9146130 CACACGGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.19, G:0.42, T:0.23
Consensus pattern (30 bp):
ACGGACGTGTCCGGTAACCGTGTGAGGTAT
Found at i:9150767 original size:37 final size:37
Alignment explanation
Indices: 9150717--9150795 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
9150707 TTATTACGAA
* * *
9150717 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
9150754 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
9150791 GTCTT
1 GTCTT
9150796 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:9150992 original size:47 final size:47
Alignment explanation
Indices: 9150914--9151203 Score: 436
Period size: 47 Copynumber: 6.1 Consensus size: 47
9150904 CCCTTCGGGA
* * * *
9150914 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
9150961 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9151008 CTTATCACATATATACCCTTTCACATTCATCACACCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
9151055 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
9151104 CTTATCACGTATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9151151 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
9151200 CTTA
1 CTTA
9151204 CTATCATTTC
Statistics
Matches: 219, Mismatches: 20, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
47 134 0.61
49 85 0.39
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9151117 original size:96 final size:96
Alignment explanation
Indices: 9150914--9151203 Score: 476
Period size: 96 Copynumber: 3.0 Consensus size: 96
9150904 CCCTTCGGGA
* * * * *
9150914 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTCGGCCCTGTCACATATATAT--
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
9150977 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
9151008 CTTATCACATATATACCCTTTCACATTCATCACACCGGCCATTAGGCCCTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
9151073 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
9151104 CTTATCACGTATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
9151169 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
9151200 CTTA
1 CTTA
9151204 CTATCATTTC
Statistics
Matches: 182, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
94 56 0.31
96 126 0.69
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:9156756 original size:30 final size:30
Alignment explanation
Indices: 9156720--9156786 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
9156710 GTTGTCCCAA
*
9156720 CCCTTTTCATAGCTCAATAGCCCAAGCTAT
1 CCCTTTTCACAGCTCAATAGCCCAAGCTAT
* * **
9156750 CCCTTTTCACAGGTTAATAGCTGAAGCTAT
1 CCCTTTTCACAGCTCAATAGCCCAAGCTAT
9156780 CCTCTTT
1 CC-CTTT
9156787 CATTATTTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 27 0.87
31 4 0.13
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (30 bp):
CCCTTTTCACAGCTCAATAGCCCAAGCTAT
Found at i:9156812 original size:30 final size:30
Alignment explanation
Indices: 9156778--9156856 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 30
9156768 AGCTGAAGCT
9156778 ATCCTCTTTCATTATTTGATGGTCGTCACC
1 ATCCTCTTTCATTATTTGATGGTCGTCACC
* *
9156808 ATCCTTTTTCATT-GTTGATGGTCGTCACC
1 ATCCTCTTTCATTATTTGATGGTCGTCACC
*
9156837 ATCC-CTTTTCATAATTTGAT
1 ATCCTC-TTTCATTATTTGAT
9156857 AGCTGAAACT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.18, C:0.24, G:0.13, T:0.46
Consensus pattern (30 bp):
ATCCTCTTTCATTATTTGATGGTCGTCACC
Found at i:9156948 original size:29 final size:29
Alignment explanation
Indices: 9156784--9156967 Score: 111
Period size: 30 Copynumber: 6.2 Consensus size: 29
9156774 AGCTATCCTC
* *
9156784 TTTCATTATTTGATGGTCGTCACCATCCTT
1 TTTCATTA-TTGATGGTCATCACCATCCCT
* *
9156814 TTTCATTGTTGATGGTCGTCACCATCCCT
1 TTTCATTATTGATGGTCATCACCATCCCT
* * * * *
9156843 TTTCATAATTTGATAGCTGA-AACTATCCCT
1 TTTCATTA-TTGAT-GGTCATCACCATCCCT
** * * * *
9156873 TTTCACAATTGGATAGCCA-AAGCTATCCCT
1 TTTCATTATT-GATGGTCATCA-CCATCCCT
** * *
9156903 TTTTGTTGTTCAATGGTCATCACCATCCCT
1 TTTCATTATT-GATGGTCATCACCATCCCT
* *
9156933 TTTCATTATTGATGGTCGTCACCATCACT
1 TTTCATTATTGATGGTCATCACCATCCCT
9156962 TTTCAT
1 TTTCAT
9156968 AATTTGATAG
Statistics
Matches: 118, Mismatches: 31, Indels: 11
0.74 0.19 0.07
Matches are distributed among these distances:
29 53 0.45
30 62 0.53
31 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.41
Consensus pattern (29 bp):
TTTCATTATTGATGGTCATCACCATCCCT
Found at i:9156990 original size:89 final size:90
Alignment explanation
Indices: 9156825--9156994 Score: 209
Period size: 89 Copynumber: 1.9 Consensus size: 90
9156815 TTCATTGTTG
* * *
9156825 ATGGTCGTCACCATCCCTTTTCATAATTTGATAGCTGAAACTATCCCTTTTCACAATTGGATAGC
1 ATGGTCATCACCATCCCTTTTCATAATTTGATAGCTGAAACCATCACTTTTCACAATTGGATAGC
9156890 CAAAGCTATCCCTTTTTGTTGTTCA
66 CAAAGCTATCCCTTTTTGTTGTTCA
* * ** * *
9156915 ATGGTCATCACCATCCCTTTTCATTA-TTGAT-GGTCGTCACCATCACTTTTCATAATTTGATAG
1 ATGGTCATCACCATCCCTTTTCATAATTTGATAGCT-GAAACCATCACTTTTCACAATTGGATAG
* * *
9156978 TCGAGGCTATCCCTTTT
65 CCAAAGCTATCCCTTTT
9156995 CATTATTTTG
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
88 2 0.03
89 41 0.61
90 24 0.36
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.39
Consensus pattern (90 bp):
ATGGTCATCACCATCCCTTTTCATAATTTGATAGCTGAAACCATCACTTTTCACAATTGGATAGC
CAAAGCTATCCCTTTTTGTTGTTCA
Found at i:9159408 original size:40 final size:40
Alignment explanation
Indices: 9159324--9159515 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
9159314 TTGAATGATG
* * * *
9159324 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
* *
9159363 ATCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
9159404 TCCGGGCTAA-TCCCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
9159443 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
9159482 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
9159516 AGCTATATCC
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.26
40 82 0.66
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:9159460 original size:79 final size:79
Alignment explanation
Indices: 9159324--9159508 Score: 187
Period size: 79 Copynumber: 2.3 Consensus size: 79
9159314 TTGAATGATG
* * *
9159324 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAA-TCCCGAAGGATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
9159389 GTACGAGATACTA-A
65 GTACGAGATACTATA
* * * **
9159403 TTCCGGGCTAATCCCGAAGGTATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 -TCCGGGCTAATCCCGAAGG-ATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
* *
9159466 TTGTGCGAGTTACTATA
63 TTGTACGAGATACTATA
* *
9159483 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTA-ATCCCGAAGG-ATTTG
9159509 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 55 0.62
80 32 0.36
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTG
TACGAGATACTATA
Found at i:9159530 original size:79 final size:79
Alignment explanation
Indices: 9159377--9159541 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
9159367 GGACTAAGAT
* * * **
9159377 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAATCCCGAAGGTATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTACGAGATACTAATACCGGGCTAATCCCGAAGGCATTTGAACGAGTTACTAA
*
9159442 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
9159456 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTACGAGATACTAAT-ACCGGGCTA-ATCCCGAAGGCATTTGAACGAGTTA-C
* *
9159519 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
9159535 CCGAAGG
1 CCGAAGG
9159542 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTACGAGATACTAATACCGGGCTAATCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:9167238 original size:18 final size:18
Alignment explanation
Indices: 9167211--9167281 Score: 97
Period size: 18 Copynumber: 3.9 Consensus size: 18
9167201 TCCAACTACT
*
9167211 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
* * *
9167229 GTATATGTGAATAGTTCT
1 GTATACGTGAATAGTACC
*
9167247 GTATACGTGAATAGTATC
1 GTATACGTGAATAGTACC
9167265 GTATACGTGAATAGTAC
1 GTATACGTGAATAGTAC
9167282 TATAAACGGT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:9167256 original size:36 final size:36
Alignment explanation
Indices: 9167209--9167279 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
9167199 ATTCCAACTA
*
9167209 CTGTATACGTGAACAGTACCGTATATGTGAATAGTT
1 CTGTATACGTGAACAGTACCGTATACGTGAATAGTT
* *
9167245 CTGTATACGTGAATAGTATCGTATACGTGAATAGT
1 CTGTATACGTGAACAGTACCGTATACGTGAATAGT
9167280 ACTATAAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.34
Consensus pattern (36 bp):
CTGTATACGTGAACAGTACCGTATACGTGAATAGTT
Found at i:9167844 original size:21 final size:22
Alignment explanation
Indices: 9167818--9167859 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
9167808 TGACCTTTCC
*
9167818 AAGGTATGGG-TAGGTATGGGA
1 AAGGTATGGGCAAGGTATGGGA
9167839 AAGGTATGGGCAAGGTATGGG
1 AAGGTATGGGCAAGGTATGGG
9167860 GTATATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (22 bp):
AAGGTATGGGCAAGGTATGGGA
Found at i:9167845 original size:11 final size:10
Alignment explanation
Indices: 9167818--9167859 Score: 57
Period size: 11 Copynumber: 4.0 Consensus size: 10
9167808 TGACCTTTCC
9167818 AAGGTATGGG
1 AAGGTATGGG
*
9167828 TAGGTATGGG
1 AAGGTATGGG
9167838 AAAGGTATGGG
1 -AAGGTATGGG
9167849 CAAGGTATGGG
1 -AAGGTATGGG
9167860 GTATATTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (10 bp):
AAGGTATGGG
Found at i:9173210 original size:46 final size:46
Alignment explanation
Indices: 9173160--9173335 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
9173150 TGATTGAGCA
9173160 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
9173206 TCCGAACTCGTTGAGTTGAGTCCGAATTC-GTGA--GATGC-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
9173251 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
9173299 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9173336 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.05
45 5 0.04
46 61 0.54
47 28 0.25
48 3 0.03
50 5 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:9192433 original size:46 final size:46
Alignment explanation
Indices: 9192383--9192558 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
9192373 TGATTGAGCA
*
9192383 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
9192429 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGC-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
9192474 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** *
9192522 -CCTGAGCTCGTTGAGTTGCTTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
9192559 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.05
45 5 0.05
46 58 0.53
47 29 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:9192539 original size:93 final size:93
Alignment explanation
Indices: 9192380--9192551 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
9192370 GGATGATTGA
*
9192380 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
9192445 TGAGTCCGAGTTCGTGAGATGCAACTAG
66 TGAGTCCGAGTTCGTGAGATGCAACTAG
* *
9192473 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
**
9192537 TTGCTTCCGAGTTCG
65 TTGAGTCCGAGTTCG
9192552 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGCAACTAG
Found at i:9201154 original size:23 final size:22
Alignment explanation
Indices: 9201136--9201188 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
9201126 AACAACTCAT
9201136 ACATGCAA-AAATCATCAACCA
1 ACATGCAACAAATCATCAACCA
*
9201157 ACATTCAACTAAATCATCAACCA
1 ACATGCAAC-AAATCATCAACCA
*
9201180 ACATTCAAC
1 ACATGCAAC
9201189 TAACATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 7 0.24
23 22 0.76
ACGTcount: A:0.49, C:0.30, G:0.02, T:0.19
Consensus pattern (22 bp):
ACATGCAACAAATCATCAACCA
Found at i:9201189 original size:23 final size:23
Alignment explanation
Indices: 9201144--9201191 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
9201134 ATACATGCAA
9201144 AAATCATCAACCAACATTCAACT
1 AAATCATCAACCAACATTCAACT
9201167 AAATCATCAACCAACATTCAACT
1 AAATCATCAACCAACATTCAACT
9201190 AA
1 AA
9201192 CATTAAAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (23 bp):
AAATCATCAACCAACATTCAACT
Found at i:9204203 original size:40 final size:39
Alignment explanation
Indices: 9204105--9204367 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
9204095 TCCTCGTTCA
* * * *
9204105 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
9204144 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
9204183 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
9204223 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
9204263 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
9204303 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
9204344 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
9204368 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:9204327 original size:120 final size:119
Alignment explanation
Indices: 9204105--9204367 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
9204095 TCCTCGTTCA
* * *
9204105 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
9204170 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
9204223 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
9204288 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
9204344 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
9204368 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:9204376 original size:41 final size:41
Alignment explanation
Indices: 9204299--9204376 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
9204289 TTTGTATCTC
* * *
9204299 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
9204340 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
9204377 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:9211917 original size:40 final size:40
Alignment explanation
Indices: 9211819--9212161 Score: 451
Period size: 40 Copynumber: 8.6 Consensus size: 40
9211809 TCCTCGTTCA
* * * ** *
9211819 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
9211858 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
9211898 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
9211938 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
9211978 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
9212018 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
9212058 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
9212098 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
9212138 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
9212162 CAGCATTCAA
Statistics
Matches: 279, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
39 37 0.13
40 234 0.84
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:9215513 original size:42 final size:42
Alignment explanation
Indices: 9215456--9215618 Score: 159
Period size: 42 Copynumber: 3.9 Consensus size: 42
9215446 TAGGGTTATG
* * * *
9215456 TGTGATTACGTGTAAGGCCATATCTGGGATATGGCATTGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
9215498 TGTGATTTCATGTAAGACCATGTCTGGGACAT-GCATCAATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * ** * *
9215539 CGAGACATCGTGTAAGACCATAGT-TGGGCTATCGGCATCGATA
1 TGTGATTTCATGTAAGACCATA-TCTGGGATAT-GGCATCGATA
**
9215582 TGTGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCAT
9215619 TGGCATCTTA
Statistics
Matches: 94, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
41 29 0.31
42 34 0.36
43 31 0.33
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:9218904 original size:21 final size:22
Alignment explanation
Indices: 9218869--9218909 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
9218859 TTGAAGTTCT
9218869 AGTTGGAATTGTAATGTGTTTA
1 AGTTGGAATTGTAATGTGTTTA
*
9218891 AGTTGGCA-TGTAATGTGTT
1 AGTTGGAATTGTAATGTGTT
9218910 GAATTTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.24, C:0.02, G:0.29, T:0.44
Consensus pattern (22 bp):
AGTTGGAATTGTAATGTGTTTA
Done.